The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP054031	Rhizobium sp. JKLM13E chromosome, complete genome	4917934	425217	434489	4917934		Enterobacteria_phage(28.57%)	9	NA	NA
WP_029872910.1|425217_426516_+	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.3	4.9e-98
WP_003547190.1|426525_427002_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_138328316.1|427005_428355_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	39.8	1.4e-34
WP_138328315.1|428354_428966_+	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.9	8.9e-18
WP_138328314.1|429086_429956_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	59.0	1.2e-95
WP_138328313.1|429966_430854_-	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_138328968.1|430857_431913_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.5	1.4e-95
WP_138328312.1|431919_432498_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	44.6	2.4e-33
WP_138328967.1|432521_434489_-	glycosyltransferase family 1 protein	NA	F2Y0P4	Organic_Lake_phycodnavirus	37.7	6.7e-06
>prophage 2
NZ_CP054031	Rhizobium sp. JKLM13E chromosome, complete genome	4917934	507875	518580	4917934	protease	Bacillus_phage(16.67%)	7	NA	NA
WP_138328263.1|507875_509129_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	33.5	6.8e-12
WP_003547334.1|509505_510135_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	59.2	9.4e-63
WP_003547337.1|510438_511716_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	58.6	7.9e-133
WP_029872855.1|512117_514535_+	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	49.5	1.1e-204
WP_003547346.1|514741_515017_+	HU family DNA-binding protein	NA	A0A172Q061	Acinetobacter_phage	34.1	7.1e-07
WP_138328262.1|515386_516286_+	DMT family transporter	NA	NA	NA	NA	NA
WP_173862921.1|516369_518580_+	esterase-like activity of phytase family protein	NA	M4SLV1	Cyanophage	42.9	2.7e-80
>prophage 3
NZ_CP054031	Rhizobium sp. JKLM13E chromosome, complete genome	4917934	807380	820770	4917934	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_138329821.1|807380_808394_+	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	1.6e-24
WP_020049690.1|808412_809270_+	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	38.5	5.6e-34
WP_138329819.1|809266_809983_+	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.8	1.7e-39
WP_017960199.1|810165_810357_+	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	76.9	2.6e-08
WP_138329817.1|810408_811020_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_129420703.1|811016_811844_+	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	47.3	1.6e-54
WP_138329815.1|812044_813328_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.1	4.1e-97
WP_017991200.1|813332_814106_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	2.4e-23
WP_011651660.1|814102_814756_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	33.5	7.6e-15
WP_138329813.1|814997_816599_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	29.2	8.6e-12
WP_138329811.1|816653_817526_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_003539006.1|817836_818184_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	39.1	1.4e-12
WP_138329809.1|818229_820770_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	49.0	3.7e-57
>prophage 4
NZ_CP054031	Rhizobium sp. JKLM13E chromosome, complete genome	4917934	848529	939654	4917934	capsid,head,protease,tRNA,lysis,integrase,terminase,tail,portal	Planktothrix_phage(14.29%)	98	896961:896976	912846:912861
WP_129420733.1|848529_849144_-|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	tRNA	NA	NA	NA	NA
WP_173862934.1|849151_850507_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA	NA
WP_003558968.1|850511_850973_-	acetyl-CoA carboxylase biotin carboxyl carrier protein	NA	NA	NA	NA	NA
WP_138329766.1|850993_851431_-	type II 3-dehydroquinate dehydratase	NA	NA	NA	NA	NA
WP_025394372.1|851592_852351_-	DsbA family protein	NA	NA	NA	NA	NA
WP_138329764.1|852562_853720_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_138329762.1|853740_855081_-	DUF2778 domain-containing protein	NA	NA	NA	NA	NA
WP_138330073.1|855288_857169_-	class I poly(R)-hydroxyalkanoic acid synthase	NA	NA	NA	NA	NA
WP_138329761.1|857274_857688_+	hypothetical protein	NA	NA	NA	NA	NA
WP_026160221.1|857910_859128_+	LL-diaminopimelate aminotransferase	NA	NA	NA	NA	NA
WP_138329758.1|859189_860515_+	homoserine dehydrogenase	NA	NA	NA	NA	NA
WP_138329757.1|860676_860934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138329755.1|861013_862816_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.5	8.4e-56
WP_138329753.1|863296_864658_+	CapA family protein	NA	NA	NA	NA	NA
WP_138329752.1|864757_865771_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.7	1.4e-12
WP_138329750.1|865767_866712_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.3	5.3e-17
WP_138329748.1|866716_867670_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_138329746.1|867666_868617_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_138329744.1|868650_870339_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_138329743.1|870389_871373_+	D-2-hydroxyacid dehydrogenase family protein	NA	M1NSB9	Streptococcus_phage	30.1	1.0e-18
WP_138329741.1|871442_872354_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_138329739.1|872472_872676_+	rubredoxin	NA	NA	NA	NA	NA
WP_138329737.1|872701_873913_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_138329736.1|873966_874707_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138329734.1|874742_875474_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_138329732.1|875526_877221_+	carboxylesterase family protein	NA	NA	NA	NA	NA
WP_138329730.1|877456_878608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138329726.1|880334_880775_-	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_003539135.1|880970_881549_+	CspA family cold shock protein	NA	A0A1W6JNX5	Morganella_phage	42.4	3.9e-07
WP_138329724.1|881551_882040_+	DUF192 domain-containing protein	NA	NA	NA	NA	NA
WP_138329722.1|882250_883054_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329721.1|883123_883660_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329719.1|883711_884068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329717.1|884370_885336_+	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
WP_138329715.1|885636_886032_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138329713.1|886305_886974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329711.1|886966_887896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329709.1|888101_888395_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329707.1|888512_888920_-	DUF2293 domain-containing protein	NA	NA	NA	NA	NA
WP_138329705.1|888829_889036_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329704.1|889089_889347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329702.1|889346_889589_-	hypothetical protein	NA	NA	NA	NA	NA
WP_173862935.1|889681_890404_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329696.1|890739_891147_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329694.1|892085_892439_-|tail	phage tail protein	tail	L7TKL1	Rhizobium_phage	50.0	2.0e-25
WP_138329692.1|892441_894694_-	tape measure protein	NA	I6PCW3	Cronobacter_phage	34.3	6.0e-19
WP_138330071.1|894704_896309_-|terminase	terminase large subunit	terminase	A0A2K5B285	Erysipelothrix_phage	33.9	1.7e-76
WP_138329690.1|896314_896704_-|terminase	phage terminase small subunit P27 family	terminase	A0A1B3B1V2	Gordonia_phage	36.0	5.3e-08
WP_138330069.1|896700_897012_-|head	phage head closure protein	head	NA	NA	NA	NA
896961:896976	attL	GAGCGGTCAAGCGATC	NA	NA	NA	NA
WP_138329689.1|897011_897431_-	DUF3168 domain-containing protein	NA	NA	NA	NA	NA
WP_138329687.1|897427_897862_-	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_138329685.1|897848_898190_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2H4J8C5	uncultured_Caudovirales_phage	32.7	2.2e-05
WP_138329684.1|898186_898579_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329682.1|898597_899185_-	hypothetical protein	NA	L7TS69	Rhizobium_phage	42.3	1.6e-27
WP_138329680.1|899184_899535_-	HNH endonuclease	NA	NA	NA	NA	NA
WP_138329678.1|899531_900113_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329676.1|900116_900512_-	hypothetical protein	NA	B0VK34	Azospirillum_phage	36.0	1.0e-06
WP_138329674.1|900524_902117_-|capsid	phage major capsid protein	capsid	A0A192Y5T6	Salmonella_phage	39.4	1.2e-50
WP_138329673.1|902113_902455_-	gene transfer agent family protein	NA	NA	NA	NA	NA
WP_138329671.1|902451_903657_-|portal	phage portal protein	portal	A0A2K5B287	Erysipelothrix_phage	31.2	3.8e-44
WP_173862936.1|903790_905041_-|integrase	site-specific integrase	integrase	NA	NA	NA	NA
WP_003539138.1|906168_906474_+	ETC complex I subunit	NA	NA	NA	NA	NA
WP_138329667.1|906815_907655_+	isocitrate lyase/phosphoenolpyruvate mutase family protein	NA	NA	NA	NA	NA
WP_138329665.1|907738_908029_-	DUF982 domain-containing protein	NA	NA	NA	NA	NA
WP_003539245.1|908437_908617_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138329663.1|908722_909034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329661.1|909194_909644_-	DUF3597 domain-containing protein	NA	NA	NA	NA	NA
WP_138329659.1|910114_910720_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012757299.1|910778_911552_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.6	1.6e-32
WP_138329657.1|911587_912742_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_138329656.1|912743_913946_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
912846:912861	attR	GATCGCTTGACCGCTC	NA	NA	NA	NA
WP_003559026.1|914050_915076_-	amino acid ABC transporter substrate-binding protein	NA	A0A1B1IT51	uncultured_Mediterranean_phage	45.2	3.9e-82
WP_138329654.1|915434_916625_+	cystathionine beta-lyase	NA	NA	NA	NA	NA
WP_138329652.1|916656_917811_-	FAD-dependent monooxygenase	NA	NA	NA	NA	NA
WP_138329650.1|917839_918085_-	zinc-finger domain-containing protein	NA	NA	NA	NA	NA
WP_138329648.1|918244_919030_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_017960263.1|919159_919993_+	serine O-acetyltransferase	NA	NA	NA	NA	NA
WP_003539277.1|920133_920337_+	DUF3126 family protein	NA	NA	NA	NA	NA
WP_138329646.1|920611_920974_+	phasin family protein	NA	NA	NA	NA	NA
WP_017988219.1|921250_921601_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.1	1.7e-13
WP_138329644.1|921611_924104_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.8	4.9e-171
WP_138329643.1|924176_924467_-	Dabb family protein	NA	NA	NA	NA	NA
WP_138329641.1|924524_924956_-	HIT family protein	NA	NA	NA	NA	NA
WP_138329639.1|925108_926299_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_138329637.1|926478_927198_-	glycerophosphodiester phosphodiesterase	NA	A0A1J0F961	Only_Syngen_Nebraska_virus	27.0	1.7e-12
WP_138329635.1|927194_927665_-	RidA family protein	NA	NA	NA	NA	NA
WP_020049770.1|927801_928638_+	cell envelope integrity EipB family protein	NA	NA	NA	NA	NA
WP_138329634.1|928828_929905_+	toxic anion resistance protein	NA	H6X3X9	Enterobacteria_phage	22.4	6.0e-09
WP_138330065.1|929919_931488_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_138329632.1|931495_932113_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
WP_138329630.1|932112_933219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003539287.1|933400_934168_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_029873155.1|934410_935337_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_003539289.1|935433_936156_+	UMP kinase	NA	NA	NA	NA	NA
WP_138329628.1|936320_936881_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_003539291.1|936918_937662_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	42.7	1.1e-20
WP_138329626.1|937661_938492_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_064654224.1|938520_939654_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
>prophage 5
NZ_CP054031	Rhizobium sp. JKLM13E chromosome, complete genome	4917934	1100595	1110849	4917934		uncultured_Mediterranean_phage(83.33%)	8	NA	NA
WP_138329484.1|1100595_1103517_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.2	0.0e+00
WP_138329483.1|1103799_1104312_+	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	73.7	1.2e-44
WP_029875185.1|1104441_1105089_-	MarC family protein	NA	NA	NA	NA	NA
WP_138329482.1|1105325_1108163_+	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	8.0e-77
WP_173862938.1|1108497_1108653_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138329481.1|1109200_1109695_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	37.8	4.7e-25
WP_138329480.1|1109737_1110310_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	52.6	2.2e-42
WP_003539661.1|1110339_1110849_+	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	59.4	2.5e-45
>prophage 6
NZ_CP054031	Rhizobium sp. JKLM13E chromosome, complete genome	4917934	2147644	2157605	4917934		Vibrio_phage(33.33%)	7	NA	NA
WP_018074040.1|2147644_2149702_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.6	1.7e-36
WP_138330445.1|2150169_2150517_-	GFA family protein	NA	NA	NA	NA	NA
WP_138330444.1|2150526_2151564_-	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	68.6	7.1e-15
WP_138330443.1|2151676_2152864_-	glycine C-acetyltransferase	NA	D2TEZ5	Emiliania_huxleyi_virus	27.8	8.3e-36
WP_138330442.1|2152929_2153658_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	42.4	5.2e-49
WP_138330441.1|2153727_2155596_-	DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	35.9	4.7e-78
WP_138330440.1|2155595_2157605_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	41.7	3.2e-88
>prophage 7
NZ_CP054031	Rhizobium sp. JKLM13E chromosome, complete genome	4917934	3064958	3075007	4917934		Rhodococcus_phage(12.5%)	9	NA	NA
WP_138334980.1|3064958_3065669_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	49.6	4.2e-51
WP_138334979.1|3065668_3066025_+	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_138334978.1|3066021_3066750_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	38.8	4.4e-40
WP_138334977.1|3066754_3067978_-	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	31.8	1.9e-14
WP_138334976.1|3068082_3069057_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A160DHK0	Gordonia_phage	74.8	1.8e-137
WP_138334975.1|3069220_3071425_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	52.1	1.9e-211
WP_138334974.1|3071403_3071808_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	43.1	1.9e-16
WP_018243700.1|3071822_3072044_-	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	7.9e-17
WP_138334973.1|3072712_3075007_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	40.6	1.4e-124
>prophage 1
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	0	5681	285018		Tupanvirus(100.0%)	8	NA	NA
WP_138334285.1|245_737_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_138334286.1|810_1332_-	DUF992 domain-containing protein	NA	NA	NA	NA	NA
WP_003552191.1|1917_2166_+	membrane protein	NA	NA	NA	NA	NA
WP_138334287.1|2186_2546_+	EF-hand domain-containing protein	NA	NA	NA	NA	NA
WP_003549551.1|2628_2793_-	DUF1328 domain-containing protein	NA	NA	NA	NA	NA
WP_138334288.1|2892_3483_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138334289.1|3564_3957_-	VOC family protein	NA	NA	NA	NA	NA
WP_138334290.1|4058_5681_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L0W2	Tupanvirus	29.9	3.3e-59
>prophage 2
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	15318	23104	285018		Ochrobactrum_phage(40.0%)	6	NA	NA
WP_173863103.1|15318_17334_-	polysaccharide biosynthesis protein	NA	L7RD47	Acanthamoeba_polyphaga_moumouvirus	24.3	3.7e-12
WP_138333937.1|17457_18024_-	sugar transferase	NA	NA	NA	NA	NA
WP_138333939.1|18313_19606_-	replication initiation protein RepC	NA	L7TKN6	Rhizobium_phage	28.8	6.5e-18
WP_138333941.1|19755_20817_-	plasmid partitioning protein RepB	NA	A0A240F4U0	Ochrobactrum_phage	44.6	5.6e-68
WP_062941826.1|20859_22074_-	plasmid partitioning protein RepA	NA	A0A240F4U1	Ochrobactrum_phage	70.2	1.7e-161
WP_062941828.1|22645_23104_-	helix-turn-helix transcriptional regulator	NA	Q8W6G2	Sinorhizobium_phage	51.9	5.5e-28
>prophage 3
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	26619	27708	285018		Planktothrix_phage(100.0%)	1	NA	NA
WP_138333948.1|26619_27708_+	methionine ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.6	1.6e-30
>prophage 4
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	43081	43912	285018		Bacillus_virus(100.0%)	1	NA	NA
WP_138333972.1|43081_43912_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	41.0	9.0e-29
>prophage 5
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	50347	51430	285018		Planktothrix_phage(100.0%)	1	NA	NA
WP_138333986.1|50347_51430_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	35.0	5.4e-26
>prophage 6
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	58244	59990	285018		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_138333995.1|58244_59990_-	thiol reductant ABC exporter subunit CydD	NA	F2Y302	Organic_Lake_phycodnavirus	31.9	2.7e-11
>prophage 7
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	68146	77325	285018		Planktothrix_phage(33.33%)	9	NA	NA
WP_138334010.1|68146_69202_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	35.0	1.6e-27
WP_138334012.1|69201_69981_+	glycerophosphodiester phosphodiesterase	NA	A0A173GBD0	Staphylococcus_phage	35.2	3.7e-08
WP_138334014.1|69964_70969_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.0	1.3e-18
WP_138334015.1|70968_71778_+	inositol monophosphatase	NA	NA	NA	NA	NA
WP_138334017.1|71827_73483_-	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	37.3	1.5e-19
WP_171599625.1|73613_74477_-	glycerophosphodiester phosphodiesterase	NA	NA	NA	NA	NA
WP_138334021.1|74645_75740_-	alanine--glyoxylate aminotransferase family protein	NA	NA	NA	NA	NA
WP_138334023.1|75751_76534_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.0	4.3e-17
WP_138334025.1|76530_77325_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.7	2.6e-17
>prophage 8
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	83404	84889	285018		Staphylococcus_phage(100.0%)	1	NA	NA
WP_138334035.1|83404_84889_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.7	7.2e-13
>prophage 9
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	97619	109171	285018		Planktothrix_phage(50.0%)	10	NA	NA
WP_138334055.1|97619_98690_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.6	4.5e-25
WP_138334056.1|98991_100536_+	alkaline phosphatase family protein	NA	A0A2K9L727	Tupanvirus	24.5	4.4e-13
WP_138334058.1|100570_102205_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_138334060.1|102393_103401_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	27.7	2.4e-12
WP_138334061.1|103391_104393_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	30.1	8.9e-15
WP_138334063.1|104396_105326_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_138334065.1|105337_106207_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_138334066.1|106338_107361_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	29.5	2.7e-27
WP_138334068.1|107399_108353_+	substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_138334070.1|108349_109171_+	sugar ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.0	2.5e-15
>prophage 10
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	115550	116630	285018		Mycoplasma_phage(100.0%)	1	NA	NA
WP_138334086.1|115550_116630_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	45.2	4.4e-20
>prophage 11
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	121186	121972	285018		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_138334097.1|121186_121972_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	27.3	8.2e-08
>prophage 12
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	126056	127589	285018		Staphylococcus_phage(100.0%)	1	NA	NA
WP_138334105.1|126056_127589_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.1	1.9e-16
>prophage 13
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	132711	140309	285018		Indivirus(25.0%)	7	NA	NA
WP_138334116.1|132711_133626_-	J domain-containing protein	NA	A0A1V0SE10	Indivirus	47.1	2.7e-10
WP_138334118.1|133770_134238_-	universal stress protein	NA	NA	NA	NA	NA
WP_138334300.1|134600_136484_+	sensor histidine kinase	NA	A0A1V0SGX0	Hokovirus	26.0	8.3e-06
WP_171599554.1|136434_137106_+	response regulator	NA	NA	NA	NA	NA
WP_138334121.1|137226_137610_+	response regulator	NA	NA	NA	NA	NA
WP_138334301.1|137886_138807_+	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	28.1	1.2e-18
WP_138334123.1|138803_140309_+	arylsulfatase	NA	A0A2P0VMN7	Tetraselmis_virus	25.8	1.1e-21
>prophage 14
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	146064	156911	285018		Aeromonas_phage(50.0%)	10	NA	NA
WP_138334130.1|146064_147774_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	26.8	1.3e-10
WP_003549355.1|147770_148622_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_138334132.1|148618_149557_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_138334134.1|149608_150499_-	proline iminopeptidase-family hydrolase	NA	NA	NA	NA	NA
WP_173863104.1|150628_151441_+	LuxR family transcriptional regulator	NA	A0A1I9KF49	Aeromonas_phage	26.6	9.1e-10
WP_138334135.1|151505_152408_+	proline iminopeptidase-family hydrolase	NA	NA	NA	NA	NA
WP_138334137.1|152501_153359_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_138334139.1|153453_154359_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_138334141.1|154398_155310_-	acetamidase/formamidase family protein	NA	A0A1V0S8X7	Catovirus	27.1	9.0e-06
WP_138334145.1|155642_156911_-	serine hydroxymethyltransferase	NA	A0A240F2Y9	Aeromonas_phage	53.6	4.0e-105
>prophage 15
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	168992	175969	285018		Bacillus_virus(50.0%)	4	NA	NA
WP_138334160.1|168992_170081_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.1	3.8e-27
WP_138334161.1|170093_170942_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_138334163.1|171804_172803_+	4-hydroxyproline epimerase	NA	NA	NA	NA	NA
WP_138334165.1|172993_175969_+	phosphoglycerate dehydrogenase	NA	A0A2R8FDS8	Brazilian_cedratvirus	25.4	4.1e-07
>prophage 16
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	189604	193599	285018		Tupanvirus(33.33%)	4	NA	NA
WP_138334178.1|189604_190819_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2K9L0G1	Tupanvirus	30.7	1.8e-38
WP_138334179.1|190815_191790_-	NAD-dependent epimerase/dehydratase family protein	NA	A0A2H4UUK0	Bodo_saltans_virus	35.0	2.9e-42
WP_138334181.1|191786_192506_-	acyltransferase	NA	NA	NA	NA	NA
WP_138334183.1|192495_193599_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	32.8	2.0e-47
>prophage 17
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	198489	199533	285018		Tupanvirus(100.0%)	1	NA	NA
WP_138334192.1|198489_199533_-	SDR family oxidoreductase	NA	A0A2K9KZK0	Tupanvirus	47.5	3.8e-85
>prophage 18
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	215439	217606	285018		Acanthocystis_turfacea_Chlorella_virus(50.0%)	2	NA	NA
WP_138334206.1|215439_216543_+	GDP-mannose 4,6-dehydratase	NA	M1HGM9	Acanthocystis_turfacea_Chlorella_virus	63.9	3.1e-130
WP_062941765.1|216535_217606_+	GDP-L-fucose synthase	NA	R9S8B8	Prochlorococcus_phage	56.3	3.8e-96
>prophage 19
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	221303	222224	285018		Burkholderia_virus(100.0%)	1	NA	NA
WP_138334211.1|221303_222224_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	26.6	1.7e-12
>prophage 20
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	226185	227244	285018		Mycobacterium_phage(100.0%)	1	NA	NA
WP_138334222.1|226185_227244_-	alpha/beta fold hydrolase	NA	A0A1D8EUH4	Mycobacterium_phage	26.0	2.7e-06
>prophage 21
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	247570	252297	285018		uncultured_Mediterranean_phage(33.33%)	5	NA	NA
WP_138334249.1|247570_248404_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	44.7	2.6e-28
WP_003549481.1|248447_249212_-	FadR family transcriptional regulator	NA	NA	NA	NA	NA
WP_138334250.1|249236_250301_-	four-carbon acid sugar kinase family protein	NA	NA	NA	NA	NA
WP_026236973.1|250297_251290_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	30.3	1.7e-18
WP_138334252.1|251289_252297_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	24.3	5.4e-12
>prophage 22
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	264735	265524	285018		Planktothrix_phage(100.0%)	1	NA	NA
WP_138334271.1|264735_265524_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	1.6e-22
>prophage 23
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	269543	271094	285018		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_138334276.1|269543_271094_+	sugar ABC transporter ATP-binding protein	NA	M1HP82	Acanthocystis_turfacea_Chlorella_virus	25.0	6.4e-12
>prophage 24
NZ_CP054034	Rhizobium sp. JKLM13E plasmid pPR13E03, complete sequence	285018	278601	283208	285018		Bacillus_virus(66.67%)	4	NA	NA
WP_138334282.1|278601_279672_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.9	2.7e-17
WP_138334283.1|279681_280758_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	29.8	2.2e-19
WP_138334284.1|280799_282314_-	glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_003549541.1|282434_283208_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.9	1.0e-18
