assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005671355.1_ASM567135v1	NZ_CP040397	Escherichia coli strain BA22372 chromosome, complete genome	1	1190-1329	1	CRISPRCasFinder	no		PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	Orphan	TGCCTGATGCGACGCTTGCCGCGTCTTATCAGGCCTACAACGACACAAA	49	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	NA,NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|197aa|up_1|NZ_CP040397.1_0_591_+	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|192aa|up_0|NZ_CP040397.1_600_1176_+	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|347aa|down_0|NZ_CP040397.1_1380_2421_-	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|212aa|down_1|NZ_CP040397.1_2493_3129_-	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|173aa|down_2|NZ_CP040397.1_3256_3775_+	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|148aa|down_3|NZ_CP040397.1_3754_4198_-	PRK03467, PRK03467, hypothetical protein; Provisional	NA|101aa|down_4|NZ_CP040397.1_4248_4551_+	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|168aa|down_5|NZ_CP040397.1_4537_5041_-	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|175aa|down_6|NZ_CP040397.1_5034_5559_-	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|332aa|down_7|NZ_CP040397.1_5767_6763_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|293aa|down_8|NZ_CP040397.1_6771_7650_+	PRK15447, PRK15447, putative protease; Provisional	NA|336aa|down_9|NZ_CP040397.1_7855_8863_+	PRK10508, PRK10508, luciferase-like monooxygenase
GCF_005671355.1_ASM567135v1	NZ_CP040397	Escherichia coli strain BA22372 chromosome, complete genome	2	1671988-1672141	2	CRISPRCasFinder	no		PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	Orphan	CGCGTCTTATCATGCCTACAAACCTGTGCCGGATCGGTAGGCCGGATAAGGCG	53	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	NA|150aa|up_8|NZ_CP040397.1_1661960_1662410_+,NA	NA|1020aa|up_9|NZ_CP040397.1_1658889_1661949_+	COG3209, RhsA, Rhs family protein [Cell envelope biogenesis, outer membrane]	NA|150aa|up_8|NZ_CP040397.1_1661960_1662410_+	NA	NA|257aa|up_7|NZ_CP040397.1_1663848_1664619_-	PRK10438, PRK10438, C-N hydrolase family amidase; Provisional	NA|158aa|up_6|NZ_CP040397.1_1664772_1665246_+	PRK09993, PRK09993, C-lysozyme inhibitor; Provisional	NA|815aa|up_5|NZ_CP040397.1_1665288_1667733_-	PRK09463, fadE, acyl-CoA dehydrogenase; Reviewed	NA|193aa|up_4|NZ_CP040397.1_1667972_1668551_+	PRK00414, gmhA, D-sedoheptulose 7-phosphate isomerase	NA|256aa|up_3|NZ_CP040397.1_1668756_1669524_+	pfam13230, GATase_4, Glutamine amidotransferases class-II	NA|247aa|up_2|NZ_CP040397.1_1669494_1670235_-	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|253aa|up_1|NZ_CP040397.1_1670526_1671285_+	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane]	NA|166aa|up_0|NZ_CP040397.1_1671460_1671958_+	COG1943, COG1943, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|580aa|down_0|NZ_CP040397.1_1672275_1674015_-	COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|257aa|down_1|NZ_CP040397.1_1673974_1674745_+	PRK06778, PRK06778, hypothetical protein; Validated	NA|352aa|down_2|NZ_CP040397.1_1674815_1675871_+	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|151aa|down_3|NZ_CP040397.1_1675867_1676320_+	PRK09831, PRK09831, GNAT family N-acetyltransferase	NA|89aa|down_4|NZ_CP040397.1_1676626_1676893_+	PRK09588, PRK09588, hypothetical protein; Reviewed	NA|486aa|down_5|NZ_CP040397.1_1677249_1678707_-	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional	NA|153aa|down_6|NZ_CP040397.1_1678967_1679426_+	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated	NA|415aa|down_7|NZ_CP040397.1_1679517_1680762_+	PRK05077, frsA, esterase FrsA	NA|134aa|down_8|NZ_CP040397.1_1680819_1681221_+	PRK10984, PRK10984, sigma factor-binding protein Crl	NA|352aa|down_9|NZ_CP040397.1_1681259_1682315_-	PRK10159, PRK10159, phosphoporin PhoE
GCF_005671355.1_ASM567135v1	NZ_CP040397	Escherichia coli strain BA22372 chromosome, complete genome	3	3782039-3782165	3	CRISPRCasFinder	no		PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	Orphan	TTTGTAGGCCTGATAAGACGCGCCAGCGTCGCATCAGGC	39	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	NA,NA|105aa|down_3|NZ_CP040397.1_3786729_3787044_+	NA|395aa|up_9|NZ_CP040397.1_3760946_3762131_+	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|259aa|up_8|NZ_CP040397.1_3762204_3762981_-	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|up_7|NZ_CP040397.1_3762985_3764635_-	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|1465aa|up_6|NZ_CP040397.1_3764635_3769030_-	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|208aa|up_5|NZ_CP040397.1_3769173_3769797_-	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|563aa|up_4|NZ_CP040397.1_3769793_3771482_-	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|876aa|up_3|NZ_CP040397.1_3771630_3774258_-	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|241aa|up_2|NZ_CP040397.1_3774404_3775127_+	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|1251aa|up_1|NZ_CP040397.1_3775254_3779007_-	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|762aa|up_0|NZ_CP040397.1_3779702_3781988_+	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|377aa|down_0|NZ_CP040397.1_3782221_3783352_+	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|85aa|down_1|NZ_CP040397.1_3783351_3783606_+	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|217aa|down_2|NZ_CP040397.1_3783659_3784310_-	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|105aa|down_3|NZ_CP040397.1_3786729_3787044_+	NA	NA|359aa|down_4|NZ_CP040397.1_3787262_3788339_-	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|453aa|down_5|NZ_CP040397.1_3788343_3789702_-	PRK11273, glpT, glycerol-3-phosphate transporter	NA|543aa|down_6|NZ_CP040397.1_3789974_3791603_+	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|420aa|down_7|NZ_CP040397.1_3791592_3792852_+	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_8|NZ_CP040397.1_3792848_3794039_+	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|300aa|down_9|NZ_CP040397.1_3794231_3795131_+	PRK09956, PRK09956, ISNCY family transposase
GCF_005671355.1_ASM567135v1	NZ_CP040397	Escherichia coli strain BA22372 chromosome, complete genome	4	4320366-4320942	1,4,1,2	PILER-CR,CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas6e,cas5	PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	Unclear	CCGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA,CGGTTTATCCCCGCTGGCGCGGGGAACAC,CGGTTTATCCCCGCTGGCGCGGGGAACACA	30,30,29,30	0	0	NA	NA	I-E:I-E:I-E:I-E	6,9,9,6	9	Unclear	PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	NA,NA	NA|254aa|up_9|NZ_CP040397.1_4312179_4312941_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP040397.1_4312921_4313971_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP040397.1_4313967_4314447_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP040397.1_4314446_4315157_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP040397.1_4315175_4315487_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP040397.1_4315680_4316004_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP040397.1_4316053_4316659_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP040397.1_4316658_4318086_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP040397.1_4318087_4318996_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP040397.1_4319247_4320285_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP040397.1_4321037_4321331_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|308aa|down_1|NZ_CP040397.1_4321327_4322251_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas6e|217aa|down_2|NZ_CP040397.1_4322247_4322898_-	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas5|249aa|down_3|NZ_CP040397.1_4322879_4323626_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	NA|51aa|down_4|NZ_CP040397.1_4326476_4326629_-	pfam01848, HOK_GEF, Hok/gef family	NA|245aa|down_5|NZ_CP040397.1_4326893_4327628_-	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|571aa|down_6|NZ_CP040397.1_4327701_4329414_-	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|600aa|down_7|NZ_CP040397.1_4329413_4331213_-	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|122aa|down_8|NZ_CP040397.1_4331528_4331894_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|down_9|NZ_CP040397.1_4331971_4333243_+	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_005671355.1_ASM567135v1	NZ_CP040397	Escherichia coli strain BA22372 chromosome, complete genome	5	4343326-4343841	5,2,3	CRISPRCasFinder,CRT,PILER-CR	no		PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	Orphan	CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC,CGGTTTATCCCCGCTGGCGCGGGGAACTC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	PD-DExK,csa3,RT,cas3,DEDDh,DinG,c2c9_V-U4,cas2,cas1,cas6e,cas5	NA,NA|47aa|down_1|NZ_CP040397.1_4344990_4345131_+	NA|122aa|up_9|NZ_CP040397.1_4331528_4331894_+	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|424aa|up_8|NZ_CP040397.1_4331971_4333243_+	PRK10015, PRK10015, oxidoreductase; Provisional	NA|87aa|up_7|NZ_CP040397.1_4333233_4333494_+	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|192aa|up_6|NZ_CP040397.1_4333510_4334086_+	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|287aa|up_5|NZ_CP040397.1_4334233_4335094_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|260aa|up_4|NZ_CP040397.1_4335090_4335870_-	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|485aa|up_3|NZ_CP040397.1_4337277_4338732_-	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|262aa|up_2|NZ_CP040397.1_4338801_4339587_-	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|426aa|up_1|NZ_CP040397.1_4339905_4341183_+	cd06174, MFS, Major Facilitator Superfamily	NA|493aa|up_0|NZ_CP040397.1_4341209_4342688_+	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|224aa|down_0|NZ_CP040397.1_4344180_4344852_-	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|47aa|down_1|NZ_CP040397.1_4344990_4345131_+	NA	NA|291aa|down_2|NZ_CP040397.1_4345144_4346017_+	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|433aa|down_3|NZ_CP040397.1_4346076_4347375_-	PRK00077, eno, enolase; Provisional	NA|546aa|down_4|NZ_CP040397.1_4347462_4349100_-	PRK05380, pyrG, CTP synthetase; Validated	NA|264aa|down_5|NZ_CP040397.1_4349327_4350119_-	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|112aa|down_6|NZ_CP040397.1_4350189_4350525_-	PRK09907, PRK09907, endoribonuclease MazF	NA|83aa|down_7|NZ_CP040397.1_4350524_4350773_-	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|745aa|down_8|NZ_CP040397.1_4350850_4353085_-	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|434aa|down_9|NZ_CP040397.1_4353132_4354434_-	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
