The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040461	Enterococcus sp. M190262 chromosome, complete genome	3339183	1323371	1332900	3339183	tRNA	Only_Syngen_Nebraska_virus(33.33%)	7	NA	NA
WP_005472769.1|1323371_1324418_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.9	3.3e-20
WP_003128581.1|1324432_1325368_+	ABC transporter ATP-binding protein	NA	A0A1J0FA64	Only_Syngen_Nebraska_virus	23.5	2.7e-05
WP_081131391.1|1325384_1326422_+	helix-turn-helix domain-containing protein	NA	A0A288TXV8	Enterococcus_phage	45.1	1.7e-61
WP_060813097.1|1326620_1327451_-	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	31.7	2.7e-25
WP_003128585.1|1327496_1327787_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003128586.1|1327950_1329957_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	37.7	1.9e-96
WP_138371473.1|1330221_1332900_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	28.2	1.4e-70
>prophage 2
NZ_CP040461	Enterococcus sp. M190262 chromosome, complete genome	3339183	1879976	1897258	3339183		Streptococcus_phage(92.31%)	18	NA	NA
WP_103300911.1|1879976_1880291_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	54.4	2.7e-26
WP_029487158.1|1880303_1880678_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	67.0	1.1e-34
WP_103300910.1|1880678_1881032_+	damage-inducible protein J	NA	NA	NA	NA	NA
WP_103300909.1|1881100_1882468_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	63.2	3.3e-161
WP_138371660.1|1882513_1883656_+	DNA cytosine methyltransferase	NA	A0A1S5SEK0	Streptococcus_phage	64.7	5.6e-130
WP_103300908.1|1883681_1883936_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103300907.1|1884192_1885377_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	62.1	3.5e-143
WP_103300906.1|1885373_1885511_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002298822.1|1885515_1885737_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	4.5e-28
WP_103300905.1|1885749_1886253_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	62.2	2.9e-54
WP_103300904.1|1886353_1887418_+	nucleoid-associated protein	NA	NA	NA	NA	NA
WP_103300903.1|1887436_1888918_+	hypothetical protein	NA	NA	NA	NA	NA
WP_103300902.1|1888977_1889367_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	67.5	2.5e-42
WP_138371661.1|1889353_1891801_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	75.6	0.0e+00
WP_103300900.1|1891805_1893929_+	FUSC family protein	NA	A0A1S5SF30	Streptococcus_phage	59.8	7.3e-184
WP_138371662.1|1893925_1894930_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	63.2	9.6e-118
WP_103300898.1|1894948_1895860_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	42.7	7.5e-61
WP_138371663.1|1896280_1897258_+	choloylglycine hydrolase family protein	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.3	4.2e-25
>prophage 3
NZ_CP040461	Enterococcus sp. M190262 chromosome, complete genome	3339183	2709860	2718749	3339183		Lactobacillus_phage(42.86%)	8	NA	NA
WP_003126538.1|2709860_2712284_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	66.7	0.0e+00
WP_138371906.1|2712302_2712908_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	67.2	3.7e-72
WP_138371907.1|2713207_2714122_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	45.1	8.0e-71
WP_113849678.1|2714363_2715314_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_003126533.1|2715428_2715890_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	54.0	2.9e-37
WP_005471510.1|2715909_2717088_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	50.4	5.6e-101
WP_021149731.1|2717080_2717701_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	39.4	6.5e-32
WP_138371908.1|2717669_2718749_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	35.3	2.2e-35
>prophage 4
NZ_CP040461	Enterococcus sp. M190262 chromosome, complete genome	3339183	2758707	2795307	3339183	holin,terminase,portal,capsid,tail,integrase	Bacillus_phage(30.0%)	52	2765877:2765892	2797728:2797743
WP_138371934.1|2758707_2759154_-|holin	phage holin family protein	holin	A0A097BY69	Enterococcus_phage	72.1	1.6e-45
WP_138371935.1|2759185_2759392_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371936.1|2759391_2760285_-	hypothetical protein	NA	A0A2H4J3N3	uncultured_Caudovirales_phage	45.9	4.5e-10
WP_138371937.1|2760250_2761390_-	hypothetical protein	NA	A0A2H4J3N3	uncultured_Caudovirales_phage	47.8	4.3e-90
WP_138371938.1|2761373_2762369_-	acyltransferase family protein	NA	NA	NA	NA	NA
WP_138371939.1|2762423_2764793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371940.1|2764856_2765114_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138371941.1|2765163_2765982_-	hypothetical protein	NA	NA	NA	NA	NA
2765877:2765892	attL	TACGATGGGTGATCTT	NA	NA	NA	NA
WP_138371942.1|2765983_2769436_-	tape measure protein	NA	Q938K3	Temperate_phage	55.5	2.9e-89
WP_138371943.1|2769428_2769998_-	hypothetical protein	NA	Q5YA62	Bacillus_phage	45.6	4.2e-38
WP_138371944.1|2770007_2770451_-	hypothetical protein	NA	Q5YA63	Bacillus_phage	30.3	6.7e-15
WP_138371945.1|2770496_2770811_-	fibronectin type III domain-containing protein	NA	D2J067	Enterococcus_phage	49.0	1.2e-21
WP_138371946.1|2770836_2771295_-|tail	phage tail protein	tail	Q5YA64	Bacillus_phage	42.1	3.4e-22
WP_113849974.1|2771294_2771702_-|capsid	capsid protein	capsid	Q5YA65	Bacillus_phage	56.6	2.0e-37
WP_138371947.1|2771701_2772034_-|capsid	capsid protein	capsid	Q5YA66	Bacillus_phage	48.1	1.5e-22
WP_138371948.1|2772033_2772372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371949.1|2772371_2772761_-	hypothetical protein	NA	Q5YA68	Bacillus_phage	43.4	6.1e-20
WP_138371950.1|2772790_2773036_-	Ig domain-containing protein	NA	A5GYM0	Lactococcus_phage	69.7	8.8e-17
WP_138371951.1|2773047_2773908_-|capsid	capsid protein	capsid	U3PDP8	Lactobacillus_phage	63.8	5.0e-99
WP_138371952.1|2773910_2774477_-|capsid	capsid protein	capsid	K4K7P1	Streptococcus_phage	40.2	5.0e-07
WP_138371953.1|2774599_2775748_-|capsid	phage capsid protein	capsid	Q5YA73	Bacillus_phage	33.9	1.2e-52
WP_138371954.1|2775752_2777291_-|portal	phage portal protein	portal	Q5YA75	Bacillus_phage	46.2	1.1e-107
WP_138371955.1|2777278_2778601_-|terminase	PBSX family phage terminase large subunit	terminase	I1TLD6	Bacillus_phage	57.7	1.3e-141
WP_138371956.1|2778548_2779091_-|terminase	terminase small subunit	terminase	A0A0B5CU16	Listeria_phage	55.0	1.3e-36
WP_138371957.1|2779194_2779983_-	hypothetical protein	NA	NA	NA	NA	NA
WP_040013712.1|2780417_2780831_-	autolysin	NA	D2IYV6	Enterococcus_phage	64.0	1.9e-43
WP_138371958.1|2781022_2781211_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371959.1|2781200_2781383_-	hypothetical protein	NA	A0A1D7XFI0	Escherichia_phage	51.9	9.4e-08
WP_138371960.1|2781421_2781640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371961.1|2781639_2782008_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371962.1|2782007_2782373_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371963.1|2782669_2782855_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371964.1|2782923_2783139_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371965.1|2783186_2783465_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371966.1|2783476_2783866_-	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	43.9	1.1e-16
WP_138371967.1|2783862_2784165_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371968.1|2784145_2785006_-	DnaD domain protein	NA	A0A1L2JY26	Aeribacillus_phage	33.6	7.4e-18
WP_138371969.1|2785021_2785816_-	hypothetical protein	NA	E9LUM4	Lactobacillus_phage	45.8	6.7e-66
WP_138371970.1|2785787_2786666_-	hypothetical protein	NA	A0A290GJN8	Caldibacillus_phage	65.6	5.6e-98
WP_138371971.1|2786662_2786986_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371972.1|2787053_2787245_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138372223.1|2787248_2787497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371973.1|2787498_2788026_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_138371974.1|2788089_2788344_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138371975.1|2788340_2788589_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_138371976.1|2788754_2789120_+	helix-turn-helix transcriptional regulator	NA	A8ATX5	Listeria_phage	44.1	3.6e-14
WP_138371977.1|2789131_2789605_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A059T7S0	Listeria_phage	38.1	3.3e-20
WP_138371978.1|2789616_2790414_+	DUF4428 domain-containing protein	NA	X5JB37	Clostridium_phage	41.4	5.4e-23
WP_138371979.1|2790479_2790695_+	XRE family transcriptional regulator	NA	NA	NA	NA	NA
WP_138371980.1|2790744_2791668_+	hypothetical protein	NA	A0A1S5SBK8	Streptococcus_phage	28.5	1.2e-21
WP_138371981.1|2792221_2793376_+|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	47.5	1.4e-91
WP_003126516.1|2793471_2795307_-	elongation factor 4	NA	A0A2K9L2P9	Tupanvirus	41.0	3.8e-19
2797728:2797743	attR	TACGATGGGTGATCTT	NA	NA	NA	NA
