assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005517315.1_ASM551731v1	NZ_CP040238	Enterococcus faecium strain VB3025 plasmid unnamed2, complete sequence	1	20470-20700	1,1,1	CRISPRCasFinder,CRT,PILER-CR	no	c2c10_CAS-V-U3	c2c10_CAS-V-U3,cas14j	Type V-U3	ATTTGAGAAACATGCTGTTTTATATGGTTCTAAAAC,ATGCTGTTTTATATGGTTCTAAA,ACAATTTGAGAAACATGCTGTTTTATATGGTTCTAAAAC	36,23,39	2	2	20569-20598|20569-20595	NZ_CP040237.1_4865-4836|NZ_CP040237.1_4865-4839	NA:NA:NA	3,3,2	3	TypeV-U3	RT,cas14j,cas3,DEDDh,cas2,DinG,csa3,c2c10_CAS-V-U3	NA|126aa|up_9|NZ_CP040238.1_10601_10979_-,NA|61aa|up_2|NZ_CP040238.1_18449_18632_-,NA|116aa|up_1|NZ_CP040238.1_18628_18976_-,c2c10_CAS-V-U3|409aa|down_0|NZ_CP040238.1_20810_22037_-,NA|298aa|down_2|NZ_CP040238.1_23662_24556_-,NA|107aa|down_3|NZ_CP040238.1_24810_25131_-,NA|373aa|down_4|NZ_CP040238.1_25163_26282_-,NA|265aa|down_5|NZ_CP040238.1_26310_27105_-,NA|63aa|down_6|NZ_CP040238.1_27181_27370_-,NA|86aa|down_7|NZ_CP040238.1_28480_28738_-,NA|77aa|down_8|NZ_CP040238.1_28740_28971_-	NA|126aa|up_9|NZ_CP040238.1_10601_10979_-	NA	NA|631aa|up_8|NZ_CP040238.1_10985_12878_-	cd01187, INT_tnpB_C_Tn554, Putative Transposase B from transposon Tn554, C-terminal catalytic domain	NA|362aa|up_7|NZ_CP040238.1_12874_13960_-	cd01186, INT_tnpA_C_Tn554, Putative Transposase A from transposon Tn554, C-terminal catalytic domain	NA|214aa|up_6|NZ_CP040238.1_14078_14720_-	cd08071, MPN_DUF2466, Mov34/MPN/PAD-1 family	NA|187aa|up_5|NZ_CP040238.1_15543_16104_-	pfam18186, SLATT_4, SMODS and SLOG-associating 2TM effector domain family 4	NA|274aa|up_4|NZ_CP040238.1_16123_16945_-	pfam18144, SMODS, Second Messenger Oligonucleotide or Dinucleotide Synthetase domain	NA|393aa|up_3|NZ_CP040238.1_17098_18277_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|61aa|up_2|NZ_CP040238.1_18449_18632_-	NA	NA|116aa|up_1|NZ_CP040238.1_18628_18976_-	NA	NA|442aa|up_0|NZ_CP040238.1_18968_20294_-	cd01700, PolY_Pol_V_umuC, umuC subunit of DNA Polymerase V	c2c10_CAS-V-U3|409aa|down_0|NZ_CP040238.1_20810_22037_-	NA	NA|545aa|down_1|NZ_CP040238.1_22008_23643_-	pfam07926, TPR_MLP1_2, TPR/MLP1/MLP2-like protein	NA|298aa|down_2|NZ_CP040238.1_23662_24556_-	NA	NA|107aa|down_3|NZ_CP040238.1_24810_25131_-	NA	NA|373aa|down_4|NZ_CP040238.1_25163_26282_-	NA	NA|265aa|down_5|NZ_CP040238.1_26310_27105_-	NA	NA|63aa|down_6|NZ_CP040238.1_27181_27370_-	NA	NA|86aa|down_7|NZ_CP040238.1_28480_28738_-	NA	NA|77aa|down_8|NZ_CP040238.1_28740_28971_-	NA	NA|348aa|down_9|NZ_CP040238.1_29142_30186_-	pfam13529, Peptidase_C39_2, Peptidase_C39 like family
GCF_005517315.1_ASM551731v1	NZ_CP040236	Enterococcus faecium strain VB3025 chromosome, complete genome	1	2506744-2506853	1	CRISPRCasFinder	no		RT,cas14j,cas3,DEDDh,cas2,DinG,csa3	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	RT,cas14j,cas3,DEDDh,cas2,DinG,csa3,c2c10_CAS-V-U3	NA,NA	NA|322aa|up_9|NZ_CP040236.1_2496492_2497458_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_8|NZ_CP040236.1_2497546_2498686_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_7|NZ_CP040236.1_2498994_2499708_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_6|NZ_CP040236.1_2499961_2500663_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_5|NZ_CP040236.1_2500896_2502429_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|303aa|up_4|NZ_CP040236.1_2502818_2503727_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|350aa|up_3|NZ_CP040236.1_2503820_2504870_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP040236.1_2504951_2505641_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP040236.1_2505746_2506115_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP040236.1_2506167_2506671_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP040236.1_2507080_2507770_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP040236.1_2507873_2508296_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP040236.1_2508638_2509307_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP040236.1_2509319_2510192_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP040236.1_2510282_2511302_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|182aa|down_5|NZ_CP040236.1_2512439_2512985_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_6|NZ_CP040236.1_2513085_2513256_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_7|NZ_CP040236.1_2513279_2513432_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_8|NZ_CP040236.1_2513593_2514238_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily	NA|168aa|down_9|NZ_CP040236.1_2514293_2514797_-	pfam06177, QueT, QueT transporter
GCF_005517315.1_ASM551731v1	NZ_CP040237	Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence	1	430-557	1	CRISPRCasFinder	no		DEDDh	Orphan	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	Orphan	RT,cas14j,cas3,DEDDh,cas2,DinG,csa3,c2c10_CAS-V-U3	NA,NA|111aa|down_0|NZ_CP040237.1_1881_2214_+,NA|97aa|down_2|NZ_CP040237.1_3192_3483_+,NA|78aa|down_3|NZ_CP040237.1_3674_3908_+,NA|254aa|down_7|NZ_CP040237.1_7799_8561_+,NA|87aa|down_8|NZ_CP040237.1_8573_8834_+	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|111aa|down_0|NZ_CP040237.1_1881_2214_+	NA	NA|114aa|down_1|NZ_CP040237.1_2832_3174_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|97aa|down_2|NZ_CP040237.1_3192_3483_+	NA	NA|78aa|down_3|NZ_CP040237.1_3674_3908_+	NA	NA|224aa|down_4|NZ_CP040237.1_4313_4985_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|660aa|down_5|NZ_CP040237.1_5037_7017_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|251aa|down_6|NZ_CP040237.1_7031_7784_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|254aa|down_7|NZ_CP040237.1_7799_8561_+	NA	NA|87aa|down_8|NZ_CP040237.1_8573_8834_+	NA	NA|697aa|down_9|NZ_CP040237.1_8830_10921_+	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain
