assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	1	413154-413254	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|128aa|up_8|NZ_CP040619.1_405760_406144_-,NA|98aa|up_6|NZ_CP040619.1_407097_407391_-,NA|34aa|up_1|NZ_CP040619.1_412378_412480_+,NA|86aa|up_0|NZ_CP040619.1_412687_412945_-,NA|221aa|down_1|NZ_CP040619.1_414344_415007_-,NA|179aa|down_7|NZ_CP040619.1_421098_421635_-	NA|194aa|up_9|NZ_CP040619.1_405113_405695_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP040619.1_405760_406144_-	NA	NA|209aa|up_7|NZ_CP040619.1_406398_407025_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_6|NZ_CP040619.1_407097_407391_-	NA	NA|508aa|up_5|NZ_CP040619.1_407469_408993_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_4|NZ_CP040619.1_409008_409578_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_3|NZ_CP040619.1_410069_410825_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_2|NZ_CP040619.1_410905_412294_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_1|NZ_CP040619.1_412378_412480_+	NA	NA|86aa|up_0|NZ_CP040619.1_412687_412945_-	NA	NA|319aa|down_0|NZ_CP040619.1_413270_414227_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP040619.1_414344_415007_-	NA	NA|136aa|down_2|NZ_CP040619.1_415149_415557_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP040619.1_416069_416648_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP040619.1_416647_417916_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP040619.1_417953_419420_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP040619.1_419444_420986_+	PRK00074, guaA, GMP synthase; Reviewed	NA|179aa|down_7|NZ_CP040619.1_421098_421635_-	NA	NA|235aa|down_8|NZ_CP040619.1_422027_422732_-	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|91aa|down_9|NZ_CP040619.1_423130_423403_-	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	2	656214-656306	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_4|NZ_CP040619.1_652697_652805_+,NA|117aa|up_1|NZ_CP040619.1_654916_655267_-,NA|169aa|down_4|NZ_CP040619.1_660053_660560_+,NA|239aa|down_5|NZ_CP040619.1_660721_661438_+	NA|179aa|up_9|NZ_CP040619.1_648048_648585_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_8|NZ_CP040619.1_648753_649230_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_7|NZ_CP040619.1_649269_650565_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_6|NZ_CP040619.1_650592_651114_+	pfam08741, YwhD, YwhD family	NA|337aa|up_5|NZ_CP040619.1_651612_652623_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_4|NZ_CP040619.1_652697_652805_+	NA	NA|128aa|up_3|NZ_CP040619.1_652930_653314_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_2|NZ_CP040619.1_653310_654972_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|117aa|up_1|NZ_CP040619.1_654916_655267_-	NA	NA|212aa|up_0|NZ_CP040619.1_655360_655996_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP040619.1_656434_657262_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP040619.1_657409_658360_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP040619.1_658414_659134_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP040619.1_659117_659918_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP040619.1_660053_660560_+	NA	NA|239aa|down_5|NZ_CP040619.1_660721_661438_+	NA	NA|263aa|down_6|NZ_CP040619.1_661606_662395_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP040619.1_662645_663020_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP040619.1_663967_664897_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP040619.1_665091_665316_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	3	772362-772444	3	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCAATTTCTACAGACAATGCAAGTTGG	27	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|69aa|up_9|NZ_CP040619.1_758962_759169_+,NA|34aa|down_1|NZ_CP040619.1_773900_774002_+,NA|82aa|down_3|NZ_CP040619.1_775650_775896_-,NA|89aa|down_6|NZ_CP040619.1_777696_777963_+	NA|69aa|up_9|NZ_CP040619.1_758962_759169_+	NA	NA|237aa|up_8|NZ_CP040619.1_759256_759967_+	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|335aa|up_7|NZ_CP040619.1_759950_760955_+	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism]	NA|647aa|up_6|NZ_CP040619.1_761428_763369_+	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane]	NA|628aa|up_5|NZ_CP040619.1_763639_765523_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|594aa|up_4|NZ_CP040619.1_765534_767316_+	TIGR01389, recQ, ATP-dependent DNA helicase RecQ	NA|326aa|up_3|NZ_CP040619.1_767537_768515_+	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]	NA|505aa|up_2|NZ_CP040619.1_768507_770022_+	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold	NA|353aa|up_1|NZ_CP040619.1_770261_771320_+	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional	NA|181aa|up_0|NZ_CP040619.1_771670_772213_+	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]	NA|306aa|down_0|NZ_CP040619.1_772892_773810_-	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only]	NA|34aa|down_1|NZ_CP040619.1_773900_774002_+	NA	NA|502aa|down_2|NZ_CP040619.1_774079_775585_-	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism]	NA|82aa|down_3|NZ_CP040619.1_775650_775896_-	NA	NA|167aa|down_4|NZ_CP040619.1_775925_776426_-	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only]	NA|289aa|down_5|NZ_CP040619.1_776445_777312_-	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|89aa|down_6|NZ_CP040619.1_777696_777963_+	NA	NA|133aa|down_7|NZ_CP040619.1_778112_778511_+	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism]	NA|702aa|down_8|NZ_CP040619.1_778473_780579_+	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|324aa|down_9|NZ_CP040619.1_780696_781668_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	4	862315-862396	4	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	862339-862372|862339-862372	NZ_CP040619.1_1337484-1337451|NZ_CP040619.1_1426637-1426670	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP040619.1_861217_861331_+,NA	NA|206aa|up_9|NZ_CP040619.1_856072_856690_-	COG1279, COG1279, Lysine efflux permease [General function prediction only]	NA|165aa|up_8|NZ_CP040619.1_856844_857339_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|141aa|up_7|NZ_CP040619.1_857737_858160_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP040619.1_858307_859024_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP040619.1_859106_859646_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP040619.1_859795_860116_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP040619.1_860259_860616_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP040619.1_860773_861154_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP040619.1_861217_861331_+	NA	NA|293aa|up_0|NZ_CP040619.1_861332_862211_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP040619.1_862952_863339_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP040619.1_863331_863628_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP040619.1_863877_864903_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP040619.1_864895_865591_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP040619.1_865608_866430_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP040619.1_866783_866978_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP040619.1_867210_868062_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP040619.1_868389_869151_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP040619.1_869248_870556_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP040619.1_870670_871912_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	5	1044774-1044861	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP040619.1_1044650_1044770_+,NA|45aa|down_0|NZ_CP040619.1_1044870_1045005_-,NA|432aa|down_1|NZ_CP040619.1_1045156_1046452_+,NA|68aa|down_2|NZ_CP040619.1_1046472_1046676_-	NA|730aa|up_9|NZ_CP040619.1_1033228_1035418_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP040619.1_1035396_1036881_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP040619.1_1036873_1037902_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP040619.1_1037904_1038471_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP040619.1_1038485_1039964_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP040619.1_1039985_1041233_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP040619.1_1041497_1042304_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP040619.1_1042296_1043697_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP040619.1_1043711_1044287_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP040619.1_1044650_1044770_+	NA	NA|45aa|down_0|NZ_CP040619.1_1044870_1045005_-	NA	NA|432aa|down_1|NZ_CP040619.1_1045156_1046452_+	NA	NA|68aa|down_2|NZ_CP040619.1_1046472_1046676_-	NA	NA|391aa|down_3|NZ_CP040619.1_1046876_1048049_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_4|NZ_CP040619.1_1048102_1048645_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_5|NZ_CP040619.1_1048798_1049065_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_6|NZ_CP040619.1_1049067_1050786_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_7|NZ_CP040619.1_1051022_1051256_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_8|NZ_CP040619.1_1051453_1052815_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_9|NZ_CP040619.1_1052811_1053831_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	6	1129287-1129372	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	6	1129317-1129342|1129317-1129342|1129317-1129342|1129317-1129342|1129317-1129342|1129317-1129342	NZ_CP040619.1_818752-818727|NZ_CP040619.1_818808-818783|NZ_CP040619.1_818864-818839|NZ_CP040619.1_2827382-2827357|NZ_CP040619.1_2827438-2827413|NZ_CP040619.1_2827494-2827469	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|169aa|up_8|NZ_CP040619.1_1122982_1123489_+,NA|62aa|up_5|NZ_CP040619.1_1125570_1125756_-,NA|83aa|up_4|NZ_CP040619.1_1125965_1126214_-,NA|78aa|up_3|NZ_CP040619.1_1126377_1126611_-,NA|49aa|up_1|NZ_CP040619.1_1128719_1128866_+,NA|75aa|up_0|NZ_CP040619.1_1128822_1129047_+,NA|76aa|down_6|NZ_CP040619.1_1136346_1136574_+	NA|134aa|up_9|NZ_CP040619.1_1121909_1122311_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|169aa|up_8|NZ_CP040619.1_1122982_1123489_+	NA	NA|166aa|up_7|NZ_CP040619.1_1123747_1124245_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_6|NZ_CP040619.1_1124398_1124749_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|62aa|up_5|NZ_CP040619.1_1125570_1125756_-	NA	NA|83aa|up_4|NZ_CP040619.1_1125965_1126214_-	NA	NA|78aa|up_3|NZ_CP040619.1_1126377_1126611_-	NA	NA|320aa|up_2|NZ_CP040619.1_1127087_1128047_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP040619.1_1128719_1128866_+	NA	NA|75aa|up_0|NZ_CP040619.1_1128822_1129047_+	NA	NA|239aa|down_0|NZ_CP040619.1_1129547_1130264_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP040619.1_1130371_1131097_-	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|242aa|down_2|NZ_CP040619.1_1131191_1131917_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_3|NZ_CP040619.1_1132354_1133356_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_4|NZ_CP040619.1_1133378_1134311_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_5|NZ_CP040619.1_1134533_1136039_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_6|NZ_CP040619.1_1136346_1136574_+	NA	NA|316aa|down_7|NZ_CP040619.1_1136878_1137826_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_8|NZ_CP040619.1_1138074_1138263_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_9|NZ_CP040619.1_1139174_1139309_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	7	1828543-1828752	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	NNNAATAATGTGCAAGTTGGGGTAAGGGCCCCAACACAGA	40	3	32	1828580-1828601|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828639-1828656|1828694-1828715	NZ_CP040619.1_1828521-1828542|NZ_CP040619.1_813301-813284|NZ_CP040619.1_813356-813339|NZ_CP040619.1_819017-819000|NZ_CP040619.1_819075-819058|NZ_CP040619.1_862412-862395|NZ_CP040619.1_930801-930784|NZ_CP040619.1_1054776-1054759|NZ_CP040619.1_1426769-1426752|NZ_CP040619.1_1649939-1649922|NZ_CP040619.1_2029681-2029664|NZ_CP040619.1_2827532-2827515|NZ_CP040619.1_146778-146795|NZ_CP040619.1_293260-293277|NZ_CP040619.1_374623-374640|NZ_CP040619.1_374678-374695|NZ_CP040619.1_1337352-1337369|NZ_CP040619.1_1828466-1828483|NZ_CP040619.1_826461-826444|NZ_CP040619.1_1341791-1341774|NZ_CP040619.1_1386697-1386680|NZ_CP040619.1_1683905-1683888|NZ_CP040619.1_2039030-2039013|NZ_CP040619.1_2387392-2387375|NZ_CP040619.1_293315-293332|NZ_CP040619.1_1129222-1129239|NZ_CP040619.1_2578822-2578839|NZ_CP040619.1_1758836-1758819|NZ_CP040619.1_327269-327286|NZ_CP040619.1_786264-786281|NZ_CP040619.1_1866540-1866557|NZ_CP040619.1_1828521-1828542	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|199aa|up_9|NZ_CP040619.1_1819060_1819657_-	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed	NA|286aa|up_8|NZ_CP040619.1_1819685_1820543_-	PRK13668, PRK13668, hypothetical protein; Provisional	NA|104aa|up_7|NZ_CP040619.1_1820642_1820954_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|359aa|up_6|NZ_CP040619.1_1821018_1822095_-	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|up_5|NZ_CP040619.1_1822181_1822493_+	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|281aa|up_4|NZ_CP040619.1_1822618_1823461_-	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|215aa|up_3|NZ_CP040619.1_1823930_1824575_-	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|264aa|up_2|NZ_CP040619.1_1824589_1825381_-	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|283aa|up_1|NZ_CP040619.1_1825930_1826779_-	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|470aa|up_0|NZ_CP040619.1_1826782_1828192_-	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|141aa|down_0|NZ_CP040619.1_1829055_1829478_-	pfam12732, YtxH, YtxH-like protein	NA|232aa|down_1|NZ_CP040619.1_1829494_1830190_-	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|554aa|down_2|NZ_CP040619.1_1830186_1831848_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|423aa|down_3|NZ_CP040619.1_1832254_1833523_+	pfam03486, HI0933_like, HI0933-like protein	NA|2187aa|down_4|NZ_CP040619.1_1833639_1840200_-	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|104aa|down_5|NZ_CP040619.1_1840525_1840837_-	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|806aa|down_6|NZ_CP040619.1_1840858_1843276_-	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|394aa|down_7|NZ_CP040619.1_1843563_1844745_-	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|318aa|down_8|NZ_CP040619.1_1844854_1845808_+	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|188aa|down_9|NZ_CP040619.1_1845804_1846368_+	pfam06962, rRNA_methylase, Putative rRNA methylase
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	8	1951682-1951809	7	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AATTATGGAGCGGAAGATAGGATTTACACCTATACCTC	38	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|132aa|up_9|NZ_CP040619.1_1942266_1942662_-,NA|51aa|up_8|NZ_CP040619.1_1943438_1943591_-,NA|38aa|up_0|NZ_CP040619.1_1951447_1951561_+,NA|31aa|down_5|NZ_CP040619.1_1964598_1964691_-	NA|132aa|up_9|NZ_CP040619.1_1942266_1942662_-	NA	NA|51aa|up_8|NZ_CP040619.1_1943438_1943591_-	NA	NA|200aa|up_7|NZ_CP040619.1_1943615_1944215_-	COG0363, NagB, 6-phosphogluconolactonase/Glucosamine-6-phosphate isomerase/deaminase [Carbohydrate transport and metabolism]	NA|157aa|up_6|NZ_CP040619.1_1944373_1944844_-	COG0219, CspR, Predicted rRNA methylase (SpoU class) [Translation, ribosomal structure and biogenesis]	NA|381aa|up_5|NZ_CP040619.1_1944848_1945991_-	TIGR00276, iron-sulfur_cluster-binding_protein, epoxyqueuosine reductase	NA|243aa|up_4|NZ_CP040619.1_1946126_1946855_-	COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]	NA|486aa|up_3|NZ_CP040619.1_1946841_1948299_-	COG0765, HisM, ABC-type amino acid transport system, permease component [Amino acid transport and metabolism]	NA|354aa|up_2|NZ_CP040619.1_1948556_1949618_-	COG3641, PfoR, Predicted membrane protein, putative toxin regulator [General function prediction only]	NA|454aa|up_1|NZ_CP040619.1_1950110_1951472_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|38aa|up_0|NZ_CP040619.1_1951447_1951561_+	NA	NA|149aa|down_0|NZ_CP040619.1_1959797_1960244_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|317aa|down_1|NZ_CP040619.1_1960340_1961291_-	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family	NA|152aa|down_2|NZ_CP040619.1_1961296_1961752_-	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]	NA|430aa|down_3|NZ_CP040619.1_1961832_1963122_+	PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional	NA|365aa|down_4|NZ_CP040619.1_1963414_1964509_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|31aa|down_5|NZ_CP040619.1_1964598_1964691_-	NA	NA|579aa|down_6|NZ_CP040619.1_1964699_1966436_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|181aa|down_7|NZ_CP040619.1_1966726_1967269_-	PRK13662, PRK13662, hypothetical protein; Provisional	NA|346aa|down_8|NZ_CP040619.1_1967570_1968608_-	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair]	NA|326aa|down_9|NZ_CP040619.1_1968759_1969737_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	9	2263282-2263371	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP040619.1_2258154_2258385_-,NA|364aa|up_0|NZ_CP040619.1_2262173_2263265_+,NA|35aa|down_0|NZ_CP040619.1_2263707_2263812_-,NA|31aa|down_2|NZ_CP040619.1_2265923_2266016_+	NA|237aa|up_9|NZ_CP040619.1_2253764_2254475_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP040619.1_2254595_2255039_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP040619.1_2255238_2255652_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP040619.1_2256109_2257483_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP040619.1_2258154_2258385_-	NA	NA|313aa|up_4|NZ_CP040619.1_2258415_2259354_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP040619.1_2259788_2260454_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP040619.1_2260605_2260926_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP040619.1_2260927_2261908_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP040619.1_2262173_2263265_+	NA	NA|35aa|down_0|NZ_CP040619.1_2263707_2263812_-	NA	NA|379aa|down_1|NZ_CP040619.1_2264498_2265635_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP040619.1_2265923_2266016_+	NA	NA|286aa|down_3|NZ_CP040619.1_2266720_2267578_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP040619.1_2267645_2268428_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP040619.1_2268659_2270465_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP040619.1_2271145_2272684_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP040619.1_2272718_2274851_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP040619.1_2274862_2275297_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP040619.1_2275296_2276403_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_005889995.1_ASM588999v1	NZ_CP040619	Staphylococcus aureus strain J01 chromosome, complete genome	10	2387393-2387473	9	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TCTATGTTGGGGCCCCGCCAACTTG	25	1	11	2387418-2387448|2387418-2387448|2387418-2387448|2387418-2387448|2387418-2387448|2387418-2387448|2387418-2387448|2387418-2387448|2387418-2387448|2387418-2387448|2387418-2387448	NZ_CP040619.1_818705-818735|NZ_CP040619.1_818761-818791|NZ_CP040619.1_818817-818847|NZ_CP040619.1_818873-818903|NZ_CP040619.1_1028492-1028522|NZ_CP040619.1_2028253-2028283|NZ_CP040619.1_2664266-2664296|NZ_CP040619.1_2827447-2827477|NZ_CP040619.1_374539-374509|NZ_CP040619.1_1129308-1129278|NZ_CP040619.1_1337440-1337410	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP040619.1_2377923_2378088_+,NA|106aa|up_8|NZ_CP040619.1_2378332_2378650_+,NA|84aa|up_5|NZ_CP040619.1_2383774_2384026_+,NA|57aa|up_0|NZ_CP040619.1_2387165_2387336_+,NA	NA|55aa|up_9|NZ_CP040619.1_2377923_2378088_+	NA	NA|106aa|up_8|NZ_CP040619.1_2378332_2378650_+	NA	NA|1056aa|up_7|NZ_CP040619.1_2378836_2382004_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP040619.1_2382120_2383386_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP040619.1_2383774_2384026_+	NA	NA|255aa|up_4|NZ_CP040619.1_2384017_2384782_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP040619.1_2384943_2385384_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP040619.1_2385376_2386588_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP040619.1_2386689_2387040_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP040619.1_2387165_2387336_+	NA	NA|341aa|down_0|NZ_CP040619.1_2387616_2388639_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP040619.1_2388658_2389258_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP040619.1_2389264_2389498_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP040619.1_2389503_2389950_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP040619.1_2389963_2390449_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP040619.1_2390445_2391705_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP040619.1_2391767_2392262_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP040619.1_2392263_2392770_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP040619.1_2392800_2393805_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP040619.1_2393974_2394580_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
