The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	42923	58796	2912202	transposase	Streptococcus_phage(83.33%)	16	NA	NA
WP_130587603.1|42923_44180_+	ATP-dependent helicase	NA	A7KV33	Bacillus_phage	28.4	9.1e-17
WP_002301399.1|44166_45126_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_000421279.1|45981_46296_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_001234191.1|46316_46694_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000185761.1|46703_47477_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001130244.1|47498_48902_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	2.2e-176
WP_000426689.1|49083_50268_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
WP_000055376.1|50264_50555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001009054.1|50551_50773_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000675717.1|50814_51594_+	abortive infection family protein	NA	NA	NA	NA	NA
WP_000425404.1|51654_52155_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.0	1.7e-54
WP_000248477.1|52210_52849_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000723887.1|52920_53316_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
WP_000331165.1|53299_55753_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	78.9	0.0e+00
WP_000192393.1|55749_57777_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.3	5.1e-195
WP_000768373.1|57773_58796_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	75.5	2.4e-132
>prophage 2
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	63424	70752	2912202	integrase	Streptococcus_phage(57.14%)	9	59790:59803	74130:74143
59790:59803	attL	TTGATAAAAAATTG	NA	NA	NA	NA
WP_000868795.1|63424_63922_-	trimethoprim-resistant dihydrofolate reductase DfrG	NA	G3MBI7	Bacillus_virus	49.1	4.0e-40
WP_001803271.1|65442_65610_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	62.0	2.3e-13
WP_001227350.1|65667_66021_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_010924747.1|66252_66363_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000675479.1|66491_66974_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	8.5e-48
WP_000845143.1|66970_67201_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_000633907.1|67698_67899_+	DUF3173 family protein	NA	NA	NA	NA	NA
WP_000237797.1|67925_69119_+|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_002298578.1|69186_70752_-	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	30.6	3.5e-18
74130:74143	attR	CAATTTTTTATCAA	NA	NA	NA	NA
>prophage 3
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	276700	295720	2912202		Streptococcus_phage(85.71%)	17	NA	NA
WP_002290101.1|276700_277990_-	PDZ domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	30.2	5.7e-22
WP_002345011.1|278417_278897_+	23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH	NA	NA	NA	NA	NA
WP_001825268.1|279107_279227_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000420682.1|279249_279564_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	100.0	5.2e-54
WP_000985015.1|279579_279966_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	100.0	3.0e-64
WP_000813488.1|279994_281380_+	DNA translocase FtsK	NA	A0A1S5SFB5	Streptococcus_phage	100.0	1.1e-265
WP_000398284.1|281558_282764_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	100.0	2.8e-233
WP_138556884.1|283572_285459_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	7.0e-37
WP_032509114.1|285562_285787_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	97.1	8.5e-27
WP_002345010.1|285903_286401_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	97.6	1.3e-88
WP_002345009.1|286487_286880_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	99.2	4.6e-68
WP_050288986.1|286863_289311_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	98.3	0.0e+00
WP_002345008.1|289313_291497_+	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	82.3	2.9e-305
WP_002345007.1|291493_292495_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	95.5	1.3e-183
WP_074400123.1|292491_293424_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	91.6	5.1e-158
WP_012386611.1|293698_293785_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_002345005.1|293800_295720_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	96.6	0.0e+00
>prophage 4
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	768762	777234	2912202		Streptococcus_phage(66.67%)	9	NA	NA
WP_002294039.1|768762_769407_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292340.1|769421_769751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288071.1|769764_770703_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002288073.1|770738_771563_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288076.1|771555_771903_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288078.1|771971_772844_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002294035.1|772952_774074_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288081.1|774127_774730_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002288083.1|775044_777234_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
>prophage 5
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	796318	870024	2912202	integrase,tRNA,capsid,plate,portal,tail,terminase,holin,protease,head	uncultured_Caudovirales_phage(21.88%)	88	796935:796970	833917:833952
WP_002289451.1|796318_796663_+|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_002289452.1|796675_796969_+	50S ribosomal protein L27	NA	NA	NA	NA	NA
796935:796970	attL	AAGTGTCTGTTTATCCAGTAGCTCAAGAAGCTTAAT	NA	NA	NA	NA
WP_002301539.1|797061_798210_-|integrase	site-specific integrase	integrase	A0A1S5S7K9	Streptococcus_phage	40.1	3.0e-67
WP_002305409.1|798221_798533_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321996.1|798585_798981_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002305405.1|799016_799361_-	helix-turn-helix transcriptional regulator	NA	A0A126GGL0	Streptococcus_phage	52.6	1.2e-24
WP_002301534.1|799731_799953_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305403.1|800009_800786_+	hypothetical protein	NA	B2ZYU5	Staphylococcus_phage	54.8	2.8e-72
WP_002305401.1|800782_800977_+	helix-turn-helix transcriptional regulator	NA	D2IZW2	Enterococcus_phage	50.9	1.2e-08
WP_002349273.1|800978_801263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305400.1|801283_801472_+	hypothetical protein	NA	D2IZW5	Enterococcus_phage	60.3	7.4e-08
WP_002305399.1|801797_802037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305398.1|802042_802729_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	71.4	2.6e-90
WP_002305397.1|802731_803562_+	replication protein	NA	C9E2N2	Enterococcus_phage	43.9	1.5e-52
WP_002305396.1|803578_804430_+	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	28.7	6.2e-25
WP_002305394.1|804426_804786_+	DUF1064 domain-containing protein	NA	A0A1P8BKR1	Lactococcus_phage	48.3	3.1e-18
WP_002290675.1|804800_804962_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305393.1|804958_805264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286550.1|805263_805620_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	3.1e-10
WP_002296604.1|805579_805825_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010730549.1|806009_806477_+	ArpU family phage transcriptional regulator	NA	D7RWH7	Brochothrix_phage	29.1	1.9e-07
WP_010725700.1|807249_807555_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130587586.1|807535_807922_+	hypothetical protein	NA	A0A1B1P7N8	Bacillus_phage	33.3	1.8e-08
WP_002304435.1|807918_808299_+	HNH endonuclease	NA	A0A1B1P7N1	Bacillus_phage	64.0	4.7e-41
WP_002301332.1|808409_808862_+	hypothetical protein	NA	A0A2H4JFK0	uncultured_Caudovirales_phage	68.5	8.0e-48
WP_069314727.1|808858_810586_+|terminase	terminase large subunit	terminase	A0A2H4JDG5	uncultured_Caudovirales_phage	73.3	7.6e-264
WP_099745849.1|810607_811837_+|portal	phage portal protein	portal	A0A2H4J9C7	uncultured_Caudovirales_phage	65.5	2.7e-146
WP_084201523.1|811802_812378_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1B2APW1	Phage_Wrath	68.4	1.1e-65
WP_130587585.1|812390_813755_+|capsid	phage major capsid protein	capsid	A0A1B2APY9	Phage_Wrath	69.1	6.4e-125
WP_002301326.1|813756_814035_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1C8E967	Bacillus_phage	62.7	3.5e-22
WP_130587584.1|814015_814342_+|head	phage head closure protein	head	A0A0N7IRA3	Lactobacillus_phage	54.4	3.4e-24
WP_002353261.1|814331_814670_+	hypothetical protein	NA	A0A1B1P7P2	Bacillus_phage	46.8	6.6e-23
WP_130587583.1|814659_815025_+	HK97 gp10 family phage protein	NA	A0A2H4JDG0	uncultured_Caudovirales_phage	40.3	2.9e-16
WP_130587582.1|815031_815658_+|tail	phage tail protein	tail	A0A2H4JGN2	uncultured_Caudovirales_phage	34.5	4.4e-28
WP_010725762.1|815657_816122_+	hypothetical protein	NA	A0A2H4J956	uncultured_Caudovirales_phage	38.1	4.1e-15
WP_130587581.1|816316_818626_+|tail	phage tail tape measure protein	tail	Q8W5Z7	Listeria_phage	49.0	1.2e-83
WP_002349218.1|818637_819342_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_130587580.1|819338_822098_+	CHAP domain-containing protein	NA	D7RWE0	Brochothrix_phage	37.1	3.1e-49
WP_002350776.1|822110_823019_+|plate	phage baseplate upper protein	plate	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
WP_002301866.1|823018_823636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350775.1|823639_824089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002342973.1|824088_824613_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002350774.1|824640_825048_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002298029.1|825047_825185_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002286686.1|825222_825516_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286683.1|825512_825737_+|holin	holin	holin	NA	NA	NA	NA
WP_138556890.1|825733_826744_+	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC6	Lactobacillus_phage	48.6	2.7e-59
WP_002286474.1|831315_831723_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296902.1|831736_832138_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286473.1|832139_832511_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305364.1|832546_832849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305361.1|832944_833739_-	DUF4428 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	32.9	4.3e-12
WP_002289453.1|834357_837192_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
833917:833952	attR	AAGTGTCTGTTTATCCAGTAGCTCAAGAAGCTTAAT	NA	NA	NA	NA
WP_002289455.1|837382_837874_+	PTS transporter subunit IIB	NA	NA	NA	NA	NA
WP_002289456.1|837976_838966_+	PTS mannose transporter subunit IIAB	NA	NA	NA	NA	NA
WP_002294546.1|838998_839802_+	PTS mannose/fructose/sorbose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002286670.1|839822_840737_+	PTS mannose/fructose/sorbose transporter family subunit IID	NA	NA	NA	NA	NA
WP_002286668.1|840819_841194_+	DUF956 family protein	NA	NA	NA	NA	NA
WP_002286666.1|841332_841578_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002286665.1|841749_842814_+	aminopeptidase P family protein	NA	NA	NA	NA	NA
WP_002286664.1|843059_843485_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002286662.1|843477_843927_+	transcription antitermination factor NusB	NA	NA	NA	NA	NA
WP_002286660.1|844023_844878_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	NA	A0A249XZQ2	Enterococcus_phage	38.7	6.8e-40
WP_002286658.1|844878_846216_+	exodeoxyribonuclease VII large subunit	NA	L7RDW5	Acanthamoeba_polyphaga_moumouvirus	29.5	6.7e-26
WP_002286657.1|846220_846445_+	exodeoxyribonuclease VII small subunit	NA	NA	NA	NA	NA
WP_002286656.1|846446_847337_+	polyprenyl synthetase family protein	NA	NA	NA	NA	NA
WP_002286655.1|847345_848164_+	TlyA family RNA methyltransferase	NA	NA	NA	NA	NA
WP_002286653.1|848270_848720_+	arginine repressor	NA	NA	NA	NA	NA
WP_002286651.1|848737_850420_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_002291876.1|850474_850591_-	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
WP_002286649.1|850663_851620_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002286647.1|851790_852159_+	DUF3397 domain-containing protein	NA	NA	NA	NA	NA
WP_002286645.1|852328_852760_+	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_002286642.1|852780_853740_+	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_002294542.1|853744_854146_+	cell division protein FtsL	NA	NA	NA	NA	NA
WP_002296622.1|854146_856339_+	penicillin-binding protein	NA	NA	NA	NA	NA
WP_002286639.1|856364_857327_+	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_002286638.1|857340_858702_+	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_002286637.1|858727_859816_+	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_002286633.1|859830_861051_+	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_002286631.1|861206_862532_+	cell division protein FtsA	NA	NA	NA	NA	NA
WP_002286629.1|862554_863796_+	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_002286628.1|863812_864490_+	YggS family pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_002286627.1|864503_865103_+	cell division protein SepF	NA	NA	NA	NA	NA
WP_073120020.1|865117_865405_+	YggT family protein	NA	NA	NA	NA	NA
WP_002286624.1|865453_866236_+	RNA-binding protein	NA	NA	NA	NA	NA
WP_002286622.1|866256_866964_+	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_002286621.1|867225_870024_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	1.6e-74
>prophage 6
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	883886	910490	2912202	integrase,capsid,portal,terminase,transposase,protease,head	Bacillus_phage(32.0%)	46	876899:876914	890651:890666
876899:876914	attL	TATCGATATCGAAAAA	NA	NA	NA	NA
WP_002286587.1|883886_885026_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.6e-95
WP_002296617.1|885324_885960_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296616.1|886072_886708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303013.1|886741_887203_-	DUF4429 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	34.8	4.5e-06
WP_002348715.1|887332_887764_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002296612.1|887781_888102_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	40.2	2.0e-13
WP_074394507.1|888537_888723_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077495106.1|888653_888842_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286679.1|888838_889096_+	phosphomannomutase	NA	NA	NA	NA	NA
WP_002286674.1|889066_889375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_085803886.1|889452_890226_+	phage antirepressor	NA	A0A1Q1PVU2	Staphylococcus_phage	52.2	4.1e-68
WP_002296611.1|890240_890444_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_047927434.1|890459_890780_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
890651:890666	attR	TATCGATATCGAAAAA	NA	NA	NA	NA
WP_002351655.1|890961_891744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130587561.1|891794_892502_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	42.0	4.3e-40
WP_060809376.1|892679_893021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286557.1|893013_893685_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_002286553.1|893690_894377_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
WP_002286552.1|894379_895129_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_002286696.1|895140_895410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286695.1|895571_895874_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296606.1|895870_896032_+	antitoxin	NA	NA	NA	NA	NA
WP_002286694.1|896028_896334_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286550.1|896333_896690_+	DUF1140 family protein	NA	A0A2H4JAZ4	uncultured_Caudovirales_phage	37.4	3.1e-10
WP_002296604.1|896649_896895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286547.1|896891_897311_+	hypothetical protein	NA	D2IZL0	Enterococcus_phage	54.3	4.1e-30
WP_002286545.1|897307_897865_+	DUF1642 domain-containing protein	NA	A0A0C5KKV2	Enterococcus_phage	36.2	2.8e-10
WP_002286693.1|897861_898158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286542.1|898234_898648_+	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
WP_002300143.1|899105_899381_-	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	45.7	9.9e-17
WP_002311723.1|899834_900041_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138556892.1|900408_901508_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.7	3.6e-78
WP_002296600.1|901626_901794_+	thymidylate synthase	NA	NA	NA	NA	NA
WP_002286540.1|901819_902164_+	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	57.1	3.8e-26
WP_002296599.1|902168_902450_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286538.1|902552_902867_+|terminase	terminase	terminase	A0A1S7FYW6	Listeria_phage	37.9	3.3e-08
WP_002286533.1|902844_904539_+|terminase	terminase large subunit	terminase	A0A1B1P766	Bacillus_phage	49.6	3.0e-148
WP_002286530.1|904558_905737_+|portal	phage portal protein	portal	A0A1B1P754	Bacillus_phage	40.4	5.4e-80
WP_002286527.1|905699_906386_+|protease	Clp protease ClpP	protease	A0A2I6PDD0	Staphylococcus_phage	39.7	1.0e-30
WP_002286525.1|906385_907546_+|capsid	phage major capsid protein	capsid	A0A1B1P752	Bacillus_phage	50.1	1.8e-99
WP_002286524.1|907555_908431_+	hypothetical protein	NA	D2IYX3	Enterococcus_phage	74.2	5.6e-130
WP_002286523.1|908427_908739_+	hypothetical protein	NA	A0A1B1P751	Bacillus_phage	42.1	6.3e-12
WP_002286522.1|908728_909082_+|head	phage head closure protein	head	NA	NA	NA	NA
WP_002296598.1|909071_909473_+	hypothetical protein	NA	A0A1B1P759	Bacillus_phage	33.3	1.1e-13
WP_002286516.1|909465_909870_+	hypothetical protein	NA	R4IBU7	Listeria_phage	29.5	6.1e-07
WP_002286512.1|909881_910490_+	hypothetical protein	NA	Q8W5Z9	Listeria_phage	41.1	3.0e-34
>prophage 7
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	914559	980067	2912202	tRNA,tail,holin,transposase,protease	Enterococcus_phage(21.43%)	55	NA	NA
WP_002299176.1|914559_915297_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002299182.1|919898_920141_+|holin	holin	holin	D2J075	Enterococcus_phage	68.4	9.6e-24
WP_005876842.1|920156_920354_+|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	84.4	1.0e-23
WP_138556894.1|920364_921384_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	4.1e-60
WP_002317802.1|923736_924711_+	choloylglycine hydrolase family protein	NA	M1H001	Paramecium_bursaria_Chlorella_virus	29.7	6.6e-23
WP_002293915.1|925035_926931_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y2L7	Organic_Lake_phycodnavirus	26.2	6.0e-20
WP_002288531.1|927125_927572_-	DUF2188 domain-containing protein	NA	NA	NA	NA	NA
WP_002296119.1|927799_927949_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_002296121.1|928036_928555_+	dihydrofolate reductase	NA	G3MBI7	Bacillus_virus	39.1	7.1e-24
WP_002293906.1|928631_929588_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002325771.1|929753_930560_+	ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	32.1	1.3e-13
WP_002293904.1|930556_931546_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002319727.1|931542_932547_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_002289886.1|932678_933221_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA	NA
WP_002289885.1|933240_933939_+|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_002293902.1|933959_934172_+	YqgQ family protein	NA	NA	NA	NA	NA
WP_002293901.1|934171_935134_+	ROK family glucokinase	NA	NA	NA	NA	NA
WP_002293900.1|935151_935547_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_002288459.1|935709_936075_+	DUF488 family protein	NA	NA	NA	NA	NA
WP_002293899.1|936071_937883_+	FAD/NAD(P)-binding protein	NA	NA	NA	NA	NA
WP_002288457.1|937944_938112_-	DUF3042 family protein	NA	NA	NA	NA	NA
WP_002293897.1|938360_939350_+	UDP-glucose 4-epimerase GalE	NA	A0A1V0SG19	Hokovirus	36.8	1.6e-48
WP_002293895.1|939361_940846_+	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_002293893.1|940869_941850_+	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	28.9	5.8e-19
WP_002302614.1|941938_942763_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_002293890.1|942746_943289_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002293888.1|943295_943760_+	ribosomal protein S18-alanine N-acetyltransferase	NA	NA	NA	NA	NA
WP_002293887.1|943756_944773_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	41.4	5.4e-60
WP_002288442.1|945344_946046_-	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288439.1|946506_947736_+	arginine deiminase	NA	NA	NA	NA	NA
WP_002288437.1|947826_948846_+	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_002288434.1|948960_949908_+	carbamate kinase	NA	NA	NA	NA	NA
WP_002293885.1|950329_952021_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	32.8	9.9e-75
WP_002293884.1|952366_953152_-	phosphonoacetaldehyde hydrolase	NA	NA	NA	NA	NA
WP_002326249.1|953144_954236_-	2-aminoethylphosphonate--pyruvate transaminase	NA	NA	NA	NA	NA
WP_002293881.1|954452_954932_-	ArgR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002293880.1|955290_956073_+	30S ribosomal protein S2	NA	NA	NA	NA	NA
WP_002293878.1|956171_957053_+	elongation factor Ts	NA	NA	NA	NA	NA
WP_002293877.1|957188_957911_+	UMP kinase	NA	NA	NA	NA	NA
WP_002293875.1|957913_958471_+	ribosome recycling factor	NA	NA	NA	NA	NA
WP_002294134.1|960055_960868_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	46.8	2.0e-25
WP_002294135.1|960864_961665_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_002294136.1|961825_963094_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_002347409.1|963161_964871_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002294138.1|965082_969435_+	PolC-type DNA polymerase III	NA	A0A0K2SUJ2	Clostridium_phage	41.4	3.9e-22
WP_002288499.1|969578_970052_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_002288500.1|970075_971251_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_002288501.1|971272_971566_+	YlxR family protein	NA	NA	NA	NA	NA
WP_002288509.1|971562_971874_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_002294141.1|971886_974193_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	23.7	3.6e-19
WP_002294142.1|974219_974567_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_002294143.1|974674_974896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294145.1|975343_977707_+	phosphoketolase family protein	NA	NA	NA	NA	NA
WP_002347402.1|977762_978716_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294474.1|979143_980067_+|tRNA	tRNA pseudouridine(55) synthase TruB	tRNA	NA	NA	NA	NA
>prophage 8
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	1062657	1124207	2912202	integrase,transposase,tRNA	Streptococcus_phage(23.08%)	56	1057008:1057024	1127000:1127016
1057008:1057024	attL	TTCTCTTTTTGATATAT	NA	NA	NA	NA
WP_000222572.1|1062657_1063611_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002289144.1|1064103_1065126_+	3-deoxy-7-phosphoheptulonate synthase	NA	NA	NA	NA	NA
WP_002289143.1|1065158_1066223_+	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_002289142.1|1066224_1067391_+	chorismate synthase	NA	A0A291AU41	Pandoravirus	35.3	1.6e-39
WP_002289140.1|1067407_1068499_+	prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_002289139.1|1068511_1069807_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_002289138.1|1069799_1070309_+	shikimate kinase	NA	NA	NA	NA	NA
WP_002289137.1|1070305_1071142_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_002289136.1|1071204_1072941_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	30.6	5.0e-21
WP_002289135.1|1072937_1073867_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002289134.1|1073866_1074445_-	response regulator	NA	NA	NA	NA	NA
WP_002289133.1|1074717_1076004_+	carbohydrate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002289132.1|1076140_1077010_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002289130.1|1077006_1077894_+	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002296409.1|1078060_1078744_+	DUF1538 domain-containing protein	NA	NA	NA	NA	NA
WP_002296408.1|1078740_1079514_+	DUF1538 domain-containing protein	NA	NA	NA	NA	NA
WP_002295200.1|1079510_1079909_+	P-II family nitrogen regulator	NA	NA	NA	NA	NA
WP_002287522.1|1080229_1080634_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287525.1|1080650_1081799_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002295199.1|1081984_1082656_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002322028.1|1082714_1083155_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295197.1|1083166_1083835_+	2,3-bisphosphoglycerate-dependent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_002295196.1|1083898_1084522_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_002291995.1|1084577_1084964_+	DUF1149 family protein	NA	NA	NA	NA	NA
WP_002295194.1|1085176_1086568_+	L-cystine transporter	NA	NA	NA	NA	NA
WP_002297404.1|1087303_1088554_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002296407.1|1088961_1089330_+	lactoylglutathione lyase	NA	NA	NA	NA	NA
WP_002296405.1|1089509_1090451_+	rhodanese-related sulfurtransferase	NA	NA	NA	NA	NA
WP_002296404.1|1090519_1091251_+	serine/threonine protein phosphatase	NA	A7KV25	Bacillus_phage	30.8	1.7e-15
WP_002296403.1|1091394_1093575_+	RNA-binding transcriptional accessory protein	NA	NA	NA	NA	NA
WP_002296402.1|1093594_1094077_+	SprT family protein	NA	NA	NA	NA	NA
WP_002296401.1|1094092_1094854_+	YdcF family protein	NA	NA	NA	NA	NA
WP_002296400.1|1094984_1096319_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_002296398.1|1096625_1097111_+	dehydratase	NA	NA	NA	NA	NA
WP_002296397.1|1097103_1097787_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_130587590.1|1097912_1100558_+	DNA polymerase I	NA	F8WQ35	Bacillus_phage	35.7	3.0e-54
WP_002288323.1|1100602_1101439_+	DNA-formamidopyrimidine glycosylase	NA	A0A127AWE5	Bacillus_phage	30.2	1.8e-24
WP_002288324.1|1101402_1102032_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_002288325.1|1102083_1102416_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288327.1|1102727_1103219_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_002288329.1|1103241_1104615_+	Replication initiation and membrane attachment	NA	NA	NA	NA	NA
WP_002288331.1|1104614_1105541_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	41.3	5.1e-33
WP_002288333.1|1105669_1106110_+	lipoprotein	NA	NA	NA	NA	NA
WP_002288335.1|1107778_1108480_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_002288338.1|1108476_1109598_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_002288340.1|1109612_1110845_+	peptidase T	NA	NA	NA	NA	NA
WP_002288343.1|1110976_1111885_+	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
WP_002288344.1|1111919_1112192_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_002288347.1|1112202_1113249_+	flippase-like domain-containing protein	NA	NA	NA	NA	NA
WP_002288348.1|1113499_1116109_+	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	35.0	1.6e-132
WP_002288350.1|1116259_1116931_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288352.1|1116923_1117418_-	nucleoside deoxyribosyltransferase	NA	A0A1W6JK28	Lactococcus_phage	56.5	7.2e-42
WP_002288353.1|1117437_1118658_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002288355.1|1118804_1120640_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.4	3.4e-20
WP_002288357.1|1120733_1121861_-|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.5	1.8e-109
WP_000997695.1|1123028_1124207_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
1127000:1127016	attR	ATATATCAAAAAGAGAA	NA	NA	NA	NA
>prophage 9
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	1781980	1817928	2912202	integrase,tail,holin,transposase,head	Escherichia_phage(30.0%)	29	1770658:1770672	1802236:1802250
1770658:1770672	attL	ATAAGACATTGATTT	NA	NA	NA	NA
WP_010782578.1|1781980_1783255_+|transposase	ISL3-like element IS1476 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.1	8.6e-55
WP_002371302.1|1784914_1786195_-	EpaQ family protein	NA	NA	NA	NA	NA
WP_002348826.1|1786238_1788272_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286428.1|1788305_1789157_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.0	1.7e-38
WP_002294532.1|1789254_1790283_-	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	42.9	6.4e-69
WP_002286442.1|1790304_1790877_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.2	8.3e-42
WP_002286449.1|1790890_1791757_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	62.5	3.7e-102
WP_002321540.1|1791856_1792591_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002286453.1|1792568_1793396_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_002286455.1|1793395_1794196_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_002286457.1|1794188_1795328_-	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_002286461.1|1795403_1796327_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_002294533.1|1796358_1797123_-	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_002297963.1|1797280_1797721_+	flavodoxin	NA	NA	NA	NA	NA
WP_002286467.1|1797898_1798468_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002348827.1|1798724_1799957_+	aminopeptidase	NA	NA	NA	NA	NA
WP_076005172.1|1800261_1800462_+|integrase	tyrosine-type recombinase/integrase	integrase	Q9AZR0	Lactococcus_phage	75.7	4.6e-08
WP_002286680.1|1800710_1801013_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286473.1|1801048_1801420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296902.1|1801421_1801823_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286474.1|1801836_1802244_-	hypothetical protein	NA	NA	NA	NA	NA
WP_005876842.1|1806301_1806499_-|holin	holin	holin	A0A0S2MYF6	Enterococcus_phage	84.4	1.0e-23
1802236:1802250	attR	ATAAGACATTGATTT	NA	NA	NA	NA
WP_002299182.1|1806514_1806757_-|holin	holin	holin	D2J075	Enterococcus_phage	68.4	9.6e-24
WP_060806750.1|1809057_1811349_-	hypothetical protein	NA	A0A1D3SNL1	Enterococcus_phage	29.9	7.3e-89
WP_002299176.1|1811358_1812096_-|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002305377.1|1815595_1815778_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138556898.1|1815802_1816144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286512.1|1816164_1816773_-	hypothetical protein	NA	Q8W5Z9	Listeria_phage	41.1	3.0e-34
WP_002286522.1|1817574_1817928_-|head	phage head closure protein	head	NA	NA	NA	NA
>prophage 10
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	1824491	1839545	2912202	integrase,transposase	Enterococcus_phage(57.14%)	27	1818387:1818401	1840506:1840520
1818387:1818401	attL	CTTCTTTAACTTTTT	NA	NA	NA	NA
WP_002286540.1|1824491_1824836_-	HNH endonuclease	NA	A0A1B1P757	Bacillus_phage	57.1	3.8e-26
WP_002296600.1|1824861_1825029_-	thymidylate synthase	NA	NA	NA	NA	NA
WP_138556900.1|1825104_1826247_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.7	3.8e-78
WP_002311723.1|1826613_1826820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300143.1|1827273_1827549_+	hypothetical protein	NA	A0A2H4JEH2	uncultured_Caudovirales_phage	45.7	9.9e-17
WP_002286542.1|1828006_1828420_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	1.5e-56
WP_002286693.1|1828496_1828793_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286545.1|1828789_1829347_-	DUF1642 domain-containing protein	NA	A0A0C5KKV2	Enterococcus_phage	36.2	2.8e-10
WP_002286547.1|1829343_1829763_-	hypothetical protein	NA	D2IZL0	Enterococcus_phage	54.3	4.1e-30
WP_002296604.1|1829759_1830005_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138556902.1|1830321_1830621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_129977445.1|1830782_1831052_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130587605.1|1831063_1831891_-	replisome organizer	NA	A0A0S2MYA8	Enterococcus_phage	54.9	3.9e-40
WP_002330650.1|1831893_1832121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_101699732.1|1832123_1832810_-	hypothetical protein	NA	C9E2N1	Enterococcus_phage	70.9	7.5e-90
WP_002286557.1|1832815_1833487_-	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_002286559.1|1833479_1833821_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286562.1|1833998_1834697_-	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.7e-25
WP_002286568.1|1834783_1835254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_069314713.1|1835296_1835476_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002342110.1|1835488_1835755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_084196700.1|1835765_1835957_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311730.1|1836250_1836589_+	helix-turn-helix transcriptional regulator	NA	A0A126GGQ7	Streptococcus_phage	46.6	1.7e-18
WP_010730563.1|1836600_1837014_+	ImmA/IrrE family metallo-endopeptidase	NA	D2IZV8	Enterococcus_phage	32.2	2.9e-12
WP_002342106.1|1837027_1837228_+	hypothetical protein	NA	A0A097BY73	Enterococcus_phage	86.4	7.1e-25
WP_002353428.1|1837314_1838202_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_033655447.1|1838339_1839545_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1S5S7K9	Streptococcus_phage	37.4	9.5e-64
1840506:1840520	attR	CTTCTTTAACTTTTT	NA	NA	NA	NA
>prophage 11
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	1903669	1965547	2912202	integrase,transposase,tRNA	Streptococcus_phage(35.0%)	51	1891592:1891608	1953057:1953073
1891592:1891608	attL	AAAATCATCTGCATAAT	NA	NA	NA	NA
WP_002297404.1|1903669_1904920_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002295273.1|1905205_1905463_+	hypothetical protein	NA	NA	NA	NA	NA
WP_008266934.1|1905694_1906108_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_138556887.1|1906385_1907727_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_002294831.1|1907798_1908491_-	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC6	Lactobacillus_phage	43.4	2.3e-30
WP_002294833.1|1908485_1908752_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	58.7	2.8e-08
WP_060806729.1|1908927_1909497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_049143547.1|1909570_1910860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304700.1|1911213_1912062_+	MoxR family ATPase	NA	NA	NA	NA	NA
WP_002374090.1|1912206_1913148_+	DUF58 domain-containing protein	NA	NA	NA	NA	NA
WP_002299539.1|1915420_1917592_-	copper/silver-translocating P-type ATPase CopB	NA	A0A218MNH6	uncultured_virus	32.3	5.0e-71
WP_002312937.1|1917611_1919798_-	copper-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	38.6	5.3e-121
WP_002289040.1|1919797_1920007_-	copper chaperone CopZ	NA	NA	NA	NA	NA
WP_002294855.1|1920019_1920460_-	CopY/TcrY family copper transport repressor	NA	NA	NA	NA	NA
WP_002304690.1|1920533_1921073_-	topology modulation protein	NA	A0A097BYE2	Leuconostoc_phage	34.5	3.8e-20
WP_130587575.1|1921687_1923154_-	amino acid permease	NA	NA	NA	NA	NA
WP_002304688.1|1923464_1925546_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.6	2.4e-115
WP_002288776.1|1926069_1926429_-	YccF domain-containing protein	NA	NA	NA	NA	NA
WP_002326717.1|1926458_1926800_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304684.1|1926796_1927471_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_002288767.1|1928523_1929822_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.3	1.2e-59
WP_002304682.1|1929861_1931052_-	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_002348809.1|1931072_1931600_-	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
WP_002304681.1|1931646_1934436_-	DEAD/DEAH box helicase family protein	NA	A0A1X9I5C8	Streptococcus_phage	30.9	1.1e-89
WP_002288762.1|1934582_1934783_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	74.2	2.5e-22
WP_002323868.1|1935234_1935555_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002297185.1|1935832_1937128_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	3.8e-10
WP_002288760.1|1937579_1938698_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304680.1|1939168_1940476_+	D-alanyl-D-alanine carboxypeptidase	NA	NA	NA	NA	NA
WP_002340453.1|1940594_1941794_+	YdcF family protein	NA	NA	NA	NA	NA
WP_002289547.1|1941820_1943089_-	voltage-gated chloride channel family protein	NA	A0A1X9I5Z9	Streptococcus_phage	31.1	2.2e-42
WP_002304677.1|1943969_1944173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289559.1|1944305_1944809_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_002318140.1|1944931_1945696_-	RNA methyltransferase	NA	A0A2D1A6G0	Rhodococcus_phage	26.1	1.7e-05
WP_002289551.1|1945802_1946078_+	acylphosphatase	NA	NA	NA	NA	NA
WP_074400097.1|1946264_1946492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_060806769.1|1946793_1947747_+	membrane protein insertase YidC	NA	NA	NA	NA	NA
WP_002305671.1|1950589_1950748_-	PTS sugar transporter	NA	NA	NA	NA	NA
WP_002318149.1|1951052_1951247_-	hypothetical protein	NA	M1PSF2	Streptococcus_phage	74.0	5.0e-15
WP_002305669.1|1952190_1952544_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025477502.1|1952671_1953211_-	hypothetical protein	NA	NA	NA	NA	NA
1953057:1953073	attR	AAAATCATCTGCATAAT	NA	NA	NA	NA
WP_010723404.1|1953240_1953432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305667.1|1953473_1954340_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010723405.1|1954363_1956016_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	40.4	2.0e-104
WP_002318153.1|1956020_1956923_-	mannose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_010723406.1|1957006_1958320_-	cupin domain-containing protein	NA	A0A1V0SH58	Hokovirus	26.9	1.5e-38
WP_002318154.1|1958387_1959332_-	GDP-L-fucose synthase	NA	A0A1D8KU05	Synechococcus_phage	53.4	1.5e-93
WP_002323224.1|1959368_1960382_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305661.1|1960461_1961508_-	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	63.1	1.8e-122
WP_002312603.1|1962145_1963609_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.2	5.3e-125
WP_111996092.1|1964698_1965547_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
>prophage 12
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	2152709	2158382	2912202	capsid,portal,tail,terminase,head	uncultured_Caudovirales_phage(50.0%)	7	NA	NA
WP_002296483.1|2152709_2153045_-|head	phage head closure protein	head	V5UQC7	Enterococcus_phage	35.6	4.7e-13
WP_002296484.1|2153031_2153316_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_002296485.1|2153371_2154895_-|capsid	phage major capsid protein	capsid	A0A1W6JPR8	Staphylococcus_phage	37.4	1.4e-48
WP_002296486.1|2154887_2156063_-|portal	phage portal protein	portal	A0A2H4J5A4	uncultured_Caudovirales_phage	35.6	3.2e-64
WP_002317249.1|2156066_2156252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296487.1|2156217_2157912_-|terminase	terminase large subunit	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	43.8	9.1e-129
WP_002296488.1|2157908_2158382_-|terminase	phage terminase small subunit P27 family	terminase	NA	NA	NA	NA
>prophage 13
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	2586789	2642367	2912202	holin,transposase,tRNA,protease	Bacillus_phage(25.0%)	34	NA	NA
WP_002285932.1|2586789_2586969_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_002321622.1|2586962_2587175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_104674935.1|2587162_2587333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_099704171.1|2587756_2588497_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002285924.1|2588922_2591994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303189.1|2593900_2594662_-	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002344993.1|2594761_2596483_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.0	1.3e-37
WP_002304835.1|2596497_2598282_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.2	2.1e-46
WP_002285917.1|2598662_2600216_-	glycosyl hydrolase	NA	NA	NA	NA	NA
WP_002285916.1|2600563_2602978_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	72.8	0.0e+00
WP_002301403.1|2603404_2605423_-	LysM peptidoglycan-binding domain-containing protein	NA	Q9ZXE4	Bacillus_phage	39.6	5.8e-13
WP_002285911.1|2605792_2606449_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_002285909.1|2606448_2607405_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	57.4	3.3e-43
WP_002285906.1|2607404_2607971_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	42.8	2.2e-34
WP_002299614.1|2608406_2608637_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025479400.1|2610115_2610418_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303477.1|2611192_2612212_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
WP_002301818.1|2612222_2612429_-|holin	holin	holin	NA	NA	NA	NA
WP_002301399.1|2612561_2613521_-|transposase	IS30 family transposase	transposase	H7BW61	unidentified_phage	26.8	2.2e-10
WP_002304713.1|2613723_2614656_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	53.8	1.8e-57
WP_002341521.1|2614727_2615084_+	hypothetical protein	NA	U4KJ82	Streptococcus_phage	42.2	9.2e-15
WP_010729461.1|2615181_2616360_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002301355.1|2618698_2620471_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.4	1.2e-54
WP_002285883.1|2620473_2622186_-	ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	25.4	1.2e-14
WP_002285876.1|2622300_2622969_+	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002295567.1|2623035_2623824_-	esterase family protein	NA	NA	NA	NA	NA
WP_002295566.1|2623906_2625379_-	MFS transporter	NA	NA	NA	NA	NA
WP_002289731.1|2625508_2626702_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	72.0	1.3e-150
WP_073120117.1|2632403_2632601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002326809.1|2635134_2636430_+|transposase	ISL3-like element ISEfa5 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	21.4	5.0e-10
WP_002301217.1|2636539_2638036_-|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	40.9	6.7e-91
WP_002290055.1|2638146_2639151_-|tRNA	tRNA dihydrouridine synthase DusB	tRNA	NA	NA	NA	NA
WP_002296053.1|2639151_2640039_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA	NA
WP_002287418.1|2640255_2642367_-|protease	ATP-dependent zinc metalloprotease FtsH	protease	C7U047	Ostreococcus_tauri_virus	50.3	9.1e-110
>prophage 14
NZ_CP035660	Enterococcus faecium strain UAMSEF_09 chromosome, complete genome	2912202	2753176	2809162	2912202	integrase,transposase	Streptococcus_phage(70.0%)	49	2759569:2759583	2808841:2808855
WP_086956687.1|2753176_2754339_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002331276.1|2754379_2754625_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_002331275.1|2754723_2755038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331274.1|2755105_2755600_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331273.1|2755592_2755907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002321376.1|2755887_2756079_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322532.1|2758115_2758313_-	hypothetical protein	NA	NA	NA	NA	NA
2759569:2759583	attL	CCAGTTTTGCCAGCT	NA	NA	NA	NA
WP_023043245.1|2760969_2761188_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002340551.1|2761263_2762316_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_002321715.1|2762468_2762795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002319736.1|2762806_2763007_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002321714.1|2763081_2763732_+	helix-turn-helix transcriptional regulator	NA	Q20DG0	Lactobacillus_phage	33.3	3.2e-05
WP_002318021.1|2763786_2764953_+|integrase	site-specific integrase	integrase	A0A172LN96	Lactococcus_phage	34.0	3.3e-45
WP_070557977.1|2765369_2768597_+	fibrinogen-binding MSCRAMM adhesin Fss3	NA	NA	NA	NA	NA
WP_002297366.1|2768709_2769024_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	53.4	1.0e-25
WP_002297365.1|2769036_2769411_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	66.1	2.4e-34
WP_002311649.1|2769411_2769756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130587595.1|2769838_2771179_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	65.0	1.5e-163
WP_002321810.1|2772162_2772597_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SDW2	Streptococcus_phage	77.1	6.5e-63
WP_002297356.1|2772597_2773305_+	DNA methylase	NA	A0A1S5SEK0	Streptococcus_phage	50.4	5.8e-53
WP_002297354.1|2773294_2773585_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297353.1|2773843_2775028_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	61.6	2.9e-142
WP_002317225.1|2775024_2775162_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_033658092.1|2777922_2778147_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	83.8	1.2e-23
WP_002297350.1|2778159_2778663_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	59.9	9.2e-53
WP_002297349.1|2778722_2779112_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	68.3	3.9e-43
WP_002297348.1|2779098_2781546_+	ATP-binding protein	NA	A0A1S5SF64	Streptococcus_phage	76.0	0.0e+00
WP_002297347.1|2781550_2783674_+	hypothetical protein	NA	A0A1S5SF30	Streptococcus_phage	59.7	1.2e-181
WP_002297346.1|2783670_2784675_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	63.5	5.6e-118
WP_002297345.1|2784693_2785605_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	44.0	2.2e-65
WP_002297343.1|2786264_2786480_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130587592.1|2787241_2788681_-	MFS transporter	NA	NA	NA	NA	NA
WP_130587593.1|2789130_2789901_-	AP2 domain-containing protein	NA	A0A0C5K996	Enterococcus_phage	34.3	9.6e-09
WP_125281871.1|2790249_2791749_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A075BS18	Microcystis_phage	46.1	2.0e-18
WP_002297337.1|2791860_2793204_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_138556308.1|2793337_2799769_-	repetitive surface protein Esp	NA	NA	NA	NA	NA
WP_002332818.1|2800385_2800820_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130587557.1|2800836_2802042_-	YSIRK-targeted surface antigen transcriptional regulator	NA	NA	NA	NA	NA
WP_002302419.1|2802735_2803122_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002302418.1|2803219_2803411_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_130587559.1|2803960_2804257_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002297332.1|2804166_2804361_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_002348989.1|2804399_2804546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_130587556.1|2804517_2804697_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_130587555.1|2804972_2806313_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.7	5.6e-65
WP_130587554.1|2806348_2806591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_130587553.1|2806553_2808170_-	GTP-binding protein	NA	NA	NA	NA	NA
WP_002317220.1|2808287_2808506_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_130587552.1|2808526_2809162_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	34.2	1.2e-17
2808841:2808855	attR	AGCTGGCAAAACTGG	NA	NA	NA	NA
>prophage 1
NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	295052	3393	56944	295052	integrase,transposase,holin,protease	Streptococcus_phage(25.0%)	55	NA	NA
WP_002287107.1|3393_4644_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002295673.1|5052_5292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295672.1|5358_5568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002336710.1|5627_6299_+	class A sortase	NA	NA	NA	NA	NA
WP_010729784.1|6351_8328_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_010729785.1|8340_9096_+	class C sortase	NA	NA	NA	NA	NA
WP_002350398.1|9092_9917_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002343441.1|9926_10175_+	hypothetical protein	NA	NA	NA	NA	NA
WP_025481135.1|10205_12317_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_138556309.1|12478_13774_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.9	1.5e-54
WP_130587577.1|13865_15923_-|protease	serine protease	protease	NA	NA	NA	NA
WP_002296354.1|16036_16249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296355.1|16435_16903_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321279.1|16899_17142_+	DUF5415 family protein	NA	NA	NA	NA	NA
WP_002296358.1|17159_17462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010729787.1|17533_19588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086322090.1|19587_22200_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_002302858.1|22196_24575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302857.1|24635_25178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302856.1|25255_25588_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302855.1|25588_26182_+	hypothetical protein	NA	NA	NA	NA	NA
WP_065305674.1|26203_27898_+	ATPase	NA	NA	NA	NA	NA
WP_002305175.1|28165_28399_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305177.1|28585_30463_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	26.3	9.1e-29
WP_002296365.1|30970_32176_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q6SEC2	Lactobacillus_prophage	42.4	2.5e-32
WP_002296371.1|32191_32836_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010729790.1|32846_33653_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002313120.1|33674_33905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002325546.1|34450_34726_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330592.1|34767_35190_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330591.1|35208_36801_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330590.1|36812_37148_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002330589.1|37294_37489_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138556918.1|37520_39893_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	30.2	3.0e-13
WP_002313123.1|39953_41423_+	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_002299811.1|43787_44384_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002301800.1|44396_45296_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_002301801.1|45298_45430_+	single-stranded DNA-binding protein	NA	A8ATZ7	Listeria_phage	83.3	1.3e-11
WP_002305808.1|45451_45784_+	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	53.2	6.1e-21
WP_002295625.1|45805_46063_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295624.1|46221_46344_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_074399798.1|46533_46758_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	56.9	3.6e-09
WP_002324499.1|47205_47412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287517.1|47411_47663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305049.1|47678_48116_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305050.1|48108_48804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002324500.1|48968_49169_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305052.1|49643_50075_+	antitoxin HicB	NA	F0PIL2	Enterococcus_phage	64.9	4.3e-43
WP_002323453.1|50482_51100_+	recombinase family protein	NA	A0A1V0E035	Clostridioides_phage	36.7	2.5e-15
WP_010729769.1|51257_52484_-|integrase	site-specific integrase	integrase	A0A097BYJ7	Leuconostoc_phage	24.2	3.2e-14
WP_071870188.1|52557_52725_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002328876.1|53271_54180_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_002328877.1|54236_54734_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002328878.1|54770_55466_-	HisJ family histidinol phosphate phosphatase	NA	NA	NA	NA	NA
WP_000997695.1|55765_56944_+|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
>prophage 2
NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	295052	96564	129009	295052	integrase,transposase	Streptococcus_phage(25.0%)	26	95204:95221	141807:141824
95204:95221	attL	GTATCAAAAACAATCGAT	NA	NA	NA	NA
WP_002290382.1|96564_97038_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A097PAS9	Streptococcus_pyogenes_phage	44.2	2.3e-13
WP_002290383.1|97210_97765_-|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_002300314.1|98237_99407_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002319325.1|100426_101044_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311006.1|102107_102329_-	hypothetical protein	NA	NA	NA	NA	NA
WP_008271463.1|102426_102672_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002344895.1|103895_104897_-	DUF4062 domain-containing protein	NA	NA	NA	NA	NA
WP_002344896.1|105055_105322_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002344897.1|105311_105668_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_044383156.1|105959_106640_-|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	83.6	3.2e-109
WP_002300557.1|108959_109247_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002292678.1|109236_109566_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_010729757.1|112829_113702_-	ROK family protein	NA	NA	NA	NA	NA
WP_002322556.1|113718_115191_-	glycoside hydrolase family 32 protein	NA	NA	NA	NA	NA
WP_002313079.1|115204_116053_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002322555.1|116049_116916_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002322554.1|116958_118317_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010729506.1|118411_119383_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	22.4	1.2e-05
WP_002313084.1|120417_121023_+	recombinase family protein	NA	A0A219YA40	Aeromonas_phage	32.6	3.6e-19
WP_002348862.1|122141_122351_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301399.1|122411_123371_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.5	5.0e-31
WP_010729754.1|123920_124829_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_010729753.1|124888_126691_-	exonuclease DNA polymerase III epsilon subunit	NA	A0A0A7RWA3	Clostridium_phage	30.4	7.6e-33
WP_002342384.1|126753_127596_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002331328.1|127611_127833_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_085910366.1|128322_129009_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.9e-127
141807:141824	attR	ATCGATTGTTTTTGATAC	NA	NA	NA	NA
>prophage 3
NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	295052	142034	194538	295052	transposase	Streptococcus_phage(43.75%)	56	NA	NA
WP_010729749.1|142034_143327_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_002285758.1|143405_143600_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287659.1|143589_143943_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
WP_002302440.1|145823_147125_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
WP_002389879.1|147303_147573_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A1S5SCV8	Streptococcus_phage	48.8	8.7e-18
WP_086322080.1|147562_147901_-	antitoxin	NA	NA	NA	NA	NA
WP_077974475.1|147897_148125_-	ADP-ribosylglycohydrolase family protein	NA	NA	NA	NA	NA
WP_010729807.1|148329_148962_-	HAD family phosphatase	NA	A0A1D8KNV9	Synechococcus_phage	27.9	3.0e-08
WP_010729806.1|148974_151698_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_002322451.1|151834_152800_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002298371.1|152853_153666_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_010729805.1|153679_154453_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002298375.1|154466_154937_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002298377.1|154933_155350_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002311511.1|155674_156517_+	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_002299197.1|159099_159711_+	VanZ family protein	NA	NA	NA	NA	NA
WP_002299198.1|159783_160713_+	D-alanyl-D-alanine carboxypeptidase	NA	A0A1P8VVG5	Erythrobacter_phage	23.3	1.1e-06
WP_074394709.1|160870_161608_+	TraM recognition domain-containing protein	NA	NA	NA	NA	NA
WP_010729801.1|161655_162834_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	27.1	2.7e-23
WP_080114943.1|163060_163462_+	hypothetical protein	NA	A0A0N9S006	Staphylococcus_phage	49.2	2.5e-24
WP_002301682.1|165424_166234_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002301683.1|166233_166980_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002301684.1|166997_167465_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002301685.1|167464_167875_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002301686.1|167885_168899_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_010729798.1|169115_169850_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010729797.1|169833_170544_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_010861579.1|170597_171276_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	98.7	2.9e-126
WP_002299575.1|171465_172050_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	5.9e-43
WP_002299573.1|172260_172464_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288787.1|172473_172896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010729795.1|173209_173824_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	31.4	6.4e-16
WP_002321032.1|173847_174198_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_002287514.1|174191_174455_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305761.1|174795_174975_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002330566.1|174990_175191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002353391.1|175355_176063_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296237.1|176055_176493_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296238.1|176507_176759_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296239.1|176758_176965_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002369675.1|177233_177428_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296240.1|177405_177666_-	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	3.4e-11
WP_002296241.1|178031_178517_-	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	59.9	3.4e-44
WP_002322787.1|178519_179419_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_002330563.1|179434_180028_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_010729792.1|182480_183941_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138556310.1|184001_185813_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002330536.1|186781_188032_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	3.0e-113
WP_002322479.1|188167_188362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086968564.1|188609_189750_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.7	3.8e-78
WP_002296379.1|190253_191846_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010729773.1|191864_192287_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296377.1|192288_192585_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305788.1|192816_193086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086322097.1|193129_193795_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002354485.1|193851_194538_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
>prophage 4
NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	295052	201569	250560	295052	transposase	Streptococcus_phage(50.0%)	42	NA	NA
WP_001015311.1|201569_202248_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	1.5e-127
WP_002305828.1|203151_203676_+	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_000353845.1|204051_204333_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305824.1|204334_204751_+	hypothetical protein	NA	NA	NA	NA	NA
WP_102962130.1|205252_206326_-	Abi family protein	NA	NA	NA	NA	NA
WP_002354485.1|207582_208269_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_138556920.1|212093_212330_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_000085862.1|213491_213623_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	100.0	7.9e-17
WP_001814874.1|214492_214576_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_000997689.1|217525_218566_-	replication initiator protein A	NA	NA	NA	NA	NA
WP_000796719.1|218914_219241_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000101106.1|219227_220016_-	ParA family protein	NA	H7BUL8	unidentified_phage	35.7	4.7e-27
WP_000026576.1|220383_220674_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021554.1|220809_220989_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000568378.1|220985_221336_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000969590.1|221328_222654_-	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	44.0	6.3e-101
WP_001261742.1|223103_223718_+	recombinase family protein	NA	M9Q1K0	Clostridium_phage	30.9	3.8e-16
WP_000455809.1|223882_224887_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000588503.1|225345_225603_-	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_000388479.1|225595_225865_-	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_001120991.1|225995_226175_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001033544.1|226190_226391_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_002287920.1|227197_227876_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	7.6e-127
WP_000443455.1|231192_232668_-	RNA-directed DNA polymerase	NA	Q2P9X6	Enterobacteria_phage	34.8	3.5e-68
WP_000017403.1|234242_234806_+	recombinase family protein	NA	A0A219Y9V9	Aeromonas_phage	46.4	2.3e-36
WP_000312841.1|235084_235372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000629052.1|235361_235691_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000754864.1|235995_236325_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	44.6	2.6e-16
WP_000516404.1|236611_237097_-	glycopeptide resistance protein VanZ-A	NA	NA	NA	NA	NA
WP_001812592.1|237249_238161_-	D-Ala-D-Ala carboxypeptidase VanY-A	NA	NA	NA	NA	NA
WP_002354485.1|238248_238935_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_063610281.1|240785_241661_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A0N9SKF6	Staphylococcus_phage	100.0	2.2e-166
WP_002319817.1|242392_243073_+|transposase	IS6-like element ISS1N family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	84.1	2.5e-109
WP_010729776.1|243078_243549_+	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	33.6	1.5e-09
WP_000824191.1|243593_243761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000366408.1|243794_244094_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001224538.1|244134_244752_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	33.1	5.1e-13
WP_002304891.1|245076_245472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000344083.1|245551_247903_-	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_000718009.1|248027_248717_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000751236.1|248730_249183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_086968564.1|249418_250560_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.7	3.8e-78
