assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_003902395.1_ASM390239v2	NZ_CP040699	Salmonella enterica strain 7 isolate CFSAN047352 chromosome, complete genome	1	89673-89767	1	CRISPRCasFinder	no	cas3	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Unclear	ACCGGGTCTACTGGCTCAGGGTCTAC	26	0	0	NA	NA	NA	1	1	Unclear	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|31aa|up_5|NZ_CP040699.1_84750_84843_+,NA|160aa|up_4|NZ_CP040699.1_85043_85523_+,NA|38aa|up_2|NZ_CP040699.1_87049_87163_+,NA|155aa|up_0|NZ_CP040699.1_88083_88548_+,NA	NA|314aa|up_9|NZ_CP040699.1_78695_79637_+	PRK09956, PRK09956, ISNCY family transposase	NA|301aa|up_8|NZ_CP040699.1_79679_80582_-	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|232aa|up_7|NZ_CP040699.1_81087_81783_+	PRK15385, PRK15385, MgtC family protein	NA|909aa|up_6|NZ_CP040699.1_82002_84729_+	PRK15122, PRK15122, magnesium-transporting ATPase; Provisional	NA|31aa|up_5|NZ_CP040699.1_84750_84843_+	NA	NA|160aa|up_4|NZ_CP040699.1_85043_85523_+	NA	NA|227aa|up_3|NZ_CP040699.1_85751_86432_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|38aa|up_2|NZ_CP040699.1_87049_87163_+	NA	NA|286aa|up_1|NZ_CP040699.1_87215_88073_+	COG3710, CadC, DNA-binding winged-HTH domains [Transcription]	NA|155aa|up_0|NZ_CP040699.1_88083_88548_+	NA	NA|206aa|down_0|NZ_CP040699.1_91569_92187_-	COG2771, CsgD, DNA-binding HTH domain-containing proteins [Transcription]	NA|461aa|down_1|NZ_CP040699.1_94191_95574_+	PRK11462, PRK11462, putative transporter; Provisional	NA|773aa|down_2|NZ_CP040699.1_95585_97904_+	PRK10658, PRK10658, putative alpha-glucosidase; Provisional	NA|570aa|down_3|NZ_CP040699.1_98006_99716_-	pfam05170, AsmA, AsmA family	NA|464aa|down_4|NZ_CP040699.1_99836_101228_-	TIGR00801, Uric_acid_permease, uracil-xanthine permease	NA|402aa|down_5|NZ_CP040699.1_101455_102661_+	TIGR00210, Sodium/glutamate_symport_carrier_protein, sodium--glutamate symport carrier (gltS)	cas3|694aa|down_6|NZ_CP040699.1_102696_104778_-	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|230aa|down_7|NZ_CP040699.1_104783_105473_-	PRK11081, PRK11081, tRNA guanosine-2'-O-methyltransferase; Provisional	NA|704aa|down_8|NZ_CP040699.1_105477_107589_-	PRK11092, PRK11092, bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA|92aa|down_9|NZ_CP040699.1_107607_107883_-	TIGR00690, DNA-directed_RNA_polymerase_subunit_omega, DNA-directed RNA polymerase, omega subunit
GCF_003902395.1_ASM390239v2	NZ_CP040699	Salmonella enterica strain 7 isolate CFSAN047352 chromosome, complete genome	2	952813-954000	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	18,19,19	19	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA|73aa|down_3|NZ_CP040699.1_959248_959467_-	NA|179aa|up_9|NZ_CP040699.1_941360_941897_-	PRK15260, PRK15260, fimbrial protein SteF; Provisional	NA|157aa|up_8|NZ_CP040699.1_941893_942364_-	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional	NA|169aa|up_7|NZ_CP040699.1_942378_942885_-	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional	NA|258aa|up_6|NZ_CP040699.1_942904_943678_-	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional	NA|900aa|up_5|NZ_CP040699.1_943690_946390_-	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein	NA|196aa|up_4|NZ_CP040699.1_946469_947057_-	PRK15261, PRK15261, fimbrial protein SteA; Provisional	NA|267aa|up_3|NZ_CP040699.1_947662_948463_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP040699.1_948690_950328_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP040699.1_950410_951709_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP040699.1_951844_952516_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|121aa|down_0|NZ_CP040699.1_954983_955346_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_1|NZ_CP040699.1_955780_957580_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_2|NZ_CP040699.1_957579_959292_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|73aa|down_3|NZ_CP040699.1_959248_959467_-	NA	NA|245aa|down_4|NZ_CP040699.1_959393_960128_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP040699.1_960215_961169_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|down_6|NZ_CP040699.1_961613_964277_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|down_7|NZ_CP040699.1_964288_965845_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|down_8|NZ_CP040699.1_965841_966402_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|down_9|NZ_CP040699.1_966415_967474_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI
GCF_003902395.1_ASM390239v2	NZ_CP040699	Salmonella enterica strain 7 isolate CFSAN047352 chromosome, complete genome	3	970170-971114	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Type I-E	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	14,15,15	15	TypeI-E	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA,NA	NA|245aa|up_9|NZ_CP040699.1_959393_960128_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_8|NZ_CP040699.1_960215_961169_-	PRK15379, PRK15379, type III secretion system effector SopD	cas3|888aa|up_7|NZ_CP040699.1_961613_964277_+	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	cas8e|519aa|up_6|NZ_CP040699.1_964288_965845_+	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cse2gr11|187aa|up_5|NZ_CP040699.1_965841_966402_+	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|353aa|up_4|NZ_CP040699.1_966415_967474_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|249aa|up_3|NZ_CP040699.1_967484_968231_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP040699.1_968212_968863_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|307aa|up_1|NZ_CP040699.1_968859_969780_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP040699.1_969779_970073_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|349aa|down_0|NZ_CP040699.1_971128_972175_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP040699.1_972425_973334_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_2|NZ_CP040699.1_973343_974783_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP040699.1_974769_975375_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_4|NZ_CP040699.1_975392_975749_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP040699.1_975939_976251_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP040699.1_976269_976980_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP040699.1_976979_977459_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP040699.1_977455_978505_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP040699.1_978485_979247_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_003902395.1_ASM390239v2	NZ_CP040699	Salmonella enterica strain 7 isolate CFSAN047352 chromosome, complete genome	4	2914597-2914725	4	CRISPRCasFinder	no		cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	Orphan	AGCGAGTCAATCCCCCCCTCACCGCCATATTCAAG	35	0	0	NA	NA	NA	1	1	Orphan	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	NA|128aa|up_4|NZ_CP040699.1_2910671_2911055_+,NA	NA|165aa|up_9|NZ_CP040699.1_2904310_2904805_-	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp	NA|323aa|up_8|NZ_CP040699.1_2905351_2906320_+	PRK10262, PRK10262, thioredoxin reductase; Provisional	NA|589aa|up_7|NZ_CP040699.1_2906433_2908200_+	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|574aa|up_6|NZ_CP040699.1_2908200_2909922_+	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed	NA|235aa|up_5|NZ_CP040699.1_2909966_2910671_+	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed	NA|128aa|up_4|NZ_CP040699.1_2910671_2911055_+	NA	NA|73aa|up_3|NZ_CP040699.1_2910982_2911201_+	PRK00276, infA, translation initiation factor IF-1; Validated	NA|304aa|up_2|NZ_CP040699.1_2911291_2912203_-	PRK14997, PRK14997, LysR family transcriptional regulator; Provisional	NA|287aa|up_1|NZ_CP040699.1_2912311_2913172_+	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|226aa|up_0|NZ_CP040699.1_2913191_2913869_+	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|759aa|down_0|NZ_CP040699.1_2915422_2917699_-	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional	NA|107aa|down_1|NZ_CP040699.1_2917729_2918050_-	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed	NA|74aa|down_2|NZ_CP040699.1_2918373_2918595_+	PRK14998, PRK14998, cold shock-like protein CspD; Provisional	NA|649aa|down_3|NZ_CP040699.1_2918724_2920671_-	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB	NA|373aa|down_4|NZ_CP040699.1_2920667_2921786_-	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional	NA|317aa|down_5|NZ_CP040699.1_2921931_2922882_+	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown]	NA|553aa|down_6|NZ_CP040699.1_2922878_2924537_-	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair]	NA|300aa|down_7|NZ_CP040699.1_2924738_2925638_+	COG2431, COG2431, Predicted membrane protein [Function unknown]	NA|551aa|down_8|NZ_CP040699.1_2925781_2927434_+	PRK05290, PRK05290, hybrid cluster protein; Provisional	NA|323aa|down_9|NZ_CP040699.1_2927445_2928414_+	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional
