The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	3628	56376	2855454	integrase,transposase	Streptococcus_phage(16.67%)	51	39347:39361	52174:52188
WP_002303668.1|3628_3832_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_002348989.1|3862_4009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348988.1|4015_4171_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_002303667.1|4446_5787_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.0	5.1e-66
WP_002330794.1|7759_7978_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_106914383.1|7998_8634_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	1.2e-17
WP_002303663.1|8826_9066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303662.1|9089_10613_-	zinc ABC transporter substrate-binding protein AdcA	NA	NA	NA	NA	NA
WP_002302412.1|10630_10753_-	putative metal homeostasis protein	NA	NA	NA	NA	NA
WP_002303661.1|10782_11766_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_002297320.1|11789_11939_-	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002297319.1|11959_12337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297318.1|12368_12548_-	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_002297316.1|12562_12832_-	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_002303659.1|13353_15096_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.1	4.5e-30
WP_002303657.1|15079_16834_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	24.8	1.3e-24
WP_002302405.1|16943_17513_-	MptD family putative ECF transporter S component	NA	NA	NA	NA	NA
WP_002305512.1|17530_18955_-	energy-coupling factor ABC transporter ATP-binding protein	NA	A0A1V0SGN0	Hokovirus	26.4	5.9e-20
WP_002297304.1|18956_19625_-	cobalt transporter	NA	NA	NA	NA	NA
WP_071875988.1|19755_20340_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302393.1|20670_20904_-	iron-dependent repressor	NA	NA	NA	NA	NA
WP_002297295.1|20918_21869_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002297294.1|21865_22708_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_002305510.1|22840_23566_-	metal ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	33.2	5.6e-19
WP_002302387.1|24358_25954_-	solute:sodium symporter family transporter	NA	NA	NA	NA	NA
WP_002302386.1|25976_26867_-	myo-inosose-2 dehydratase	NA	NA	NA	NA	NA
WP_002302385.1|26883_27909_-	inositol 2-dehydrogenase	NA	NA	NA	NA	NA
WP_002302384.1|27932_28940_-	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002330790.1|29052_30213_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002305508.1|30288_31743_-	CoA-acylating methylmalonate-semialdehyde dehydrogenase	NA	NA	NA	NA	NA
WP_002297404.1|32151_33402_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002305507.1|33589_34414_-	5-deoxy-glucuronate isomerase	NA	NA	NA	NA	NA
WP_002305506.1|34452_36369_-	3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	24.4	6.2e-25
WP_002305505.1|36379_37414_-	5-dehydro-2-deoxygluconokinase	NA	NA	NA	NA	NA
WP_002305504.1|37570_38587_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002346694.1|38688_38886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305503.1|39187_40177_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
39347:39361	attL	CGTTCGTTTGTCCAT	NA	NA	NA	NA
WP_002303714.1|40917_41898_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_002302368.1|41910_42789_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_138013240.1|44949_45324_+|transposase	transposase	transposase	Q9JMN8	Wolbachia_phage	34.6	1.6e-09
WP_002303710.1|45331_46240_+|transposase	IS110 family transposase	transposase	NA	NA	NA	NA
WP_071875986.1|46868_47120_+	Lrp/AsnC ligand binding domain-containing protein	NA	NA	NA	NA	NA
WP_002302358.1|47661_47820_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002303709.1|47891_49118_+|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_094899290.1|49707_51156_-	ATP-dependent DNA helicase RecG	NA	A0A1B3AYT3	Gordonia_phage	34.9	2.4e-61
WP_094899324.1|51301_52798_-	RNA-directed DNA polymerase	NA	Q2P9X6	Enterobacteria_phage	34.3	1.1e-69
52174:52188	attR	CGTTCGTTTGTCCAT	NA	NA	NA	NA
WP_086325426.1|52969_53215_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_086325425.1|53319_54093_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299593.1|54322_54571_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_094899292.1|54669_55020_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287525.1|55227_56376_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
>prophage 2
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	392334	441575	2855454	tRNA,transposase	Liberibacter_phage(50.0%)	42	NA	NA
WP_138013243.1|392334_393243_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_002348732.1|393464_396506_+	type I restriction endonuclease subunit R	NA	A0A220A398	Liberibacter_phage	23.2	4.0e-18
WP_002348733.1|396695_397280_+	DUF262 domain-containing protein	NA	NA	NA	NA	NA
WP_010782519.1|397276_398416_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002336645.1|400845_401466_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_002336646.1|401477_401936_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002331203.1|401954_402233_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002336647.1|402257_403625_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002331205.1|403639_404785_+	galactonate dehydratase	NA	Q6A202	Oenococcus_phage	33.4	1.2e-52
WP_002331206.1|404811_405303_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002345001.1|405745_406945_+	MFS transporter	NA	NA	NA	NA	NA
WP_002331208.1|407438_408197_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002331209.1|408364_409300_+	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_002336649.1|409296_410742_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002336650.1|410769_411225_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_002336651.1|411243_412218_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002336652.1|413034_413649_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_044382644.1|413928_414837_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_044382646.1|414939_415323_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002298023.1|416294_416945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138013244.1|417394_418333_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA	NA
WP_002291912.1|418345_419398_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002331196.1|419663_420299_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_002296391.1|420489_421281_+	peptide-methionine (S)-S-oxide reductase MsrA	NA	NA	NA	NA	NA
WP_002295755.1|422722_423220_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002340421.1|423258_423942_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296262.1|424288_424555_+	DUF960 domain-containing protein	NA	NA	NA	NA	NA
WP_002296261.1|424581_424881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296259.1|425054_425606_+	DUF1643 domain-containing protein	NA	NA	NA	NA	NA
WP_002296258.1|425751_426045_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002304106.1|426037_426334_+	peptidase	NA	NA	NA	NA	NA
WP_002296256.1|426407_427406_+	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_138013245.1|427492_428452_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294735.1|428550_429267_+	DUF4767 domain-containing protein	NA	NA	NA	NA	NA
WP_025478783.1|430808_432857_-	sulfatase-like hydrolase/transferase	NA	NA	NA	NA	NA
WP_002294732.1|434066_435308_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_002294730.1|435454_436090_+	DUF998 domain-containing protein	NA	NA	NA	NA	NA
WP_002294728.1|436280_437021_+|tRNA	tRNA pseudouridine(38-40) synthase TruA	tRNA	NA	NA	NA	NA
WP_002296909.1|437165_438803_-	membrane protein	NA	NA	NA	NA	NA
WP_080497382.1|438768_438954_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002346735.1|438935_439895_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_000997695.1|440396_441575_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
>prophage 3
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	986752	1066293	2855454	holin,portal,tRNA,head,protease,integrase,capsid,terminase,tail,transposase	Enterococcus_phage(26.32%)	94	1042335:1042350	1045686:1045701
WP_002296621.1|986752_989551_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	2.1e-74
WP_002286618.1|989599_991126_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.3	8.9e-75
WP_002286616.1|991140_991788_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286678.1|991971_992301_-	DUF4828 domain-containing protein	NA	NA	NA	NA	NA
WP_002286614.1|992477_993206_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
WP_002286612.1|993221_994235_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002286608.1|994234_995512_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.8	5.8e-35
WP_130032929.1|995574_998277_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286606.1|998428_998746_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002286604.1|998775_999096_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002286601.1|999203_1000664_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002286598.1|1000731_1000953_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286596.1|1000983_1001166_+	DUF3188 domain-containing protein	NA	NA	NA	NA	NA
WP_002286592.1|1001165_1001579_+	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
WP_002286589.1|1001701_1002883_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002286587.1|1003413_1004553_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.6e-95
WP_002296617.1|1004851_1005487_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296616.1|1005599_1006235_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303013.1|1006268_1006730_-	DUF4429 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	34.8	4.5e-06
WP_002296613.1|1006859_1007291_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002296612.1|1007308_1007629_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	40.2	2.0e-13
WP_002290310.1|1007927_1008704_+	phage antirepressor protein	NA	A0A1Q1PVU2	Staphylococcus_phage	53.8	1.1e-73
WP_002296611.1|1008718_1008922_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002286573.1|1008937_1009276_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_060804954.1|1009262_1009442_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286568.1|1009484_1009955_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286562.1|1010041_1010740_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.7e-25
WP_002286559.1|1010917_1011259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286557.1|1011251_1011923_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_002286553.1|1011928_1012615_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
WP_002286552.1|1012617_1013367_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_002286696.1|1013378_1013648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286695.1|1013809_1014112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296606.1|1014108_1014270_+	antitoxin	NA	NA	NA	NA	NA
WP_002286694.1|1014266_1014572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286550.1|1014571_1014928_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	3.1e-10
WP_002296604.1|1014887_1015133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286547.1|1015129_1015549_+	hypothetical protein	NA	D2IZL0	Enterococcus_phage	54.3	4.1e-30
WP_002286545.1|1015545_1016103_+	DUF1642 domain-containing protein	NA	A0A0C5KKV2	Enterococcus_phage	36.2	2.8e-10
WP_002286693.1|1016099_1016396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286542.1|1016472_1016886_+	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
WP_002300143.1|1017343_1017619_-	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	45.7	9.9e-17
WP_002311723.1|1018072_1018279_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296600.1|1018474_1018642_+	thymidylate synthase	NA	NA	NA	NA	NA
WP_002286540.1|1018667_1019012_+	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	57.1	3.8e-26
WP_002296599.1|1019016_1019298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286538.1|1019400_1019715_+|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
WP_002286533.1|1019692_1021387_+|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.6	3.0e-148
WP_002286530.1|1021406_1022585_+|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.4	5.4e-80
WP_002286527.1|1022547_1023234_+|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	39.7	1.0e-30
WP_002286525.1|1023233_1024394_+|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.1	1.8e-99
WP_002286524.1|1024403_1025279_+	hypothetical protein	NA	D2IYX3	Enterococcus_phage	74.2	5.6e-130
WP_002286523.1|1025275_1025587_+	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	42.1	6.3e-12
WP_002286522.1|1025576_1025930_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_002296598.1|1025919_1026321_+	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	33.3	1.1e-13
WP_002286516.1|1026313_1026718_+	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
WP_002286512.1|1026729_1027338_+	hypothetical protein	NA	Q8W5Z9	Listeria_phage	41.1	3.0e-34
WP_002286510.1|1027357_1027720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305377.1|1027722_1027905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286502.1|1027921_1031353_+|tail	phage tail tape measure protein	tail	A0A1D3SNL5	Enterococcus_phage	44.4	3.1e-67
WP_002286500.1|1031403_1032141_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002296595.1|1032150_1034442_+	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	30.0	1.6e-88
WP_002286495.1|1034465_1036592_+	hypothetical protein	NA	A0A060AI60	Enterococcus_phage	40.1	1.4e-62
WP_002286491.1|1036754_1037201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296594.1|1037202_1037340_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002286686.1|1037377_1037671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286683.1|1037667_1037892_+|holin	holin	holin	NA	NA	NA	NA
WP_002286484.1|1037888_1038914_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A139ZVY1	Enterococcus_phage	61.3	2.1e-64
WP_087046766.1|1039853_1041015_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002286474.1|1041937_1042345_+	hypothetical protein	NA	NA	NA	NA	NA
1042335:1042350	attL	AAAAAAATTAAGGAGA	NA	NA	NA	NA
WP_002296902.1|1042358_1042760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286473.1|1042761_1043133_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286680.1|1043168_1043471_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286470.1|1043719_1043920_-|integrase	tyrosine-type recombinase/integrase	integrase	Q9AZR0	Lactococcus_phage	75.7	4.6e-08
WP_002286469.1|1044224_1045457_-	aminopeptidase	NA	NA	NA	NA	NA
WP_002286467.1|1045710_1046280_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
1045686:1045701	attR	AAAAAAATTAAGGAGA	NA	NA	NA	NA
WP_002286465.1|1046457_1046898_-	flavodoxin	NA	NA	NA	NA	NA
WP_002294533.1|1047055_1047820_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_002286461.1|1047851_1048775_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_002286457.1|1048850_1049990_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_002286455.1|1049982_1050783_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002286453.1|1050782_1051610_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002321540.1|1051587_1052322_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002286449.1|1052421_1053288_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	62.5	3.7e-102
WP_002286442.1|1053301_1053874_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.2	8.3e-42
WP_002296544.1|1053895_1054924_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	43.2	2.2e-69
WP_002294531.1|1055021_1055873_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.0	1.3e-38
WP_002296543.1|1055907_1057941_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060805065.1|1057984_1059265_+	EpaQ family protein	NA	NA	NA	NA	NA
WP_002289081.1|1059474_1060281_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002296541.1|1060292_1061513_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	3.3e-11
WP_002296539.1|1061502_1063089_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002296538.1|1063127_1065266_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002297271.1|1065333_1066293_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
>prophage 4
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	1355763	1364814	2855454	transposase	Lysinibacillus_phage(16.67%)	9	NA	NA
WP_002297185.1|1355763_1357059_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002297115.1|1357228_1357606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|1357861_1358590_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|1358589_1358844_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288017.1|1358845_1359517_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002288015.1|1359517_1361740_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
WP_002288013.1|1361724_1363164_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002321731.1|1363195_1364239_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002288010.1|1364235_1364814_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 5
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	1640189	1692958	2855454	protease,integrase,transposase	Streptococcus_phage(16.67%)	59	1684676:1684691	1694397:1694412
WP_002287525.1|1640189_1641338_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|1641354_1641759_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_123835867.1|1642160_1642349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295138.1|1642875_1643349_+	DUF2975 domain-containing protein	NA	NA	NA	NA	NA
WP_002295139.1|1643357_1643585_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002295142.1|1644220_1644592_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291278.1|1644847_1645090_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002296679.1|1645121_1646024_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002291274.1|1646036_1646225_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_002296677.1|1646238_1646802_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002300977.1|1646839_1647733_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	46.0	5.2e-59
WP_002296674.1|1647810_1648749_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002296672.1|1648782_1649133_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002296671.1|1649165_1650068_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_002296670.1|1650060_1650918_-	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	27.1	1.3e-19
WP_002296669.1|1651251_1652061_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002296667.1|1652100_1652598_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002321681.1|1653242_1653566_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296665.1|1653729_1653984_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296663.1|1654053_1654299_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002296662.1|1654374_1654740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303842.1|1654800_1655364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296654.1|1658309_1659395_-	mannonate dehydratase	NA	NA	NA	NA	NA
WP_002296653.1|1659411_1659855_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002321678.1|1659888_1660242_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296650.1|1660353_1660755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296648.1|1660791_1661301_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002303107.1|1661322_1662180_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002296646.1|1662197_1663031_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002303106.1|1663044_1663842_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002321677.1|1663874_1664159_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002296641.1|1664155_1665157_-	2-hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	29.0	2.8e-24
WP_002296640.1|1665158_1666061_-	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	35.3	3.3e-53
WP_002296639.1|1666224_1667073_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296638.1|1667718_1667925_+	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_002296637.1|1668126_1669128_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	31.8	2.5e-09
WP_002311095.1|1669132_1671046_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
WP_002296633.1|1671876_1672317_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_138013276.1|1672342_1673365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002346735.1|1673422_1674382_+|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_002296631.1|1674570_1674927_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296629.1|1675224_1676199_-	LPXTG-anchored fibrinogen/nidogen-binding adhesin SgrA	NA	NA	NA	NA	NA
WP_002296628.1|1676394_1677234_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002296627.1|1677418_1678306_+	rotamase	NA	NA	NA	NA	NA
WP_002311093.1|1678899_1679595_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
WP_002296624.1|1679578_1679977_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002297404.1|1680385_1681636_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002296760.1|1681777_1682773_-	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
WP_002289423.1|1682790_1683345_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002289422.1|1683332_1683824_-	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289421.1|1683816_1685685_-	HTH domain-containing protein	NA	NA	NA	NA	NA
1684676:1684691	attL	AAAGGATACTTTTTTT	NA	NA	NA	NA
WP_002289420.1|1685703_1686504_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	2.6e-09
WP_002289418.1|1686727_1686943_+	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_002303864.1|1687081_1687567_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289415.1|1688022_1688436_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	31.5	2.1e-07
WP_002322258.1|1688572_1688833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303865.1|1688760_1689000_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321532.1|1688950_1689241_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288357.1|1691830_1692958_+|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.5	1.8e-109
1694397:1694412	attR	AAAAAAAGTATCCTTT	NA	NA	NA	NA
>prophage 6
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	1758284	1821574	2855454	tRNA,protease,transposase	Streptococcus_phage(21.43%)	54	NA	NA
WP_002296623.1|1758284_1759580_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_002296400.1|1759719_1761054_-	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_002296401.1|1761184_1761946_-	YdcF family protein	NA	NA	NA	NA	NA
WP_002296402.1|1761961_1762444_-	SprT family protein	NA	NA	NA	NA	NA
WP_002296403.1|1762463_1764644_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_002296404.1|1764787_1765519_-	serine/threonine protein phosphatase	NA	A7KV25	Bacillus_phage	30.8	1.7e-15
WP_002296405.1|1765587_1766529_-	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_002296407.1|1766708_1767077_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_002295194.1|1767687_1769079_-	L-cystine transporter	NA	NA	NA	NA	NA
WP_002291995.1|1769291_1769678_-	DUF1149 family protein	NA	NA	NA	NA	NA
WP_002295196.1|1769733_1770357_-	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_002295197.1|1770420_1771089_-	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_002322028.1|1771100_1771541_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295199.1|1771599_1772271_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_002287525.1|1772456_1773605_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|1773621_1774026_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002295200.1|1774346_1774745_-	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_002296408.1|1774741_1775515_-	DUF1538 domain-containing protein	NA	NA	NA	NA	NA
WP_002296409.1|1775511_1776195_-	DUF1538 domain-containing protein	NA	NA	NA	NA	NA
WP_002289130.1|1776361_1777249_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002289133.1|1778250_1779537_-	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_060805073.1|1779809_1780388_+	response regulator	NA	NA	NA	NA	NA
WP_002289135.1|1780387_1781317_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002289137.1|1783111_1783948_-	prephenate dehydratase	NA	NA	NA	NA	NA
WP_002289138.1|1783944_1784454_-	shikimate kinase	NA	NA	NA	NA	NA
WP_002289139.1|1784446_1785742_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002289140.1|1785754_1786846_-	prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_002289142.1|1786862_1788029_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	35.3	1.6e-39
WP_002289143.1|1788030_1789095_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_002289144.1|1789127_1790150_-	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA	NA
WP_002320911.1|1790481_1790691_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289516.1|1790808_1791783_-	beta-galactosidase	NA	NA	NA	NA	NA
WP_002289518.1|1791763_1793647_-	glycoside hydrolase family 2	NA	L0N6M2	Herpes_simplex_virus	34.4	1.1e-98
WP_002296412.1|1793664_1795890_-	alpha-galactosidase	NA	NA	NA	NA	NA
WP_002296414.1|1796004_1797039_+	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296415.1|1797105_1798119_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	23.3	7.9e-11
WP_002288466.1|1798196_1798385_-	hypothetical protein	NA	A0A218MNE0	uncultured_virus	50.9	2.6e-08
WP_002297185.1|1798908_1800204_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002297218.1|1800478_1801774_+|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002295229.1|1801868_1801997_-	30S ribosomal protein S9	NA	NA	NA	NA	NA
WP_002288467.1|1801999_1803373_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	D0R096	Streptococcus_phage	55.9	7.1e-140
WP_002288473.1|1804547_1805978_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_002317639.1|1805974_1807447_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_002288477.1|1807446_1807752_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_002323115.1|1807857_1809894_-	NAD-dependent DNA ligase LigA	NA	A0A289ZTZ3	Serratia_phage	37.1	4.8e-100
WP_002319708.1|1809910_1812145_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	40.1	9.5e-126
WP_002317636.1|1812299_1813859_+	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_002323114.1|1813969_1815901_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_002288484.1|1815918_1816833_-	1-phosphofructokinase	NA	NA	NA	NA	NA
WP_002323503.1|1816829_1817582_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002294422.1|1817740_1817950_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288487.1|1817960_1819289_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288491.1|1819653_1820241_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_002294425.1|1820323_1821574_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.5	5.5e-147
>prophage 7
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	1944515	2003803	2855454	tRNA,protease,transposase	Streptococcus_phage(40.0%)	60	NA	NA
WP_002347404.1|1944515_1945001_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002326253.1|1945023_1945782_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.9	6.5e-26
WP_002322842.1|1945797_1946976_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	48.9	5.1e-102
WP_002326254.1|1947205_1949326_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.3	6.3e-220
WP_127817623.1|1950847_1951078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326255.1|1952575_1953301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288586.1|1953290_1953800_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288588.1|1953869_1955318_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
WP_002288595.1|1956013_1956364_-	SdpI family protein	NA	NA	NA	NA	NA
WP_002293945.1|1956507_1957281_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002293947.1|1957855_1958038_+	hypothetical protein	NA	NA	NA	NA	NA
WP_085838153.1|1958122_1959076_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002323892.1|1959319_1959634_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321266.1|1959919_1960159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060806716.1|1960520_1960781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289618.1|1960966_1961464_-	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_002289619.1|1961593_1962304_-	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002289620.1|1962316_1963981_-	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002300930.1|1964185_1964848_-	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002303949.1|1964857_1965673_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002288989.1|1965934_1966378_-	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA	NA
WP_002321036.1|1966511_1966850_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002302962.1|1966837_1967215_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002322902.1|1967438_1968632_+	MFS transporter	NA	NA	NA	NA	NA
WP_010729581.1|1968797_1969178_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002303955.1|1969810_1970266_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293154.1|1970233_1970431_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130032945.1|1970427_1971600_-	class C sortase	NA	NA	NA	NA	NA
WP_002288981.1|1971804_1972620_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002303960.1|1973230_1974244_-	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_002303962.1|1974274_1974733_-	cell wall anchor	NA	NA	NA	NA	NA
WP_002303963.1|1974729_1977057_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002288972.1|1977698_1977812_+|protease	CAAX amino protease	protease	NA	NA	NA	NA
WP_002288970.1|1977899_1978193_-	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002311684.1|1978229_1978415_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286913.1|1978450_1978798_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002293717.1|1978933_1979695_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002293716.1|1979684_1980206_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002290277.1|1981290_1981542_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002290274.1|1981553_1981829_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002293714.1|1982081_1982636_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002297192.1|1982714_1983236_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293710.1|1983239_1983818_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_002293709.1|1983929_1985348_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002293708.1|1985368_1985707_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_002297194.1|1985666_1986170_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293705.1|1986300_1987005_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002303966.1|1987001_1988738_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	1.2e-27
WP_099745856.1|1991315_1991498_-	RNA helicase	NA	NA	NA	NA	NA
WP_002289807.1|1993133_1994024_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_002300070.1|1994220_1994703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289810.1|1994914_1995280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002326708.1|1995370_1995688_-	SdpI family protein	NA	NA	NA	NA	NA
WP_076720001.1|1996429_1997389_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	1.7e-10
WP_002301623.1|1997511_1998486_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	7.1e-25
WP_002297404.1|1998896_2000147_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002295273.1|2000432_2000690_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008266934.1|2000921_2001335_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_000997695.1|2001591_2002770_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002295743.1|2002894_2003803_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	2229351	2235024	2855454	portal,head,capsid,terminase,tail	uncultured_Caudovirales_phage(50.0%)	7	NA	NA
WP_002296483.1|2229351_2229687_-|head	phage head closure protein	head	V5UQC7	Enterococcus_phage	35.6	4.7e-13
WP_002296484.1|2229673_2229958_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_002296485.1|2230013_2231537_-|capsid	phage major capsid protein	capsid	A0A1W6JPR8	Staphylococcus_phage	37.4	1.4e-48
WP_002296486.1|2231529_2232705_-|portal	phage portal protein	portal	A0A2H4J5A4	uncultured_Caudovirales_phage	35.6	3.2e-64
WP_002317249.1|2232708_2232894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_103021673.1|2232859_2234554_-|terminase	terminase large subunit	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	43.8	9.1e-129
WP_002296488.1|2234550_2235024_-|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
>prophage 9
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	2266829	2322977	2855454	tRNA,integrase,transposase	Bacillus_phage(15.38%)	44	2267805:2267821	2297444:2297460
WP_000222572.1|2266829_2267783_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
2267805:2267821	attL	AAAAATAAAATTTTATT	NA	NA	NA	NA
WP_002289406.1|2267816_2269046_-	GTPase HflX	NA	NA	NA	NA	NA
WP_002289405.1|2269047_2269965_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002289404.1|2269968_2270706_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	40.0	2.3e-12
WP_002289403.1|2270796_2271324_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289402.1|2271503_2272097_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.6	8.9e-55
WP_002289401.1|2272200_2272686_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_002296291.1|2272838_2273036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289400.1|2273130_2274891_-	multidrug efflux ABC transporter subunit EfrB	NA	W8CYL7	Bacillus_phage	28.6	2.5e-52
WP_002296290.1|2274887_2276618_-	multidrug efflux ABC transporter subunit EfrA	NA	W8CYL7	Bacillus_phage	27.6	2.1e-43
WP_002287947.1|2277010_2277223_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_002287948.1|2277224_2278904_+	ribonuclease J	NA	NA	NA	NA	NA
WP_073119932.1|2278914_2279199_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294067.1|2279157_2279358_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	71.2	3.7e-21
WP_000868132.1|2279790_2280876_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_001557544.1|2280872_2282765_+|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000361059.1|2282771_2283149_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_002360186.1|2283609_2284764_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_094467217.1|2285095_2287063_+	ABC-F type ribosomal protection protein OptrA	NA	A0A2K9L3Z8	Tupanvirus	28.5	1.8e-51
WP_024378353.1|2287992_2288355_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001092058.1|2289600_2290263_+	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_105466976.1|2291093_2291747_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_002294071.1|2291736_2293050_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_002287953.1|2293359_2296005_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.9	4.0e-163
WP_002287954.1|2296397_2297045_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002287955.1|2297617_2298829_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
2297444:2297460	attR	AATAAAATTTTATTTTT	NA	NA	NA	NA
WP_002287957.1|2300150_2301872_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_002287958.1|2302070_2302631_-	haloacid dehalogenase	NA	A0A0H3UZF4	Geobacillus_virus	45.1	2.3e-28
WP_002287959.1|2302656_2303496_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002287960.1|2303529_2304363_-	DUF72 domain-containing protein	NA	NA	NA	NA	NA
WP_002287961.1|2304594_2305563_+	asparaginase	NA	NA	NA	NA	NA
WP_002287962.1|2305717_2306455_-	acyl-ACP thioesterase	NA	NA	NA	NA	NA
WP_002287963.1|2306470_2307304_-	phosphotransferase	NA	NA	NA	NA	NA
WP_002294080.1|2307505_2308834_-	aminopeptidase C	NA	R4TV59	Phaeocystis_globosa_virus	38.1	7.3e-73
WP_002287965.1|2309923_2310553_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_002304454.1|2310572_2310755_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287966.1|2310666_2311041_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_086956687.1|2311249_2312411_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002322034.1|2316052_2316250_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287172.1|2318583_2318946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287231.1|2319019_2319400_-	S1 RNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002296072.1|2319481_2320657_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002287167.1|2320733_2321318_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	43.4	2.0e-27
WP_002297404.1|2321726_2322977_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
>prophage 10
NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	2855454	2470275	2503727	2855454	protease,bacteriocin,transposase	uncultured_virus(15.38%)	32	NA	NA
WP_002296840.1|2470275_2471463_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002288864.1|2471875_2473501_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	2.2e-156
WP_002288862.1|2473551_2473836_-	co-chaperone GroES	NA	A0A221S4M3	uncultured_virus	40.2	2.0e-12
WP_002288860.1|2474060_2474723_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002288858.1|2474798_2476091_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002288856.1|2476260_2476890_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_002288854.1|2476992_2477802_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	3.1e-34
WP_002288853.1|2477856_2478726_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288852.1|2478726_2480043_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288851.1|2480039_2481875_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	4.0e-37
WP_002288850.1|2481879_2482584_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
WP_002288847.1|2482773_2483634_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.4	2.7e-12
WP_002322652.1|2483620_2484190_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_000222572.1|2484819_2485773_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002321654.1|2485769_2485916_-|bacteriocin	EntF family bacteriocin induction factor	bacteriocin	NA	NA	NA	NA
WP_002287810.1|2486019_2486331_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_002304799.1|2486332_2486530_-	enterocin	NA	NA	NA	NA	NA
WP_002287807.1|2486923_2488651_-	ABC transporter permease/substrate binding protein	NA	NA	NA	NA	NA
WP_002287805.1|2488643_2489837_-	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.0	1.2e-29
WP_002287801.1|2490023_2490668_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002304795.1|2490615_2490807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290587.1|2490761_2490896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287799.1|2490897_2493030_-	ferrous iron transport protein B	NA	NA	NA	NA	NA
WP_002287797.1|2493026_2493500_-	ferrous iron transport protein A	NA	NA	NA	NA	NA
WP_002287795.1|2493900_2494125_+	glutaredoxin-like protein NrdH	NA	A0A0M7REK7	Lactobacillus_phage	42.7	1.7e-11
WP_002287793.1|2494283_2496443_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	63.2	3.8e-265
WP_002287792.1|2496492_2497458_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	70.4	3.4e-128
WP_002287791.1|2497546_2498686_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_002287788.1|2498994_2499708_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	43.7	6.5e-20
WP_002287787.1|2499961_2500663_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_002290558.1|2500896_2502429_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.0	3.3e-45
WP_002295743.1|2502818_2503727_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
>prophage 1
NZ_CP040237	Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence	210997	25321	133390	210997	transposase,holin,integrase	Bacillus_phage(18.52%)	105	60084:60099	138050:138068
WP_060811263.1|25321_26281_+|transposase	IS30-like element IS6770 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	3.0e-36
WP_002311551.1|26774_27062_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311552.1|27079_27502_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033583488.1|27521_29114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002316755.1|29369_29564_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297404.1|29699_30950_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002311557.1|31359_33732_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	28.9	1.1e-10
WP_002353044.1|33792_35253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002353045.1|35263_35707_+	topoisomerase	NA	NA	NA	NA	NA
WP_002295629.1|37714_38311_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002340481.1|38323_39223_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_002295625.1|39731_39989_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311565.1|40147_40282_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_002295623.1|40424_40685_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	1.2e-11
WP_002295619.1|41133_41340_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293542.1|41339_41591_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002311567.1|41606_42044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_024635938.1|42263_42464_+	hypothetical protein	NA	NA	NA	NA	NA
WP_060804903.1|42479_42668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002314432.1|42725_42992_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002340480.1|43001_43235_+	DUF2786 domain-containing protein	NA	NA	NA	NA	NA
WP_002335346.1|43577_43760_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002340479.1|43749_43971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002290556.1|45966_46734_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_002290555.1|47221_47647_+	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA	NA
WP_002290554.1|47663_48179_+	galactose-6-phosphate isomerase subunit LacB	NA	A0A222YX14	Synechococcus_phage	36.0	3.3e-05
WP_002340477.1|48189_49122_+	tagatose-6-phosphate kinase	NA	NA	NA	NA	NA
WP_002290551.1|49124_50105_+	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002290550.1|50132_50450_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002340476.1|50449_52156_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002290548.1|52297_53704_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	29.0	3.6e-46
WP_002305107.1|53726_53999_+	DUF3884 family protein	NA	NA	NA	NA	NA
WP_002303235.1|54019_54919_+	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_002326839.1|58556_59466_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002300833.1|59868_61815_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
60084:60099	attL	TTTGATTTCATCGGTA	NA	NA	NA	NA
WP_002300835.1|61817_62273_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
60084:60099	attL	TTTGATTTCATCGGTA	NA	NA	NA	NA
WP_002300836.1|62286_63615_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002300838.1|63648_63933_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002300840.1|63934_64450_+	YjbQ family protein	NA	NA	NA	NA	NA
WP_002300841.1|64465_65128_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
WP_002300842.1|65134_65707_+	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002300843.1|65893_67414_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	31.6	1.1e-48
WP_002305884.1|67656_67842_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_002300846.1|67825_68008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301839.1|68961_69561_+|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	36.1	1.3e-29
WP_002322465.1|69624_70224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002354485.1|70253_70940_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_002305879.1|71268_72141_-	ROK family protein	NA	NA	NA	NA	NA
71868:71883	attR	TACCGATGAAATCAAA	NA	NA	NA	NA
WP_002352509.1|72404_74351_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
71868:71883	attR	TACCGATGAAATCAAA	NA	NA	NA	NA
WP_002302078.1|74535_75975_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.1	1.4e-16
WP_002302077.1|75976_76939_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
WP_060807298.1|76941_77124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086953894.1|78632_80059_-|transposase	IS3-like element ISEfa10 family transposase	transposase	A0A1B1P773	Bacillus_phage	40.2	2.3e-48
WP_002301718.1|80301_80757_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.6	1.3e-13
WP_002325009.1|80777_81011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289255.1|81342_81573_-	resolvase	NA	NA	NA	NA	NA
WP_002289254.1|81802_82621_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289253.1|82781_83471_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002289252.1|83484_84987_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002300328.1|84999_85476_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_086956687.1|85972_87135_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002322543.1|87400_87592_-	fructokinase	NA	NA	NA	NA	NA
WP_002305874.1|87637_87886_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287870.1|88252_88771_+	ClbS/DfsB family four-helix bundle protein	NA	NA	NA	NA	NA
WP_002313170.1|89113_89317_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002301591.1|90846_91932_+	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_000222572.1|92039_92993_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
WP_002301126.1|93123_94374_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_138013295.1|94392_95319_-	haloacid dehalogenase-like hydrolase	NA	NA	NA	NA	NA
WP_002301128.1|95397_96393_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002301130.1|96408_97578_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002301131.1|97593_98328_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_086956687.1|99098_100261_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002301811.1|100829_102122_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	41.0	6.1e-32
WP_002313174.1|102395_102656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|102828_104001_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_002300493.1|104161_105331_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002300494.1|105655_106975_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002285815.1|106971_107625_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	33.2	4.0e-24
WP_002349129.1|107686_107827_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348630.1|108753_109470_-	aminotransferase class V-fold PLP-dependent enzyme	NA	Q2XUY6	environmental_halophage	50.0	4.5e-45
WP_002302256.1|109519_109729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302261.1|111385_112417_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	34.6	1.8e-26
WP_002313180.1|112423_113254_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002302265.1|113250_114057_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002302267.1|114062_114887_-	type I phosphodiesterase/nucleotide pyrophosphatase	NA	NA	NA	NA	NA
WP_002302268.1|114876_115977_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002302270.1|116154_116940_+	histidinol phosphate phosphatase	NA	NA	NA	NA	NA
WP_002330694.1|116972_117356_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077828694.1|117431_117563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002322470.1|117531_117768_+	peptidylprolyl isomerase	NA	NA	NA	NA	NA
WP_077828693.1|117779_117947_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302275.1|117845_118817_-	radical SAM protein	NA	NA	NA	NA	NA
WP_002340465.1|119468_121091_+|transposase	IS1182 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	47.5	2.7e-122
WP_002301195.1|121376_122753_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002298083.1|122752_123409_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.1	1.3e-22
WP_002301194.1|123418_124696_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_087121905.1|124945_126107_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	4.1e-80
WP_002330699.1|126137_126587_-	TlpA family protein disulfide reductase	NA	NA	NA	NA	NA
WP_010706480.1|126742_127093_-	hypothetical protein	NA	NA	NA	NA	NA
WP_102829664.1|127512_128674_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.2	9.2e-80
WP_138013300.1|129267_129564_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002330700.1|130812_131364_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301108.1|131419_131974_-|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_085807902.1|132436_133390_+|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	29.0	2.0e-11
138050:138068	attR	AAAACTTTGCAACAGAACC	NA	NA	NA	NA
>prophage 2
NZ_CP040237	Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence	210997	137383	202670	210997	transposase	Streptococcus_phage(46.43%)	58	NA	NA
WP_010729766.1|137383_137995_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.7	7.9e-99
WP_002351514.1|138055_138652_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	31.4	2.9e-13
WP_002296127.1|139313_140861_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	1.7e-44
WP_002287659.1|140962_141316_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
WP_002285758.1|141305_141500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_076720031.1|142455_144801_-	S8 family serine peptidase	NA	NA	NA	NA	NA
WP_080497384.1|144815_145958_-	ATP-binding protein	NA	R4TQL5	Phaeocystis_globosa_virus	24.5	1.2e-15
WP_138013296.1|146003_146822_-	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
WP_000195429.1|146813_147986_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001028141.1|148115_149555_-	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A0N9SKF6	Staphylococcus_phage	100.0	8.5e-285
WP_000393259.1|149555_149948_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_000195429.1|150004_151177_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_002380753.1|151283_152774_-	replication protein RepR	NA	NA	NA	NA	NA
WP_002380754.1|153167_153407_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010714231.1|153650_153764_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	88.2	3.4e-08
WP_001038792.1|153768_154506_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
WP_001814874.1|154630_154714_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_002401483.1|155389_156253_-	toxin zeta	NA	NA	NA	NA	NA
WP_000301765.1|156254_156527_-	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
WP_002295735.1|156543_156759_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	98.6	1.4e-31
WP_118215883.1|156829_157726_-	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	99.3	3.3e-154
WP_000085862.1|158122_158254_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
WP_001038792.1|158258_158996_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
WP_001809736.1|159120_159216_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_000635249.1|159264_159504_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	81.5	6.8e-22
WP_130006275.1|159631_161776_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	98.8	2.0e-269
WP_076720021.1|162096_162312_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_076720020.1|162289_162874_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	52.2	1.0e-42
WP_125278162.1|163444_164500_-	TIGR00341 family protein	NA	NA	NA	NA	NA
WP_125278163.1|164691_165297_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	33.3	1.5e-17
WP_076720015.1|165325_167206_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_138013297.1|167198_167948_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296840.1|168124_169312_-|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_138013298.1|169404_169665_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002291076.1|170385_171507_-	class C sortase	NA	NA	NA	NA	NA
WP_076720012.1|171503_172700_-	class C sortase	NA	NA	NA	NA	NA
WP_076720010.1|172785_174273_-	SpaH/EbpB family LPXTG-anchored major pilin	NA	NA	NA	NA	NA
WP_076720009.1|174337_175069_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002319817.1|179505_180186_-|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_002292681.1|181973_182522_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292680.1|182522_183380_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
WP_076713767.1|183665_183953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002292678.1|183942_184272_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_106914394.1|184444_185125_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	97.8	6.5e-126
WP_138013299.1|187556_188429_-	ROK family protein	NA	NA	NA	NA	NA
WP_016629104.1|188445_189918_-	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_002313079.1|189931_190780_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002322555.1|190776_191643_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002322554.1|191685_193044_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010729506.1|193138_194110_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	22.4	1.2e-05
WP_002313084.1|195144_195750_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	32.6	3.6e-19
WP_002340501.1|195795_195975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002348862.1|196868_197078_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295743.1|197582_198491_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_010729753.1|198549_200352_-	exonuclease DNA polymerase III epsilon subunit	NA	A0A0A7RWA3	Clostridium_phage	30.4	7.6e-33
WP_002342384.1|200414_201257_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331328.1|201272_201494_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_085910366.1|201983_202670_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.9e-127
>prophage 1
NZ_CP040238	Enterococcus faecium strain VB3025 plasmid unnamed2, complete sequence	142820	10601	52813	142820	transposase,protease,integrase	Streptococcus_phage(55.56%)	48	1620:1635	19955:19970
1620:1635	attL	TCAATAAATCTTCATC	NA	NA	NA	NA
WP_000361059.1|10601_10979_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001557544.1|10985_12878_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000868132.1|12874_13960_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	33.9	4.0e-13
WP_016922209.1|14078_14720_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_002320756.1|15543_16104_-	SLATT domain-containing protein	NA	NA	NA	NA	NA
WP_002347527.1|16123_16945_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_106914365.1|17098_18277_+|transposase	IS256 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.3	1.2e-29
WP_002320829.1|18449_18632_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320828.1|18628_18976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010733708.1|18968_20294_-	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	44.2	3.8e-98
19955:19970	attR	TCAATAAATCTTCATC	NA	NA	NA	NA
WP_002352923.1|20810_22037_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321352.1|22008_23643_-	hypothetical protein	NA	NA	NA	NA	NA
WP_125308478.1|23662_24556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321530.1|24810_25131_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060763495.1|25163_26282_-	hypothetical protein	NA	F0PIJ1	Enterococcus_phage	48.8	5.3e-85
WP_125308480.1|26310_27105_-	hypothetical protein	NA	F0PIJ0	Enterococcus_phage	33.7	3.2e-23
WP_125308483.1|27181_27370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_125308486.1|28480_28738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_125308489.1|28740_28971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_125308493.1|29142_30186_-	glycosyhydrolase	NA	NA	NA	NA	NA
WP_125308496.1|30364_30619_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320843.1|30809_31025_-	hypothetical protein	NA	NA	NA	NA	NA
WP_125308499.1|31076_31991_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320845.1|31990_32890_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_002320846.1|32889_33477_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002320847.1|33640_33832_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347462.1|33904_34807_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002350127.1|34823_35300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_125308502.1|35315_35915_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_125308504.1|36473_36953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_125308507.1|36971_37601_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002353144.1|37597_38974_-	cell division protein FtsK	NA	G1FGP1	Mycobacterium_phage	42.5	1.7e-48
WP_002354485.1|39327_40014_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_001096887.1|40374_41169_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_000627290.1|41261_41804_-	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	100.0	8.9e-94
WP_001255866.1|41800_42709_-	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_000662263.1|42741_43476_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_000228166.1|43456_44326_-	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	95.8	4.3e-159
WP_000567888.1|44428_44674_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_000085862.1|45831_45963_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
WP_001038792.1|45967_46705_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.2	7.0e-134
WP_001814874.1|46829_46913_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_002368882.1|46933_47203_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	81.5	7.6e-22
WP_000343406.1|47892_50880_-|transposase	Tn3 family transposase	transposase	A0A125RQ78	Bacillus_phage	38.3	7.3e-206
WP_002321606.1|51004_51610_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	33.2	1.2e-19
WP_000824191.1|51654_51822_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000366408.1|51855_52155_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001224538.1|52195_52813_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
>prophage 2
NZ_CP040238	Enterococcus faecium strain VB3025 plasmid unnamed2, complete sequence	142820	57133	86257	142820	transposase	Bacillus_phage(33.33%)	27	NA	NA
WP_002354485.1|57133_57820_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_000222573.1|59073_60033_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.1	2.0e-32
WP_000053907.1|60056_60353_-	replication control protein PrgN	NA	NA	NA	NA	NA
WP_000947691.1|60487_61981_-	replication protein RepR	NA	NA	NA	NA	NA
WP_000429439.1|62592_63546_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	26.1	7.7e-16
WP_001196543.1|63517_63793_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000199136.1|63985_64240_+|transposase	transposase	transposase	A0A1P8CWP5	Bacillus_phage	47.6	2.1e-13
WP_077828739.1|64221_64605_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	45.5	1.6e-12
WP_086956687.1|64645_65807_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_073120187.1|65908_66481_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.1	5.0e-55
WP_002360715.1|66377_66617_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000170424.1|66953_67526_-	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	46.0	6.8e-36
WP_000599739.1|67541_68147_-	cell filamentation protein	NA	NA	NA	NA	NA
WP_002354485.1|68344_69031_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_002405437.1|69703_71644_+	tetracycline resistance ribosomal protection protein Tet(S)	NA	A0A2K5B2A5	Erysipelothrix_phage	78.7	6.0e-294
WP_005228365.1|71731_71899_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	64.0	8.1e-14
WP_029756604.1|72412_72769_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	60.9	3.4e-25
WP_000343406.1|73419_76407_-|transposase	Tn3 family transposase	transposase	A0A125RQ78	Bacillus_phage	38.3	7.3e-206
WP_000516404.1|76720_77206_-	glycopeptide resistance protein VanZ-A	NA	NA	NA	NA	NA
WP_105467056.1|77358_78270_-	VanY-A/VanY-F/VanY-M family D-Ala-D-Ala carboxypeptidase	NA	NA	NA	NA	NA
WP_000402347.1|78697_79306_-	D-Ala-D-Ala dipeptidase VanX-A	NA	NA	NA	NA	NA
WP_001079845.1|79311_80343_-	D-alanine--(R)-lactate ligase VanA	NA	NA	NA	NA	NA
WP_001059542.1|80335_81304_-	D-lactate dehydrogenase VanH-A	NA	M1HUW8	Acanthocystis_turfacea_Chlorella_virus	33.1	3.5e-40
WP_002305818.1|81518_82673_-	VanA-type vancomycin resistance histidine kinase VanS	NA	W8CYF6	Bacillus_phage	23.3	1.5e-13
WP_001280781.1|82650_83346_-	VanA-type vancomycin resistance DNA-binding response regulator VanR	NA	W8CYM9	Bacillus_phage	37.7	4.9e-36
WP_001226076.1|83559_84135_-	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	34.8	9.0e-20
WP_002354485.1|85570_86257_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
