assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003354685.1_ASM335468v1	NZ_CP022896	Staphylococcus aureus strain 277 chromosome, complete genome	1	799159-799243	1	CRISPRCasFinder	no	cas3	cas3,csa3,DEDDh,DinG,WYL	Unclear	CACCCCAACTTGCATTGTCTGTAGAA	26	1	2	799185-799217|799185-799217	NZ_CP022896.1_1034447-1034479|NZ_CP022896.1_2358404-2358372	NA	1	1	Unclear	cas3,csa3,DEDDh,DinG,WYL	NA|33aa|up_1|NZ_CP022896.1_797599_797698_+,NA	NA|357aa|up_9|NZ_CP022896.1_787608_788679_-	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain	NA|352aa|up_8|NZ_CP022896.1_788996_790052_+	cd06853, GT_WecA_like, This subfamily contains Escherichia coli WecA, Bacillus subtilis TagO and related proteins	NA|214aa|up_7|NZ_CP022896.1_790215_790857_-	COG1739, COG1739, Uncharacterized conserved protein [Function unknown]	NA|289aa|up_6|NZ_CP022896.1_791000_791867_+	TIGR00762, DegV, EDD domain protein, DegV family	cas3|361aa|up_5|NZ_CP022896.1_792230_793313_+	COG4098, comFA, Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]	NA|225aa|up_4|NZ_CP022896.1_793305_793980_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_3|NZ_CP022896.1_794040_794613_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_2|NZ_CP022896.1_795026_797558_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|33aa|up_1|NZ_CP022896.1_797599_797698_+	NA	NA|370aa|up_0|NZ_CP022896.1_797872_798983_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|280aa|down_0|NZ_CP022896.1_799751_800591_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|down_1|NZ_CP022896.1_800753_801404_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|down_2|NZ_CP022896.1_801400_801637_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|down_3|NZ_CP022896.1_801905_803891_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|down_4|NZ_CP022896.1_803898_806745_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_5|NZ_CP022896.1_807355_808288_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|281aa|down_6|NZ_CP022896.1_808293_809136_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_7|NZ_CP022896.1_809143_809629_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_8|NZ_CP022896.1_809636_811076_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_9|NZ_CP022896.1_811142_812078_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase
GCF_003354685.1_ASM335468v1	NZ_CP022896	Staphylococcus aureus strain 277 chromosome, complete genome	2	906712-906797	2	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	2	906742-906767|906742-906767	NZ_CP022896.1_2098746-2098771|NZ_CP022896.1_2158827-2158852	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA,NA	NA|499aa|up_9|NZ_CP022896.1_895601_897098_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP022896.1_897090_897420_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP022896.1_897431_897860_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP022896.1_897852_900258_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP022896.1_900388_900772_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP022896.1_900835_901429_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP022896.1_901843_902221_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP022896.1_902582_903710_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP022896.1_904017_905208_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP022896.1_905316_906561_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP022896.1_906955_907885_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP022896.1_908126_909506_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP022896.1_909495_910701_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP022896.1_911051_912383_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP022896.1_912708_913284_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP022896.1_913288_913813_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP022896.1_913828_914404_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP022896.1_914563_918040_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP022896.1_918040_921694_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP022896.1_921859_922762_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_003354685.1_ASM335468v1	NZ_CP022896	Staphylococcus aureus strain 277 chromosome, complete genome	3	1933780-1933907	3	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|132aa|up_7|NZ_CP022896.1_1925939_1926335_-,NA|51aa|up_6|NZ_CP022896.1_1926935_1927088_-,NA	NA|274aa|up_9|NZ_CP022896.1_1923081_1923903_+	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|462aa|up_8|NZ_CP022896.1_1924358_1925744_-	PRK00485, fumC, fumarate hydratase; Reviewed	NA|132aa|up_7|NZ_CP022896.1_1925939_1926335_-	NA	NA|51aa|up_6|NZ_CP022896.1_1926935_1927088_-	NA	NA|200aa|up_5|NZ_CP022896.1_1927112_1927712_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_4|NZ_CP022896.1_1927870_1928341_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_3|NZ_CP022896.1_1928345_1929488_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_2|NZ_CP022896.1_1929623_1930352_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_1|NZ_CP022896.1_1930338_1931796_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_0|NZ_CP022896.1_1932054_1933116_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|149aa|down_0|NZ_CP022896.1_1941913_1942360_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP022896.1_1942456_1943407_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP022896.1_1943412_1943868_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP022896.1_1943948_1945238_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP022896.1_1945530_1946625_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|579aa|down_5|NZ_CP022896.1_1946815_1948552_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_6|NZ_CP022896.1_1948842_1949385_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_7|NZ_CP022896.1_1949687_1950725_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_8|NZ_CP022896.1_1950876_1951854_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|279aa|down_9|NZ_CP022896.1_1952114_1952951_-	COG1682, TagG, ABC-type polysaccharide/polyol phosphate export systems, permease component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
GCF_003354685.1_ASM335468v1	NZ_CP022896	Staphylococcus aureus strain 277 chromosome, complete genome	4	1978681-1978872	1	CRT	no	DEDDh	cas3,csa3,DEDDh,DinG,WYL	Unclear	NNTCTNTGTTGGGGCCCNCACC	22	2	9	1978702-1978738|1978760-1978793|1978760-1978793|1978760-1978793|1978760-1978793|1978760-1978793|1978760-1978793|1978760-1978793|1978760-1978793	NZ_CP022896.1_812440-812476|NZ_CP022896.1_255948-255915|NZ_CP022896.1_330705-330672|NZ_CP022896.1_766053-766020|NZ_CP022896.1_799224-799257|NZ_CP022896.1_1060650-1060683|NZ_CP022896.1_1754722-1754689|NZ_CP022896.1_2323010-2323043|NZ_CP022896.1_2466157-2466124	NA	3	3	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|37aa|up_9|NZ_CP022896.1_1970086_1970197_-,NA|31aa|up_5|NZ_CP022896.1_1973202_1973295_-,NA|49aa|down_0|NZ_CP022896.1_1979176_1979323_-	NA|37aa|up_9|NZ_CP022896.1_1970086_1970197_-	NA	NA|244aa|up_8|NZ_CP022896.1_1970282_1971014_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|up_7|NZ_CP022896.1_1971015_1972329_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|up_6|NZ_CP022896.1_1972620_1973121_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|up_5|NZ_CP022896.1_1973202_1973295_-	NA	DEDDh|185aa|up_4|NZ_CP022896.1_1973511_1974066_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|up_3|NZ_CP022896.1_1974132_1975203_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|up_2|NZ_CP022896.1_1975449_1975980_-	pfam11667, DUF3267, Putative zincin peptidase	NA|454aa|up_1|NZ_CP022896.1_1976149_1977511_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|316aa|up_0|NZ_CP022896.1_1977591_1978539_-	PRK13337, PRK13337, putative lipid kinase; Reviewed	NA|49aa|down_0|NZ_CP022896.1_1979176_1979323_-	NA	NA|476aa|down_1|NZ_CP022896.1_1979361_1980789_-	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA|486aa|down_2|NZ_CP022896.1_1980801_1982259_-	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	NA|101aa|down_3|NZ_CP022896.1_1982260_1982563_-	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA|513aa|down_4|NZ_CP022896.1_1982929_1984468_+	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter	NA|400aa|down_5|NZ_CP022896.1_1984556_1985756_-	COG4851, CamS, Protein involved in sex pheromone biosynthesis [General function prediction only]	NA|668aa|down_6|NZ_CP022896.1_1985768_1987772_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|731aa|down_7|NZ_CP022896.1_1987775_1989968_-	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|231aa|down_8|NZ_CP022896.1_1989964_1990657_-	COG1646, COG1646, Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]	NA|101aa|down_9|NZ_CP022896.1_1990839_1991142_-	COG4496, COG4496, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_003354685.1_ASM335468v1	NZ_CP022896	Staphylococcus aureus strain 277 chromosome, complete genome	5	2224488-2224689	1	PILER-CR	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCCTTGGTTGGCAGGTGCAGCTGGATGTGCTGTA	34	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|35aa|up_8|NZ_CP022896.1_2205904_2206009_-,NA|53aa|up_7|NZ_CP022896.1_2206688_2206847_+,NA	NA|549aa|up_9|NZ_CP022896.1_2203832_2205479_+	COG3666, COG3666, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|35aa|up_8|NZ_CP022896.1_2205904_2206009_-	NA	NA|53aa|up_7|NZ_CP022896.1_2206688_2206847_+	NA	NA|286aa|up_6|NZ_CP022896.1_2207505_2208363_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP022896.1_2208430_2209213_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP022896.1_2209444_2211250_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP022896.1_2211930_2213469_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP022896.1_2213503_2215636_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP022896.1_2215647_2216082_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP022896.1_2216081_2217188_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP022896.1_2225177_2226533_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP022896.1_2226559_2227492_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP022896.1_2227493_2228303_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP022896.1_2228492_2229401_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP022896.1_2235635_2236700_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|158aa|down_5|NZ_CP022896.1_2238479_2238953_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_6|NZ_CP022896.1_2239074_2240418_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_7|NZ_CP022896.1_2240595_2241279_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_8|NZ_CP022896.1_2241297_2242485_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc	NA|172aa|down_9|NZ_CP022896.1_2242528_2243044_-	pfam04307, YdjM, LexA-binding, inner membrane-associated putative hydrolase
GCF_003354685.1_ASM335468v1	NZ_CP022896	Staphylococcus aureus strain 277 chromosome, complete genome	6	2283039-2283164	4	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACTCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|56aa|up_8|NZ_CP022896.1_2273445_2273613_+,NA|61aa|up_1|NZ_CP022896.1_2281961_2282144_-,NA	NA|139aa|up_9|NZ_CP022896.1_2272786_2273203_-	cd01109, HTH_YyaN, Helix-Turn-Helix DNA binding domain of the MerR-like transcription regulators YyaN and YraB	NA|56aa|up_8|NZ_CP022896.1_2273445_2273613_+	NA	NA|809aa|up_7|NZ_CP022896.1_2273609_2276036_+	cd01083, GAG_Lyase, Glycosaminoglycan (GAG) polysaccharide lyase family	NA|285aa|up_6|NZ_CP022896.1_2276095_2276950_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|272aa|up_5|NZ_CP022896.1_2277160_2277976_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP022896.1_2278270_2278696_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP022896.1_2279086_2279791_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP022896.1_2279827_2281492_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP022896.1_2281961_2282144_-	NA	NA|60aa|up_0|NZ_CP022896.1_2282793_2282973_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|479aa|down_0|NZ_CP022896.1_2283221_2284658_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|133aa|down_1|NZ_CP022896.1_2285006_2285405_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_2|NZ_CP022896.1_2285418_2285856_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|265aa|down_3|NZ_CP022896.1_2286104_2286899_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_4|NZ_CP022896.1_2286903_2287710_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_5|NZ_CP022896.1_2287699_2288560_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_6|NZ_CP022896.1_2288556_2289366_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|523aa|down_7|NZ_CP022896.1_2289741_2291309_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|123aa|down_8|NZ_CP022896.1_2291561_2291930_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_9|NZ_CP022896.1_2291946_2292891_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional
GCF_003354685.1_ASM335468v1	NZ_CP022896	Staphylococcus aureus strain 277 chromosome, complete genome	7	2323046-2323126	5	CRISPRCasFinder	no		cas3,csa3,DEDDh,DinG,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	6	2323071-2323101|2323071-2323101|2323071-2323101|2323071-2323101|2323071-2323101|2323071-2323101	NZ_CP022896.1_1060713-1060743|NZ_CP022896.1_1633697-1633727|NZ_CP022896.1_812564-812594|NZ_CP022896.1_861903-861873|NZ_CP022896.1_906733-906703|NZ_CP022896.1_1968144-1968174	NA	1	1	Orphan	cas3,csa3,DEDDh,DinG,WYL	NA|55aa|up_9|NZ_CP022896.1_2313575_2313740_+,NA|106aa|up_8|NZ_CP022896.1_2313984_2314302_+,NA|84aa|up_5|NZ_CP022896.1_2319426_2319678_+,NA|57aa|up_0|NZ_CP022896.1_2322818_2322989_+,NA	NA|55aa|up_9|NZ_CP022896.1_2313575_2313740_+	NA	NA|106aa|up_8|NZ_CP022896.1_2313984_2314302_+	NA	NA|1056aa|up_7|NZ_CP022896.1_2314488_2317656_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP022896.1_2317772_2319038_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP022896.1_2319426_2319678_+	NA	NA|255aa|up_4|NZ_CP022896.1_2319669_2320434_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP022896.1_2320596_2321037_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP022896.1_2321029_2322241_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP022896.1_2322342_2322693_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP022896.1_2322818_2322989_+	NA	NA|341aa|down_0|NZ_CP022896.1_2323269_2324292_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP022896.1_2324311_2324911_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP022896.1_2324917_2325151_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP022896.1_2325156_2325603_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP022896.1_2325616_2326102_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP022896.1_2326098_2327358_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP022896.1_2327420_2327915_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP022896.1_2327916_2328423_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP022896.1_2328451_2329456_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP022896.1_2329623_2330229_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
