assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	1	187563-187703	1	CRISPRCasFinder	no		PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Orphan	CACGCCGCATCCGCCAGTGGCGCGGTGCAGATGCCGGATGC	41	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA,NA|357aa|down_1|NZ_CP040667.1_190157_191228_-	NA|184aa|up_9|NZ_CP040667.1_177284_177836_+	pfam10688, Imp-YgjV, Bacterial inner membrane protein	NA|415aa|up_8|NZ_CP040667.1_177840_179085_-	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional	NA|322aa|up_7|NZ_CP040667.1_179483_180449_-	TIGR03718, R_switched_Alx, integral membrane protein, TerC family	NA|329aa|up_6|NZ_CP040667.1_180731_181718_-	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only]	NA|231aa|up_5|NZ_CP040667.1_181796_182489_-	COG2949, SanA, Uncharacterized membrane protein [Function unknown]	NA|168aa|up_4|NZ_CP040667.1_182565_183069_-	COG1451, COG1451, Predicted metal-dependent hydrolase [General function prediction only]	NA|379aa|up_3|NZ_CP040667.1_183153_184290_+	PRK15001, PRK15001, 23S rRNA (guanine(1835)-N(2))-methyltransferase RlmG	NA|105aa|up_2|NZ_CP040667.1_184573_184888_+	COG4680, COG4680, Uncharacterized protein conserved in bacteria [Function unknown]	NA|139aa|up_1|NZ_CP040667.1_184884_185301_+	COG5499, COG5499, Predicted transcription regulator containing HTH domain [Transcription]	NA|673aa|up_0|NZ_CP040667.1_185345_187364_-	cd02930, DCR_FMN, 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain	NA|784aa|down_0|NZ_CP040667.1_187789_190141_-	PRK10137, PRK10137, alpha-glucosidase; Provisional	NA|357aa|down_1|NZ_CP040667.1_190157_191228_-	NA	NA|478aa|down_2|NZ_CP040667.1_191361_192795_-	PRK15238, PRK15238, inner membrane transporter YjeM; Provisional	NA|150aa|down_3|NZ_CP040667.1_192857_193307_-	PRK10202, ebgC, beta-galactosidase subunit beta	NA|1031aa|down_4|NZ_CP040667.1_193303_196396_-	PRK10340, ebgA, cryptic beta-D-galactosidase subunit alpha; Reviewed	NA|328aa|down_5|NZ_CP040667.1_196579_197563_-	PRK10339, PRK10339, DNA-binding transcriptional repressor EbgR; Provisional	NA|111aa|down_6|NZ_CP040667.1_197781_198114_+	PRK10089, PRK10089, chaperone CsaA	NA|497aa|down_7|NZ_CP040667.1_198155_199646_-	PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional	NA|507aa|down_8|NZ_CP040667.1_199952_201473_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|208aa|down_9|NZ_CP040667.1_201626_202250_-	COG1695, COG1695, Predicted transcriptional regulators [Transcription]
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	2	514621-515014	1,2,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,28,28	0	0	NA	NA	I-E:I-E:I-E	6,6,6	6	Unclear	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA|47aa|up_1|NZ_CP040667.1_513330_513471_-,NA	NA|434aa|up_9|NZ_CP040667.1_504027_505329_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP040667.1_505376_507611_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP040667.1_507688_507937_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP040667.1_507936_508272_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP040667.1_508342_509134_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP040667.1_509361_510999_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP040667.1_511086_512385_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP040667.1_512444_513317_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP040667.1_513330_513471_-	NA	NA|224aa|up_0|NZ_CP040667.1_513609_514281_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP040667.1_515653_517132_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP040667.1_517158_518436_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP040667.1_518754_519540_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP040667.1_519609_521064_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP040667.1_521157_522495_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP040667.1_522472_523252_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP040667.1_523248_524109_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP040667.1_524256_524832_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP040667.1_524848_525109_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP040667.1_525099_526371_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	3	540565-541327	2,3,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,12,12	12	TypeI-E	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA,NA	NA|571aa|up_9|NZ_CP040667.1_528928_530641_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP040667.1_530715_531450_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP040667.1_531808_534475_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|503aa|up_6|NZ_CP040667.1_534889_536398_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP040667.1_536390_536873_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP040667.1_536885_537977_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP040667.1_537979_538654_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP040667.1_538640_539240_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP040667.1_539255_540173_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP040667.1_540174_540459_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP040667.1_541409_542447_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP040667.1_542698_543607_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP040667.1_543608_545036_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP040667.1_545035_545641_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP040667.1_545690_546014_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP040667.1_546207_546519_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP040667.1_546537_547248_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP040667.1_547247_547727_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP040667.1_547723_548773_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP040667.1_548753_549515_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	4	1066826-1066943	4	CRISPRCasFinder	no		PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA,NA	NA|62aa|up_9|NZ_CP040667.1_1056111_1056297_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP040667.1_1056309_1057209_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP040667.1_1057401_1058592_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP040667.1_1058588_1059848_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP040667.1_1059837_1061466_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP040667.1_1061738_1063097_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP040667.1_1063101_1064178_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP040667.1_1064640_1065291_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP040667.1_1065344_1065599_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP040667.1_1065598_1066729_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP040667.1_1066962_1069248_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP040667.1_1069943_1073696_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP040667.1_1073823_1074546_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP040667.1_1074692_1077320_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP040667.1_1077468_1079157_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP040667.1_1079153_1079777_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|550aa|down_6|NZ_CP040667.1_1084315_1085965_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_7|NZ_CP040667.1_1085969_1086746_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_8|NZ_CP040667.1_1086819_1088004_-	PRK05790, PRK05790, putative acyltransferase; Provisional	NA|441aa|down_9|NZ_CP040667.1_1088034_1089357_-	pfam02667, SCFA_trans, Short chain fatty acid transporter
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	5	1669167-1669290	5	CRISPRCasFinder	no	DEDDh	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA,NA|30aa|down_7|NZ_CP040667.1_1678186_1678276_+	NA|471aa|up_9|NZ_CP040667.1_1658621_1660034_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP040667.1_1660590_1660800_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP040667.1_1661254_1661881_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP040667.1_1661901_1664004_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP040667.1_1664007_1664655_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP040667.1_1664718_1665387_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP040667.1_1665383_1666169_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP040667.1_1666172_1666985_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP040667.1_1666996_1668601_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP040667.1_1668726_1669032_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP040667.1_1669604_1670861_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP040667.1_1670901_1672275_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP040667.1_1672489_1673131_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP040667.1_1673170_1674319_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP040667.1_1674609_1675821_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP040667.1_1675933_1676866_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP040667.1_1676862_1677888_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP040667.1_1678186_1678276_+	NA	NA|390aa|down_8|NZ_CP040667.1_1678441_1679611_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP040667.1_1679772_1680354_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	6	2344685-2344776	6	CRISPRCasFinder	no		PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA|60aa|up_7|NZ_CP040667.1_2338844_2339024_-,NA	NA|1321aa|up_9|NZ_CP040667.1_2334025_2337988_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_8|NZ_CP040667.1_2338027_2338666_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|60aa|up_7|NZ_CP040667.1_2338844_2339024_-	NA	NA|364aa|up_6|NZ_CP040667.1_2338953_2340045_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP040667.1_2340044_2340737_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP040667.1_2340748_2341135_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP040667.1_2341142_2341943_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP040667.1_2341952_2342543_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP040667.1_2342553_2343048_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP040667.1_2343068_2344397_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP040667.1_2345199_2345796_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP040667.1_2345816_2346044_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP040667.1_2346081_2347323_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP040667.1_2347615_2348872_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP040667.1_2349132_2350053_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP040667.1_2350052_2350358_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP040667.1_2350509_2351109_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP040667.1_2351105_2353652_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP040667.1_2353651_2354824_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP040667.1_2354953_2355646_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	7	2606976-2607120	7	CRISPRCasFinder	no		PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA,NA	NA|330aa|up_9|NZ_CP040667.1_2594874_2595864_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP040667.1_2596260_2597169_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP040667.1_2597360_2599382_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP040667.1_2599960_2600638_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP040667.1_2600630_2601386_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP040667.1_2601372_2602527_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP040667.1_2602523_2603564_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP040667.1_2603650_2604940_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP040667.1_2604998_2605475_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP040667.1_2605626_2606910_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP040667.1_2607143_2609405_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP040667.1_2609587_2611021_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP040667.1_2611096_2612149_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP040667.1_2612332_2613286_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP040667.1_2613326_2614322_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP040667.1_2614476_2615295_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP040667.1_2615295_2616354_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP040667.1_2616356_2617046_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP040667.1_2617045_2617819_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP040667.1_2617985_2618135_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	8	2851282-2851378	8	CRISPRCasFinder	no		PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA,NA	NA|231aa|up_9|NZ_CP040667.1_2843077_2843770_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP040667.1_2843989_2844532_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP040667.1_2845002_2845869_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP040667.1_2845870_2846083_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP040667.1_2846190_2846712_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP040667.1_2846747_2848133_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP040667.1_2848306_2848801_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP040667.1_2848803_2849526_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP040667.1_2849643_2850153_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP040667.1_2850149_2851217_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP040667.1_2851411_2852305_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP040667.1_2852301_2853117_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP040667.1_2853127_2854387_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP040667.1_2854396_2856064_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP040667.1_2856380_2857430_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP040667.1_2857451_2858687_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP040667.1_2858697_2859483_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP040667.1_2859710_2860856_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP040667.1_2860877_2862179_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP040667.1_2862235_2863597_-	PRK08044, PRK08044, allantoinase AllB
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	9	2991524-2991668	9	CRISPRCasFinder	no		PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA,NA|28aa|down_2|NZ_CP040667.1_2993713_2993797_-	NA|357aa|up_9|NZ_CP040667.1_2976662_2977733_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP040667.1_2977825_2978407_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP040667.1_2978411_2980229_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP040667.1_2980384_2981758_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP040667.1_2981833_2983153_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP040667.1_2983559_2984855_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP040667.1_2984912_2985602_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP040667.1_2985791_2986994_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP040667.1_2986990_2990137_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP040667.1_2990262_2991447_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP040667.1_2991691_2992600_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP040667.1_2992724_2993636_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP040667.1_2993713_2993797_-	NA	NA|95aa|down_3|NZ_CP040667.1_2994282_2994567_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP040667.1_2994638_2995316_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP040667.1_2995573_2995765_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP040667.1_2995814_2996339_-	PRK03731, aroL, shikimate kinase AroL	NA|153aa|down_7|NZ_CP040667.1_2996521_2996980_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP040667.1_2997099_2997909_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP040667.1_2997925_2999041_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	10	3106027-3106166	3	PILER-CR	no	TnsE_C	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA|126aa|up_9|NZ_CP040667.1_3100197_3100575_-,NA|108aa|up_8|NZ_CP040667.1_3100628_3100952_-,NA|124aa|up_7|NZ_CP040667.1_3100984_3101356_-,NA|166aa|up_6|NZ_CP040667.1_3101416_3101914_-,NA|88aa|down_3|NZ_CP040667.1_3110385_3110649_-	NA|126aa|up_9|NZ_CP040667.1_3100197_3100575_-	NA	NA|108aa|up_8|NZ_CP040667.1_3100628_3100952_-	NA	NA|124aa|up_7|NZ_CP040667.1_3100984_3101356_-	NA	NA|166aa|up_6|NZ_CP040667.1_3101416_3101914_-	NA	NA|263aa|up_5|NZ_CP040667.1_3101989_3102778_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_4|NZ_CP040667.1_3102835_3103360_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_3|NZ_CP040667.1_3103454_3103928_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|179aa|up_2|NZ_CP040667.1_3104259_3104796_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP040667.1_3104910_3105237_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP040667.1_3105424_3105664_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|97aa|down_0|NZ_CP040667.1_3106439_3106730_-	pfam17509, DUF5440, Family of unknown function (DUF5440)	NA|147aa|down_1|NZ_CP040667.1_3106737_3107178_-	pfam18790, KfrB, KfrB protein	NA|1062aa|down_2|NZ_CP040667.1_3107193_3110379_-	COG4227, COG4227, Antirestriction protein [DNA replication, recombination, and repair]	NA|88aa|down_3|NZ_CP040667.1_3110385_3110649_-	NA	NA|738aa|down_4|NZ_CP040667.1_3110654_3112868_-	PRK07726, PRK07726, DNA topoisomerase 3	NA|178aa|down_5|NZ_CP040667.1_3112882_3113416_-	PRK13884, PRK13884, conjugal transfer peptidase TraF; Provisional	NA|636aa|down_6|NZ_CP040667.1_3113412_3115320_-	PRK13880, PRK13880, conjugal transfer coupling protein TraG; Provisional	NA|733aa|down_7|NZ_CP040667.1_3115316_3117515_-	PRK13878, PRK13878, conjugal transfer relaxase TraI; Provisional	NA|124aa|down_8|NZ_CP040667.1_3117549_3117921_-	PRK13877, PRK13877, conjugal transfer transcriptional regulator TraJ	NA|135aa|down_9|NZ_CP040667.1_3118288_3118693_+	pfam17273, DUF5338, Family of unknown function (DUF5338)
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	11	3199459-3199602	10	CRISPRCasFinder	no		PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Orphan	GTTGTCGGATGCGACGCTATGCGTCTTATCCGACCTACAGTTCAGTTCACC	51	0	0	NA	NA	NA	1	1	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA,NA|82aa|down_4|NZ_CP040667.1_3203595_3203841_-,NA|272aa|down_5|NZ_CP040667.1_3204253_3205069_-,NA|99aa|down_9|NZ_CP040667.1_3209155_3209452_-	NA|204aa|up_9|NZ_CP040667.1_3187570_3188182_+	PRK09527, lacA, galactoside O-acetyltransferase; Reviewed	NA|394aa|up_8|NZ_CP040667.1_3188284_3189466_-	PRK09705, cynX, putative cyanate transporter; Provisional	NA|157aa|up_7|NZ_CP040667.1_3189471_3189942_-	COG1513, CynS, Cyanate lyase [Inorganic ion transport and metabolism]	NA|220aa|up_6|NZ_CP040667.1_3189972_3190632_-	cd00884, beta_CA_cladeB, Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site	NA|300aa|up_5|NZ_CP040667.1_3190740_3191640_+	PRK11242, PRK11242, DNA-binding transcriptional regulator CynR; Provisional	NA|428aa|up_4|NZ_CP040667.1_3191976_3193260_-	PRK09230, PRK09230, cytosine deaminase; Provisional	NA|420aa|up_3|NZ_CP040667.1_3193249_3194509_-	PRK11017, codB, cytosine permease; Provisional	NA|629aa|up_2|NZ_CP040667.1_3194838_3196725_-	PRK10524, prpE, propionyl-CoA synthetase; Provisional	NA|484aa|up_1|NZ_CP040667.1_3196764_3198216_-	PRK09425, prpD, bifunctional 2-methylcitrate dehydratase/aconitate hydratase	NA|390aa|up_0|NZ_CP040667.1_3198249_3199419_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|297aa|down_0|NZ_CP040667.1_3199672_3200563_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|529aa|down_1|NZ_CP040667.1_3200801_3202388_+	PRK15424, PRK15424, propionate catabolism operon regulatory protein PrpR; Provisional	NA|92aa|down_2|NZ_CP040667.1_3202485_3202761_-	PRK09929, PRK09929, hypothetical protein; Provisional	NA|224aa|down_3|NZ_CP040667.1_3202907_3203579_+	TIGR00949, Uncharacterized_membrane_protein_YahN, The Resistance to Homoserine/Threonine (RhtB) Family protein	NA|82aa|down_4|NZ_CP040667.1_3203595_3203841_-	NA	NA|272aa|down_5|NZ_CP040667.1_3204253_3205069_-	NA	NA|350aa|down_6|NZ_CP040667.1_3205311_3206361_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|461aa|down_7|NZ_CP040667.1_3206737_3208120_-	PRK06846, PRK06846, putative deaminase; Validated	NA|317aa|down_8|NZ_CP040667.1_3208129_3209080_-	PRK12352, PRK12352, putative carbamate kinase; Reviewed	NA|99aa|down_9|NZ_CP040667.1_3209155_3209452_-	NA
GCF_005954725.1_ASM595472v1	NZ_CP040667	Escherichia coli strain S17-1 chromosome, complete genome	12	4279343-4279482	4	PILER-CR	no	TnsE_C	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	Orphan	CCCAGTTCCCAACTATTTTGTCA	23	0	0	NA	NA	NA	2	2	Orphan	PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,WYL,DEDDh,DinG,c2c9_V-U4,TnsE_C	NA|126aa|up_9|NZ_CP040667.1_4273513_4273891_-,NA|108aa|up_8|NZ_CP040667.1_4273944_4274268_-,NA|124aa|up_7|NZ_CP040667.1_4274300_4274672_-,NA|166aa|up_6|NZ_CP040667.1_4274732_4275230_-,NA	NA|126aa|up_9|NZ_CP040667.1_4273513_4273891_-	NA	NA|108aa|up_8|NZ_CP040667.1_4273944_4274268_-	NA	NA|124aa|up_7|NZ_CP040667.1_4274300_4274672_-	NA	NA|166aa|up_6|NZ_CP040667.1_4274732_4275230_-	NA	NA|263aa|up_5|NZ_CP040667.1_4275305_4276094_-	PRK13746, PRK13746, aminoglycoside resistance protein; Provisional	NA|175aa|up_4|NZ_CP040667.1_4276151_4276676_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|158aa|up_3|NZ_CP040667.1_4276770_4277244_-	cd00209, DHFR, Dihydrofolate reductase (DHFR)	NA|179aa|up_2|NZ_CP040667.1_4277575_4278112_+	TIGR02249, Integrase/recombinase_E2_protein	NA|109aa|up_1|NZ_CP040667.1_4278226_4278553_+	TIGR02249, Integrase/recombinase_E2_protein	NA|80aa|up_0|NZ_CP040667.1_4278740_4278980_-	pfam08849, DUF1819, Putative inner membrane protein (DUF1819)	NA|347aa|down_0|NZ_CP040667.1_4279782_4280823_+	PRK10918, PRK10918, phosphate ABC transporter substrate-binding protein PstS	NA|320aa|down_1|NZ_CP040667.1_4280909_4281869_+	PRK11275, pstC, phosphate ABC transporter permease PstC	NA|297aa|down_2|NZ_CP040667.1_4281868_4282759_+	PRK11268, pstA, phosphate ABC transporter permease PstA	NA|258aa|down_3|NZ_CP040667.1_4282941_4283715_+	PRK10744, pstB, phosphate ABC transporter ATP-binding protein PstB	NA|242aa|down_4|NZ_CP040667.1_4283729_4284455_+	PRK11115, PRK11115, phosphate signaling complex protein PhoU	NA|279aa|down_5|NZ_CP040667.1_4284740_4285577_+	PRK09772, PRK09772, transcriptional antiterminator BglG; Provisional	NA|626aa|down_6|NZ_CP040667.1_4285710_4287588_+	PRK09824, PRK09824, PTS system beta-glucoside-specific transporter subunits IIABC; Provisional	NA|471aa|down_7|NZ_CP040667.1_4287606_4289019_+	COG2723, BglB, Beta-glucosidase/6-phospho-beta-glucosidase/beta-galactosidase [Carbohydrate transport and metabolism]	NA|539aa|down_8|NZ_CP040667.1_4289087_4290704_+	COG4580, LamB, Maltoporin (phage lambda and maltose receptor) [Carbohydrate transport and metabolism]	NA|390aa|down_9|NZ_CP040667.1_4290730_4291900_+	COG2382, Fes, Enterochelin esterase and related enzymes [Inorganic ion transport and metabolism]
