The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040367	Bacillus flexus isolate 1-2-1 chromosome, complete genome	3892082	920806	930130	3892082		Bacillus_phage(33.33%)	8	NA	NA
WP_094910682.1|920806_921523_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	42.2	9.7e-48
WP_061784722.1|921522_923301_+	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.1	1.3e-24
WP_025908351.1|923459_924143_+	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A2D0WXW0	Clostridium_phage	37.8	3.3e-13
WP_138116651.1|924178_925753_-	phosphoglycerate dehydrogenase	NA	A0A2H4PQU8	Staphylococcus_phage	28.8	4.2e-27
WP_025908353.1|926415_926991_+	ECF transporter S component	NA	NA	NA	NA	NA
WP_061784720.1|927037_927286_-	ferredoxin	NA	A0A127AYY7	Bacillus_phage	56.0	5.6e-19
WP_138116652.1|927544_928597_+	recombinase RecQ	NA	NA	NA	NA	NA
WP_138116653.1|928612_930130_+	ATP-dependent DNA helicase RecQ	NA	A0A1V0SGM9	Hokovirus	36.1	1.8e-51
>prophage 2
NZ_CP040367	Bacillus flexus isolate 1-2-1 chromosome, complete genome	3892082	1186806	1231370	3892082	portal,integrase,terminase,coat,capsid,tail,protease,tRNA,head	Bacillus_phage(34.62%)	54	1214960:1214975	1216955:1216970
WP_025908606.1|1186806_1188336_+|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	tRNA	NA	NA	NA	NA
WP_061785716.1|1188337_1188769_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025908608.1|1188967_1189513_+|coat	outer spore coat protein CotE	coat	NA	NA	NA	NA
WP_138116703.1|1189649_1192298_+	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	25.1	1.0e-38
WP_138116704.1|1192317_1194219_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.6	1.1e-66
WP_138116705.1|1194457_1194976_+	hypothetical protein	NA	NA	NA	NA	NA
WP_076513904.1|1195418_1196369_+|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_025908613.1|1196403_1196628_+	RNA chaperone Hfq	NA	NA	NA	NA	NA
WP_078989387.1|1196862_1197819_+	stage V sporulation protein K	NA	G3MAX6	Bacillus_virus	40.8	1.2e-53
WP_061785712.1|1197849_1198461_-	trimeric intracellular cation channel family protein	NA	NA	NA	NA	NA
WP_025908616.1|1198711_1199974_+	GTPase HflX	NA	NA	NA	NA	NA
WP_025908617.1|1199989_1201252_+	methionine gamma-lyase family protein	NA	NA	NA	NA	NA
WP_025908618.1|1201444_1201867_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_025908619.1|1201948_1203283_+	type I glutamate--ammonia ligase	NA	NA	NA	NA	NA
WP_025908620.1|1203385_1204576_-|integrase	site-specific integrase	integrase	S6C485	Thermus_phage	39.2	3.6e-63
WP_062686188.1|1204588_1205101_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4JA43	uncultured_Caudovirales_phage	44.5	6.1e-28
WP_138116706.1|1205181_1205775_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138116707.1|1205788_1206415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138116708.1|1206383_1207556_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138117552.1|1207726_1208089_-	helix-turn-helix transcriptional regulator	NA	A0A2I7SDF8	Paenibacillus_phage	37.3	7.9e-14
WP_138116709.1|1208246_1208459_+	helix-turn-helix domain-containing protein	NA	W8CYU0	Bacillus_phage	39.6	1.0e-05
WP_025908625.1|1208673_1208964_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_025908626.1|1209076_1209589_+	helix-turn-helix transcriptional regulator	NA	A0A290FZK9	Caldibacillus_phage	29.7	1.2e-12
WP_138116710.1|1209585_1209843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138116711.1|1210389_1211436_+	DnaD domain protein	NA	D2XR43	Bacillus_phage	47.9	4.3e-60
WP_025908629.1|1211443_1211626_+	Fur-regulated basic protein FbpA	NA	A0A0S2SXY0	Bacillus_phage	65.1	8.0e-07
WP_025908630.1|1211799_1212111_+	hypothetical protein	NA	NA	NA	NA	NA
WP_062686177.1|1212107_1212287_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138116712.1|1212283_1212406_+	DUF1064 domain-containing protein	NA	NA	NA	NA	NA
WP_138116713.1|1212469_1212784_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138116714.1|1212814_1213117_+	hypothetical protein	NA	A0A0S2MVE9	Bacillus_phage	59.0	3.6e-28
WP_138116715.1|1213156_1213387_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138116716.1|1213402_1213615_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025907123.1|1213838_1214048_+	hypothetical protein	NA	NA	NA	NA	NA
1214960:1214975	attL	TTCAGTGTCCTTTTTA	NA	NA	NA	NA
WP_138116717.1|1214997_1215192_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025907117.1|1215210_1215654_+	ArpU family transcriptional regulator	NA	S6AVV9	Thermus_phage	57.4	5.6e-38
WP_025907115.1|1215650_1216193_+|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	62.8	5.4e-59
WP_138116718.1|1216992_1217286_+	HNH endonuclease	NA	R9TNN2	Paenibacillus_phage	67.7	1.8e-32
1216955:1216970	attR	TTCAGTGTCCTTTTTA	NA	NA	NA	NA
WP_025907113.1|1217409_1217772_+	hypothetical protein	NA	A0A1B0YE76	Lactobacillus_phage	55.3	2.4e-26
WP_025907112.1|1217768_1219460_+|terminase	terminase large subunit	terminase	A0A290GJW3	Caldibacillus_phage	71.0	7.7e-245
WP_025907110.1|1219477_1220683_+|portal	phage portal protein	portal	A0A290G4I4	Caldibacillus_phage	60.0	1.4e-139
WP_025907109.1|1220660_1221245_+|head,protease	HK97 family phage prohead protease	head,protease	A0A2I7SBY1	Paenibacillus_phage	48.4	2.2e-37
WP_051567033.1|1221291_1222497_+|capsid	phage major capsid protein	capsid	NA	NA	NA	NA
WP_062954750.1|1222513_1222762_+	hypothetical protein	NA	A6XMJ7	Bacillus_virus	42.9	5.8e-08
WP_100346959.1|1222761_1223040_+	DNA-packaging protein	NA	R9TMB7	Paenibacillus_phage	54.5	1.9e-20
WP_062954752.1|1223026_1223335_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_025907102.1|1223331_1223694_+	HK97 gp10 family phage protein	NA	A0A0S2SXK7	Bacillus_phage	49.6	2.3e-21
WP_025907100.1|1223690_1224029_+	DUF3168 domain-containing protein	NA	A0A0S2SY15	Bacillus_phage	52.3	8.4e-26
WP_138116719.1|1224041_1224626_+|tail	phage tail protein	tail	A0A0S2SXT6	Bacillus_phage	45.0	4.4e-38
WP_025907096.1|1224675_1225044_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138116720.1|1224979_1225186_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138116721.1|1225200_1229085_+	transglycosylase SLT domain-containing protein	NA	A0A0S2SXL7	Bacillus_phage	45.9	4.1e-193
WP_138116722.1|1229091_1229907_+|tail	phage tail family protein	tail	A6M962	Geobacillus_virus	43.6	2.7e-54
WP_138116723.1|1229915_1231370_+	hypothetical protein	NA	Q9T1A5	Listeria_phage	30.8	6.6e-27
>prophage 3
NZ_CP040367	Bacillus flexus isolate 1-2-1 chromosome, complete genome	3892082	1236519	1242724	3892082		Bacillus_phage(83.33%)	9	NA	NA
WP_138116729.1|1236519_1236759_+	hypothetical protein	NA	A0A0S2SXN3	Bacillus_phage	86.1	7.2e-32
WP_138116730.1|1236814_1237846_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0S2SXM5	Bacillus_phage	78.6	4.4e-158
WP_062954768.1|1238072_1238705_+	hypothetical protein	NA	NA	NA	NA	NA
WP_082823086.1|1238848_1239511_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_062954770.1|1239565_1240237_-	hypothetical protein	NA	A0A0Y0AUX7	Bacillus_phage	34.0	2.0e-26
WP_025907069.1|1240233_1240440_-	helix-turn-helix transcriptional regulator	NA	A0A0S2SXU5	Bacillus_phage	45.2	3.1e-07
WP_062686132.1|1240771_1240978_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138116731.1|1240977_1242144_+	cell division protein FtsK	NA	A0A0S2GLG9	Bacillus_phage	38.4	5.4e-64
WP_138116732.1|1242031_1242724_+	hypothetical protein	NA	Q0H249	Geobacillus_phage	37.9	2.8e-20
>prophage 4
NZ_CP040367	Bacillus flexus isolate 1-2-1 chromosome, complete genome	3892082	3660870	3669126	3892082		Synechococcus_phage(50.0%)	8	NA	NA
WP_025909070.1|3660870_3661449_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.1	1.5e-30
WP_025909071.1|3661445_3662483_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A0E3F0L1	Synechococcus_phage	44.7	1.7e-69
WP_025909072.1|3662509_3663922_-	amidophosphoribosyltransferase	NA	A0A1B1ISH6	uncultured_Mediterranean_phage	31.7	8.9e-53
WP_025909073.1|3663906_3666129_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	42.8	6.3e-162
WP_076513836.1|3666112_3666796_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_138117462.1|3666792_3667044_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_025909076.1|3667051_3667759_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	A0A0E3FGF0	Synechococcus_phage	39.5	5.1e-41
WP_025909077.1|3667833_3669126_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	25.5	3.4e-19
>prophage 1
NZ_CP040366	Bacillus flexus isolate 1-2-1 plasmid punnamed3, complete sequence	93879	43362	78998	93879	integrase,transposase,tRNA	Synechococcus_phage(25.0%)	28	37318:37334	86769:86785
37318:37334	attL	AGGAGCTTTCAATGAAT	NA	NA	NA	NA
WP_138116238.1|43362_44358_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_138116240.1|45001_46117_-|transposase	IS4 family transposase	transposase	NA	NA	NA	NA
WP_138116242.1|46764_47913_-	glutathione-dependent formaldehyde dehydrogenase	NA	E3SJ82	Synechococcus_phage	27.4	1.7e-09
WP_138116244.1|48777_49335_-	6-phospho-3-hexuloisomerase	NA	NA	NA	NA	NA
WP_138116246.1|49342_49975_-	3-hexulose-6-phosphate synthase	NA	NA	NA	NA	NA
WP_138116248.1|50207_50552_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_138116250.1|51150_52605_+	glucose-6-phosphate dehydrogenase	NA	M4SP85	Cyanophage	35.1	3.0e-72
WP_138116252.1|52672_53566_+	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	36.5	5.8e-58
WP_138116254.1|53624_54971_+	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_138116256.1|55053_56220_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_138116258.1|56482_57172_-|transposase	IS3 family transposase	transposase	A0A0N9SIX5	Staphylococcus_phage	62.9	5.5e-16
WP_098366728.1|57141_57462_-|transposase	transposase	transposase	A0A0N7GFG6	Staphylococcus_phage	56.9	7.9e-26
WP_138116260.1|57723_58365_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138116262.1|58846_59083_+	DUF3850 domain-containing protein	NA	A0A059T699	Listeria_phage	55.1	1.4e-16
WP_138116264.1|59394_59856_-	3-hexulose-6-phosphate synthase	NA	NA	NA	NA	NA
WP_138116266.1|60086_60629_-	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	30.9	1.5e-13
WP_138116268.1|60809_62273_+	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	56.2	3.6e-142
WP_138116270.1|62293_62713_+	universal stress protein	NA	NA	NA	NA	NA
WP_138116272.1|62830_64495_+	ribonuclease J	NA	NA	NA	NA	NA
WP_138116274.1|64788_65334_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	41.5	8.2e-31
WP_138116276.1|65376_68325_+|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	26.3	8.0e-80
WP_138116252.1|70090_70984_+	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	36.5	5.8e-58
WP_138116278.1|71153_71648_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138116280.1|72697_73207_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_138116282.1|74102_75251_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_138116284.1|75730_76702_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_138116286.1|76941_77616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138116288.1|77759_78998_+|transposase	IS21 family transposase	transposase	U5N3F9	Enterobacteria_phage	34.1	1.2e-53
86769:86785	attR	ATTCATTGAAAGCTCCT	NA	NA	NA	NA
