assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	1	402344-402444	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|NZ_CP040560.1_394951_395335_-,NA|98aa|up_6|NZ_CP040560.1_396288_396582_-,NA|34aa|up_1|NZ_CP040560.1_401568_401670_+,NA|86aa|up_0|NZ_CP040560.1_401877_402135_-,NA|221aa|down_1|NZ_CP040560.1_403534_404197_-,NA|179aa|down_7|NZ_CP040560.1_410288_410825_-	NA|194aa|up_9|NZ_CP040560.1_394303_394885_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP040560.1_394951_395335_-	NA	NA|209aa|up_7|NZ_CP040560.1_395589_396216_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP040560.1_396288_396582_-	NA	NA|508aa|up_5|NZ_CP040560.1_396660_398184_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP040560.1_398199_398769_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP040560.1_399260_400016_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP040560.1_400095_401484_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP040560.1_401568_401670_+	NA	NA|86aa|up_0|NZ_CP040560.1_401877_402135_-	NA	NA|319aa|down_0|NZ_CP040560.1_402460_403417_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP040560.1_403534_404197_-	NA	NA|136aa|down_2|NZ_CP040560.1_404339_404747_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP040560.1_405259_405838_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP040560.1_405837_407106_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP040560.1_407143_408610_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP040560.1_408634_410176_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP040560.1_410288_410825_-	NA	NA|235aa|down_8|NZ_CP040560.1_411217_411922_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP040560.1_412320_412593_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	2	641695-641787	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_4|NZ_CP040560.1_638178_638286_+,NA|117aa|up_1|NZ_CP040560.1_640397_640748_-,NA|169aa|down_4|NZ_CP040560.1_645534_646041_+,NA|239aa|down_5|NZ_CP040560.1_646202_646919_+	NA|179aa|up_9|NZ_CP040560.1_633529_634066_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_8|NZ_CP040560.1_634234_634711_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_7|NZ_CP040560.1_634750_636046_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_6|NZ_CP040560.1_636073_636595_+	pfam08741, YwhD, YwhD family	NA|337aa|up_5|NZ_CP040560.1_637093_638104_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_4|NZ_CP040560.1_638178_638286_+	NA	NA|128aa|up_3|NZ_CP040560.1_638411_638795_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|NZ_CP040560.1_638791_640453_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|117aa|up_1|NZ_CP040560.1_640397_640748_-	NA	NA|212aa|up_0|NZ_CP040560.1_640841_641477_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP040560.1_641915_642743_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP040560.1_642890_643841_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP040560.1_643895_644615_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP040560.1_644598_645399_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP040560.1_645534_646041_+	NA	NA|239aa|down_5|NZ_CP040560.1_646202_646919_+	NA	NA|263aa|down_6|NZ_CP040560.1_647087_647876_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP040560.1_648126_648501_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP040560.1_649448_650378_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP040560.1_650572_650797_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	3	704679-704777	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAGAGCCCCTAATTAATAAATTAAAAGGGG	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|39aa|up_2|NZ_CP040560.1_702706_702823_+,NA|230aa|down_2|NZ_CP040560.1_706598_707288_-,NA|100aa|down_5|NZ_CP040560.1_708457_708757_+	NA|336aa|up_9|NZ_CP040560.1_694486_695494_+	pfam01384, PHO4, Phosphate transporter family	NA|266aa|up_8|NZ_CP040560.1_696081_696879_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|215aa|up_7|NZ_CP040560.1_697239_697884_+	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|717aa|up_6|NZ_CP040560.1_698580_700731_+	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|120aa|up_5|NZ_CP040560.1_700876_701236_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|239aa|up_4|NZ_CP040560.1_701425_702142_+	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|158aa|up_3|NZ_CP040560.1_702141_702615_+	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|39aa|up_2|NZ_CP040560.1_702706_702823_+	NA	NA|215aa|up_1|NZ_CP040560.1_702967_703612_+	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|289aa|up_0|NZ_CP040560.1_703727_704594_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|407aa|down_0|NZ_CP040560.1_704794_706015_+	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|163aa|down_1|NZ_CP040560.1_706011_706500_+	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|230aa|down_2|NZ_CP040560.1_706598_707288_-	NA	NA|148aa|down_3|NZ_CP040560.1_707414_707858_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|132aa|down_4|NZ_CP040560.1_707924_708320_+	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|100aa|down_5|NZ_CP040560.1_708457_708757_+	NA	NA|181aa|down_6|NZ_CP040560.1_708836_709379_+	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|189aa|down_7|NZ_CP040560.1_709474_710041_-	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|153aa|down_8|NZ_CP040560.1_710042_710501_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|228aa|down_9|NZ_CP040560.1_710503_711187_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	4	804027-804112	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	6	804057-804082|804057-804082|804057-804082|804057-804082|804057-804082|804057-804082	NZ_CP040560.1_2777009-2777034|NZ_CP040560.1_2777065-2777090|NZ_CP040560.1_767077-767052|NZ_CP040560.1_1129029-1129004|NZ_CP040560.1_767133-767108|NZ_CP040560.1_910159-910134	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|280aa|up_9|NZ_CP040560.1_791279_792119_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP040560.1_792292_792943_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP040560.1_792939_793176_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP040560.1_793444_795430_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP040560.1_795437_798284_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP040560.1_798945_799878_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP040560.1_799883_800723_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP040560.1_800730_801216_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP040560.1_801223_802663_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP040560.1_802729_803665_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP040560.1_804486_805398_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP040560.1_805394_806390_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP040560.1_806499_807444_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP040560.1_808017_808605_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP040560.1_808847_809750_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP040560.1_810452_811082_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_6|NZ_CP040560.1_811841_812855_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP040560.1_812907_813918_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP040560.1_814056_815247_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP040560.1_815368_816130_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	5	847299-847380	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	847323-847356|847323-847356	NZ_CP040560.1_1350587-1350554|NZ_CP040560.1_1439739-1439772	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP040560.1_846201_846315_+,NA	NA|206aa|up_9|NZ_CP040560.1_841056_841674_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP040560.1_841828_842323_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP040560.1_842721_843144_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP040560.1_843291_844008_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP040560.1_844090_844630_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP040560.1_844779_845100_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP040560.1_845243_845600_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP040560.1_845757_846138_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP040560.1_846201_846315_+	NA	NA|293aa|up_0|NZ_CP040560.1_846316_847195_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP040560.1_847936_848323_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP040560.1_848315_848612_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP040560.1_848861_849887_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP040560.1_849879_850575_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP040560.1_850592_851414_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|407aa|down_5|NZ_CP040560.1_851556_852777_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|243aa|down_6|NZ_CP040560.1_852864_853593_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|243aa|down_7|NZ_CP040560.1_853616_854345_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|153aa|down_8|NZ_CP040560.1_854361_854820_-	pfam06114, Peptidase_M78, IrrE N-terminal-like domain	NA|111aa|down_9|NZ_CP040560.1_854831_855164_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	6	910160-910442	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	8	910190-910215|910190-910215|910190-910215|910190-910215|910190-910215|910304-910329|910304-910329|910304-910329	NZ_CP040560.1_910134-910159|NZ_CP040560.1_2777034-2777009|NZ_CP040560.1_2777090-2777065|NZ_CP040560.1_767052-767077|NZ_CP040560.1_1129004-1129029|NZ_CP040560.1_804138-804113|NZ_CP040560.1_1977588-1977563|NZ_CP040560.1_363677-363702	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP040560.1_899048_900545_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP040560.1_900537_900867_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP040560.1_900878_901307_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP040560.1_901299_903705_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP040560.1_903835_904219_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP040560.1_904282_904876_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP040560.1_905291_905669_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP040560.1_906030_907158_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP040560.1_907465_908656_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP040560.1_908764_910009_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP040560.1_910511_911441_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP040560.1_911682_913062_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP040560.1_913051_914257_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP040560.1_914607_915939_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP040560.1_916263_916839_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP040560.1_916843_917368_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP040560.1_917383_917959_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP040560.1_918118_921595_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP040560.1_921595_925249_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP040560.1_925414_926317_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	7	1044573-1044660	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP040560.1_1044449_1044569_+,NA|45aa|down_0|NZ_CP040560.1_1044669_1044804_-,NA|432aa|down_1|NZ_CP040560.1_1044955_1046251_+,NA|68aa|down_2|NZ_CP040560.1_1046271_1046475_-	NA|730aa|up_9|NZ_CP040560.1_1033027_1035217_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP040560.1_1035195_1036680_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP040560.1_1036672_1037701_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP040560.1_1037703_1038270_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP040560.1_1038284_1039763_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP040560.1_1039784_1041032_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP040560.1_1041296_1042103_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP040560.1_1042095_1043496_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP040560.1_1043510_1044086_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP040560.1_1044449_1044569_+	NA	NA|45aa|down_0|NZ_CP040560.1_1044669_1044804_-	NA	NA|432aa|down_1|NZ_CP040560.1_1044955_1046251_+	NA	NA|68aa|down_2|NZ_CP040560.1_1046271_1046475_-	NA	NA|391aa|down_3|NZ_CP040560.1_1046675_1047848_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|NZ_CP040560.1_1047901_1048444_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|NZ_CP040560.1_1048597_1048864_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|NZ_CP040560.1_1048866_1050585_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|NZ_CP040560.1_1050821_1051055_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|NZ_CP040560.1_1051252_1052614_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|NZ_CP040560.1_1052610_1053630_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	8	1128834-1129020	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	32	1128853-1128889|1128853-1128889|1128853-1128889|1128853-1128889|1128853-1128889|1128853-1128889|1128853-1128889|1128853-1128889|1128853-1128889|1128909-1128945|1128909-1128945|1128909-1128945|1128909-1128945|1128909-1128945|1128909-1128945|1128909-1128945|1128909-1128945|1128909-1128945|1128909-1128945|1128909-1128945|1128909-1128945|1128965-1129001|1128965-1129001|1128965-1129001|1128965-1129001|1128965-1129001|1128965-1129001|1128965-1129001|1128965-1129001|1128965-1129001|1128965-1129001|1128965-1129001	NZ_CP040560.1_1844423-1844459|NZ_CP040560.1_1844537-1844573|NZ_CP040560.1_2527738-2527774|NZ_CP040560.1_798631-798595|NZ_CP040560.1_798686-798650|NZ_CP040560.1_847396-847360|NZ_CP040560.1_1665896-1665860|NZ_CP040560.1_1988377-1988341|NZ_CP040560.1_2777128-2777092|NZ_CP040560.1_363694-363730|NZ_CP040560.1_804121-804085|NZ_CP040560.1_1028321-1028285|NZ_CP040560.1_1350513-1350549|NZ_CP040560.1_1977571-1977535|NZ_CP040560.1_1439813-1439777|NZ_CP040560.1_1665954-1665918|NZ_CP040560.1_2611424-2611388|NZ_CP040560.1_1124941-1124977|NZ_CP040560.1_1129021-1129057|NZ_CP040560.1_1977512-1977476|NZ_CP040560.1_2777073-2777037|NZ_CP040560.1_138873-138909|NZ_CP040560.1_640733-640769|NZ_CP040560.1_1350571-1350607|NZ_CP040560.1_756690-756654|NZ_CP040560.1_804177-804141|NZ_CP040560.1_1439755-1439719|NZ_CP040560.1_1979028-1978992|NZ_CP040560.1_1979087-1979051|NZ_CP040560.1_1054517-1054481|NZ_CP040560.1_2502491-2502455|NZ_CP040560.1_1124997-1125033	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|169aa|up_8|NZ_CP040560.1_1122782_1123289_+,NA|62aa|up_5|NZ_CP040560.1_1125201_1125387_-,NA|83aa|up_4|NZ_CP040560.1_1125596_1125845_-,NA|78aa|up_3|NZ_CP040560.1_1126008_1126242_-,NA|49aa|up_1|NZ_CP040560.1_1128350_1128497_+,NA|75aa|up_0|NZ_CP040560.1_1128453_1128678_+,NA|76aa|down_6|NZ_CP040560.1_1136033_1136261_+	NA|134aa|up_9|NZ_CP040560.1_1121709_1122111_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|NZ_CP040560.1_1122782_1123289_+	NA	NA|166aa|up_7|NZ_CP040560.1_1123547_1124045_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|NZ_CP040560.1_1124198_1124549_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|NZ_CP040560.1_1125201_1125387_-	NA	NA|83aa|up_4|NZ_CP040560.1_1125596_1125845_-	NA	NA|78aa|up_3|NZ_CP040560.1_1126008_1126242_-	NA	NA|320aa|up_2|NZ_CP040560.1_1126718_1127678_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP040560.1_1128350_1128497_+	NA	NA|75aa|up_0|NZ_CP040560.1_1128453_1128678_+	NA	NA|239aa|down_0|NZ_CP040560.1_1129234_1129951_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP040560.1_1130058_1130784_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP040560.1_1130878_1131604_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP040560.1_1132041_1133043_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP040560.1_1133065_1133998_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|NZ_CP040560.1_1134220_1135726_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP040560.1_1136033_1136261_+	NA	NA|316aa|down_7|NZ_CP040560.1_1136565_1137513_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP040560.1_1137761_1137950_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP040560.1_1138861_1138996_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	9	2212268-2212418	7	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	AACTTTAGTTGTTAGGGGCTCTTATGCA	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP040560.1_2207139_2207370_-,NA|364aa|up_0|NZ_CP040560.1_2211158_2212250_+,NA|35aa|down_0|NZ_CP040560.1_2212749_2212854_-,NA|31aa|down_2|NZ_CP040560.1_2214965_2215058_+	NA|237aa|up_9|NZ_CP040560.1_2202749_2203460_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP040560.1_2203580_2204024_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP040560.1_2204223_2204637_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP040560.1_2205094_2206468_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP040560.1_2207139_2207370_-	NA	NA|313aa|up_4|NZ_CP040560.1_2207400_2208339_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP040560.1_2208773_2209439_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP040560.1_2209590_2209911_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP040560.1_2209912_2210893_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP040560.1_2211158_2212250_+	NA	NA|35aa|down_0|NZ_CP040560.1_2212749_2212854_-	NA	NA|379aa|down_1|NZ_CP040560.1_2213540_2214677_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP040560.1_2214965_2215058_+	NA	NA|286aa|down_3|NZ_CP040560.1_2215762_2216620_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP040560.1_2216687_2217470_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP040560.1_2217701_2219507_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP040560.1_2220187_2221726_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP040560.1_2221760_2223893_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP040560.1_2223904_2224339_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP040560.1_2224338_2225445_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_005885975.1_ASM588597v1	NZ_CP040560	Staphylococcus aureus strain Col52-A5 chromosome, complete genome	10	2336186-2336379	3	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	12	2336209-2336241|2336209-2336241|2336209-2336241|2336209-2336241|2336209-2336241|2336265-2336300|2336265-2336300|2336265-2336300|2336324-2336356|2336324-2336356|2336324-2336356|2336324-2336356	NZ_CP040560.1_804093-804125|NZ_CP040560.1_1439785-1439817|NZ_CP040560.1_1977543-1977575|NZ_CP040560.1_2611396-2611428|NZ_CP040560.1_1350541-1350509|NZ_CP040560.1_1844454-1844419|NZ_CP040560.1_1665865-1665900|NZ_CP040560.1_1988346-1988381|NZ_CP040560.1_804093-804125|NZ_CP040560.1_1977543-1977575|NZ_CP040560.1_2611396-2611428|NZ_CP040560.1_1350541-1350509	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP040560.1_2326713_2326878_+,NA|106aa|up_8|NZ_CP040560.1_2327122_2327440_+,NA|84aa|up_5|NZ_CP040560.1_2332564_2332816_+,NA|57aa|up_0|NZ_CP040560.1_2335955_2336126_+,NA	NA|55aa|up_9|NZ_CP040560.1_2326713_2326878_+	NA	NA|106aa|up_8|NZ_CP040560.1_2327122_2327440_+	NA	NA|1056aa|up_7|NZ_CP040560.1_2327626_2330794_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP040560.1_2330910_2332176_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP040560.1_2332564_2332816_+	NA	NA|255aa|up_4|NZ_CP040560.1_2332807_2333572_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP040560.1_2333733_2334174_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP040560.1_2334166_2335378_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP040560.1_2335479_2335830_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP040560.1_2335955_2336126_+	NA	NA|341aa|down_0|NZ_CP040560.1_2336520_2337543_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP040560.1_2337562_2338162_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP040560.1_2338168_2338402_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP040560.1_2338407_2338854_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP040560.1_2338867_2339353_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP040560.1_2339349_2340609_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP040560.1_2340671_2341166_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP040560.1_2341167_2341674_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP040560.1_2341704_2342709_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP040560.1_2342878_2343484_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
