assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005952885.1_ASM595288v1	NZ_CP040706	Enterococcus faecium strain HOU503 chromosome, complete genome	1	1225801-1225910	1	CRISPRCasFinder	no		cas2,RT,DinG,cas3,DEDDh,csa3,cas14j	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	cas2,RT,DinG,cas3,DEDDh,csa3,cas14j	NA,NA	NA|720aa|up_9|NZ_CP040706.1_1213340_1215500_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP040706.1_1215549_1216515_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP040706.1_1216603_1217743_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP040706.1_1218051_1218765_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP040706.1_1219018_1219720_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP040706.1_1219953_1221486_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|303aa|up_3|NZ_CP040706.1_1221875_1222784_-	pfam13612, DDE_Tnp_1_3, Transposase DDE domain	NA|230aa|up_2|NZ_CP040706.1_1224008_1224698_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP040706.1_1224803_1225172_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP040706.1_1225224_1225728_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP040706.1_1226137_1226827_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP040706.1_1226930_1227353_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP040706.1_1227695_1228364_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP040706.1_1228376_1229249_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP040706.1_1229339_1230359_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NZ_CP040706.1_1230531_1231419_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP040706.1_1231495_1232041_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP040706.1_1232141_1232312_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP040706.1_1232335_1232488_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP040706.1_1232649_1233294_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_005952885.1_ASM595288v1	NZ_CP040706	Enterococcus faecium strain HOU503 chromosome, complete genome	2	1632450-1632636	1	PILER-CR	no	RT	cas2,RT,DinG,cas3,DEDDh,csa3,cas14j	Unclear	TTTTCTCGTACATCTACCGTTC	22	3	3	1632472-1632506|1632529-1632557|1632580-1632614	NZ_CP040706.1_1632688-1632722|NZ_CP040706.1_1632637-1632665|NZ_CP040706.1_1632688-1632722	NA	3	3	Orphan	cas2,RT,DinG,cas3,DEDDh,csa3,cas14j	NA|258aa|up_8|NZ_CP040706.1_1625683_1626457_+,NA|105aa|up_6|NZ_CP040706.1_1627032_1627347_-,NA|116aa|up_4|NZ_CP040706.1_1629137_1629485_-,NA|101aa|up_3|NZ_CP040706.1_1629477_1629780_-,NA|204aa|up_1|NZ_CP040706.1_1631371_1631983_-,NA|63aa|up_0|NZ_CP040706.1_1631994_1632183_-,NA|73aa|down_0|NZ_CP040706.1_1634828_1635047_-,NA|109aa|down_2|NZ_CP040706.1_1636246_1636573_-	NA|82aa|up_9|NZ_CP040706.1_1625333_1625579_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|258aa|up_8|NZ_CP040706.1_1625683_1626457_+	NA	NA|83aa|up_7|NZ_CP040706.1_1626685_1626934_-	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system	NA|105aa|up_6|NZ_CP040706.1_1627032_1627347_-	NA	NA|425aa|up_5|NZ_CP040706.1_1627803_1629078_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|116aa|up_4|NZ_CP040706.1_1629137_1629485_-	NA	NA|101aa|up_3|NZ_CP040706.1_1629477_1629780_-	NA	NA|464aa|up_2|NZ_CP040706.1_1629995_1631387_-	pfam03432, Relaxase, Relaxase/Mobilisation nuclease domain	NA|204aa|up_1|NZ_CP040706.1_1631371_1631983_-	NA	NA|63aa|up_0|NZ_CP040706.1_1631994_1632183_-	NA	NA|73aa|down_0|NZ_CP040706.1_1634828_1635047_-	NA	NA|348aa|down_1|NZ_CP040706.1_1635048_1636092_-	pfam06970, RepA_N, Replication initiator protein A (RepA) N-terminus	NA|109aa|down_2|NZ_CP040706.1_1636246_1636573_-	NA	NA|68aa|down_3|NZ_CP040706.1_1636580_1636784_-	COG1476, COG1476, Predicted transcriptional regulators [Transcription]	NA|217aa|down_4|NZ_CP040706.1_1636858_1637509_+	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|389aa|down_5|NZ_CP040706.1_1637563_1638730_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|131aa|down_6|NZ_CP040706.1_1638818_1639211_-	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|148aa|down_7|NZ_CP040706.1_1639226_1639670_-	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|156aa|down_8|NZ_CP040706.1_1640188_1640656_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|513aa|down_9|NZ_CP040706.1_1640775_1642314_-	cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases
GCF_005952885.1_ASM595288v1	NZ_CP040704	Enterococcus faecium strain HOU503 plasmid p1, complete sequence	1	67305-67432	1	CRISPRCasFinder	no	cas14j	csa3,cas14j	Unclear	TCAGAGGGTATGAAAATCATACC	23	0	0	NA	NA	NA	2	2	TypeV	cas2,RT,DinG,cas3,DEDDh,csa3,cas14j	NA|60aa|up_8|NZ_CP040704.1_57629_57809_-,NA|70aa|up_7|NZ_CP040704.1_58702_58912_-,NA|111aa|down_0|NZ_CP040704.1_68739_69072_+,NA|97aa|down_2|NZ_CP040704.1_70050_70341_+,NA|78aa|down_3|NZ_CP040704.1_70532_70766_+	NA|202aa|up_9|NZ_CP040704.1_56978_57584_+	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain	NA|60aa|up_8|NZ_CP040704.1_57629_57809_-	NA	NA|70aa|up_7|NZ_CP040704.1_58702_58912_-	NA	NA|320aa|up_6|NZ_CP040704.1_58972_59932_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|72aa|up_5|NZ_CP040704.1_60082_60298_+	pfam01721, Bacteriocin_II, Class II bacteriocin	NA|114aa|up_4|NZ_CP040704.1_60298_60640_+	pfam08951, EntA_Immun, Enterocin A Immunity	NA|388aa|up_3|NZ_CP040704.1_60783_61946_-	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|432aa|up_2|NZ_CP040704.1_62302_63598_+	pfam01610, DDE_Tnp_ISL3, Transposase	NA|106aa|up_1|NZ_CP040704.1_64012_64330_-	pfam05016, ParE_toxin, ParE toxin of type II toxin-antitoxin system, parDE	NA|85aa|up_0|NZ_CP040704.1_64330_64585_-	TIGR02609, hypothetical_protein_XAC1195, putative addiction module antidote	NA|111aa|down_0|NZ_CP040704.1_68739_69072_+	NA	NA|114aa|down_1|NZ_CP040704.1_69690_70032_+	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|97aa|down_2|NZ_CP040704.1_70050_70341_+	NA	NA|78aa|down_3|NZ_CP040704.1_70532_70766_+	NA	NA|224aa|down_4|NZ_CP040704.1_71185_71857_+	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|543aa|down_5|NZ_CP040704.1_71909_73538_+	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|134aa|down_6|NZ_CP040704.1_74046_74448_+	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|373aa|down_7|NZ_CP040704.1_74471_75590_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|252aa|down_8|NZ_CP040704.1_76033_76789_+	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|276aa|down_9|NZ_CP040704.1_76785_77613_+	PRK11907, PRK11907, bifunctional 2',3'-cyclic-nucleotide 2'-phosphodiesterase/3'-nucleotidase
