assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_004803715.2_ASM480371v2	NZ_CP039383	Luteimonas yindakuii strain S-1072 chromosome, complete genome	1	15847-15941	1	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	AACACGGTCGACAACACCTGGAC	23	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA|91aa|up_3|NZ_CP039383.2_12246_12519_-,NA|168aa|up_1|NZ_CP039383.2_14357_14861_+,NA|195aa|up_0|NZ_CP039383.2_14926_15511_+,NA|234aa|down_1|NZ_CP039383.2_18190_18892_+	NA|399aa|up_9|NZ_CP039383.2_7622_8819_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|221aa|up_8|NZ_CP039383.2_8983_9646_+	COG0810, TonB, Periplasmic protein TonB, links inner and outer membranes [Cell envelope biogenesis, outer membrane]	NA|253aa|up_7|NZ_CP039383.2_9723_10482_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|140aa|up_6|NZ_CP039383.2_10511_10931_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|138aa|up_5|NZ_CP039383.2_10943_11357_+	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion]	NA|248aa|up_4|NZ_CP039383.2_11488_12232_-	PRK05265, PRK05265, pyridoxine 5'-phosphate synthase; Provisional	NA|91aa|up_3|NZ_CP039383.2_12246_12519_-	NA	NA|482aa|up_2|NZ_CP039383.2_12626_14072_-	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|168aa|up_1|NZ_CP039383.2_14357_14861_+	NA	NA|195aa|up_0|NZ_CP039383.2_14926_15511_+	NA	NA|236aa|down_0|NZ_CP039383.2_17419_18127_+	cd02423, Peptidase_C39G, A sub-family of peptidase family C39	NA|234aa|down_1|NZ_CP039383.2_18190_18892_+	NA	NA|447aa|down_2|NZ_CP039383.2_18951_20292_+	pfam13557, Phenol_MetA_deg, Putative MetA-pathway of phenol degradation	NA|445aa|down_3|NZ_CP039383.2_20370_21705_-	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|372aa|down_4|NZ_CP039383.2_21872_22988_+	TIGR04470, hypothetical_protein_ALIPUT_00462, radical SAM mobile pair protein B	NA|261aa|down_5|NZ_CP039383.2_23088_23871_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|146aa|down_6|NZ_CP039383.2_23863_24301_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|239aa|down_7|NZ_CP039383.2_24328_25045_-	pfam13640, 2OG-FeII_Oxy_3, 2OG-Fe(II) oxygenase superfamily	NA|343aa|down_8|NZ_CP039383.2_25106_26135_-	PRK09293, PRK09293, class 1 fructose-bisphosphatase	NA|211aa|down_9|NZ_CP039383.2_26225_26858_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
GCF_004803715.2_ASM480371v2	NZ_CP039383	Luteimonas yindakuii strain S-1072 chromosome, complete genome	2	130451-130549	2	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	CCTTCTCCCGCACGCGGGAGAAGGTG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA|65aa|up_8|NZ_CP039383.2_121874_122069_+,NA|57aa|up_7|NZ_CP039383.2_122099_122270_+,NA|294aa|down_5|NZ_CP039383.2_136536_137418_-	NA|670aa|up_9|NZ_CP039383.2_119608_121618_+	cd09111, PLDc_ymdC_like_1, Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins	NA|65aa|up_8|NZ_CP039383.2_121874_122069_+	NA	NA|57aa|up_7|NZ_CP039383.2_122099_122270_+	NA	NA|159aa|up_6|NZ_CP039383.2_122385_122862_+	PRK10254, PRK10254, proofreading thioesterase EntH	NA|283aa|up_5|NZ_CP039383.2_122931_123780_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|339aa|up_4|NZ_CP039383.2_123769_124786_+	COG0429, COG0429, Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]	NA|693aa|up_3|NZ_CP039383.2_124864_126943_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|205aa|up_2|NZ_CP039383.2_126957_127572_+	cd00865, PEBP_bact_arch, PhosphatidylEthanolamine-Binding Protein (PEBP) domain present in bacteria and archaea	NA|266aa|up_1|NZ_CP039383.2_128008_128806_-	PRK00281, PRK00281, undecaprenyl-diphosphate phosphatase	NA|470aa|up_0|NZ_CP039383.2_129025_130435_+	PRK09469, glnA, glutamate--ammonia ligase	NA|247aa|down_0|NZ_CP039383.2_130637_131378_+	COG3023, ampD, N-acetyl-anhydromuramyl-L-alanine amidase [Cell envelope biogenesis, outer membrane]	NA|356aa|down_1|NZ_CP039383.2_132373_133441_+	COG3852, NtrB, Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]	NA|476aa|down_2|NZ_CP039383.2_133433_134861_+	TIGR01818, Nitrogen_assimilation_regulatory_protein, nitrogen regulation protein NR(I)	NA|185aa|down_3|NZ_CP039383.2_134979_135534_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|216aa|down_4|NZ_CP039383.2_135592_136240_+	pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC)	NA|294aa|down_5|NZ_CP039383.2_136536_137418_-	NA	NA|426aa|down_6|NZ_CP039383.2_137506_138784_+	PRK09268, PRK09268, acetyl-CoA C-acetyltransferase	NA|420aa|down_7|NZ_CP039383.2_138936_140196_-	COG3071, HemY, Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]	NA|259aa|down_8|NZ_CP039383.2_140300_141077_-	PRK08811, PRK08811, uroporphyrinogen-III synthase; Validated	NA|146aa|down_9|NZ_CP039383.2_141194_141632_+	pfam09500, YiiD_C, Putative thioesterase (yiiD_Cterm)
GCF_004803715.2_ASM480371v2	NZ_CP039383	Luteimonas yindakuii strain S-1072 chromosome, complete genome	3	1351695-1351812	3	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	ACGCCATGGCCAACAGGTCGGCACAGCAC	29	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA|124aa|up_9|NZ_CP039383.2_1336774_1337146_-,NA|91aa|down_2|NZ_CP039383.2_1356746_1357019_-,NA|260aa|down_3|NZ_CP039383.2_1357407_1358187_+,NA|161aa|down_4|NZ_CP039383.2_1358613_1359096_+,NA|137aa|down_5|NZ_CP039383.2_1359236_1359647_+,NA|188aa|down_7|NZ_CP039383.2_1361773_1362337_+,NA|97aa|down_8|NZ_CP039383.2_1362580_1362871_-	NA|124aa|up_9|NZ_CP039383.2_1336774_1337146_-	NA	NA|182aa|up_8|NZ_CP039383.2_1337142_1337688_-	pfam04519, Bactofilin, Polymer-forming cytoskeletal	NA|132aa|up_7|NZ_CP039383.2_1339733_1340129_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|114aa|up_6|NZ_CP039383.2_1340317_1340659_-	PRK10811, rne, ribonuclease E; Reviewed	NA|392aa|up_5|NZ_CP039383.2_1340783_1341959_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|951aa|up_4|NZ_CP039383.2_1342181_1345034_+	cd04848, Peptidases_S8_Autotransporter_serine_protease_like, Peptidase S8 family domain in Autotransporter serine proteases	NA|386aa|up_3|NZ_CP039383.2_1345103_1346261_-	cd01156, IVD, Isovaleryl-CoA dehydrogenase	NA|368aa|up_2|NZ_CP039383.2_1346404_1347508_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|519aa|up_1|NZ_CP039383.2_1347694_1349251_-	cd09111, PLDc_ymdC_like_1, Putative catalytic domain, repeat 1, of Escherichia coli uncharacterized protein ymdC and similar proteins	NA|686aa|up_0|NZ_CP039383.2_1349479_1351537_+	cd02619, Peptidase_C1, C1 Peptidase family (MEROPS database nomenclature), also referred to as the papain family; composed of two subfamilies of cysteine peptidases (CPs), C1A (papain) and C1B (bleomycin hydrolase)	NA|58aa|down_0|NZ_CP039383.2_1352036_1352210_+	pfam05478, Prominin, Prominin	NA|1241aa|down_1|NZ_CP039383.2_1352416_1356139_+	cd03678, MM_CoA_mutase_1, Coenzyme B12-dependent-methylmalonyl coenzyme A (CoA) mutase (MCM) family, unknown subfamily 1; composed of uncharacterized bacterial proteins containing a C-terminal MCM domain	NA|91aa|down_2|NZ_CP039383.2_1356746_1357019_-	NA	NA|260aa|down_3|NZ_CP039383.2_1357407_1358187_+	NA	NA|161aa|down_4|NZ_CP039383.2_1358613_1359096_+	NA	NA|137aa|down_5|NZ_CP039383.2_1359236_1359647_+	NA	NA|291aa|down_6|NZ_CP039383.2_1360695_1361568_+	pfam18475, PIN7, PIN domain	NA|188aa|down_7|NZ_CP039383.2_1361773_1362337_+	NA	NA|97aa|down_8|NZ_CP039383.2_1362580_1362871_-	NA	NA|126aa|down_9|NZ_CP039383.2_1363159_1363537_+	pfam08000, bPH_1, Bacterial PH domain
GCF_004803715.2_ASM480371v2	NZ_CP039383	Luteimonas yindakuii strain S-1072 chromosome, complete genome	4	2557552-2557639	4	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	GCCGCTGTCTGGACCCTCTCCCGCGTG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA|142aa|up_3|NZ_CP039383.2_2552221_2552647_+,NA|72aa|down_5|NZ_CP039383.2_2564810_2565026_+,NA|373aa|down_7|NZ_CP039383.2_2565804_2566923_+	NA|278aa|up_9|NZ_CP039383.2_2547050_2547884_-	pfam02578, Cu-oxidase_4, Multi-copper polyphenol oxidoreductase laccase	NA|337aa|up_8|NZ_CP039383.2_2547958_2548969_-	PRK11180, rluD, 23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA|286aa|up_7|NZ_CP039383.2_2549056_2549914_+	TIGR03302, OM_YfiO, outer membrane assembly lipoprotein YfiO	NA|296aa|up_6|NZ_CP039383.2_2550056_2550944_-	cd12916, VKOR_1, Vitamin K epoxide reductase family in bacteria and plants	NA|141aa|up_5|NZ_CP039383.2_2551201_2551624_+	COG4968, PilE, Tfp pilus assembly protein PilE [Cell motility and secretion / Intracellular trafficking and secretion]	NA|174aa|up_4|NZ_CP039383.2_2551695_2552217_+	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|142aa|up_3|NZ_CP039383.2_2552221_2552647_+	NA	NA|244aa|up_2|NZ_CP039383.2_2552643_2553375_+	COG4966, PilW, Tfp pilus assembly protein PilW [Cell motility and secretion / Intracellular trafficking and secretion]	NA|781aa|up_1|NZ_CP039383.2_2553371_2555714_+	pfam03961, FapA, Flagellar Assembly Protein A	NA|546aa|up_0|NZ_CP039383.2_2555718_2557356_-	PRK13981, PRK13981, NAD synthetase; Provisional	NA|130aa|down_0|NZ_CP039383.2_2557677_2558067_-	cd01038, Endonuclease_DUF559, Domain of unknown function, appears to be related to a diverse group of endonucleases	NA|291aa|down_1|NZ_CP039383.2_2558717_2559590_-	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|387aa|down_2|NZ_CP039383.2_2559727_2560888_-	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|585aa|down_3|NZ_CP039383.2_2561162_2562917_+	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|482aa|down_4|NZ_CP039383.2_2563123_2564569_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|72aa|down_5|NZ_CP039383.2_2564810_2565026_+	NA	NA|151aa|down_6|NZ_CP039383.2_2565290_2565743_+	PRK10574, PRK10574, putative major pilin subunit; Provisional	NA|373aa|down_7|NZ_CP039383.2_2565804_2566923_+	NA	NA|424aa|down_8|NZ_CP039383.2_2569280_2570552_+	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|289aa|down_9|NZ_CP039383.2_2570589_2571456_+	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
GCF_004803715.2_ASM480371v2	NZ_CP039383	Luteimonas yindakuii strain S-1072 chromosome, complete genome	5	2632353-2632468	5	CRISPRCasFinder	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	CTGAAGCCGTCGCCACGGCCTGCGATAGGCAA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA,NA|95aa|down_8|NZ_CP039383.2_2639753_2640038_+	NA|177aa|up_9|NZ_CP039383.2_2620517_2621048_-	PRK12846, PRK12846, peptide deformylase; Reviewed	NA|285aa|up_8|NZ_CP039383.2_2622353_2623208_-	COG1216, COG1216, Predicted glycosyltransferases [General function prediction only]	NA|746aa|up_7|NZ_CP039383.2_2624279_2626517_-	TIGR02517, Putative_type_II_secretion_system_protein_D, type II secretion system protein D	NA|276aa|up_6|NZ_CP039383.2_2626513_2627341_-	PRK06995, flhF, flagellar biosynthesis protein FlhF	NA|205aa|up_5|NZ_CP039383.2_2627330_2627945_-	pfam10741, T2SSM_b, Type II secretion system (T2SS), protein M subtype b	NA|391aa|up_4|NZ_CP039383.2_2627931_2629104_-	pfam05137, PilN, Fimbrial assembly protein (PilN)	NA|296aa|up_3|NZ_CP039383.2_2629207_2630095_-	COG3156, PulK, Type II secretory pathway, component PulK [Intracellular trafficking and secretion]	NA|261aa|up_2|NZ_CP039383.2_2630091_2630874_-	PRK08808, PRK08808, type II secretion system protein J	NA|163aa|up_1|NZ_CP039383.2_2630870_2631359_-	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|193aa|up_0|NZ_CP039383.2_2631355_2631934_-	COG4970, FimT, Tfp pilus assembly protein FimT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|406aa|down_0|NZ_CP039383.2_2632688_2633906_-	COG1459, PulF, Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]	NA|125aa|down_1|NZ_CP039383.2_2633915_2634290_-	cd10448, GIY-YIG_unchar_3, GIY-YIG domain of uncharacterized hypothetical protein found in bacteria	NA|576aa|down_2|NZ_CP039383.2_2634398_2636126_-	TIGR02533, Type_II_secretion_system_protein_E, type II secretion system protein E	NA|273aa|down_3|NZ_CP039383.2_2636311_2637130_+	pfam11101, DUF2884, Protein of unknown function (DUF2884)	NA|68aa|down_4|NZ_CP039383.2_2637286_2637490_+	pfam09791, Oxidored-like, Oxidoreductase-like protein, N-terminal	NA|349aa|down_5|NZ_CP039383.2_2637608_2638655_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|132aa|down_6|NZ_CP039383.2_2638716_2639112_-	pfam18856, baeRF_family12, Bacterial archaeo-eukaryotic release factor family 12	NA|113aa|down_7|NZ_CP039383.2_2639192_2639531_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|95aa|down_8|NZ_CP039383.2_2639753_2640038_+	NA	NA|149aa|down_9|NZ_CP039383.2_2640050_2640497_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]
GCF_004803715.2_ASM480371v2	NZ_CP039383	Luteimonas yindakuii strain S-1072 chromosome, complete genome	6	2790544-2790826	1	CRT	no		cas3,WYL,DEDDh,DinG,csa3	Orphan	CNNCGGCTCGGGCAGCAGCGGC	22	0	0	NA	NA	NA	4	4	Orphan	cas3,WYL,DEDDh,DinG,csa3	NA,NA|167aa|down_0|NZ_CP039383.2_2790905_2791406_-	NA|186aa|up_9|NZ_CP039383.2_2776694_2777252_-	pfam10001, DUF2242, Uncharacterized protein conserved in bacteria (DUF2242)	NA|259aa|up_8|NZ_CP039383.2_2777402_2778179_+	pfam05818, TraT, Enterobacterial TraT complement resistance protein	NA|404aa|up_7|NZ_CP039383.2_2778265_2779477_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|631aa|up_6|NZ_CP039383.2_2779601_2781494_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|408aa|up_5|NZ_CP039383.2_2781739_2782963_+	pfam00144, Beta-lactamase, Beta-lactamase	NA|280aa|up_4|NZ_CP039383.2_2783027_2783867_-	cd05355, SDR_c1, classical (c) SDR, subgroup 1	NA|389aa|up_3|NZ_CP039383.2_2783863_2785030_-	cd08152, y4iL_like, Catalase-like heme-binding proteins similar to the uncharacterized y4iL	NA|236aa|up_2|NZ_CP039383.2_2785210_2785918_-	pfam03797, Autotransporter, Autotransporter beta-domain	NA|279aa|up_1|NZ_CP039383.2_2786192_2787029_+	COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]	NA|892aa|up_0|NZ_CP039383.2_2787060_2789736_-	PRK09776, PRK09776, putative diguanylate cyclase; Provisional	NA|167aa|down_0|NZ_CP039383.2_2790905_2791406_-	NA	NA|315aa|down_1|NZ_CP039383.2_2791708_2792653_+	COG3546, COG3546, Mn-containing catalase [Inorganic ion transport and metabolism]	NA|533aa|down_2|NZ_CP039383.2_2792759_2794358_-	TIGR00895, transport_protein, benzoate transport	NA|117aa|down_3|NZ_CP039383.2_2794553_2794904_+	pfam05901, Excalibur, Excalibur calcium-binding domain	NA|272aa|down_4|NZ_CP039383.2_2794990_2795806_-	pfam13628, DUF4142, Domain of unknown function (DUF4142)	NA|896aa|down_5|NZ_CP039383.2_2796292_2798980_-	PRK09405, aceE, pyruvate dehydrogenase subunit E1; Reviewed	NA|603aa|down_6|NZ_CP039383.2_2799308_2801117_+	COG4251, COG4251, Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]	NA|147aa|down_7|NZ_CP039383.2_2801113_2801554_+	cd17557, REC_Rcp-like, phosphoacceptor receiver (REC) domain of cyanobacterial phytochrome response regulator Rcp and similar domains	NA|124aa|down_8|NZ_CP039383.2_2801556_2801928_+	cd00156, REC, phosphoacceptor receiver (REC) domain of response regulators (RRs) and pseudo response regulators (PRRs)	NA|421aa|down_9|NZ_CP039383.2_2802025_2803288_+	PLN03159, PLN03159, cation/H(+) antiporter 15; Provisional
