assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	1	633366-633505	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|336aa|up_9|NZ_CP035944.1_625831_626839_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|NZ_CP035944.1_627044_627923_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|NZ_CP035944.1_627931_628927_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|NZ_CP035944.1_629135_629660_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|NZ_CP035944.1_629653_630157_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|NZ_CP035944.1_630143_630446_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP035944.1_630496_630940_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP035944.1_630919_631438_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|NZ_CP035944.1_631565_632201_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP035944.1_632273_633314_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP035944.1_633518_634094_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP035944.1_634103_634694_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP035944.1_634713_635109_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP035944.1_635066_637103_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP035944.1_637167_638028_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP035944.1_638070_639162_-	pfam00419, Fimbrial, Fimbrial protein	NA|791aa|down_6|NZ_CP035944.1_639172_641545_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|264aa|down_7|NZ_CP035944.1_642972_643764_-	PRK09855, PRK09855, PTS N-acetylgalactosamine transporter subunit IID	NA|268aa|down_8|NZ_CP035944.1_643753_644557_-	PRK09757, PRK09757, PTS N-acetylgalactosamine transporter subunit IIC	NA|159aa|down_9|NZ_CP035944.1_644595_645072_-	PRK09756, PRK09756, PTS N-acetylgalactosamine transporter subunit IIB
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	2	661282-661533	1	PILER-CR	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTGGAGGAGCAGAAAGATGAATGACTGTCCACGACGCTATACCCAAAAGAAA	54	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|180aa|down_1|NZ_CP035944.1_663040_663580_-	NA|158aa|up_9|NZ_CP035944.1_650856_651330_-	PRK11425, PRK11425, PTS N-acetylgalactosamine transporter subunit IIB	NA|427aa|up_8|NZ_CP035944.1_651352_652633_-	PRK15458, PRK15458, tagatose 6-phosphate aldolase subunit KbaZ; Provisional	NA|270aa|up_7|NZ_CP035944.1_652881_653691_+	PRK09802, PRK09802, DeoR family transcriptional regulator	NA|155aa|up_6|NZ_CP035944.1_653745_654210_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|112aa|up_5|NZ_CP035944.1_654209_654545_-	PRK09974, PRK09974, type II toxin-antitoxin system PrlF family antitoxin	NA|524aa|up_4|NZ_CP035944.1_654693_656265_-	TIGR03248, galactar-dH20, galactarate dehydratase	NA|445aa|up_3|NZ_CP035944.1_656639_657974_+	TIGR00893, Probable_glucarate_transporter, D-galactonate transporter	NA|257aa|up_2|NZ_CP035944.1_657989_658760_+	PRK10558, PRK10558, alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional	NA|297aa|up_1|NZ_CP035944.1_658789_659680_+	PRK11559, garR, tartronate semialdehyde reductase; Provisional	NA|382aa|up_0|NZ_CP035944.1_659776_660922_+	PRK10342, PRK10342, glycerate kinase I; Provisional	NA|396aa|down_0|NZ_CP035944.1_661831_663019_-	PRK09716, PRK09716, YhaC family protein	NA|180aa|down_1|NZ_CP035944.1_663040_663580_-	NA	NA|115aa|down_2|NZ_CP035944.1_663835_664180_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|down_3|NZ_CP035944.1_664368_665307_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|down_4|NZ_CP035944.1_665405_666395_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|down_5|NZ_CP035944.1_666416_667748_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|down_6|NZ_CP035944.1_667773_668982_+	PRK12379, PRK12379, propionate kinase	NA|765aa|down_7|NZ_CP035944.1_669015_671310_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|down_8|NZ_CP035944.1_671323_671713_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|down_9|NZ_CP035944.1_671784_673149_+	PRK15040, PRK15040, L-serine ammonia-lyase
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	3	676114-676231	2	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP035944.1_676304_676469_-	NA|115aa|up_9|NZ_CP035944.1_663835_664180_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP035944.1_664368_665307_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP035944.1_665405_666395_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|444aa|up_6|NZ_CP035944.1_666416_667748_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP035944.1_667773_668982_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP035944.1_669015_671310_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP035944.1_671323_671713_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP035944.1_671784_673149_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP035944.1_673423_674755_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP035944.1_674782_676093_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP035944.1_676304_676469_-	NA	NA|234aa|down_1|NZ_CP035944.1_676491_677193_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP035944.1_677297_678194_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP035944.1_678244_678601_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP035944.1_678842_679208_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP035944.1_679500_680487_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP035944.1_680556_681039_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP035944.1_681134_681434_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP035944.1_681423_681828_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP035944.1_681830_682136_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	4	1049564-1050080	2,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP035944.1_1048273_1048414_-,NA	NA|434aa|up_9|NZ_CP035944.1_1038970_1040272_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP035944.1_1040319_1042554_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP035944.1_1042631_1042880_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP035944.1_1042879_1043215_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP035944.1_1043285_1044077_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP035944.1_1044304_1045942_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP035944.1_1046029_1047328_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP035944.1_1047387_1048260_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP035944.1_1048273_1048414_-	NA	NA|224aa|up_0|NZ_CP035944.1_1048552_1049224_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP035944.1_1050717_1052196_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP035944.1_1052222_1053500_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP035944.1_1053818_1054604_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP035944.1_1054673_1056128_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP035944.1_1056221_1057559_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP035944.1_1057536_1058316_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP035944.1_1058312_1059173_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP035944.1_1059320_1059896_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP035944.1_1059912_1060173_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP035944.1_1060163_1061435_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	5	1072466-1073104	3,4,2	PILER-CR,CRISPRCasFinder,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,10,10	10	Unclear	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|NZ_CP035944.1_1060163_1061435_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP035944.1_1061512_1061878_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP035944.1_1062193_1063993_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP035944.1_1063992_1065705_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP035944.1_1065778_1066513_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP035944.1_1066777_1066930_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|NZ_CP035944.1_1069780_1070527_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP035944.1_1070508_1071159_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP035944.1_1071155_1072079_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP035944.1_1072075_1072369_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP035944.1_1073185_1074223_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP035944.1_1074474_1075383_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP035944.1_1075384_1076812_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP035944.1_1076811_1077417_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP035944.1_1077466_1077790_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP035944.1_1077983_1078295_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP035944.1_1078313_1079024_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP035944.1_1079023_1079503_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP035944.1_1079499_1080549_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP035944.1_1080529_1081291_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	6	1602912-1603029	5	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|105aa|up_3|NZ_CP035944.1_1597992_1598307_-,NA	NA|300aa|up_9|NZ_CP035944.1_1589905_1590805_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|NZ_CP035944.1_1590997_1592188_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|NZ_CP035944.1_1592184_1593444_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|NZ_CP035944.1_1593433_1595062_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|NZ_CP035944.1_1595334_1596693_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|NZ_CP035944.1_1596697_1597774_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_3|NZ_CP035944.1_1597992_1598307_-	NA	NA|217aa|up_2|NZ_CP035944.1_1600726_1601377_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP035944.1_1601430_1601685_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP035944.1_1601684_1602815_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP035944.1_1603048_1605334_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP035944.1_1606029_1609782_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP035944.1_1609909_1610632_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP035944.1_1610778_1613406_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP035944.1_1613554_1615243_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP035944.1_1615239_1615863_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP035944.1_1616006_1620401_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP035944.1_1620401_1622051_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP035944.1_1622055_1622832_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP035944.1_1622905_1624090_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	7	2192539-2192662	6	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP035944.1_2201558_2201648_+	NA|471aa|up_9|NZ_CP035944.1_2181993_2183406_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP035944.1_2183961_2184171_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP035944.1_2184626_2185253_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP035944.1_2185273_2187376_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP035944.1_2187379_2188027_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP035944.1_2188090_2188759_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP035944.1_2188755_2189541_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP035944.1_2189544_2190357_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP035944.1_2190368_2191973_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP035944.1_2192098_2192404_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP035944.1_2192976_2194233_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP035944.1_2194273_2195647_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP035944.1_2195861_2196503_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP035944.1_2196542_2197691_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP035944.1_2197981_2199193_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP035944.1_2199305_2200238_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP035944.1_2200234_2201260_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP035944.1_2201558_2201648_+	NA	NA|390aa|down_8|NZ_CP035944.1_2201813_2202983_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP035944.1_2203128_2203710_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	8	2845336-2845427	7	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|503aa|up_9|NZ_CP035944.1_2832920_2834429_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP035944.1_2834850_2838813_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP035944.1_2838852_2839491_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP035944.1_2839778_2840870_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP035944.1_2840869_2841562_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP035944.1_2841573_2841960_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP035944.1_2841967_2842768_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP035944.1_2842777_2843368_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP035944.1_2843378_2843873_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP035944.1_2843893_2845222_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP035944.1_2845850_2846447_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP035944.1_2846467_2846695_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP035944.1_2846732_2847974_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP035944.1_2848265_2849525_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP035944.1_2849784_2850705_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP035944.1_2850704_2851010_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP035944.1_2851102_2851702_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP035944.1_2851698_2854245_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP035944.1_2854244_2855417_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP035944.1_2855546_2856239_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	9	3145106-3145250	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|94aa|up_7|NZ_CP035944.1_3140491_3140773_+,NA|201aa|up_5|NZ_CP035944.1_3141303_3141906_-,NA|62aa|up_4|NZ_CP035944.1_3142030_3142216_-,NA|56aa|up_3|NZ_CP035944.1_3142148_3142316_+,NA	NA|61aa|up_9|NZ_CP035944.1_3140134_3140317_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_8|NZ_CP035944.1_3140289_3140481_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_7|NZ_CP035944.1_3140491_3140773_+	NA	NA|74aa|up_6|NZ_CP035944.1_3140871_3141093_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_5|NZ_CP035944.1_3141303_3141906_-	NA	NA|62aa|up_4|NZ_CP035944.1_3142030_3142216_-	NA	NA|56aa|up_3|NZ_CP035944.1_3142148_3142316_+	NA	NA|73aa|up_2|NZ_CP035944.1_3142355_3142574_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP035944.1_3142551_3143622_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP035944.1_3143756_3145040_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP035944.1_3145273_3147535_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP035944.1_3147717_3149151_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP035944.1_3149226_3150279_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP035944.1_3150462_3151416_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP035944.1_3151456_3152452_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP035944.1_3152606_3153425_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP035944.1_3153425_3154484_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP035944.1_3154486_3155176_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP035944.1_3155175_3155949_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP035944.1_3156115_3156265_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	10	3642028-3642181	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CGCCTTATCCGGCCTACCGATCCAGCACAGGTTTGTAGGCATGATAAGACGCG	53	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|150aa|down_8|NZ_CP035944.1_3651758_3652208_-	NA|352aa|up_9|NZ_CP035944.1_3631853_3632909_+	PRK10159, PRK10159, phosphoporin PhoE	NA|134aa|up_8|NZ_CP035944.1_3632947_3633349_-	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|415aa|up_7|NZ_CP035944.1_3633406_3634651_-	PRK05077, frsA, esterase FrsA	NA|153aa|up_6|NZ_CP035944.1_3634742_3635201_-	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|486aa|up_5|NZ_CP035944.1_3635461_3636919_+	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|89aa|up_4|NZ_CP035944.1_3637275_3637542_-	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|151aa|up_3|NZ_CP035944.1_3637848_3638301_-	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|352aa|up_2|NZ_CP035944.1_3638297_3639353_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|257aa|up_1|NZ_CP035944.1_3639423_3640194_-	PRK06778, PRK06778, hypothetical protein; Validated	NA|580aa|up_0|NZ_CP035944.1_3640153_3641893_+	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|166aa|down_0|NZ_CP035944.1_3642210_3642708_-	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|253aa|down_1|NZ_CP035944.1_3642883_3643642_-	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|247aa|down_2|NZ_CP035944.1_3643933_3644674_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|256aa|down_3|NZ_CP035944.1_3644644_3645412_-	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|193aa|down_4|NZ_CP035944.1_3645617_3646196_-	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|815aa|down_5|NZ_CP035944.1_3646435_3648880_+	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|158aa|down_6|NZ_CP035944.1_3648922_3649396_-	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|257aa|down_7|NZ_CP035944.1_3649549_3650320_+	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|150aa|down_8|NZ_CP035944.1_3651758_3652208_-	NA	NA|1020aa|down_9|NZ_CP035944.1_3652219_3655279_-	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]
GCF_005484365.1_ASM548436v1	NZ_CP035944	Escherichia coli strain AR24.2b chromosome, complete genome	11	3832209-3832324	10	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|393aa|up_9|NZ_CP035944.1_3820224_3821403_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP035944.1_3821504_3821636_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP035944.1_3821724_3823380_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP035944.1_3823543_3824527_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP035944.1_3824502_3826113_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP035944.1_3826096_3826795_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP035944.1_3826908_3827673_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP035944.1_3827758_3828637_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP035944.1_3828975_3830676_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP035944.1_3830686_3832189_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP035944.1_3832388_3833084_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP035944.1_3833158_3835510_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP035944.1_3835674_3838581_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP035944.1_3838592_3839252_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP035944.1_3839368_3840184_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP035944.1_3840438_3842793_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP035944.1_3842845_3844132_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP035944.1_3844131_3845121_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP035944.1_3845117_3845939_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP035944.1_3845941_3846319_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
