The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	2870494	750469	758289	2870494		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|750469_751525_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|751524_752211_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|752185_752659_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|753000_753441_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|753720_754305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001062972.1|754403_755117_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000941336.1|755120_755540_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|755541_756210_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|756560_757154_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|757137_758289_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 2
NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	2870494	770261	784878	2870494		uncultured_Caudovirales_phage(50.0%)	16	NA	NA
WP_000663030.1|770261_771320_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|771670_772213_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|772892_773810_-	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|773900_774002_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|774079_775585_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001788366.1|775650_775896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930014.1|775925_776426_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|776445_777312_-	DMT family transporter	NA	NA	NA	NA	NA
WP_001790091.1|777696_777963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000692521.1|778112_778511_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|778473_780579_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|780696_781668_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|782011_782167_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|782205_783177_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|783163_784120_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|784116_784878_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 3
NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	2870494	1479653	1566406	2870494	portal,integrase,tRNA,terminase,holin,plate,capsid,tail,protease,head	Staphylococcus_phage(79.22%)	106	1518626:1518643	1564923:1564940
WP_000858789.1|1479653_1480946_-|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	30.0	1.9e-54
WP_000525070.1|1481267_1483961_-	ATP-dependent helicase DinG	NA	A0A1X9I5C8	Streptococcus_phage	34.4	8.2e-47
WP_000049919.1|1483984_1484956_-	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA	NA
WP_000361544.1|1484942_1486145_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	42.5	3.2e-35
WP_000690027.1|1486149_1487292_-	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA	NA
WP_000839926.1|1487532_1487850_-	nucleotide pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_001827022.1|1488186_1488867_-	zinc metallopeptidase	NA	NA	NA	NA	NA
WP_000152734.1|1488938_1489526_-	DUF1405 domain-containing protein	NA	NA	NA	NA	NA
WP_000004947.1|1489515_1490091_-	IDEAL domain-containing protein	NA	G3MAV7	Bacillus_virus	27.2	2.7e-08
WP_000389524.1|1490104_1491349_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000245895.1|1491355_1492654_-	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA	NA
WP_000776323.1|1492663_1493728_-	3-dehydroquinate synthase	NA	NA	NA	NA	NA
WP_001269929.1|1493753_1494920_-	chorismate synthase	NA	A0A291AU41	Pandoravirus	32.1	7.6e-34
WP_000789522.1|1495305_1495506_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000442480.1|1495714_1496164_-	nucleoside-diphosphate kinase	NA	D2E8E1	Anguillid_herpesvirus	43.8	2.4e-28
WP_001817755.1|1496255_1497200_-	heptaprenyl diphosphate synthase subunit II	NA	A0A1V0SE37	Indivirus	24.4	1.3e-10
WP_000774684.1|1497216_1497942_-	demethylmenaquinone methyltransferase	NA	NA	NA	NA	NA
WP_000450553.1|1497944_1498517_-	heptaprenyl diphosphate synthase component 1	NA	NA	NA	NA	NA
WP_001043863.1|1498947_1499220_-	HU family DNA-binding protein	NA	A7KV42	Bacillus_phage	73.3	4.2e-28
WP_000161738.1|1499390_1500389_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_000165530.1|1500405_1501716_-	ribosome biogenesis GTPase Der	NA	NA	NA	NA	NA
WP_000133954.1|1501937_1503113_-	30S ribosomal protein S1	NA	NA	NA	NA	NA
WP_001789944.1|1503369_1503561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001789945.1|1503677_1503794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000644395.1|1503824_1504484_-	(d)CMP kinase	NA	NA	NA	NA	NA
WP_000681756.1|1504560_1505529_+	asparaginase	NA	NA	NA	NA	NA
WP_001174260.1|1505643_1506630_-	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA	NA
WP_001789943.1|1506790_1506907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000069282.1|1507031_1508492_-	elastin-binding protein EbpS	NA	NA	NA	NA	NA
WP_000902119.1|1508644_1510024_-	ATP-dependent DNA helicase RecQ	NA	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	33.6	2.9e-56
WP_001163801.1|1510013_1510967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151997.1|1511074_1511323_+	ferredoxin	NA	A0A127AYY7	Bacillus_phage	48.0	8.3e-15
WP_001186912.1|1511428_1511974_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_001789947.1|1512252_1512372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000913219.1|1512570_1513485_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_001033757.1|1513499_1513706_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000472936.1|1513698_1514637_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000476873.1|1514694_1515612_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000126130.1|1515702_1515918_-	hypothetical protein	NA	A0ZS61	Staphylococcus_virus	100.0	2.0e-25
WP_000966213.1|1515981_1516281_-	hypothetical protein	NA	A7TWL2	Staphylococcus_phage	94.7	1.7e-46
WP_000909213.1|1516639_1518094_-	CHAP domain-containing protein	NA	U5U7D2	Staphylococcus_phage	100.0	2.6e-289
WP_000339146.1|1518104_1518407_-|holin	phage holin	holin	A0A2I6PET6	Staphylococcus_phage	100.0	7.0e-48
WP_000466784.1|1518542_1518842_-	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
1518626:1518643	attL	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000916020.1|1518887_1519052_-	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_001166599.1|1519044_1519434_-	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_031806950.1|1519433_1520900_-|plate	BppU family phage baseplate upper protein	plate	A0A2I6PES7	Staphylococcus_phage	99.8	9.9e-273
WP_000429558.1|1520899_1522810_-	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_000179858.1|1522825_1523116_-	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_031806952.1|1523115_1524699_-	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	99.8	1.3e-307
WP_001190533.1|1524707_1525532_-|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_001003424.1|1525531_1531732_-|tail	phage tail tape measure protein	tail	A0A1X9IGU9	Staphylococcus_phage	100.0	0.0e+00
WP_000438833.1|1531745_1531904_-	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_000589167.1|1531945_1532296_-	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000169127.1|1532353_1532809_-	Ig domain-containing protein	NA	A0A2I6PER6	Staphylococcus_phage	100.0	5.7e-78
WP_000807541.1|1532900_1533542_-|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	99.1	5.0e-120
WP_001023802.1|1533576_1533972_-	DUF3168 domain-containing protein	NA	A0A2I6PDD8	Staphylococcus_phage	100.0	2.6e-66
WP_000110020.1|1533972_1534374_-	hypothetical protein	NA	A0A2I6PDD3	Staphylococcus_phage	100.0	6.2e-68
WP_000395495.1|1534370_1534703_-	hypothetical protein	NA	A0A2I6PDD6	Staphylococcus_phage	99.1	8.2e-58
WP_000050973.1|1534714_1534993_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_001142738.1|1535061_1536225_-|capsid	phage major capsid protein	capsid	M9QQM0	Staphylococcus_phage	100.0	4.2e-218
WP_000061862.1|1536236_1537010_-|protease	Clp protease ClpP	protease	M1TAZ4	Staphylococcus_phage	98.4	3.0e-135
WP_001100671.1|1536993_1538232_-|portal	phage portal protein	portal	A0A2K9VBP0	Staphylococcus_phage	99.8	2.6e-234
WP_000153555.1|1538236_1539928_-|terminase	terminase large subunit	terminase	A0A2I6PE44	Staphylococcus_phage	100.0	0.0e+00
WP_000778932.1|1539917_1540223_-|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000160689.1|1540351_1540666_-	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000513699.1|1540822_1541260_-	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_001793488.1|1541272_1542640_-	DEAD/DEAH box helicase	NA	A0A2I6PE95	Staphylococcus_phage	100.0	1.7e-263
WP_000665205.1|1542620_1542911_-	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_001801650.1|1543044_1543143_+	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	3.7e-11
WP_000884870.1|1543251_1545699_-	hypothetical protein	NA	A0A2I6PEP4	Staphylococcus_phage	100.0	0.0e+00
WP_001548893.1|1545753_1545960_+	hypothetical protein	NA	A0A1X9IGZ9	Staphylococcus_phage	100.0	7.6e-30
WP_000265252.1|1545986_1546187_-	DUF1514 family protein	NA	A0A2I6PEP5	Staphylococcus_phage	100.0	4.9e-26
WP_000595263.1|1546254_1546407_-	transcriptional activator RinB	NA	A0A2I6PEM5	Staphylococcus_phage	100.0	2.0e-19
WP_000592205.1|1546403_1546790_-	hypothetical protein	NA	A0A0H3U465	Staphylococcus_phage	96.9	2.4e-61
WP_000195835.1|1546786_1546993_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	97.1	6.4e-29
WP_000185653.1|1547029_1547560_-	dUTP pyrophosphatase	NA	C8CH05	Staphylococcus_phage	100.0	1.7e-94
WP_001065071.1|1547552_1547801_-	DUF1024 family protein	NA	Q9B0F3	Staphylococcus_virus	97.6	2.0e-37
WP_000144703.1|1547793_1548102_-	hypothetical protein	NA	Q6R826	Staphylococcus_virus	96.1	8.4e-49
WP_000979209.1|1548098_1548446_-	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000693989.1|1548850_1549057_-	hypothetical protein	NA	A0A2K9VBT9	Staphylococcus_phage	100.0	3.0e-34
WP_078064221.1|1549070_1549319_-	hypothetical protein	NA	M9NTB1	Staphylococcus_phage	97.5	1.7e-39
WP_000022736.1|1549318_1549573_-	DUF3310 domain-containing protein	NA	Q6R831	Staphylococcus_virus	100.0	1.3e-42
WP_000113974.1|1549572_1549974_-	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_001164629.1|1549973_1550159_-	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_001802096.1|1550171_1552124_-	DNA polymerase	NA	A0A2I6PE86	Staphylococcus_phage	100.0	0.0e+00
WP_138642958.1|1552191_1552749_-	DUF2815 family protein	NA	A0A2I6PEP8	Staphylococcus_phage	99.5	6.7e-97
WP_000762552.1|1552774_1553941_-	DUF2800 domain-containing protein	NA	A0A2I6PEL9	Staphylococcus_phage	100.0	1.4e-221
WP_000985980.1|1553937_1554300_-	hypothetical protein	NA	A0A2I6PEM7	Staphylococcus_phage	99.2	1.9e-55
WP_001802832.1|1554313_1554598_-	DUF1108 family protein	NA	A0A2I6PEM2	Staphylococcus_phage	100.0	1.5e-47
WP_000163431.1|1554578_1554881_-	DUF2482 family protein	NA	A0A1X9IGX2	Staphylococcus_phage	100.0	2.4e-48
WP_001285951.1|1555284_1555446_-	DUF1270 domain-containing protein	NA	A0A2I6PEK6	Staphylococcus_phage	100.0	1.1e-20
WP_001124198.1|1555457_1555721_-	helix-turn-helix domain-containing protein	NA	A0A2I6PEL8	Staphylococcus_phage	100.0	2.5e-46
WP_001036299.1|1555745_1555961_-	hypothetical protein	NA	A0A2I6PEK7	Staphylococcus_phage	100.0	1.0e-32
WP_001566045.1|1556007_1556247_+	hypothetical protein	NA	A0A2I6PE22	Staphylococcus_phage	98.7	7.4e-37
WP_001115060.1|1556503_1556695_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PEL6	Staphylococcus_phage	100.0	2.3e-28
WP_000429766.1|1556855_1557185_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PEN2	Staphylococcus_phage	100.0	3.2e-54
WP_000525000.1|1557197_1557659_+	hypothetical protein	NA	A0A2I6PEK4	Staphylococcus_phage	99.3	1.3e-85
WP_000755718.1|1557676_1558111_+	hypothetical protein	NA	A0A2I6PEM0	Staphylococcus_phage	100.0	1.2e-24
WP_000449655.1|1558139_1558535_+	hypothetical protein	NA	A0A2I6PEJ7	Staphylococcus_phage	100.0	3.8e-70
WP_000227849.1|1558644_1558770_+	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	100.0	3.3e-12
WP_000191464.1|1558766_1559381_-	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_031806937.1|1559506_1560712_+|integrase	site-specific integrase	integrase	A0A2I6PEN0	Staphylococcus_phage	99.8	2.9e-222
WP_001566047.1|1560754_1562782_-	hypothetical protein	NA	B5WZK7	Staphylococcus_phage	97.7	6.9e-115
WP_001548912.1|1562774_1563704_-	DUF1672 domain-containing protein	NA	NA	NA	NA	NA
WP_000987769.1|1563948_1565700_-	HAMP domain-containing protein	NA	A0A1V0SGX0	Hokovirus	33.6	1.7e-21
1564923:1564940	attR	TGTCTCTAATATTTTTAG	NA	NA	NA	NA
WP_000064078.1|1565680_1566406_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	43.0	3.5e-45
>prophage 4
NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	2870494	1621530	1629842	2870494	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1621530_1622316_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1622441_1623332_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1623341_1624688_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1624801_1625902_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1625904_1626582_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1626712_1627819_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_001217261.1|1628042_1629842_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
>prophage 5
NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	2870494	1698980	1708023	2870494	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_000364542.1|1698980_1699499_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_000594993.1|1699520_1701794_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000749795.1|1701996_1704276_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1704550_1704811_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1704829_1705969_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1705991_1707017_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1707018_1708023_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
>prophage 6
NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	2870494	1833639	1951472	2870494	protease,transposase,tRNA	Staphylococcus_phage(89.39%)	115	NA	NA
WP_031901888.1|1833639_1840200_-	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	98.1	2.0e-304
WP_031806972.1|1840525_1840837_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	99.0	4.8e-52
WP_001549041.1|1840858_1843276_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1843563_1844745_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1844854_1845808_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1845804_1846368_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1846487_1846889_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000266096.1|1848467_1849295_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1849297_1849417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001834472.1|1849428_1849620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1849528_1850530_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1850651_1851116_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1851128_1852310_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_000493892.1|1852320_1852953_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_000384181.1|1852959_1853991_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261677.1|1854483_1855986_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1856508_1856823_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1856822_1858115_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1858132_1858528_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1858822_1859677_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1859952_1860177_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1860375_1860846_+	RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1860958_1861402_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1861388_1861832_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1862127_1862763_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1863202_1863916_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1864175_1864478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1864733_1865099_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1865095_1865449_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1867531_1868365_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1868576_1869485_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1869609_1870803_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_031806974.1|1871173_1872766_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	99.8	0.0e+00
WP_000093392.1|1872901_1873387_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1873761_1874508_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1874512_1874986_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1875051_1875309_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1875305_1876307_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1876311_1877790_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1877948_1878404_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1878706_1879357_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_031806886.1|1879437_1880448_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.2e-73
WP_000093392.1|1880551_1881037_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_000669046.1|1881249_1881876_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1881916_1882261_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1882358_1882910_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1883127_1883769_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1883882_1884068_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1884069_1884246_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1884256_1884640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001790863.1|1884831_1885041_-|transposase	transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	100.0	1.4e-31
WP_001549059.1|1885243_1885387_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001801861.1|1885589_1885685_+	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001791893.1|1885807_1885909_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002868972.1|1886256_1886616_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000831218.1|1887154_1891267_-	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_000072576.1|1892116_1893316_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_011443644.1|1893308_1895048_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_001791797.1|1895028_1895163_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1895227_1895947_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1896097_1896814_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1896915_1897023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1896971_1897691_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1897811_1898531_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1898588_1899311_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039435.1|1899435_1900143_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	100.0	2.6e-130
WP_001790219.1|1900578_1900797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092763.1|1901106_1901673_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1902146_1902845_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1902841_1903603_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1903599_1904292_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1904314_1905688_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1905697_1906216_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566596.1|1906231_1907476_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_001092605.1|1907468_1910462_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1910526_1910670_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001790705.1|1911113_1911305_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000416759.1|1911406_1911550_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1911791_1912775_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_031806869.1|1912776_1913712_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	1.8e-174
WP_001790220.1|1914511_1915051_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1915063_1915852_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
WP_000132890.1|1918308_1918863_-	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_001790152.1|1918956_1919184_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000167538.1|1919185_1920586_-	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000162881.1|1920609_1921533_-	ferrochelatase	NA	NA	NA	NA	NA
WP_000233526.1|1921590_1922628_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_001790154.1|1922617_1922728_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000737976.1|1922890_1923394_+	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_031806870.1|1923517_1924741_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000216878.1|1924733_1925474_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_138642967.1|1925607_1926030_+	HIT family protein	NA	NA	NA	NA	NA
WP_000648118.1|1926171_1926537_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000477959.1|1927269_1927827_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000782121.1|1928030_1928993_+	foldase	NA	NA	NA	NA	NA
WP_001244175.1|1929113_1930055_-	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000584648.1|1930051_1932988_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_000238227.1|1932977_1934174_-	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_001791795.1|1934464_1934563_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000290301.1|1934945_1935290_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_000992527.1|1935358_1936483_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000375864.1|1936661_1937126_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001045133.1|1937481_1938105_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000437967.1|1938126_1939239_-	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_000669376.1|1939401_1940223_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000116224.1|1940685_1942071_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000901021.1|1942266_1942662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000031108.1|1943438_1943591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031806872.1|1943615_1944215_-	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000181398.1|1944373_1944844_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001789049.1|1944848_1945991_-|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_001144055.1|1946126_1946855_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_000649907.1|1946841_1948299_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063582.1|1948556_1949618_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_001549130.1|1950110_1951472_+|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
>prophage 7
NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	2870494	1976455	2018221	2870494	portal,integrase,terminase,holin,capsid,plate,tail,head	Staphylococcus_phage(59.38%)	64	2008723:2008738	2022920:2022935
WP_000382163.1|1976455_1976656_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|1976642_1976753_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|1976823_1976976_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001148115.1|1977218_1978664_-	CHAP domain-containing protein	NA	Q4ZB16	Staphylococcus_virus	99.6	9.1e-295
WP_000354129.1|1978644_1979082_-|holin	phage holin	holin	A7YGY0	Staphylococcus_virus	97.9	5.9e-72
WP_015978410.1|1979137_1979533_-	hypothetical protein	NA	A0A2H4PQP8	Staphylococcus_phage	100.0	2.1e-68
WP_138642969.1|1979538_1980711_-|plate	BppU family phage baseplate upper protein	plate	I1W629	Staphylococcus_phage	99.5	7.1e-197
WP_138642971.1|1980723_1982616_-	CHAP domain-containing protein	NA	B7T0E8	Staphylococcus_virus	93.8	0.0e+00
WP_102947779.1|1982742_1983111_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	94.3	3.1e-26
WP_031766783.1|1983195_1983351_-	XkdX family protein	NA	M9QX31	Staphylococcus_phage	90.2	9.1e-20
WP_000705912.1|1983343_1983730_-	DUF2977 domain-containing protein	NA	W5R9M2	Staphylococcus_phage	86.5	4.1e-45
WP_138642973.1|1983729_1985553_-|plate	BppU family phage baseplate upper protein	plate	Q4ZDD5	Staphylococcus_virus	94.9	8.5e-282
WP_138642975.1|1985552_1987463_-	hypothetical protein	NA	Q4ZDU1	Staphylococcus_virus	97.8	0.0e+00
WP_000156406.1|1987477_1989379_-	peptidase	NA	Q8SDT5	Staphylococcus_phage	100.0	0.0e+00
WP_110194905.1|1989387_1990335_-|tail	phage tail family protein	tail	Q8SDT6	Staphylococcus_phage	99.7	6.1e-183
WP_138642977.1|1990347_1993812_-	hypothetical protein	NA	Q4ZDU6	Staphylococcus_virus	94.9	1.9e-261
WP_000105584.1|1993828_1994173_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100161.1|1994202_1994568_-	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000002578.1|1994630_1995212_-|tail	phage major tail protein, TP901-1 family	tail	A0EWT6	Staphylococcus_virus	100.0	1.8e-105
WP_000188649.1|1995230_1995614_-	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
WP_001017815.1|1995625_1995973_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_001268312.1|1995972_1996275_-	hypothetical protein	NA	A4ZFB6	Staphylococcus_virus	100.0	1.1e-50
WP_000208960.1|1996271_1996604_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001114085.1|1996612_1996900_-	hypothetical protein	NA	S4V6D9	Staphylococcus_phage	100.0	4.7e-46
WP_138642979.1|1996921_1997896_-|capsid	phage major capsid protein	capsid	S4V686	Staphylococcus_phage	99.1	2.0e-181
WP_000354306.1|1997909_1998524_-	DUF4355 domain-containing protein	NA	I1W646	Staphylococcus_phage	99.5	3.7e-40
WP_110194901.1|1998901_1999897_-|head	phage head morphogenesis protein	head	E0Y3K7	Staphylococcus_virus	99.7	4.5e-184
WP_000921892.1|1999903_2001439_-|portal	phage portal protein	portal	Q4ZDV9	Staphylococcus_virus	99.4	9.3e-290
WP_000169938.1|2001449_2002727_-|terminase	PBSX family phage terminase large subunit	terminase	A0EWS5	Staphylococcus_virus	99.8	8.7e-249
WP_031883675.1|2002713_2003154_-|terminase	terminase small subunit	terminase	I1W650	Staphylococcus_phage	99.3	1.8e-73
WP_000058634.1|2003340_2003760_-	transcriptional regulator	NA	B7T0C4	Staphylococcus_virus	100.0	1.1e-70
WP_000989961.1|2003774_2003921_-	hypothetical protein	NA	E0Y3R6	Staphylococcus_virus	100.0	1.7e-15
WP_000383791.1|2003921_2004284_-	hypothetical protein	NA	Q4ZDW4	Staphylococcus_virus	94.1	5.2e-58
WP_029625632.1|2004284_2004458_-	transcriptional regulator	NA	Q4ZBK0	Staphylococcus_phage	98.2	1.4e-21
WP_029625633.1|2004454_2004661_-	DUF1381 domain-containing protein	NA	A0A2I6PDB6	Staphylococcus_phage	85.3	1.9e-25
WP_061642299.1|2004697_2005228_-	dUTPase	NA	B2ZYX2	Staphylococcus_phage	98.3	1.0e-94
WP_072466723.1|2005220_2005415_-	hypothetical protein	NA	A1KX84	Staphylococcus_virus	98.4	1.6e-26
WP_017804684.1|2005377_2005632_-	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	100.0	1.4e-38
WP_110194899.1|2005624_2005990_-	acetyltransferase	NA	A1KX82	Staphylococcus_virus	96.7	2.1e-59
WP_000695766.1|2005986_2006388_-	hypothetical protein	NA	S4V6D5	Staphylococcus_phage	99.2	2.1e-68
WP_001126832.1|2006400_2006649_-	hypothetical protein	NA	S4SVD3	Staphylococcus_phage	100.0	4.2e-43
WP_001140278.1|2006649_2007021_-	hypothetical protein	NA	A7TWN6	Staphylococcus_phage	95.1	1.3e-51
WP_001187244.1|2007021_2007207_-	DUF3113 family protein	NA	A0A2H4JAM6	uncultured_Caudovirales_phage	100.0	5.4e-27
WP_000049804.1|2007211_2007616_-	DUF1064 domain-containing protein	NA	A0A1W6JPX0	Staphylococcus_phage	100.0	3.6e-68
WP_001123679.1|2007626_2007848_-	DUF3269 family protein	NA	Q9G021	Staphylococcus_phage	98.6	3.8e-35
WP_000803056.1|2008015_2008795_-	ATP-binding protein	NA	Q9G022	Staphylococcus_virus	100.0	2.4e-145
2008723:2008738	attL	ATCCTTTTTCGACATG	NA	NA	NA	NA
WP_000139436.1|2008805_2009549_-	alpha/beta hydrolase	NA	A0A2I6PDA9	Staphylococcus_phage	99.6	2.5e-115
WP_000240900.1|2009541_2010306_-	AP2 domain-containing protein	NA	A0A2I6PDA5	Staphylococcus_phage	98.4	5.0e-143
WP_001121805.1|2010305_2010974_-	hypothetical protein	NA	Q4ZD97	Staphylococcus_virus	98.2	1.1e-125
WP_000934782.1|2010987_2011416_-	single-stranded DNA-binding protein	NA	A0A0E3XC62	Staphylococcus_phage	90.8	1.7e-63
WP_000139720.1|2011415_2012039_-	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_001077280.1|2012031_2012253_-	DUF2483 family protein	NA	A0A0E3TAJ7	Staphylococcus_phage	100.0	2.4e-34
WP_000291090.1|2012262_2012523_-	DUF1108 family protein	NA	Q4ZDA1	Staphylococcus_virus	100.0	1.2e-43
WP_000066011.1|2012619_2012781_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000594789.1|2012773_2012995_-	hypothetical protein	NA	B2ZYU8	Staphylococcus_phage	100.0	8.7e-32
WP_000395457.1|2013065_2013296_+	hypothetical protein	NA	R4IG40	Staphylococcus_phage	100.0	2.3e-35
WP_000390105.1|2013499_2013694_-	hypothetical protein	NA	E9LT75	Staphylococcus_phage	100.0	1.2e-29
WP_001148566.1|2013710_2014499_-	phage antirepressor KilAC domain-containing protein	NA	A0EWP1	Staphylococcus_virus	100.0	4.2e-145
WP_001198673.1|2014514_2014733_-	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_000358224.1|2014874_2015594_+	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_000705238.1|2015663_2015831_+	hypothetical protein	NA	Q4ZDJ4	Staphylococcus_virus	100.0	1.7e-24
WP_000392183.1|2015970_2016903_+	hypothetical protein	NA	A0EX19	Staphylococcus_virus	100.0	6.7e-174
WP_000337827.1|2016882_2017062_-	hypothetical protein	NA	Q4ZBP0	Staphylococcus_phage	100.0	3.7e-25
WP_001145722.1|2017174_2018221_+|integrase	site-specific integrase	integrase	Q4ZB10	Staphylococcus_virus	100.0	5.5e-201
2022920:2022935	attR	CATGTCGAAAAAGGAT	NA	NA	NA	NA
>prophage 8
NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	2870494	2053689	2141367	2870494	portal,integrase,terminase,holin,capsid,tail,head,protease	Staphylococcus_phage(92.31%)	112	2102520:2102537	2127451:2127468
WP_000827748.1|2053689_2054856_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|2054886_2055213_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|2055504_2055678_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|2055658_2056261_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|2056531_2057353_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|2057345_2058815_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|2058998_2060075_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|2060094_2060889_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|2060960_2061068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|2061078_2062641_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|2062845_2063943_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|2064314_2064875_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|2064927_2065857_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001797527.1|2066051_2066225_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|2066276_2067656_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_000181322.1|2067775_2068804_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|2069073_2069475_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|2070047_2070221_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|2070671_2071712_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|2071768_2072611_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|2072607_2073165_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|2073224_2073749_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|2073869_2074433_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|2074498_2075239_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|2075238_2076111_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|2076107_2076788_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|2076788_2077685_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|2077681_2078062_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|2078325_2078502_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|2078744_2078843_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138642983.1|2079042_2080329_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001577741.1|2080652_2082707_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|2083664_2083844_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001795394.1|2083867_2084176_+	hypothetical protein	NA	M9NTD8	Staphylococcus_phage	100.0	2.1e-39
WP_001791826.1|2084154_2084415_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|2084467_2084818_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
WP_000727649.1|2085502_2085952_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|2086046_2086505_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|2087031_2087523_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|2087713_2088469_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|2088480_2088735_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|2088786_2088894_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|2088946_2089123_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000539688.1|2089272_2089569_-	DUF2951 domain-containing protein	NA	D2JLG2	Staphylococcus_phage	100.0	2.9e-46
WP_001040261.1|2089626_2089914_-	hypothetical protein	NA	D2JLG1	Staphylococcus_phage	100.0	1.3e-43
WP_001153681.1|2089960_2090113_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582165.1|2090102_2093888_-	hypothetical protein	NA	A0A1X9H0H3	Staphylococcus_phage	98.5	0.0e+00
WP_000567394.1|2093903_2095388_-|tail	phage tail protein	tail	A0A0H3U501	Staphylococcus_phage	100.0	2.0e-297
WP_001551779.1|2095384_2099914_-|tail	phage tail tape measure protein	tail	A0A1X9H084	Staphylococcus_phage	95.0	0.0e+00
WP_001096354.1|2100158_2100509_-	hypothetical protein	NA	A0A0H3U503	Staphylococcus_phage	100.0	1.3e-58
WP_094969769.1|2100558_2100798_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	94.6	4.0e-30
WP_000260578.1|2100824_2101469_-|tail	phage tail protein	tail	A0A0H3U4E6	Staphylococcus_phage	100.0	6.5e-120
WP_000565500.1|2101472_2101877_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	95.5	1.4e-67
WP_000114229.1|2101873_2102278_-	hypothetical protein	NA	A0A0H3U2V1	Staphylococcus_phage	100.0	8.7e-70
WP_000755150.1|2102274_2102637_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
2102520:2102537	attL	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000150936.1|2102620_2102905_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|2102894_2103179_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|2103198_2104344_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_000642728.1|2104367_2105105_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	100.0	1.8e-129
WP_000025274.1|2105088_2106276_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|2106291_2107953_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|2107949_2108294_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|2108423_2108723_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|2108954_2109371_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|2109398_2109599_-	DUF1514 family protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|2109598_2109748_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|2109744_2110131_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|2110127_2110334_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_001282074.1|2110330_2110576_-	hypothetical protein	NA	A0A2I6PDW7	Staphylococcus_phage	100.0	5.0e-36
WP_000181819.1|2110612_2111146_-	dUTP pyrophosphatase	NA	A0A0H3U2T1	Staphylococcus_phage	100.0	1.6e-95
WP_000700108.1|2111138_2111381_-	hypothetical protein	NA	A0A2I6PF40	Staphylococcus_phage	100.0	3.7e-36
WP_001065101.1|2111370_2111607_-	DUF1024 family protein	NA	A0A0H3U313	Staphylococcus_phage	100.0	5.3e-35
WP_001549172.1|2111599_2111971_-	hypothetical protein	NA	A0A0H3U4X7	Staphylococcus_phage	97.3	4.7e-54
WP_000131383.1|2111979_2112222_-	hypothetical protein	NA	A0A0H3U4B0	Staphylococcus_phage	100.0	1.1e-40
WP_000101288.1|2112225_2112594_-	hypothetical protein	NA	A0A0H3U2T3	Staphylococcus_phage	100.0	2.0e-49
WP_000401977.1|2112606_2113011_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0H3U2W2	Staphylococcus_phage	100.0	1.4e-72
WP_000338530.1|2113019_2113238_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	100.0	1.0e-37
WP_000148333.1|2113244_2114138_-	DnaD domain-containing protein	NA	A0A1P8L6F0	Staphylococcus_phage	100.0	3.2e-141
WP_000934753.1|2114167_2114638_-	single-stranded DNA-binding protein	NA	A0A0H3U4B5	Staphylococcus_phage	100.0	4.4e-81
WP_071665632.1|2114638_2115256_-	MBL fold metallo-hydrolase	NA	A0A0H3U2T4	Staphylococcus_phage	100.0	4.1e-87
WP_000138475.1|2115336_2116257_-	recombinase	NA	A0A2I6PDH5	Staphylococcus_phage	100.0	2.3e-166
WP_000700561.1|2116258_2118202_-	AAA family ATPase	NA	A0A2I6PDH3	Staphylococcus_phage	94.7	0.0e+00
WP_001205732.1|2118210_2118474_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291513.1|2118482_2118743_-	DUF1108 family protein	NA	A0A0H3U2T6	Staphylococcus_phage	100.0	6.8e-44
WP_001549178.1|2118782_2119043_-	DUF2482 family protein	NA	A0A0H3U2W4	Staphylococcus_phage	100.0	9.3e-41
WP_001285960.1|2119137_2119299_-	DUF1270 domain-containing protein	NA	A0A0H3U4Y7	Staphylococcus_phage	100.0	3.8e-21
WP_001120199.1|2119295_2119616_-	DUF771 domain-containing protein	NA	A0A0H3U4C3	Staphylococcus_phage	100.0	1.5e-56
WP_000549548.1|2119674_2119905_+	hypothetical protein	NA	A0A0H3U2T9	Staphylococcus_phage	100.0	9.4e-37
WP_001148642.1|2120093_2120846_-	oxidoreductase	NA	A0A0H3U319	Staphylococcus_phage	100.0	5.6e-139
WP_000180411.1|2120896_2121226_+	hypothetical protein	NA	A0A0H3U4Z1	Staphylococcus_phage	100.0	4.6e-53
WP_001025404.1|2121214_2121430_-	DUF2829 domain-containing protein	NA	A0A0H3U4C7	Staphylococcus_phage	100.0	4.8e-35
WP_000854072.1|2121445_2121709_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|2121705_2121879_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|2121841_2122555_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|2122570_2123503_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|2123508_2123850_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705246.1|2124053_2124236_+	hypothetical protein	NA	A0A0H3U4Z4	Staphylococcus_phage	100.0	4.1e-27
WP_001549185.1|2124313_2125027_+	toxin MazF	NA	A0A1X9H026	Staphylococcus_phage	100.0	5.0e-129
WP_000857199.1|2125217_2126255_+|integrase	site-specific integrase	integrase	A0A1X9H022	Staphylococcus_phage	99.7	3.8e-178
WP_138642985.1|2127373_2128390_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	27.8	1.5e-25
2127451:2127468	attR	ATAATTTTTCTTCTTTTT	NA	NA	NA	NA
WP_000791407.1|2128411_2129467_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206638.1|2129901_2131125_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_000812008.1|2131496_2132342_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|2132403_2133315_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|2133475_2134783_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000022887.1|2135635_2136079_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_138642987.1|2136243_2136621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_031806879.1|2136938_2137529_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.2	3.2e-97
WP_000128898.1|2137525_2137738_-	hypothetical protein	NA	Q4ZE86	Staphylococcus_phage	74.3	1.1e-23
WP_000240645.1|2138439_2140056_-	chaperonin GroEL	NA	A0A240F779	uncultured_virus	54.7	3.4e-157
WP_000917289.1|2140164_2140449_-	co-chaperone GroES	NA	A0A221S386	uncultured_virus	46.2	4.7e-14
WP_000197635.1|2140623_2141367_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 1
NZ_CP040621	Staphylococcus aureus strain J01 plasmid pJ01-02, complete sequence	27068	8304	16013	27068	transposase	Staphylococcus_phage(42.86%)	9	NA	NA
WP_000793446.1|8304_9234_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	1.0e-41
WP_000369394.1|9226_9964_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000505741.1|9977_10181_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001105956.1|10210_10885_+|transposase	IS6 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	98.7	2.6e-127
WP_000627289.1|11657_12188_+	streptothricin N-acetyltransferase Sat4	NA	A0A1B0RXL7	Streptococcus_phage	97.8	1.3e-89
WP_001096887.1|12280_13075_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_078154339.1|13706_13922_+	WYL domain-containing protein	NA	E4ZFP5	Streptococcus_phage	98.6	3.4e-33
WP_001105991.1|14090_14765_-|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9SKD3	Staphylococcus_phage	99.6	6.8e-128
WP_000690637.1|15434_16013_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	4.9e-42
