The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP054027	Rhizobium sp. JKLM19E chromosome, complete genome	4373438	495729	502888	4373438		Mycobacterium_phage(28.57%)	8	NA	NA
WP_025417128.1|495729_495951_+	glutaredoxin-like protein NrdH	NA	V5UN81	Mycobacterium_phage	52.1	6.1e-17
WP_003566904.1|495963_496380_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	34.1	2.9e-12
WP_025417126.1|496358_498557_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	51.5	6.1e-210
WP_138386439.1|498787_499762_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	R4TBI6	Mycobacterium_phage	74.8	2.5e-139
WP_025417124.1|499866_501090_+	adenylate/guanylate cyclase domain-containing protein	NA	M1HLN3	Pelagibacter_phage	27.5	3.2e-14
WP_138386438.1|501096_501825_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	38.7	3.1e-41
WP_003566894.1|501821_502178_-	6-carboxytetrahydropterin synthase QueD	NA	NA	NA	NA	NA
WP_025417122.1|502177_502888_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2P1JXV3	Rhodococcus_phage	47.3	1.3e-47
>prophage 2
NZ_CP054027	Rhizobium sp. JKLM19E chromosome, complete genome	4373438	2258313	2268518	4373438		uncultured_Mediterranean_phage(83.33%)	8	NA	NA
WP_003573154.1|2258313_2258823_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	59.4	3.2e-45
WP_003573156.1|2258851_2259424_-	peptidylprolyl isomerase	NA	A0A1B1IVS0	uncultured_Mediterranean_phage	53.2	7.5e-43
WP_128397483.1|2259497_2259992_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	36.5	6.7e-24
WP_003573160.1|2260523_2260679_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138384294.1|2261009_2263832_-	DNA gyrase subunit A	NA	A0A1B1IVS2	uncultured_Mediterranean_phage	42.2	4.3e-75
WP_138384295.1|2264068_2264716_+	MarC family protein	NA	NA	NA	NA	NA
WP_025416164.1|2264803_2265313_-	single-stranded DNA-binding protein	NA	R9TP78	Rhizobium_phage	56.8	9.3e-45
WP_138384296.1|2265596_2268518_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	62.1	0.0e+00
>prophage 3
NZ_CP054027	Rhizobium sp. JKLM19E chromosome, complete genome	4373438	2471170	2484270	4373438	tRNA	uncultured_Mediterranean_phage(90.91%)	13	NA	NA
WP_138384347.1|2471170_2473711_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	47.4	6.9e-56
WP_003573534.1|2473756_2474104_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	38.0	3.2e-12
WP_003573536.1|2474306_2475179_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_003573538.1|2475233_2476826_-	peptidoglycan DD-metalloendopeptidase family protein	NA	I3PV24	Clostridium_phage	29.2	8.6e-12
WP_003573541.1|2476965_2477619_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	35.9	3.6e-17
WP_003573544.1|2477615_2478389_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	30.2	3.1e-23
WP_003573546.1|2478393_2479677_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	45.3	3.7e-98
WP_003573547.1|2479776_2480604_-	twin-arginine translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	46.1	1.2e-52
WP_138384348.1|2480600_2481212_-	twin-arginine translocase subunit TatB	NA	NA	NA	NA	NA
WP_003538990.1|2481262_2481454_-	twin-arginine translocase TatA/TatE family subunit	NA	A0A1B1IVR9	uncultured_Mediterranean_phage	72.1	8.9e-09
WP_003573552.1|2481637_2482354_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	47.5	9.1e-38
WP_003573554.1|2482350_2483208_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	37.2	1.2e-33
WP_003573557.1|2483256_2484270_-	beta-N-acetylhexosaminidase	NA	A0A1B1IVS3	uncultured_Mediterranean_phage	42.6	2.8e-24
>prophage 4
NZ_CP054027	Rhizobium sp. JKLM19E chromosome, complete genome	4373438	2799200	2808419	4373438		Organic_Lake_phycodnavirus(14.29%)	9	NA	NA
WP_025415838.1|2799200_2801177_+	glycosyltransferase family 1 protein	NA	F2Y0P4	Organic_Lake_phycodnavirus	36.4	8.7e-06
WP_138384834.1|2801201_2801780_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A218MN57	uncultured_virus	41.8	3.2e-33
WP_025415836.1|2801786_2802842_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	51.8	6.3e-96
WP_138384833.1|2802845_2803733_+	dTDP-4-dehydrorhamnose reductase	NA	NA	NA	NA	NA
WP_003574061.1|2803742_2804612_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	59.5	3.4e-95
WP_003574063.1|2804709_2805321_-	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	35.6	1.2e-17
WP_138384832.1|2805320_2806631_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	40.8	5.0e-34
WP_003547190.1|2806634_2807111_-	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_025415833.1|2807120_2808419_-	serine hydroxymethyltransferase	NA	A0A219Y950	Aeromonas_phage	51.3	4.9e-98
>prophage 1
NZ_CP054030	Rhizobium sp. JKLM19E plasmid pPR19E03	283207	128144	136441	283207	transposase,integrase	Virus_Rctr85(25.0%)	8	127995:128009	138977:138991
127995:128009	attL	TCTAGCAGGCTGCTG	NA	NA	NA	NA
WP_173883907.1|128144_128495_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_138386312.1|128618_129632_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1P8DJ76	Virus_Rctr85	29.3	2.1e-11
WP_138386311.1|129628_130546_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_138386310.1|130539_131784_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1I9SC88	Mycobacterium_phage	29.6	3.9e-12
WP_173883908.1|131992_132256_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_138386365.1|132330_133929_+|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	32.2	7.7e-53
WP_138386577.1|135690_136038_-	IS66 family insertion sequence element accessory protein TnpB	NA	A0A0P0ZDM8	Stx2-converting_phage	64.5	1.5e-38
WP_173883909.1|136132_136441_-|transposase	transposase	transposase	NA	NA	NA	NA
138977:138991	attR	CAGCAGCCTGCTAGA	NA	NA	NA	NA
