assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005886035.1_ASM588603v1	NZ_CP040390	Escherichia coli strain A1_136 chromosome, complete genome	1	1124125-1124824	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no		RT,csa3,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,WYL	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	10,11,11	11	Orphan	RT,csa3,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,WYL	NA,NA	NA|919aa|up_9|NZ_CP040390.1_1110717_1113474_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|434aa|up_8|NZ_CP040390.1_1113530_1114832_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_7|NZ_CP040390.1_1114879_1117114_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_6|NZ_CP040390.1_1117191_1117440_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_5|NZ_CP040390.1_1117439_1117775_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_4|NZ_CP040390.1_1117846_1118638_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_3|NZ_CP040390.1_1118865_1120503_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_2|NZ_CP040390.1_1120590_1121889_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_1|NZ_CP040390.1_1121948_1122821_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|224aa|up_0|NZ_CP040390.1_1123114_1123786_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP040390.1_1125461_1126940_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP040390.1_1126966_1128244_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP040390.1_1128562_1129348_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP040390.1_1129417_1130872_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP040390.1_1130965_1132303_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP040390.1_1132280_1133060_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP040390.1_1133056_1133917_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|450aa|down_7|NZ_CP040390.1_1134016_1135365_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|192aa|down_8|NZ_CP040390.1_1135499_1136075_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_9|NZ_CP040390.1_1136091_1136352_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]
GCF_005886035.1_ASM588603v1	NZ_CP040390	Escherichia coli strain A1_136 chromosome, complete genome	2	1179902-1180418	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas2	RT,csa3,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,WYL	Unclear	GTGTTCCCCGCGTCAGCGGGGATAAACCG,CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGNCGCGGGGAACAC	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Unclear	RT,csa3,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,WYL	NA,NA|64aa|down_5|NZ_CP040390.1_1185700_1185892_-,NA|82aa|down_6|NZ_CP040390.1_1185897_1186143_+	NA|254aa|up_9|NZ_CP040390.1_1171714_1172476_-	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|350aa|up_8|NZ_CP040390.1_1172456_1173506_-	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|160aa|up_7|NZ_CP040390.1_1173502_1173982_-	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|237aa|up_6|NZ_CP040390.1_1173981_1174692_-	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|104aa|up_5|NZ_CP040390.1_1174710_1175022_-	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|108aa|up_4|NZ_CP040390.1_1175215_1175539_-	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|202aa|up_3|NZ_CP040390.1_1175588_1176194_-	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|476aa|up_2|NZ_CP040390.1_1176193_1177621_-	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|303aa|up_1|NZ_CP040390.1_1177622_1178531_-	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|346aa|up_0|NZ_CP040390.1_1178782_1179820_+	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	cas2|98aa|down_0|NZ_CP040390.1_1180514_1180808_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|235aa|down_1|NZ_CP040390.1_1180930_1181635_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|307aa|down_2|NZ_CP040390.1_1181668_1182589_-	pfam01609, DDE_Tnp_1, Transposase DDE domain	NA|287aa|down_3|NZ_CP040390.1_1183803_1184664_+	pfam02522, Antibiotic_NAT, Aminoglycoside 3-N-acetyltransferase	NA|181aa|down_4|NZ_CP040390.1_1184676_1185219_+	pfam13238, AAA_18, AAA domain	NA|64aa|down_5|NZ_CP040390.1_1185700_1185892_-	NA	NA|82aa|down_6|NZ_CP040390.1_1185897_1186143_+	NA	NA|376aa|down_7|NZ_CP040390.1_1186193_1187321_+	pfam13020, DUF3883, Domain of unknown function (DUF3883)	NA|235aa|down_8|NZ_CP040390.1_1187357_1188062_+	COG3316, COG3316, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|302aa|down_9|NZ_CP040390.1_1188183_1189089_+	cd05152, MPH2', Macrolide 2'-Phosphotransferase
GCF_005886035.1_ASM588603v1	NZ_CP040390	Escherichia coli strain A1_136 chromosome, complete genome	3	1609448-1609536	3	CRISPRCasFinder	no		RT,csa3,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,WYL	Orphan	GGTTGTCCAACGGTTGTCCAACG	23	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,WYL	NA|103aa|up_8|NZ_CP040390.1_1604483_1604792_-,NA|157aa|up_4|NZ_CP040390.1_1606281_1606752_-,NA|69aa|down_1|NZ_CP040390.1_1611455_1611662_+,NA|113aa|down_2|NZ_CP040390.1_1611770_1612109_+,NA|71aa|down_7|NZ_CP040390.1_1613219_1613432_+	NA|304aa|up_9|NZ_CP040390.1_1603575_1604487_-	pfam03837, RecT, RecT family	NA|103aa|up_8|NZ_CP040390.1_1604483_1604792_-	NA	NA|51aa|up_7|NZ_CP040390.1_1604876_1605029_-	pfam06301, Lambda_Kil, Bacteriophage lambda Kil protein	NA|44aa|up_6|NZ_CP040390.1_1605013_1605145_-	pfam02061, Lambda_CIII, Lambda Phage CIII	NA|323aa|up_5|NZ_CP040390.1_1605169_1606138_-	PTZ00121, PTZ00121, MAEBL; Provisional	NA|157aa|up_4|NZ_CP040390.1_1606281_1606752_-	NA	NA|126aa|up_3|NZ_CP040390.1_1606760_1607138_-	pfam11438, N36, 36-mer N-terminal peptide of the N protein (N36)	NA|232aa|up_2|NZ_CP040390.1_1607483_1608179_-	COG1974, LexA, SOS-response transcriptional repressors (RecA-mediated autopeptidases) [Transcription / Signal transduction mechanisms]	NA|72aa|up_1|NZ_CP040390.1_1608254_1608470_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|98aa|up_0|NZ_CP040390.1_1608589_1608883_+	pfam05269, Phage_CII, Bacteriophage CII protein	NA|479aa|down_0|NZ_CP040390.1_1609943_1611380_+	TIGR03600, phage_DnaB, phage replicative helicase, DnaB family, HK022 subfamily	NA|69aa|down_1|NZ_CP040390.1_1611455_1611662_+	NA	NA|113aa|down_2|NZ_CP040390.1_1611770_1612109_+	NA	NA|137aa|down_3|NZ_CP040390.1_1612111_1612522_+	pfam05772, NinB, NinB protein	NA|59aa|down_4|NZ_CP040390.1_1612518_1612695_+	pfam05322, NinE, NINE Protein	NA|118aa|down_5|NZ_CP040390.1_1612697_1613051_+	pfam10765, DUF2591, Protein of unknown function (DUF2591)	NA|59aa|down_6|NZ_CP040390.1_1613050_1613227_+	pfam05810, NinF, NinF protein	NA|71aa|down_7|NZ_CP040390.1_1613219_1613432_+	NA	NA|97aa|down_8|NZ_CP040390.1_1613424_1613715_+	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|121aa|down_9|NZ_CP040390.1_1613711_1614074_+	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed
GCF_005886035.1_ASM588603v1	NZ_CP040390	Escherichia coli strain A1_136 chromosome, complete genome	4	3634073-3634214	4	CRISPRCasFinder	no		RT,csa3,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,WYL	Orphan	GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	47	0	0	NA	NA	NA	1	1	Orphan	RT,csa3,cas3,PD-DExK,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,cas14j,DinG,c2c9_V-U4,WYL	NA|36aa|up_4|NZ_CP040390.1_3630295_3630403_-,NA|64aa|down_4|NZ_CP040390.1_3640636_3640828_-	NA|354aa|up_9|NZ_CP040390.1_3623536_3624598_-	pfam00419, Fimbrial, Fimbrial protein	NA|244aa|up_8|NZ_CP040390.1_3624594_3625326_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|817aa|up_7|NZ_CP040390.1_3625340_3627791_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|189aa|up_6|NZ_CP040390.1_3627850_3628417_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|428aa|up_5|NZ_CP040390.1_3628806_3630090_-	PRK05614, gltA, citrate synthase	NA|36aa|up_4|NZ_CP040390.1_3630295_3630403_-	NA	NA|130aa|up_3|NZ_CP040390.1_3630798_3631188_+	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit	NA|116aa|up_2|NZ_CP040390.1_3631181_3631529_+	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit	NA|589aa|up_1|NZ_CP040390.1_3631528_3633295_+	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed	NA|239aa|up_0|NZ_CP040390.1_3633310_3634027_+	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed	NA|934aa|down_0|NZ_CP040390.1_3634376_3637178_+	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|406aa|down_1|NZ_CP040390.1_3637192_3638410_+	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|389aa|down_2|NZ_CP040390.1_3638503_3639670_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|290aa|down_3|NZ_CP040390.1_3639669_3640539_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|64aa|down_4|NZ_CP040390.1_3640636_3640828_-	NA	NA|49aa|down_5|NZ_CP040390.1_3640787_3640934_+	COG2986, HutH, Histidine ammonia-lyase [Amino acid transport and metabolism]	NA|302aa|down_6|NZ_CP040390.1_3641204_3642110_+	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional	NA|201aa|down_7|NZ_CP040390.1_3642143_3642746_-	PRK05986, PRK05986, cob(I)yrinic acid a,c-diamide adenosyltransferase	NA|551aa|down_8|NZ_CP040390.1_3642755_3644408_-	PRK15392, PRK15392, class I fumarate hydratase	NA|427aa|down_9|NZ_CP040390.1_3644515_3645796_-	COG1301, GltP, Na+/H+-dicarboxylate symporters [Energy production and conversion]
