The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	12269	71484	2935463	transposase,tRNA	Staphylococcus_phage(35.29%)	54	NA	NA
WP_000884334.1|12269_13556_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	51.2	2.7e-88
WP_000207095.1|14202_14898_+	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_000628050.1|14894_15224_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_000186481.1|15586_16555_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_001791710.1|16845_17784_+	YybS family protein	NA	NA	NA	NA	NA
WP_001081634.1|17798_19766_+	cyclic-di-AMP phosphodiesterase GdpP	NA	NA	NA	NA	NA
WP_000864305.1|19762_20209_+	50S ribosomal protein L9	NA	NA	NA	NA	NA
WP_000375647.1|20240_21641_+	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	48.1	5.4e-111
WP_000095327.1|21918_23202_+	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.6	2.3e-68
WP_000101976.1|24405_25107_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.2	3.5e-42
WP_000871607.1|25119_26946_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	31.3	1.6e-30
WP_001060131.1|26938_28273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001104172.1|28273_29062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000088648.1|29451_30252_+	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	35.9	4.6e-38
WP_000645780.1|30479_32798_+	LPXTG-anchored adenosine synthase AdsA	NA	NA	NA	NA	NA
WP_000704775.1|33165_33645_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_000566670.1|33864_35121_+	DUF3578 domain-containing protein	NA	NA	NA	NA	NA
WP_001282728.1|35535_35775_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001106057.1|35806_36481_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_020444595.1|36516_36906_+	hydroxymethylglutaryl-CoA synthase family protein	NA	NA	NA	NA	NA
WP_000958858.1|37742_38486_+	glycerophosphoryl diester phosphodiesterase	NA	NA	NA	NA	NA
WP_000872606.1|38582_39011_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_063852655.1|39056_41066_-	PBP2a family beta-lactam-resistant peptidoglycan transpeptidase MecA	NA	NA	NA	NA	NA
WP_001549960.1|41162_42149_+	beta-lactam sensor/signal transducer MecR1	NA	NA	NA	NA	NA
WP_115276553.1|42120_42378_+	DUF3387 domain-containing protein	NA	NA	NA	NA	NA
WP_162797737.1|44030_44537_-	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_115276555.1|44551_44710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106022.1|44756_45431_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	100.0	6.2e-129
WP_115276556.1|45460_46204_-	RepB family plasmid replication initiator protein	NA	NA	NA	NA	NA
WP_080351733.1|46915_47362_-	DUF334 domain-containing protein	NA	NA	NA	NA	NA
WP_049325240.1|47423_48434_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_002485398.1|48420_48618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115276557.1|48593_48983_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_002485551.1|49251_49530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_115276558.1|49626_50427_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_053522978.1|50522_50729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001106022.1|52470_53145_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	100.0	6.2e-129
WP_001096887.1|53824_54619_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_115276559.1|54711_55254_-	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	99.4	2.0e-93
WP_001255866.1|55250_56159_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000662263.1|56191_56926_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_001105999.1|57636_58311_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
WP_000122374.1|59878_61120_-	plasmid recombination protein	NA	NA	NA	NA	NA
WP_089535971.1|61305_62685_-	tetracycline efflux MFS transporter Tet(K)	NA	NA	NA	NA	NA
WP_001105999.1|62884_63559_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.0e-127
WP_162564149.1|63841_65188_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000525462.1|65487_65895_+	Hg(II)-responsive transcriptional regulator MerR	NA	NA	NA	NA	NA
WP_115276560.1|65911_66397_+	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_000010352.1|66393_67074_+	cytochrome c biosynthesis protein	NA	NA	NA	NA	NA
WP_001794630.1|67161_67548_+	mercuric transport protein MerT	NA	NA	NA	NA	NA
WP_000193219.1|67605_69249_+	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
WP_000790333.1|69330_69981_+	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_000377078.1|70175_70691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052998601.1|70809_71484_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	7.6e-127
>prophage 2
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	753418	761238	2935463		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|753418_754474_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|754473_755160_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|755134_755608_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|755949_756390_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|756669_757254_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|757352_758066_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|758069_758489_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|758490_759159_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|759509_760103_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|760086_761238_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 3
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	773210	787941	2935463		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|773210_774269_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|774619_775162_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|775785_776703_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|776793_776895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|776972_778478_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|778818_779319_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|779338_780205_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|781005_781404_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|781366_783472_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|783589_784561_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|785074_785230_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|785268_786240_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|786226_787183_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|787179_787941_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 4
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	867871	889080	2935463	terminase,integrase,coat	Staphylococcus_phage(76.92%)	32	870408:870424	886343:886359
WP_000571218.1|867871_868897_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.2e-27
WP_000520233.1|868889_869585_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000732326.1|869602_870424_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
870408:870424	attL	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_000266157.1|870566_871787_-|integrase	site-specific integrase	integrase	Q4ZE80	Staphylococcus_phage	47.5	6.4e-100
WP_000733775.1|871875_872604_-	staphylococcal enterotoxin type K	NA	A0EX09	Staphylococcus_phage	32.3	1.9e-22
WP_001228759.1|873426_873858_-	hypothetical protein	NA	Q4ZCB6	Staphylococcus_virus	56.0	5.1e-36
WP_000281657.1|873874_874333_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A0H4J322	Staphylococcus_phage	83.0	5.1e-66
WP_001260004.1|874344_874677_-	helix-turn-helix transcriptional regulator	NA	A0A1J0MFC1	Staphylococcus_phage	74.5	1.6e-37
WP_112368207.1|874869_875109_+	helix-turn-helix transcriptional regulator	NA	A0A2H4J9X2	uncultured_Caudovirales_phage	88.6	1.7e-33
WP_000091731.1|875124_875397_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	90.0	9.7e-41
WP_000784875.1|875408_875555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|875547_875757_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103942.1|875759_876080_+	DUF1474 family protein	NA	Q4ZE75	Staphylococcus_phage	51.9	1.3e-20
WP_001002732.1|876143_877013_+	hypothetical protein	NA	A0A1W6JQL5	Staphylococcus_phage	92.7	3.4e-156
WP_000390455.1|877029_878487_+	hypothetical protein	NA	A0A1W6JQD6	Staphylococcus_phage	96.1	1.0e-277
WP_001039168.1|878787_879150_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	99.2	8.9e-66
WP_000998181.1|879151_879436_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	95.7	1.9e-47
WP_001019764.1|879432_880074_+	hypothetical protein	NA	Q4ZE67	Staphylococcus_phage	91.5	1.5e-108
WP_001190615.1|880590_880932_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	99.1	1.4e-57
WP_000846285.1|880943_881522_+	hypothetical protein	NA	A0A2H4JBG0	uncultured_Caudovirales_phage	38.4	1.4e-28
WP_000448101.1|881539_881758_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000771368.1|881808_882336_+|coat	spore coat protein	coat	A0A1W6JQH7	Staphylococcus_phage	97.1	3.5e-87
WP_000358777.1|882338_882680_+	hypothetical protein	NA	A0A1W6JQM3	Staphylococcus_phage	98.2	1.4e-57
WP_001293067.1|882676_883246_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	97.9	1.0e-100
WP_000278085.1|883553_884354_+	staphylococcal enterotoxin type B	NA	A0A097PAT7	Streptococcus_pyogenes_phage	49.4	1.0e-53
WP_001035631.1|884431_884989_-	DUF4888 domain-containing protein	NA	A0A1W6JQE5	Staphylococcus_phage	73.8	1.4e-70
WP_001795626.1|885361_885514_+	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	98.0	7.6e-19
WP_000139424.1|885584_885695_+	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	94.4	2.4e-11
WP_000382163.1|885681_885882_+	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000752917.1|886712_886907_+	CsbD family protein	NA	NA	NA	NA	NA
886343:886359	attR	TTATTCCTGCTAAATAA	NA	NA	NA	NA
WP_001183858.1|887139_887991_-	DUF368 domain-containing protein	NA	NA	NA	NA	NA
WP_000168845.1|888318_889080_+	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	23.3	4.4e-06
>prophage 5
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	958044	1020337	2935463	protease,transposase,bacteriocin,tRNA	Staphylococcus_phage(18.18%)	60	NA	NA
WP_000195429.1|958044_959217_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_115276605.1|959429_960071_+	L-threonylcarbamoyladenylate synthase	NA	NA	NA	NA	NA
WP_001037436.1|960063_961182_+	membrane protein	NA	NA	NA	NA	NA
WP_000695342.1|961165_961681_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_115276606.1|961990_962425_+	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000682089.1|962681_962867_-	YjzD family protein	NA	NA	NA	NA	NA
WP_001100525.1|963161_964103_+	ketoacyl-ACP synthase III	NA	NA	NA	NA	NA
WP_000081240.1|964114_965359_+	beta-ketoacyl-ACP synthase II	NA	NA	NA	NA	NA
WP_000915155.1|965413_965785_-	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_000521533.1|966027_966954_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000829632.1|966953_968024_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000140050.1|968040_969123_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.8	8.4e-19
WP_000786737.1|969112_970054_+	ATP-binding cassette domain-containing protein	NA	F2Y1V6	Organic_Lake_phycodnavirus	26.9	2.7e-05
WP_000197019.1|970072_971728_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000517187.1|971939_973655_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001067038.1|973705_974692_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	30.4	1.0e-15
WP_000427770.1|974694_975675_+	dipeptide ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.1	2.7e-16
WP_000593417.1|975667_976630_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_001180262.1|976641_977523_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000448934.1|977564_978554_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|978848_979244_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217730.1|979614_980334_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959287.1|980454_981441_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_000082731.1|981488_983297_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.4	9.3e-47
WP_000896697.1|983756_984563_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214065.1|984585_984951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|985054_985648_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|985833_986181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|986197_986833_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|986849_987659_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|987655_988510_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|988530_989916_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|989925_991770_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_000933195.1|992047_992818_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|993012_994098_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570699.1|994439_996008_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_001288681.1|996149_996908_+	esterase family protein	NA	NA	NA	NA	NA
WP_115276607.1|997101_997611_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001795545.1|997723_998932_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|998891_1000067_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|1000499_1001981_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|1001964_1002225_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049959.1|1002224_1003787_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|1004088_1004892_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_115276608.1|1005110_1007435_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_115276609.1|1007451_1008810_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|1008948_1010460_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|1010946_1011516_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|1011725_1011944_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|1012024_1013011_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|1013209_1013386_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|1013400_1014003_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|1014919_1015021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001790097.1|1015030_1015303_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|1015346_1017311_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|1017313_1017634_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|1017630_1018272_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_001795544.1|1018359_1018650_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410721.1|1018928_1019138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|1019164_1020337_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 6
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1052659	1061132	2935463		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|1052659_1053142_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|1053128_1054253_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|1054256_1054961_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|1054960_1055224_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|1055225_1055897_+	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000032727.1|1055889_1058079_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|1058057_1059542_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|1059534_1060563_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|1060565_1061132_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 7
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1112725	1172373	2935463	capsid,portal,head,tRNA,plate,terminase,tail,holin	Staphylococcus_phage(80.88%)	82	NA	NA
WP_000401377.1|1112725_1113208_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843611.1|1113269_1114409_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872158.1|1114535_1115093_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|1115172_1115346_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_112367585.1|1115462_1116848_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	99.8	5.5e-265
WP_000525009.1|1117415_1117877_-	hypothetical protein	NA	W5R9J0	Staphylococcus_phage	100.0	1.2e-83
WP_001260487.1|1117889_1118213_-	helix-turn-helix transcriptional regulator	NA	A0A0H3U2V8	Staphylococcus_phage	100.0	2.0e-53
WP_000272859.1|1118376_1118625_+	helix-turn-helix transcriptional regulator	NA	A0A2K9VBT6	Staphylococcus_phage	100.0	1.7e-39
WP_023487065.1|1118637_1119081_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	99.3	4.4e-75
WP_033861758.1|1119095_1119275_+	hypothetical protein	NA	A0A0H3U490	Staphylococcus_phage	98.3	2.2e-25
WP_000394410.1|1119375_1119858_-	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_000933365.1|1120303_1120489_+	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
WP_001148586.1|1120490_1121240_+	antirepressor	NA	A0A0N7E0R7	Staphylococcus_phage	100.0	1.2e-136
WP_000395457.1|1121406_1121637_-	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
WP_031929005.1|1121816_1121978_+	DUF1270 family protein	NA	Q4ZAZ7	Staphylococcus_virus	98.1	1.2e-19
WP_115284601.1|1122072_1122333_+	DUF1108 family protein	NA	Q4ZDR5	Staphylococcus_virus	97.7	1.7e-42
WP_000815403.1|1122342_1122564_+	DUF2483 domain-containing protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000139720.1|1122556_1123180_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934384.1|1123179_1123605_+	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
WP_001004506.1|1123615_1124167_+	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
WP_115284602.1|1124167_1124836_+	hypothetical protein	NA	A0A0E3XBQ6	Staphylococcus_phage	99.1	5.7e-127
WP_031929003.1|1124835_1125600_+	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	100.0	1.2e-144
WP_115284603.1|1125592_1126360_+	alpha/beta hydrolase	NA	A0A2I6PDA9	Staphylococcus_phage	96.1	7.1e-113
WP_031790239.1|1126369_1127143_+	ATP-binding protein	NA	A0A2I6PDA0	Staphylococcus_phage	99.6	2.7e-144
WP_000256596.1|1127136_1127295_+	hypothetical protein	NA	A0A2I6PDX0	Staphylococcus_phage	96.2	5.8e-22
WP_001556702.1|1127307_1127529_+	DUF3269 family protein	NA	A0A1W6JQ35	Staphylococcus_phage	98.6	4.9e-35
WP_015997090.1|1127538_1127943_+	DUF1064 domain-containing protein	NA	C5I647	Staphylococcus_phage	100.0	1.6e-68
WP_001187254.1|1127947_1128133_+	DUF3113 family protein	NA	Q4ZA46	Staphylococcus_virus	100.0	4.1e-27
WP_115284604.1|1128133_1128748_+	hypothetical protein	NA	Q4ZAC3	Staphylococcus_virus	88.2	1.4e-66
WP_000228426.1|1128751_1128994_+	hypothetical protein	NA	A0A2D1G5G2	Staphylococcus_phage	97.5	1.2e-39
WP_000695762.1|1129006_1129408_+	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
WP_000979209.1|1129404_1129752_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_115284605.1|1129748_1130057_+	hypothetical protein	NA	C8CH03	Staphylococcus_phage	97.1	3.1e-51
WP_001065023.1|1130049_1130286_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000185680.1|1130290_1130827_+	hypothetical protein	NA	A0A1P8L6E0	Staphylococcus_phage	100.0	2.1e-95
WP_064221812.1|1130863_1131100_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	97.4	4.5e-34
WP_115284606.1|1131124_1131361_+	hypothetical protein	NA	S4SWB7	Staphylococcus_phage	91.0	2.2e-33
WP_000591891.1|1131353_1131527_+	transcriptional activator RinB	NA	R4IFL3	Staphylococcus_phage	98.2	1.1e-21
WP_000989954.1|1131527_1131893_+	hypothetical protein	NA	Q4ZBJ9	Staphylococcus_phage	100.0	3.6e-59
WP_000989960.1|1131893_1132040_+	hypothetical protein	NA	Q4ZBJ8	Staphylococcus_phage	100.0	7.5e-16
WP_000162702.1|1132063_1132486_+	RinA family phage transcriptional activator	NA	Q4ZBJ7	Staphylococcus_phage	100.0	1.2e-74
WP_050960855.1|1132813_1133308_+|terminase	terminase	terminase	A0A0E3T9M2	Staphylococcus_phage	98.8	1.4e-82
WP_031907817.1|1133300_1134509_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0E3TAL1	Staphylococcus_phage	100.0	4.7e-236
WP_001159668.1|1134462_1135941_+|portal	phage portal protein	portal	Q4ZB45	Staphylococcus_virus	99.6	3.3e-284
WP_001795666.1|1135879_1136860_+|capsid	minor capsid protein	capsid	Q4ZAW9	Staphylococcus_virus	98.2	3.3e-179
WP_000366932.1|1136957_1137554_+	hypothetical protein	NA	R4IG73	Staphylococcus_phage	100.0	5.6e-73
WP_001135558.1|1137574_1138399_+|capsid	N4-gp56 family major capsid protein	capsid	R4IH32	Staphylococcus_phage	100.0	5.6e-148
WP_115284607.1|1138415_1138742_+	Rho termination protein	NA	A0A0E3TAL3	Staphylococcus_phage	99.1	7.3e-51
WP_000338935.1|1138741_1139056_+|head,tail	phage head-tail adapter protein	head,tail	R4IFL8	Staphylococcus_phage	100.0	4.0e-54
WP_031927508.1|1139048_1139384_+|head	phage head closure protein	head	A0A0H4ISR6	Staphylococcus_phage	98.2	8.8e-60
WP_001151335.1|1139370_1139784_+	HK97 gp10 family phage protein	NA	R4IG77	Staphylococcus_phage	100.0	2.0e-77
WP_000270196.1|1139796_1140234_+	DUF3168 domain-containing protein	NA	A0A0E3T9M9	Staphylococcus_phage	100.0	2.1e-77
WP_000046067.1|1140220_1140781_+	hypothetical protein	NA	A0A0H4ITY2	Staphylococcus_phage	100.0	5.9e-101
WP_000141082.1|1140842_1141337_+	hypothetical protein	NA	R4IFM1	Staphylococcus_phage	100.0	4.3e-87
WP_001580347.1|1141357_1141699_+	hypothetical protein	NA	A0A2H4PQL5	Staphylococcus_phage	100.0	3.5e-56
WP_115284608.1|1141701_1144671_+|terminase	terminase	terminase	Q4ZAG7	Staphylococcus_virus	99.1	1.9e-262
WP_115284609.1|1144685_1145621_+|tail	phage tail protein	tail	R4IH41	Staphylococcus_phage	99.0	1.2e-178
WP_001144709.1|1145631_1147518_+	peptidase	NA	R4IGA4	Staphylococcus_phage	99.8	0.0e+00
WP_103205208.1|1147530_1149429_+	hypothetical protein	NA	Q4ZBQ2	Staphylococcus_phage	99.4	0.0e+00
WP_115284610.1|1149428_1151252_+|plate	BppU family phage baseplate upper protein	plate	Q4ZBH7	Staphylococcus_virus	98.8	0.0e+00
WP_000705909.1|1151251_1151629_+	DUF2977 domain-containing protein	NA	A9CRC6	Staphylococcus_phage	100.0	5.6e-55
WP_001790193.1|1151632_1151806_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_000466769.1|1151846_1152146_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	100.0	1.3e-46
WP_115284611.1|1152282_1154157_+	CHAP domain-containing protein	NA	Q4ZBP7	Staphylococcus_phage	99.5	0.0e+00
WP_115284612.1|1154169_1155408_+|plate	BppU family phage baseplate upper protein	plate	Q4ZB96	Staphylococcus_virus	98.3	1.0e-206
WP_000387943.1|1155412_1155808_+	hypothetical protein	NA	A0A0H4IPB8	Staphylococcus_phage	97.7	8.8e-67
WP_000354128.1|1155862_1156300_+|holin	phage holin	holin	S4SVG2	Staphylococcus_phage	99.3	4.1e-73
WP_115284613.1|1156280_1157726_+	CHAP domain-containing protein	NA	B2ZZ06	Staphylococcus_phage	99.2	5.9e-294
WP_000344116.1|1158391_1158703_+	DUF3467 domain-containing protein	NA	A0A2H4PQQ9	Staphylococcus_phage	100.0	4.1e-51
WP_001251276.1|1158689_1159073_+	hypothetical protein	NA	A0A2H4PQP6	Staphylococcus_phage	99.2	6.1e-65
WP_115276613.1|1159256_1161194_-	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000160859.1|1161396_1162449_-	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_115276614.1|1162657_1163341_+	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_001246698.1|1163340_1164417_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001220199.1|1164413_1165292_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_001548422.1|1165301_1166270_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_001242429.1|1166331_1167066_+	class B sortase	NA	NA	NA	NA	NA
WP_000670950.1|1167084_1167408_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001788617.1|1167444_1167552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435374.1|1167791_1168532_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_000003559.1|1168912_1169971_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_000908982.1|1169970_1172373_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
>prophage 8
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1361772	1369126	2935463	capsid,transposase	Staphylococcus_phage(85.71%)	11	NA	NA
WP_001789891.1|1361772_1361970_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	48.4	1.7e-10
WP_001789892.1|1362658_1362883_+	hypothetical protein	NA	A0A1W6JNK0	Staphylococcus_phage	71.0	4.3e-18
WP_001002340.1|1363176_1363383_+	hypothetical protein	NA	A0A2H4PQT0	Staphylococcus_phage	59.7	1.3e-13
WP_000195429.1|1363818_1364991_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_115284614.1|1365415_1365514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000006110.1|1365933_1366119_+	hypothetical protein	NA	A0A0F6N3H3	Staphylococcus_phage	78.7	2.4e-19
WP_000477492.1|1366630_1366735_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001791646.1|1366689_1366863_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956747.1|1366863_1367115_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000899337.1|1367160_1367745_+|capsid	minor capsid protein	capsid	Q4ZE35	Staphylococcus_virus	72.0	2.0e-30
WP_000195429.1|1367953_1369126_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 9
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1549001	1637408	2935463	capsid,head,portal,integrase,tRNA,plate,terminase,protease,tail,holin	Staphylococcus_phage(80.26%)	106	1590063:1590080	1635925:1635942
WP_000858789.1|1549001_1550294_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525078.1|1550615_1553309_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1553332_1554304_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1554290_1555493_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1555497_1556640_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1556880_1557198_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1557534_1558215_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1558286_1558874_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1558863_1559439_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_011443634.1|1559452_1560556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1560703_1562002_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1562011_1563076_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1563101_1564268_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1564653_1564854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1565062_1565512_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001817755.1|1565603_1566548_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1566564_1567290_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1567292_1567865_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1568295_1568568_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1568738_1569737_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1569753_1571064_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_115276631.1|1571285_1572461_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1572717_1572909_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1573025_1573142_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644391.1|1573172_1573832_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_115276632.1|1573908_1574877_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1574991_1575978_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1576138_1576255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1576379_1577840_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1577992_1579372_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1579361_1580315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1580422_1580671_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1580776_1581322_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1581600_1581720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1581918_1582833_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1582847_1583054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1583046_1583985_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1584042_1584960_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000464818.1|1585050_1585398_-	hypothetical protein	NA	Q4ZCJ7	Staphylococcus_virus	100.0	3.0e-26
WP_000180531.1|1585448_1586132_-	hypothetical protein	NA	A0A0A7S0U2	Clostridium_phage	28.3	1.1e-13
WP_000990948.1|1586128_1586311_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031924639.1|1588076_1589531_-	CHAP domain-containing protein	NA	I1W626	Staphylococcus_phage	99.0	4.1e-287
WP_000339141.1|1589541_1589844_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000466784.1|1589979_1590279_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1590063:1590080	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1590324_1590489_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1590481_1590871_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_115276633.1|1590870_1592337_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PDE3	Staphylococcus_phage	94.3	2.0e-257
WP_000429558.1|1592336_1594247_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1594262_1594553_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|1594552_1596136_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|1596144_1596969_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_031860857.1|1596968_1603169_-|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	99.8	0.0e+00
WP_000438833.1|1603182_1603341_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1603382_1603733_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1603790_1604246_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|1604337_1604979_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023802.1|1605013_1605409_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|1605409_1605811_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395501.1|1605807_1606140_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000050973.1|1606151_1606430_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142739.1|1606498_1607662_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
WP_115276634.1|1607673_1608447_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	99.6	2.7e-136
WP_001100669.1|1608430_1609669_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_115276635.1|1609673_1611365_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	99.6	0.0e+00
WP_000778932.1|1611354_1611660_-|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_015978060.1|1611788_1612103_-	HNH endonuclease	NA	Q4ZCU3	Staphylococcus_virus	100.0	2.5e-56
WP_031883903.1|1612259_1612697_-	transcriptional regulator	NA	A0A2I6PEB8	Staphylococcus_phage	100.0	1.0e-76
WP_115276636.1|1612709_1614077_-	DEAD/DEAH box helicase	NA	A0A0K1LKG3	Staphylococcus_phage	98.9	7.3e-262
WP_000665205.1|1614057_1614348_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_015978074.1|1614481_1614586_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_115276637.1|1614688_1617136_-	hypothetical protein	NA	B5WZN5	Staphylococcus_phage	99.9	0.0e+00
WP_000265258.1|1617188_1617389_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000595237.1|1617456_1617609_-	transcriptional activator RinB	NA	B5WZN3	Staphylococcus_phage	100.0	2.6e-19
WP_000483477.1|1617601_1617838_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195806.1|1617862_1618099_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	98.7	3.1e-35
WP_000185703.1|1618135_1618672_-	hypothetical protein	NA	S4V978	Staphylococcus_phage	98.9	1.0e-94
WP_000028425.1|1618664_1618847_-	hypothetical protein	NA	D2JGL7	Staphylococcus_phage	100.0	2.6e-26
WP_001065110.1|1618836_1619088_-	DUF1024 family protein	NA	W5R8J0	Staphylococcus_phage	100.0	4.9e-39
WP_000132193.1|1619102_1619345_-	hypothetical protein	NA	A0A2D1G5G2	Staphylococcus_phage	98.8	5.6e-40
WP_000235324.1|1619359_1619560_-	hypothetical protein	NA	A0A2I6PEM3	Staphylococcus_phage	100.0	2.5e-30
WP_000022728.1|1619562_1619820_-	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	100.0	2.6e-43
WP_031776133.1|1619819_1620221_-	phage DNA polymerase	NA	A0A2I6PEL5	Staphylococcus_phage	99.2	2.3e-67
WP_001164629.1|1620220_1620406_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001802096.1|1620418_1622371_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_000645045.1|1622438_1622996_-	DUF2815 family protein	NA	A0A2K9VBT2	Staphylococcus_phage	100.0	1.8e-97
WP_115276638.1|1623021_1624188_-	DUF2800 domain-containing protein	NA	A0A0K1LKE3	Staphylococcus_phage	99.7	1.6e-220
WP_031857745.1|1624184_1624547_-	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	99.2	2.4e-55
WP_000174994.1|1624561_1624885_-	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_001285954.1|1624963_1625125_-	DUF1270 domain-containing protein	NA	A7TWM3	Staphylococcus_phage	100.0	8.6e-21
WP_001124160.1|1625137_1625401_-	helix-turn-helix domain-containing protein	NA	A7TWG0	Staphylococcus_phage	100.0	5.7e-46
WP_031867168.1|1625425_1625641_-	hypothetical protein	NA	A0A2I6PF01	Staphylococcus_phage	97.2	2.7e-30
WP_001128433.1|1625695_1626061_+	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001025401.1|1626029_1626275_-	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001001383.1|1626324_1626543_-	hypothetical protein	NA	B5WZL5	Staphylococcus_phage	100.0	7.8e-33
WP_001148559.1|1626558_1627335_-	hypothetical protein	NA	M1RZB2	Staphylococcus_phage	100.0	1.5e-142
WP_001030311.1|1627360_1627588_-	hypothetical protein	NA	B5WZL3	Staphylococcus_phage	100.0	3.3e-34
WP_000801423.1|1627759_1628374_+	helix-turn-helix domain-containing protein	NA	B5WZL2	Staphylococcus_phage	100.0	9.0e-111
WP_000348133.1|1628389_1629310_+	exonuclease	NA	B5WZL1	Staphylococcus_phage	100.0	2.5e-173
WP_000705240.1|1629406_1629589_+	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_072433242.1|1629625_1629772_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	93.8	2.2e-15
WP_000191463.1|1629768_1630383_-	hypothetical protein	NA	A0A2I6PEZ0	Staphylococcus_phage	99.5	2.5e-105
WP_000264751.1|1630508_1631714_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	100.0	7.7e-223
WP_115276639.1|1631756_1633784_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.2	2.0e-114
WP_001548912.1|1633776_1634706_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1634950_1636702_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
1635925:1635942	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_115276640.1|1636682_1637408_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	4.6e-45
>prophage 10
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1693864	1702176	2935463	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1693864_1694650_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1694775_1695666_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1695675_1697022_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1697135_1698236_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1698238_1698916_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1699046_1700153_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1700376_1702176_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 11
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1771235	1780278	2935463	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1771235_1771754_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_115276648.1|1771775_1774049_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1774251_1776531_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1776805_1777066_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1777084_1778224_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1778246_1779272_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1779273_1780278_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 12
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	1905949	1988651	2935463	protease,transposase,tRNA	Staphylococcus_phage(93.33%)	76	NA	NA
WP_001050548.1|1905949_1912510_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_000836465.1|1912835_1913147_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_154801123.1|1913168_1915583_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.1	0.0e+00
WP_001025061.1|1915873_1917055_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1917164_1918118_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1918114_1918678_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1918797_1919199_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1920777_1921605_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1921607_1921727_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1921838_1922840_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1922961_1923426_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1923438_1924620_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1924630_1925263_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384181.1|1925269_1926301_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261677.1|1926793_1928296_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1928818_1929133_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1929132_1930425_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1930442_1930838_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1931132_1931987_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1932262_1932487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1932685_1933156_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1933268_1933712_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1933698_1934142_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1934437_1935073_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1935512_1936226_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1936485_1936788_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1937043_1937409_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1937405_1937759_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1939841_1940675_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1940886_1941795_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1941919_1943113_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_115276656.1|1943483_1945076_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000093392.1|1945211_1945697_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_115276709.1|1946008_1946707_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.1	2.0e-122
WP_000672014.1|1946711_1947185_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1947250_1947508_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1947504_1948506_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1948510_1949989_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1950147_1950603_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_115284617.1|1951636_1952632_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1952707_1953334_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1953374_1953719_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1953816_1954368_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1954585_1955227_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1955340_1955526_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1955527_1955704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1955714_1956098_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1956701_1956845_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1957047_1957143_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1957265_1957367_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002868972.1|1957714_1958074_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000195429.1|1959489_1960662_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000072576.1|1964906_1966106_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_011443644.1|1966098_1967838_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_001791797.1|1967818_1967953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1968017_1968737_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1968887_1969604_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1969705_1969813_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1969761_1970481_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1970601_1971321_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1971378_1972101_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039423.1|1972225_1972942_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	2.0e-125
WP_001092763.1|1973905_1974472_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1974945_1975644_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1975640_1976402_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1976398_1977091_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1977113_1978487_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1978496_1979015_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_115276657.1|1979030_1980275_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	99.8	2.6e-237
WP_001092605.1|1980267_1983261_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1983325_1983469_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1984205_1984349_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_115276658.1|1984590_1985574_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	98.8	6.8e-185
WP_000473596.1|1985575_1986511_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.4e-174
WP_001790220.1|1987310_1987850_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1987862_1988651_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
>prophage 13
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	2017174	2096277	2935463	capsid,head,portal,integrase,tRNA,plate,transposase,terminase,protease,tail,holin	Staphylococcus_phage(85.51%)	92	2087835:2087853	2100434:2100452
WP_000181398.1|2017174_2017645_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001789049.1|2017649_2018792_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_001144055.1|2018927_2019656_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_000649907.1|2019642_2021100_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063582.1|2021357_2022419_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_115276599.1|2022911_2024231_+|transposase	ISL3-like element IS1181 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.5	1.7e-50
WP_031784974.1|2024249_2024363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000110011.1|2032686_2033133_-	peroxide-responsive transcriptional repressor PerR	NA	NA	NA	NA	NA
WP_000869455.1|2033229_2034180_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_000939521.1|2034185_2034641_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA	NA
WP_001011598.1|2034721_2036011_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_001236371.1|2036303_2037398_+	aromatic acid exporter family protein	NA	NA	NA	NA	NA
WP_001791878.1|2037487_2037580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000597238.1|2037588_2039325_-	SAV1866 family putative multidrug efflux ABC transporter	NA	W8CYL7	Bacillus_phage	30.4	1.7e-53
WP_000251253.1|2039615_2040158_-	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_000284752.1|2040459_2041497_-	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_000379098.1|2041648_2042626_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_000886468.1|2042886_2043723_-	membrane protein	NA	NA	NA	NA	NA
WP_000535834.1|2043731_2045249_-	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_001294033.1|2045263_2045554_-	YfhH family protein	NA	NA	NA	NA	NA
WP_001124419.1|2045555_2046374_-	recombination regulator RecX	NA	NA	NA	NA	NA
WP_000830380.1|2046634_2047444_-	monofunctional peptidoglycan glycosyltransferase SgtB	NA	NA	NA	NA	NA
WP_000163283.1|2047784_2048300_-	type 1 glutamine amidotransferase	NA	NA	NA	NA	NA
WP_001005407.1|2048430_2048592_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100250272.1|2048938_2049019_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000180531.1|2049064_2049748_-	hypothetical protein	NA	A0A0A7S0U2	Clostridium_phage	28.3	1.1e-13
WP_000990948.1|2049744_2049927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031924639.1|2051692_2053147_-	CHAP domain-containing protein	NA	I1W626	Staphylococcus_phage	99.0	4.1e-287
WP_000339141.1|2053157_2053460_-|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	100.0	3.1e-48
WP_000466784.1|2053595_2053895_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000916020.1|2053940_2054105_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|2054097_2054487_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_115276633.1|2054486_2055953_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PDE3	Staphylococcus_phage	94.3	2.0e-257
WP_000429558.1|2055952_2057863_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|2057878_2058169_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000384474.1|2058168_2059752_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_001190533.1|2059760_2060585_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_031860857.1|2060584_2066785_-|tail	phage tail tape measure protein	tail	U5U762	Staphylococcus_phage	99.8	0.0e+00
WP_000438833.1|2066798_2066957_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|2066998_2067349_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|2067406_2067862_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807536.1|2067953_2068595_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_001023802.1|2068629_2069025_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|2069025_2069427_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395501.1|2069423_2069756_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	100.0	6.2e-58
WP_000050973.1|2069767_2070046_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142739.1|2070114_2071278_-|capsid	phage major capsid protein	capsid	A0A2I6PDD7	Staphylococcus_phage	100.0	9.4e-218
WP_115276634.1|2071289_2072063_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	99.6	2.7e-136
WP_001100669.1|2072046_2073285_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	100.0	6.9e-235
WP_115276635.1|2073289_2074981_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	99.6	0.0e+00
WP_000778932.1|2074970_2075276_-|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_015978060.1|2075404_2075719_-	HNH endonuclease	NA	Q4ZCU3	Staphylococcus_virus	100.0	2.5e-56
WP_031883903.1|2075875_2076313_-	transcriptional regulator	NA	A0A2I6PEB8	Staphylococcus_phage	100.0	1.0e-76
WP_115276660.1|2076325_2077693_-	DEAD/DEAH box helicase	NA	A0A0K1LKG3	Staphylococcus_phage	99.1	8.7e-263
WP_000665205.1|2077673_2077964_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_015978074.1|2078097_2078202_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_115276637.1|2078304_2080752_-	hypothetical protein	NA	B5WZN5	Staphylococcus_phage	99.9	0.0e+00
WP_000265258.1|2080804_2081005_-	DUF1514 family protein	NA	A0A2I6PF41	Staphylococcus_phage	100.0	2.9e-26
WP_000595237.1|2081072_2081225_-	transcriptional activator RinB	NA	B5WZN3	Staphylococcus_phage	100.0	2.6e-19
WP_000483477.1|2081217_2081454_-	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_000195806.1|2081478_2081715_-	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	98.7	3.1e-35
WP_000185703.1|2081751_2082288_-	hypothetical protein	NA	S4V978	Staphylococcus_phage	98.9	1.0e-94
WP_000028425.1|2082280_2082463_-	hypothetical protein	NA	D2JGL7	Staphylococcus_phage	100.0	2.6e-26
WP_001065110.1|2082452_2082704_-	DUF1024 family protein	NA	W5R8J0	Staphylococcus_phage	100.0	4.9e-39
WP_000177805.1|2082718_2082967_-	hypothetical protein	NA	A0A0K1LL46	Staphylococcus_phage	97.6	3.0e-41
WP_000111495.1|2082966_2083221_-	DUF3310 domain-containing protein	NA	A0A2I6PDN8	Staphylococcus_phage	96.4	1.8e-41
WP_000117792.1|2083220_2083580_-	hypothetical protein	NA	D2JGL0	Staphylococcus_phage	100.0	4.5e-62
WP_001187264.1|2083580_2083766_-	DUF3113 family protein	NA	D2JGK9	Staphylococcus_phage	100.0	7.0e-27
WP_000401950.1|2083765_2084173_-	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	100.0	1.7e-73
WP_001123684.1|2084182_2084404_-	DUF3269 family protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
WP_000628839.1|2084416_2084575_-	hypothetical protein	NA	A0A0H3U301	Staphylococcus_phage	98.1	4.5e-22
WP_114647922.1|2084571_2085357_-	ATP-binding protein	NA	A0A0H4J332	Staphylococcus_phage	99.6	4.2e-145
WP_115284618.1|2085369_2086125_-	helix-turn-helix domain-containing protein	NA	A0A1J0MGB2	Staphylococcus_phage	76.4	1.9e-78
WP_000414755.1|2086189_2086471_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_031928974.1|2086609_2087284_-	phi PV83 orf 19-like protein	NA	A1KX69	Staphylococcus_virus	99.6	1.5e-130
WP_001099010.1|2087295_2087739_-	single-stranded DNA-binding protein	NA	A0A2I6PD99	Staphylococcus_phage	95.9	3.2e-73
WP_000840496.1|2087735_2088386_-	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
2087835:2087853	attL	AATTTGTTCCTGGTATTTT	NA	NA	NA	NA
WP_000999048.1|2088386_2088923_-	hypothetical protein	NA	A0A2I6PD93	Staphylococcus_phage	100.0	1.7e-81
WP_000291075.1|2088935_2089196_-	DUF1108 family protein	NA	A0A059T5A3	Staphylococcus_phage	100.0	1.2e-43
WP_000066014.1|2089287_2089449_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	98.1	9.5e-20
WP_000594791.1|2089441_2089663_-	hypothetical protein	NA	A0A1X9H0Q4	Staphylococcus_phage	98.6	3.3e-31
WP_001803402.1|2089733_2090387_+	hypothetical protein	NA	Q4ZBF5	Staphylococcus_virus	99.5	1.3e-115
WP_000939499.1|2090396_2090540_-	hypothetical protein	NA	A0A0H4ITW0	Staphylococcus_phage	97.9	5.6e-16
WP_001148634.1|2090555_2091308_-	oxidoreductase	NA	A0A0E3T9K5	Staphylococcus_phage	99.2	4.8e-138
WP_000933365.1|2091309_2091495_-	helix-turn-helix transcriptional regulator	NA	A0A0H4IP57	Staphylococcus_phage	100.0	1.3e-25
WP_000394410.1|2091940_2092423_+	hypothetical protein	NA	A0A0N9BAX2	Staphylococcus_phage	100.0	1.1e-82
WP_033861758.1|2092523_2092703_-	hypothetical protein	NA	A0A0H3U490	Staphylococcus_phage	98.3	2.2e-25
WP_115276661.1|2092717_2093161_-	hypothetical protein	NA	Q6R853	Staphylococcus_virus	99.3	5.8e-75
WP_000213811.1|2093208_2093421_-	helix-turn-helix transcriptional regulator	NA	A7TWF1	Staphylococcus_phage	100.0	1.6e-30
WP_020807995.1|2093572_2094304_+	helix-turn-helix transcriptional regulator	NA	S4SVC5	Staphylococcus_phage	100.0	6.9e-134
WP_000392109.1|2094339_2095020_+	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_001145721.1|2095230_2096277_+|integrase	site-specific integrase	integrase	Q4ZE08	Staphylococcus_virus	100.0	4.2e-201
2100434:2100452	attR	AATTTGTTCCTGGTATTTT	NA	NA	NA	NA
>prophage 14
NZ_CP022908	Staphylococcus aureus strain 545 chromosome, complete genome	2935463	2850205	2867730	2935463	integrase	Streptococcus_phage(100.0%)	20	2836991:2837007	2872504:2872520
2836991:2837007	attL	CATTTTTTAAAATAGCT	NA	NA	NA	NA
WP_001291561.1|2850205_2851423_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5SEW7	Streptococcus_phage	100.0	3.7e-233
WP_000814511.1|2851504_2851708_-	excisionase	NA	A0A1S5SF07	Streptococcus_phage	100.0	4.0e-31
WP_000857133.1|2852168_2852399_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	2.7e-36
WP_000804885.1|2852395_2852818_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_063631289.1|2853322_2853676_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	99.1	3.0e-58
WP_000336323.1|2853735_2853903_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	68.0	1.6e-14
WP_017647393.1|2854021_2855941_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.4	0.0e+00
WP_001791010.1|2855956_2856073_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_115276699.1|2856317_2857253_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.4	5.9e-170
WP_000769868.1|2857249_2858251_-	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_115276711.1|2858159_2860313_-	YtxH domain-containing protein	NA	A0A1S5SF30	Streptococcus_phage	93.9	4.0e-312
WP_000331160.1|2860426_2862874_-	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	100.0	0.0e+00
WP_000506270.1|2862857_2863364_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	100.0	8.6e-91
WP_000342539.1|2863338_2863836_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_001009056.1|2863952_2864174_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000398284.1|2864216_2865422_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_000879507.1|2865444_2865597_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000813488.1|2865599_2866985_-	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000985015.1|2867013_2867400_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000420682.1|2867415_2867730_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
2872504:2872520	attR	AGCTATTTTAAAAAATG	NA	NA	NA	NA
