assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005706855.1_ASM570685v1	NZ_CP038850	Staphylococcus aureus strain Lr2 chromosome, complete genome	1	632775-632862	1	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	AAAAGAAATTCTACAGGCAATGCAAGTTGG	30	1	1	632805-632832	NZ_CP038850.1_1941189-1941162	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|34aa|up_5|NZ_CP038850.1_627201_627303_+,NA|36aa|down_5|NZ_CP038850.1_637771_637879_+	NA|359aa|up_9|NZ_CP038850.1_623748_624825_+	TIGR01220, phosphomevalonate_kinase, phosphomevalonate kinase, ERG8-type, Gram-positive branch	NA|114aa|up_8|NZ_CP038850.1_625001_625343_+	pfam07293, DUF1450, Protein of unknown function (DUF1450)	NA|441aa|up_7|NZ_CP038850.1_625394_626717_-	PRK07251, PRK07251, FAD-containing oxidoreductase	NA|147aa|up_6|NZ_CP038850.1_626703_627144_-	COG1959, COG1959, Predicted transcriptional regulator [Transcription]	NA|34aa|up_5|NZ_CP038850.1_627201_627303_+	NA	NA|465aa|up_4|NZ_CP038850.1_627767_629162_+	pfam04740, LXG, LXG domain of WXG superfamily	NA|212aa|up_3|NZ_CP038850.1_629162_629798_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|207aa|up_2|NZ_CP038850.1_629844_630465_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|211aa|up_1|NZ_CP038850.1_630604_631237_+	pfam04276, DUF443, Protein of unknown function (DUF443)	NA|313aa|up_0|NZ_CP038850.1_631684_632623_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|down_0|NZ_CP038850.1_633120_633657_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|down_1|NZ_CP038850.1_633825_634302_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|down_2|NZ_CP038850.1_634341_635637_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|down_3|NZ_CP038850.1_635664_636186_+	pfam08741, YwhD, YwhD family	NA|337aa|down_4|NZ_CP038850.1_636684_637695_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|down_5|NZ_CP038850.1_637771_637879_+	NA	NA|128aa|down_6|NZ_CP038850.1_638004_638388_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|down_7|NZ_CP038850.1_638384_640046_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|down_8|NZ_CP038850.1_640379_641015_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_9|NZ_CP038850.1_641447_642275_+	cd01143, YvrC, Periplasmic binding protein YvrC
GCF_005706855.1_ASM570685v1	NZ_CP038850	Staphylococcus aureus strain Lr2 chromosome, complete genome	2	930588-930672	2	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	TTTTCGAAATTCTCTGTGTTTGGGCCC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA,NA	NA|192aa|up_9|NZ_CP038850.1_916959_917535_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|up_8|NZ_CP038850.1_917539_918064_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_7|NZ_CP038850.1_918079_918655_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|up_6|NZ_CP038850.1_918814_922291_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|up_5|NZ_CP038850.1_922291_925945_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|up_4|NZ_CP038850.1_926108_927011_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|130aa|up_3|NZ_CP038850.1_927335_927725_+	PRK13673, PRK13673, hypothetical protein; Provisional	NA|439aa|up_2|NZ_CP038850.1_927895_929212_-	PRK13512, PRK13512, coenzyme A disulfide reductase; Provisional	NA|275aa|up_1|NZ_CP038850.1_929263_930088_-	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_0|NZ_CP038850.1_930201_930510_+	COG2151, PaaD, Predicted metal-sulfur cluster biosynthetic enzyme [General function prediction only]	NA|605aa|down_0|NZ_CP038850.1_931164_932979_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|870aa|down_1|NZ_CP038850.1_933182_935792_+	TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB	NA|290aa|down_2|NZ_CP038850.1_935850_936720_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|382aa|down_3|NZ_CP038850.1_936829_937975_+	COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]	NA|214aa|down_4|NZ_CP038850.1_937958_938600_+	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|374aa|down_5|NZ_CP038850.1_938592_939714_+	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters	NA|172aa|down_6|NZ_CP038850.1_939691_940207_+	COG1881, COG1881, Phospholipid-binding protein [General function prediction only]	NA|145aa|down_7|NZ_CP038850.1_940517_940952_+	pfam03642, MAP, MAP domain	NA|62aa|down_8|NZ_CP038850.1_941208_941394_-	pfam11151, DUF2929, Protein of unknown function (DUF2929)	NA|314aa|down_9|NZ_CP038850.1_941688_942630_+	PRK09352, PRK09352, beta-ketoacyl-ACP synthase 3
GCF_005706855.1_ASM570685v1	NZ_CP038850	Staphylococcus aureus strain Lr2 chromosome, complete genome	3	1941071-1941160	3	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,RT,DinG,csa3,WYL	Unclear	CCCCAACTTGCATTGCCTGTAGAATTTCTTTT	32	1	3	1941103-1941128|1941103-1941128|1941103-1941128	NZ_CP038850.1_802802-802827|NZ_CP038850.1_1942563-1942588|NZ_CP038850.1_2276727-2276752	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP038850.1_1935317_1935593_+,NA|129aa|up_1|NZ_CP038850.1_1939575_1939962_-,NA|138aa|down_1|NZ_CP038850.1_1942882_1943296_-,NA|37aa|down_2|NZ_CP038850.1_1943324_1943435_-,NA|31aa|down_6|NZ_CP038850.1_1946440_1946533_-	NA|419aa|up_9|NZ_CP038850.1_1933240_1934497_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP038850.1_1934499_1934700_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP038850.1_1934846_1935311_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP038850.1_1935317_1935593_+	NA	NA|406aa|up_5|NZ_CP038850.1_1935870_1937088_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP038850.1_1937200_1937830_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP038850.1_1937819_1938863_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP038850.1_1938859_1939561_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP038850.1_1939575_1939962_-	NA	NA|253aa|up_0|NZ_CP038850.1_1940178_1940937_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP038850.1_1941465_1942452_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP038850.1_1942882_1943296_-	NA	NA|37aa|down_2|NZ_CP038850.1_1943324_1943435_-	NA	NA|244aa|down_3|NZ_CP038850.1_1943520_1944252_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP038850.1_1944253_1945567_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP038850.1_1945858_1946359_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP038850.1_1946440_1946533_-	NA	DEDDh|185aa|down_7|NZ_CP038850.1_1946748_1947303_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP038850.1_1947370_1948441_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP038850.1_1948687_1949218_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_005706855.1_ASM570685v1	NZ_CP038850	Staphylococcus aureus strain Lr2 chromosome, complete genome	4	2173359-2173461	4	CRISPRCasFinder	no	csa3	cas3,DEDDh,RT,DinG,csa3,WYL	Type I-A	AGCATCCAACTGTATTCCTCTATTTTTCAACTTTAGT	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP038850.1_2168191_2168422_-,NA|364aa|up_0|NZ_CP038850.1_2172211_2173303_+,NA|35aa|down_0|NZ_CP038850.1_2173817_2173922_-,NA|53aa|down_1|NZ_CP038850.1_2174598_2174757_+,NA|31aa|down_2|NZ_CP038850.1_2175203_2175296_+	NA|237aa|up_9|NZ_CP038850.1_2163800_2164511_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP038850.1_2164632_2165076_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP038850.1_2165275_2165689_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP038850.1_2166144_2167518_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP038850.1_2168191_2168422_-	NA	NA|313aa|up_4|NZ_CP038850.1_2168452_2169391_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP038850.1_2169826_2170492_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP038850.1_2170643_2170964_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP038850.1_2170965_2171946_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP038850.1_2172211_2173303_+	NA	NA|35aa|down_0|NZ_CP038850.1_2173817_2173922_-	NA	NA|53aa|down_1|NZ_CP038850.1_2174598_2174757_+	NA	NA|31aa|down_2|NZ_CP038850.1_2175203_2175296_+	NA	NA|286aa|down_3|NZ_CP038850.1_2175416_2176274_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP038850.1_2176341_2177124_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP038850.1_2177355_2179161_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP038850.1_2179841_2181380_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP038850.1_2181414_2183547_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP038850.1_2183558_2183993_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP038850.1_2183992_2185099_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_005706855.1_ASM570685v1	NZ_CP038850	Staphylococcus aureus strain Lr2 chromosome, complete genome	5	2250405-2250529	5	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	CCTCTTTACTCGAAAGCTCACAAAACCCTTGATATCA	37	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|93aa|up_8|NZ_CP038850.1_2242476_2242755_+,NA|123aa|up_7|NZ_CP038850.1_2242764_2243133_+,NA|61aa|up_1|NZ_CP038850.1_2249327_2249510_-,NA	NA|285aa|up_9|NZ_CP038850.1_2240749_2241604_-	COG0739, NlpD, Membrane proteins related to metalloendopeptidases [Cell envelope biogenesis, outer membrane]	NA|93aa|up_8|NZ_CP038850.1_2242476_2242755_+	NA	NA|123aa|up_7|NZ_CP038850.1_2242764_2243133_+	NA	NA|383aa|up_6|NZ_CP038850.1_2243132_2244281_+	cd04949, GT4_GtfA-like, accessory Sec system glycosyltransferase GtfA and similar proteins	NA|272aa|up_5|NZ_CP038850.1_2244513_2245329_-	cd02605, HAD_SPP, sucrose-phosphatase, similar to Synechocystis sp PCC 6803 SPP	NA|142aa|up_4|NZ_CP038850.1_2245623_2246049_+	pfam03642, MAP, MAP domain	NA|235aa|up_3|NZ_CP038850.1_2246427_2247132_-	COG3527, AlsD, Alpha-acetolactate decarboxylase [Secondary metabolites biosynthesis, transport, and catabolism]	NA|555aa|up_2|NZ_CP038850.1_2247168_2248833_-	PRK08617, PRK08617, acetolactate synthase AlsS	NA|61aa|up_1|NZ_CP038850.1_2249327_2249510_-	NA	NA|60aa|up_0|NZ_CP038850.1_2250159_2250339_-	PRK09775, PRK09775, type II toxin-antitoxin system HipA family toxin YjjJ	NA|133aa|down_0|NZ_CP038850.1_2250927_2251326_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|146aa|down_1|NZ_CP038850.1_2251339_2251777_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|268aa|down_2|NZ_CP038850.1_2252016_2252820_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|269aa|down_3|NZ_CP038850.1_2252824_2253631_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|287aa|down_4|NZ_CP038850.1_2253620_2254481_-	PRK13646, cbiO, energy-coupling factor transporter ATPase	NA|270aa|down_5|NZ_CP038850.1_2254477_2255287_-	PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional	NA|123aa|down_6|NZ_CP038850.1_2255824_2256193_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|315aa|down_7|NZ_CP038850.1_2256209_2257154_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|130aa|down_8|NZ_CP038850.1_2257228_2257618_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|122aa|down_9|NZ_CP038850.1_2257641_2258007_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated
GCF_005706855.1_ASM570685v1	NZ_CP038850	Staphylococcus aureus strain Lr2 chromosome, complete genome	6	2617234-2617315	6	CRISPRCasFinder	no		cas3,DEDDh,RT,DinG,csa3,WYL	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	1	2617258-2617291	NZ_CP038850.1_1027883-1027850	NA	1	1	Orphan	cas3,DEDDh,RT,DinG,csa3,WYL	NA|163aa|up_9|NZ_CP038850.1_2607643_2608132_-,NA|43aa|up_3|NZ_CP038850.1_2615015_2615144_-,NA|167aa|up_1|NZ_CP038850.1_2616065_2616566_+,NA	NA|163aa|up_9|NZ_CP038850.1_2607643_2608132_-	NA	NA|256aa|up_8|NZ_CP038850.1_2608306_2609074_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|604aa|up_7|NZ_CP038850.1_2609434_2611246_-	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|163aa|up_6|NZ_CP038850.1_2611760_2612249_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|234aa|up_5|NZ_CP038850.1_2612524_2613226_-	cd13925, RPF, core lysozyme-like domain of resuscitation-promoting factor proteins	NA|352aa|up_4|NZ_CP038850.1_2613833_2614889_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|43aa|up_3|NZ_CP038850.1_2615015_2615144_-	NA	NA|196aa|up_2|NZ_CP038850.1_2615280_2615868_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|167aa|up_1|NZ_CP038850.1_2616065_2616566_+	NA	NA|77aa|up_0|NZ_CP038850.1_2616785_2617016_+	COG4224, COG4224, Uncharacterized protein conserved in bacteria [Function unknown]	NA|126aa|down_0|NZ_CP038850.1_2617419_2617797_-	COG3607, COG3607, Predicted lactoylglutathione lyase [General function prediction only]	NA|274aa|down_1|NZ_CP038850.1_2617813_2618635_-	cd05251, NmrA_like_SDR_a, NmrA (a transcriptional regulator) and HSCARG (an NADPH sensor) like proteins, atypical (a) SDRs	NA|100aa|down_2|NZ_CP038850.1_2618653_2618953_-	COG4367, COG4367, Uncharacterized protein conserved in bacteria [Function unknown]	NA|186aa|down_3|NZ_CP038850.1_2619083_2619641_+	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|235aa|down_4|NZ_CP038850.1_2619633_2620338_+	cd05324, carb_red_PTCR-like_SDR_c, Porcine testicular carbonyl reductase (PTCR)-like, classical (c) SDRs	NA|337aa|down_5|NZ_CP038850.1_2620435_2621446_+	COG2159, COG2159, Predicted metal-dependent hydrolase of the TIM-barrel fold [General function prediction only]	NA|277aa|down_6|NZ_CP038850.1_2621465_2622296_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|342aa|down_7|NZ_CP038850.1_2622436_2623462_+	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|297aa|down_8|NZ_CP038850.1_2623682_2624573_-	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only]	NA|447aa|down_9|NZ_CP038850.1_2624672_2626013_-	COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]
