assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005518055.1_ASM551805v1	NZ_CP040255	Mycobacterium avium subsp. hominissuis strain 101115 chromosome, complete genome	1	2278315-2278446	1	CRISPRCasFinder	no		WYL,cas4,DEDDh,csa3,DinG,cas3,RT	Orphan	CGCTCGCCGAGGGGCAGGCGCTCGC	25	0	0	NA	NA	NA	2	2	Orphan	WYL,cas4,DEDDh,csa3,DinG,cas3,RT	NA|100aa|up_9|NZ_CP040255.1_2267342_2267642_-,NA|566aa|down_4|NZ_CP040255.1_2283912_2285610_+,NA|99aa|down_9|NZ_CP040255.1_2290249_2290546_-	NA|100aa|up_9|NZ_CP040255.1_2267342_2267642_-	NA	NA|385aa|up_8|NZ_CP040255.1_2268193_2269348_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|326aa|up_7|NZ_CP040255.1_2269363_2270341_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|123aa|up_6|NZ_CP040255.1_2270549_2270918_-	cd07264, VOC_like, uncharacterized subfamily of vicinal oxygen chelate (VOC) family	NA|405aa|up_5|NZ_CP040255.1_2270958_2272173_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|310aa|up_4|NZ_CP040255.1_2272420_2273350_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|549aa|up_3|NZ_CP040255.1_2273389_2275036_-	PRK08322, PRK08322, acetolactate synthase large subunit	NA|473aa|up_2|NZ_CP040255.1_2275116_2276535_+	PRK09406, gabD1, succinic semialdehyde dehydrogenase; Reviewed	NA|312aa|up_1|NZ_CP040255.1_2276601_2277537_-	PRK08326, PRK08326, R2-like ligand-binding oxidase	NA|228aa|up_0|NZ_CP040255.1_2277533_2278217_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|570aa|down_0|NZ_CP040255.1_2278453_2280163_-	cd00567, ACAD, Acyl-CoA dehydrogenase	NA|327aa|down_1|NZ_CP040255.1_2280288_2281269_+	pfam02126, PTE, Phosphotriesterase family	NA|409aa|down_2|NZ_CP040255.1_2281299_2282526_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|419aa|down_3|NZ_CP040255.1_2282647_2283904_+	pfam11271, DUF3068, Protein of unknown function (DUF3068)	NA|566aa|down_4|NZ_CP040255.1_2283912_2285610_+	NA	NA|389aa|down_5|NZ_CP040255.1_2285593_2286760_-	cd03801, GT4_PimA-like, phosphatidyl-myo-inositol mannosyltransferase	NA|256aa|down_6|NZ_CP040255.1_2286841_2287609_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|494aa|down_7|NZ_CP040255.1_2287654_2289136_+	cd07139, ALDH_AldA-Rv0768, Mycobacterium tuberculosis aldehyde dehydrogenase  AldA-like	NA|196aa|down_8|NZ_CP040255.1_2289660_2290248_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|99aa|down_9|NZ_CP040255.1_2290249_2290546_-	NA
GCF_005518055.1_ASM551805v1	NZ_CP040255	Mycobacterium avium subsp. hominissuis strain 101115 chromosome, complete genome	2	3968562-3968805	2	CRISPRCasFinder	no		WYL,cas4,DEDDh,csa3,DinG,cas3,RT	Orphan	GCGGCGGGTGCCGGAGCGGACGGCG	25	0	0	NA	NA	NA	4	4	Orphan	WYL,cas4,DEDDh,csa3,DinG,cas3,RT	NA|67aa|up_9|NZ_CP040255.1_3961250_3961451_+,NA|49aa|up_0|NZ_CP040255.1_3967921_3968068_+,NA	NA|67aa|up_9|NZ_CP040255.1_3961250_3961451_+	NA	NA|781aa|up_8|NZ_CP040255.1_3961594_3963937_+	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only]	NA|212aa|up_7|NZ_CP040255.1_3964019_3964655_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|238aa|up_6|NZ_CP040255.1_3964662_3965376_-	PRK00481, PRK00481, NAD-dependent deacetylase; Provisional	NA|122aa|up_5|NZ_CP040255.1_3965413_3965779_+	COG1725, COG1725, Predicted transcriptional regulators [Transcription]	NA|175aa|up_4|NZ_CP040255.1_3965830_3966355_-	COG3797, COG3797, Uncharacterized protein conserved in bacteria [Function unknown]	NA|148aa|up_3|NZ_CP040255.1_3966429_3966873_+	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme	NA|75aa|up_2|NZ_CP040255.1_3966931_3967156_+	pfam17227, DUF5302, Family of unknown function (DUF5302)	NA|192aa|up_1|NZ_CP040255.1_3967317_3967893_+	TIGR03252, TIGR03252, uncharacterized HhH-GPD family protein	NA|49aa|up_0|NZ_CP040255.1_3967921_3968068_+	NA	NA|438aa|down_0|NZ_CP040255.1_3970123_3971437_+	PRK13375, pimE, mannosyltransferase; Provisional	NA|95aa|down_1|NZ_CP040255.1_3971529_3971814_-	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|258aa|down_2|NZ_CP040255.1_3971944_3972718_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|131aa|down_3|NZ_CP040255.1_3972887_3973280_+	cd03425, MutT_pyrophosphohydrolase, The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi)	NA|1231aa|down_4|NZ_CP040255.1_3973698_3977391_+	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|539aa|down_5|NZ_CP040255.1_3977392_3979009_+	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|228aa|down_6|NZ_CP040255.1_3979005_3979689_+	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|244aa|down_7|NZ_CP040255.1_3979681_3980413_+	pfam02665, Nitrate_red_gam, Nitrate reductase gamma subunit	NA|633aa|down_8|NZ_CP040255.1_3980575_3982474_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|648aa|down_9|NZ_CP040255.1_3982481_3984425_+	cd08501, PBP2_Lpqw, The substrate-binding domain of mycobacterial lipoprotein Lpqw contains type 2 periplasmic binding fold
GCF_005518055.1_ASM551805v1	NZ_CP040255	Mycobacterium avium subsp. hominissuis strain 101115 chromosome, complete genome	3	4299201-4299279	3	CRISPRCasFinder	no		WYL,cas4,DEDDh,csa3,DinG,cas3,RT	Orphan	ATCAATTGCGCCACTCCTTTTCATCGC	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas4,DEDDh,csa3,DinG,cas3,RT	NA|133aa|up_1|NZ_CP040255.1_4297102_4297501_-,NA|213aa|down_5|NZ_CP040255.1_4306417_4307056_+	NA|416aa|up_9|NZ_CP040255.1_4288072_4289320_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|262aa|up_8|NZ_CP040255.1_4289316_4290102_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|78aa|up_7|NZ_CP040255.1_4290132_4290366_+	PRK06870, secG, preprotein translocase subunit SecG; Reviewed	NA|306aa|up_6|NZ_CP040255.1_4290383_4291301_-	TIGR03564, F420_MSMEG_4879, F420-dependent oxidoreductase, MSMEG_4879 family	NA|936aa|up_5|NZ_CP040255.1_4291404_4294212_+	PRK00009, PRK00009, phosphoenolpyruvate carboxylase; Reviewed	NA|260aa|up_4|NZ_CP040255.1_4294287_4295067_+	pfam14023, DUF4239, Protein of unknown function (DUF4239)	NA|329aa|up_3|NZ_CP040255.1_4295166_4296153_+	cd19084, AKR_AKR11B1-like, AKR11B1/AKR11B2 subfamily of aldo-keto reductase (AKR)	NA|310aa|up_2|NZ_CP040255.1_4296154_4297084_-	cd11599, HDAC_classII_2, Histone deacetylases and histone-like deacetylases, classII	NA|133aa|up_1|NZ_CP040255.1_4297102_4297501_-	NA	NA|252aa|up_0|NZ_CP040255.1_4297541_4298297_-	pfam01182, Glucosamine_iso, Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase	NA|515aa|down_0|NZ_CP040255.1_4299285_4300830_-	PRK05722, PRK05722, glucose-6-phosphate 1-dehydrogenase; Validated	NA|374aa|down_1|NZ_CP040255.1_4300826_4301948_-	PRK03343, PRK03343, transaldolase; Validated	NA|700aa|down_2|NZ_CP040255.1_4301964_4304064_-	COG0021, TktA, Transketolase [Carbohydrate transport and metabolism]	NA|309aa|down_3|NZ_CP040255.1_4304320_4305247_+	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|325aa|down_4|NZ_CP040255.1_4305423_4306398_-	cd05286, QOR2, Quinone oxidoreductase (QOR)	NA|213aa|down_5|NZ_CP040255.1_4306417_4307056_+	NA	NA|318aa|down_6|NZ_CP040255.1_4307005_4307959_-	COG1612, CtaA, Uncharacterized protein required for cytochrome oxidase assembly [Posttranslational modification, protein turnover, chaperones]	NA|260aa|down_7|NZ_CP040255.1_4308133_4308913_-	TIGR00025, Mtu_efflux, ABC transporter efflux protein, DrrB family	NA|303aa|down_8|NZ_CP040255.1_4308909_4309818_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|568aa|down_9|NZ_CP040255.1_4309841_4311545_-	TIGR03459, crt_membr, carotene biosynthesis associated membrane protein
GCF_005518055.1_ASM551805v1	NZ_CP040255	Mycobacterium avium subsp. hominissuis strain 101115 chromosome, complete genome	4	5124219-5124317	4	CRISPRCasFinder	no		WYL,cas4,DEDDh,csa3,DinG,cas3,RT	Orphan	CCGCTCGGGGTCGGGCCGCAACCG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas4,DEDDh,csa3,DinG,cas3,RT	NA|193aa|up_3|NZ_CP040255.1_5117826_5118405_-,NA	NA|107aa|up_9|NZ_CP040255.1_5113689_5114010_-	pfam00226, DnaJ, DnaJ domain	NA|140aa|up_8|NZ_CP040255.1_5114322_5114742_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|127aa|up_7|NZ_CP040255.1_5114854_5115235_+	cd04766, HTH_HspR, Helix-Turn-Helix DNA binding domain of the HspR transcription regulator	NA|148aa|up_6|NZ_CP040255.1_5115294_5115738_-	pfam00011, HSP20, Hsp20/alpha crystallin family	NA|410aa|up_5|NZ_CP040255.1_5115902_5117132_+	PRK01565, PRK01565, thiamine biosynthesis protein ThiI; Provisional	NA|113aa|up_4|NZ_CP040255.1_5117483_5117822_-	pfam11225, DUF3024, Protein of unknown function (DUF3024)	NA|193aa|up_3|NZ_CP040255.1_5117826_5118405_-	NA	NA|264aa|up_2|NZ_CP040255.1_5118450_5119242_-	pfam01695, IstB_IS21, IstB-like ATP binding protein	NA|529aa|up_1|NZ_CP040255.1_5119238_5120825_-	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|492aa|up_0|NZ_CP040255.1_5121947_5123423_-	PRK06524, PRK06524, biotin carboxylase-like protein; Validated	NA|362aa|down_0|NZ_CP040255.1_5124391_5125477_-	pfam13358, DDE_3, DDE superfamily endonuclease	NA|104aa|down_1|NZ_CP040255.1_5125591_5125903_-	pfam05305, DUF732, Protein of unknown function (DUF732)	NA|134aa|down_2|NZ_CP040255.1_5126053_5126455_-	cd08355, TioX_like, Micromonospora sp	NA|281aa|down_3|NZ_CP040255.1_5126408_5127251_-	pfam12833, HTH_18, Helix-turn-helix domain	NA|146aa|down_4|NZ_CP040255.1_5127474_5127912_+	pfam00553, CBM_2, Cellulose binding domain	NA|218aa|down_5|NZ_CP040255.1_5128847_5129501_+	TIGR03401, Uncharacterized_protein_YFL061W/YNL335W, HD domain protein, cyanamide hydratase family	NA|607aa|down_6|NZ_CP040255.1_5129524_5131345_-	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism]	NA|295aa|down_7|NZ_CP040255.1_5131489_5132374_+	TIGR02427, b-ketoadipate_enol-lactone_hydrolase, 3-oxoadipate enol-lactonase	NA|198aa|down_8|NZ_CP040255.1_5132394_5132988_-	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|273aa|down_9|NZ_CP040255.1_5133095_5133914_+	COG1804, CaiB, Predicted acyl-CoA transferases/carnitine dehydratase [Energy production and conversion]
