The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040698	Citrobacter freundii strain R47 chromosome R47, complete sequence	4952107	3212806	3219844	4952107		uncultured_Caudovirales_phage(44.44%)	10	NA	NA
WP_003030769.1|3212806_3214057_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	94.4	9.4e-22
WP_003030767.1|3214192_3214702_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003840850.1|3214876_3215119_-	DinI family protein	NA	Q6UAW0	Klebsiella_phage	77.9	1.5e-29
WP_138828399.1|3215197_3215431_+	DNA polymerase V	NA	A0A222YZE2	Escherichia_phage	80.3	8.6e-22
WP_138828400.1|3215507_3216206_-	arsenical resistance protein ArsH	NA	A0A2H4J5V6	uncultured_Caudovirales_phage	67.2	5.5e-88
WP_138828401.1|3216291_3216612_+	metalloregulator ArsR/SmtB family transcription factor	NA	A0A2H4J145	uncultured_Caudovirales_phage	45.7	8.5e-20
WP_138828402.1|3216661_3217945_+	arsenical efflux pump membrane protein ArsB	NA	A0A2H4J144	uncultured_Caudovirales_phage	70.7	7.8e-165
WP_003030760.1|3217957_3218383_+	glutaredoxin-dependent arsenate reductase	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	70.7	7.3e-51
WP_057101667.1|3218626_3218830_+	hypothetical protein	NA	Q77Z09	Phage_21	94.1	3.7e-21
WP_032948081.1|3219358_3219844_+	outer membrane beta-barrel protein	NA	A0A1B0VBR9	Salmonella_phage	34.9	2.3e-08
>prophage 2
NZ_CP040698	Citrobacter freundii strain R47 chromosome R47, complete sequence	4952107	3310986	3314485	4952107	integrase	Enterobacteria_phage(42.86%)	8	3310784:3310806	3320376:3320398
3310784:3310806	attL	TCTTTGTATGTGATCTTACGTGT	NA	NA	NA	NA
WP_138828427.1|3310986_3312195_+|integrase	tyrosine-type recombinase/integrase	integrase	I6R9B6	Salmonella_phage	76.2	3.6e-180
WP_032936075.1|3312152_3312389_-	hypothetical protein	NA	A0A1P8DTG1	Proteus_phage	53.7	3.3e-13
WP_138828428.1|3312494_3312797_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138828429.1|3312806_3313046_-	DUF4222 domain-containing protein	NA	M1FPC8	Enterobacteria_phage	44.2	8.6e-09
WP_138828430.1|3313008_3313350_-	DUF2591 family protein	NA	R9VYJ6	Serratia_phage	38.2	6.5e-10
WP_138828431.1|3313349_3313568_-	TraR/DksA family transcriptional regulator	NA	M1FQT7	Enterobacteria_phage	76.4	5.0e-24
WP_138828432.1|3313664_3313961_-	DUF4406 domain-containing protein	NA	A0A0U2SAZ1	Escherichia_phage	61.3	8.7e-27
WP_138828433.1|3313957_3314485_-	phage N-6-adenine-methyltransferase	NA	Q9ZWX6	Enterobacteria_phage	68.3	2.9e-65
3320376:3320398	attR	TCTTTGTATGTGATCTTACGTGT	NA	NA	NA	NA
>prophage 3
NZ_CP040698	Citrobacter freundii strain R47 chromosome R47, complete sequence	4952107	3323977	3334015	4952107	tRNA	Tupanvirus(14.29%)	10	NA	NA
WP_003832580.1|3323977_3324961_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.4e-33
WP_003030574.1|3324976_3327364_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_003030571.1|3327368_3327668_+	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
WP_003832584.1|3327821_3328802_+	vitamin B12 ABC transporter permease BtuC	NA	A0A2H4IY97	uncultured_Caudovirales_phage	24.8	6.7e-15
WP_003030569.1|3328862_3329414_+	glutathione peroxidase	NA	NA	NA	NA	NA
WP_003030567.1|3329413_3330163_+	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	30.3	9.3e-09
WP_003836644.1|3330240_3330705_+	lipoprotein nlpC	NA	A0A1V0DZX6	Clostridioides_phage	38.2	3.5e-14
WP_003836643.1|3331021_3331735_+	EAL domain-containing protein	NA	NA	NA	NA	NA
WP_138828436.1|3331796_3333239_+	YdiU family protein	NA	A0A075BSJ0	Microcystis_phage	35.3	4.5e-52
WP_003836641.1|3333235_3334015_-	heme ABC transporter ATP-binding protein	NA	A0A285PWH2	Cedratvirus	26.7	7.9e-11
>prophage 4
NZ_CP040698	Citrobacter freundii strain R47 chromosome R47, complete sequence	4952107	3430502	3437685	4952107		Enterobacteria_phage(33.33%)	8	NA	NA
WP_138828469.1|3430502_3432002_+	RNA-directed DNA polymerase	NA	Q2P9X6	Enterobacteria_phage	34.4	1.0e-78
WP_051642696.1|3432689_3433382_-	helix-turn-helix transcriptional regulator	NA	F1C599	Cronobacter_phage	31.9	2.8e-15
WP_048997915.1|3433474_3433666_+	hypothetical protein	NA	NA	NA	NA	NA
WP_043016513.1|3433707_3434016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138828470.1|3434268_3435240_+	replication protein 15	NA	K7PLZ7	Enterobacterial_phage	48.6	6.8e-36
WP_138828471.1|3435236_3435932_+	DNA replication protein	NA	C1JJ54	Enterobacteria_phage	50.2	6.7e-54
WP_138828472.1|3436112_3436691_+	S-adenosylmethionine-binding protein	NA	A0A193GYV6	Enterobacter_phage	72.7	2.0e-80
WP_138828473.1|3436674_3437685_+	DUF968 domain-containing protein	NA	A0A1W6JP62	Morganella_phage	36.0	8.6e-58
>prophage 5
NZ_CP040698	Citrobacter freundii strain R47 chromosome R47, complete sequence	4952107	4054308	4144329	4952107	portal,protease,head,terminase,integrase,tail,holin,capsid,tRNA	Enterobacteria_phage(31.51%)	111	4059623:4059638	4148892:4148907
WP_003841958.1|4054308_4054521_-	cold shock protein CspG	NA	A0A1W6JNX5	Morganella_phage	74.3	2.1e-22
WP_050499177.1|4054895_4055441_-	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	46.2	1.0e-12
WP_032941335.1|4055419_4055968_-	lysozyme	NA	K7PM52	Enterobacteria_phage	94.0	2.1e-98
WP_003841952.1|4055939_4056218_-	hypothetical protein	NA	K7P6H9	Enterobacteria_phage	98.9	1.5e-44
WP_003841950.1|4056371_4056560_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071524345.1|4056614_4056794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003841948.1|4057990_4058206_-	RNA chaperone/antiterminator CspA	NA	A0A1W6JNX5	Morganella_phage	80.6	5.9e-25
WP_003841946.1|4058502_4058715_+	cold shock-like protein CspF	NA	NA	NA	NA	NA
WP_042270662.1|4059001_4059433_-	antitermination protein	NA	Q8W638	Enterobacteria_phage	59.2	3.9e-36
WP_057101938.1|4059447_4060140_-	DUF968 domain-containing protein	NA	A0A291AWV9	Escherichia_phage	42.0	2.5e-64
4059623:4059638	attL	TGGCCAATCAGGTGAT	NA	NA	NA	NA
WP_057101939.1|4060136_4060496_-	RusA family crossover junction endodeoxyribonuclease	NA	G8C7V6	Escherichia_phage	63.6	2.3e-42
WP_057108923.1|4060498_4060699_-	hypothetical protein	NA	H6WRY8	Salmonella_phage	69.2	3.3e-22
WP_003841938.1|4060704_4061304_-	DUF1367 family protein	NA	K7PKS6	Enterobacteria_phage	95.5	1.1e-105
WP_071524344.1|4061338_4061587_-	hypothetical protein	NA	K7PHG9	Enterobacteria_phage	91.5	2.2e-39
WP_003841935.1|4061697_4061931_-	DinI family protein	NA	K7PM44	Enterobacteria_phage	71.4	8.9e-27
WP_123977203.1|4062206_4062572_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123977205.1|4063136_4063592_-	DUF550 domain-containing protein	NA	S4TSR6	Salmonella_phage	86.5	9.2e-44
WP_138828607.1|4063588_4063900_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138828608.1|4063918_4064668_-	ATP-binding protein	NA	S4TNF5	Salmonella_phage	85.9	3.1e-121
WP_123977211.1|4064670_4065543_-	DNA-binding protein	NA	V5URT9	Shigella_phage	51.9	4.2e-85
WP_138828609.1|4065755_4068290_+	exodeoxyribonuclease VIII	NA	K7P6V4	Enterobacteria_phage	62.7	4.7e-238
WP_057101942.1|4068301_4069387_+	recombinase RecT	NA	K7PKR8	Enterobacteria_phage	63.6	8.7e-125
WP_057101943.1|4069425_4069668_+	DUF4060 family protein	NA	K7PHF4	Enterobacteria_phage	88.6	3.0e-33
WP_072276910.1|4069732_4070005_+	excisionase	NA	A0A2H4J5E1	uncultured_Caudovirales_phage	63.3	1.5e-28
WP_057101944.1|4069973_4071059_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	68.4	4.8e-147
WP_003034934.1|4071395_4071734_-	YebY family protein	NA	NA	NA	NA	NA
WP_049002332.1|4071754_4072627_-	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_003844136.1|4072630_4073005_-	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_003034925.1|4073148_4073379_+	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	1.0e-14
WP_003841657.1|4073485_4074142_+	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_003833802.1|4074165_4074828_+	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	31.1	9.1e-08
WP_138828610.1|4074818_4076897_-	oligopeptidase B	NA	NA	NA	NA	NA
WP_138828611.1|4076959_4077619_-	DUF533 domain-containing protein	NA	NA	NA	NA	NA
WP_003034909.1|4077713_4078067_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003034906.1|4078188_4078479_-	DNA damage-inducible protein YebG	NA	NA	NA	NA	NA
WP_044700298.1|4078610_4079789_+	formate-dependent phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA	NA
WP_003034901.1|4079856_4080498_-	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_003841668.1|4080532_4082344_-	phosphogluconate dehydratase	NA	NA	NA	NA	NA
WP_003034896.1|4082577_4084053_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.1	8.3e-78
WP_003034893.1|4084420_4085290_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003034890.1|4085408_4086851_+	pyruvate kinase	NA	NA	NA	NA	NA
WP_138828612.1|4086894_4087866_-	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA	NA
WP_138828613.1|4087985_4089305_-	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	36.8	1.2e-14
WP_003844151.1|4089320_4090265_-	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
WP_138828614.1|4090343_4091099_+	zinc ABC transporter ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	28.3	6.5e-18
WP_138828615.1|4091095_4091881_+	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
WP_003841680.1|4091959_4092970_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	25.4	1.6e-08
WP_003034869.1|4092978_4093590_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_003034867.1|4093670_4094192_-	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
WP_003034865.1|4094226_4094970_-	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_003844155.1|4094998_4095442_-	dihydroneopterin triphosphate diphosphatase	NA	NA	NA	NA	NA
WP_003034862.1|4095443_4097216_-|tRNA	aspartate--tRNA ligase	tRNA	NA	NA	NA	NA
WP_003841685.1|4097505_4098072_+	hydrolase	NA	NA	NA	NA	NA
WP_138828832.1|4098153_4098270_-	preprotein translocase subunit SecY	NA	NA	NA	NA	NA
WP_138828616.1|4098394_4099063_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	60.9	1.8e-80
WP_138828617.1|4099063_4099453_-	LexA family transcriptional regulator	NA	Q1MVE7	Enterobacteria_phage	72.1	6.0e-52
WP_138828618.1|4099773_4099941_+	DinI-like family protein	NA	Q6UAW0	Klebsiella_phage	74.1	1.3e-16
WP_138828619.1|4100217_4100928_-	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_138828620.1|4103333_4106051_-	kinase	NA	A0A286S259	Klebsiella_phage	56.7	0.0e+00
WP_138828621.1|4106047_4106428_-	nitrite transporter	NA	A0A286S2A6	Klebsiella_phage	78.6	1.4e-58
WP_085396128.1|4106437_4106920_-	DUF1833 family protein	NA	A0A286S2B1	Klebsiella_phage	75.0	1.1e-63
WP_138828622.1|4106916_4107390_-	hypothetical protein	NA	A0A286S298	Klebsiella_phage	61.9	6.8e-58
WP_138828623.1|4107389_4109912_-|tail	phage tail tape measure protein	tail	K7PM62	Enterobacteria_phage	70.2	8.6e-216
WP_138828624.1|4110179_4110560_-|tail	phage tail protein	tail	K7PJU9	Enterobacteria_phage	77.4	2.0e-44
WP_138828625.1|4110612_4111104_-|tail	phage tail protein	tail	A0A286S1Q8	Klebsiella_phage	71.2	5.6e-63
WP_039517932.1|4111162_4111528_-	DUF3168 domain-containing protein	NA	A0A286S1R1	Klebsiella_phage	68.6	3.8e-48
WP_069323626.1|4112055_4112388_-|head	phage head closure protein	head	K7PH08	Enterobacteria_phage	90.9	1.2e-53
WP_039517925.1|4112389_4112602_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138828626.1|4112665_4112992_-|head,tail	phage gp6-like head-tail connector protein	head,tail	K7PKT4	Enterobacteria_phage	88.0	6.1e-50
WP_138828627.1|4113033_4114245_-|capsid	phage major capsid protein	capsid	K7PM57	Enterobacteria_phage	86.0	4.4e-194
WP_138828628.1|4114254_4115103_-|protease	Clp protease ClpP	protease	K7PH05	Enterobacteria_phage	91.4	9.2e-138
WP_138828629.1|4115116_4116421_-|portal	phage portal protein	portal	K7PJU5	Enterobacteria_phage	93.3	8.9e-233
WP_138828630.1|4116420_4118157_-|terminase	terminase large subunit	terminase	K7PKT2	Enterobacteria_phage	99.3	0.0e+00
WP_138828631.1|4118156_4118654_-|terminase	phage terminase small subunit P27 family	terminase	K7PHI2	Enterobacteria_phage	83.6	2.7e-73
WP_138828632.1|4118811_4119162_-	HNH endonuclease	NA	K7PHK9	Enterobacteria_phage	82.8	1.4e-52
WP_138828633.1|4119161_4119752_-	hypothetical protein	NA	S4TR53	Salmonella_phage	84.1	6.5e-98
WP_138828634.1|4119733_4121191_-	glycosyltransferase	NA	K7PKP3	Enterobacterial_phage	90.3	4.7e-267
WP_138828635.1|4121209_4121437_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138828636.1|4121456_4121687_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138828833.1|4121664_4121871_-	hypothetical protein	NA	A0A286SGR9	Klebsiella_phage	78.6	1.1e-17
WP_138828637.1|4121827_4122097_-	hypothetical protein	NA	G8C7W1	Escherichia_phage	79.4	2.0e-06
WP_138828638.1|4122104_4122722_-	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	72.7	8.9e-82
WP_008323297.1|4122721_4123003_-|holin	phage holin family protein	holin	K7PKN9	Enterobacterial_phage	88.2	4.2e-39
WP_008323296.1|4122989_4123385_-	membrane protein	NA	K7PHB9	Enterobacterial_phage	81.7	2.6e-50
WP_138828639.1|4123483_4124086_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138828640.1|4124192_4124771_-	DUF1133 family protein	NA	A0A0U2S606	Escherichia_phage	56.1	3.0e-47
WP_138828641.1|4124785_4125775_-	DUF968 domain-containing protein	NA	K7PJS6	Enterobacterial_phage	72.3	4.5e-144
WP_138828642.1|4125771_4126497_-	phage regulatory protein/antirepressor Ant	NA	G0ZND1	Cronobacter_phage	53.5	9.8e-56
WP_075848445.1|4126513_4126903_-	RusA family crossover junction endodeoxyribonuclease	NA	K7PKN5	Enterobacterial_phage	88.1	9.2e-61
WP_049003108.1|4126902_4127121_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138828643.1|4127117_4127777_-	DNA methyltransferase	NA	I6PDF5	Cronobacter_phage	77.3	1.2e-95
WP_138828834.1|4127776_4128220_-	hypothetical protein	NA	U5P0U0	Shigella_phage	29.8	2.6e-11
WP_138828644.1|4128222_4129218_-	hypothetical protein	NA	S5FM81	Shigella_phage	69.3	6.9e-60
WP_138828645.1|4129627_4130092_-	hypothetical protein	NA	K7PJS5	Enterobacterial_phage	89.5	1.7e-69
WP_032207801.1|4130117_4130315_-	hypothetical protein	NA	H9C161	Pectobacterium_phage	66.7	1.9e-17
WP_032207827.1|4130419_4131067_+	helix-turn-helix domain-containing protein	NA	H9C160	Pectobacterium_phage	63.0	1.4e-74
WP_138828646.1|4132529_4133567_+	chromosome partitioning protein ParB	NA	K7PKM7	Enterobacterial_phage	89.3	9.7e-166
WP_138828647.1|4133550_4134135_+	hypothetical protein	NA	A0A193GYL1	Enterobacter_phage	63.2	2.2e-29
WP_138828648.1|4134131_4134479_+	DUF551 domain-containing protein	NA	K7PH61	Enterobacteria_phage	64.5	1.5e-22
WP_138828649.1|4134475_4135054_+	ead/Ea22-like family protein	NA	A0A1B0VCG7	Salmonella_phage	49.1	2.0e-43
WP_138828650.1|4135056_4135245_+	diguanylate phosphodiesterase	NA	A0A192Y8X2	Salmonella_phage	91.9	2.8e-23
WP_138828651.1|4135798_4136176_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003034696.1|4136240_4136477_+	excisionase family protein	NA	Q8W657	Enterobacteria_phage	92.3	2.1e-39
WP_047389241.1|4136535_4137849_+|integrase	site-specific integrase	integrase	Q8W658	Enterobacteria_phage	89.2	3.6e-234
WP_138828652.1|4137836_4138601_+	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	79.5	1.2e-56
WP_003034689.1|4138653_4139049_+	membrane protein	NA	NA	NA	NA	NA
WP_003034686.1|4139089_4139833_+	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	31.3	3.2e-25
WP_003844163.1|4139829_4140798_+|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
WP_044701481.1|4141041_4141788_-	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_003034677.1|4141790_4142357_-	VOC family protein	NA	NA	NA	NA	NA
WP_003034673.1|4142595_4144329_+|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L6Z2	Tupanvirus	33.6	1.7e-85
4148892:4148907	attR	TGGCCAATCAGGTGAT	NA	NA	NA	NA
>prophage 6
NZ_CP040698	Citrobacter freundii strain R47 chromosome R47, complete sequence	4952107	4302382	4310604	4952107		Enterobacteria_phage(42.86%)	8	NA	NA
WP_003842215.1|4302382_4303486_-	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	E5ES42	Bathycoccus_sp._RCC1105_virus	30.9	5.9e-36
WP_003842218.1|4303502_4303898_-	WxcM-like domain-containing protein	NA	NA	NA	NA	NA
WP_032941356.1|4303894_4304446_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	50.0	3.5e-45
WP_138828692.1|4304860_4305739_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	63.1	6.6e-107
WP_003841822.1|4305792_4306692_-	dTDP-4-dehydrorhamnose reductase	NA	A0A140G5S3	Enterobacteria_phage	36.3	2.1e-31
WP_138828693.1|4306691_4307777_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.1	4.8e-99
WP_138828694.1|4308150_4309044_-	UTP--glucose-1-phosphate uridylyltransferase GalF	NA	A0A127AW70	Bacillus_phage	40.0	6.2e-44
WP_138828695.1|4309209_4310604_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	34.2	5.2e-21
>prophage 7
NZ_CP040698	Citrobacter freundii strain R47 chromosome R47, complete sequence	4952107	4352454	4362033	4952107	protease,tRNA	Bacillus_phage(28.57%)	8	NA	NA
WP_003841761.1|4352454_4353858_+	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	29.6	3.9e-32
WP_003036797.1|4353854_4354577_+	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	32.7	9.2e-30
WP_003841759.1|4354712_4355045_+	YegP family protein	NA	NA	NA	NA	NA
WP_003844346.1|4355204_4356566_+|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	92.9	4.1e-204
WP_048218204.1|4356836_4359113_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.8	1.4e-164
WP_003036810.1|4359143_4359464_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	3.5e-13
WP_003036813.1|4359787_4360012_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.7	3.6e-17
WP_003840216.1|4360086_4362033_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.8	2.4e-40
>prophage 8
NZ_CP040698	Citrobacter freundii strain R47 chromosome R47, complete sequence	4952107	4400175	4408594	4952107	tRNA	Enterobacteria_phage(66.67%)	9	NA	NA
WP_003844377.1|4400175_4402209_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	4.0e-54
WP_071697500.1|4402415_4402874_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	69.3	1.0e-50
WP_003027346.1|4402916_4403387_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	76.9	4.9e-64
WP_003840155.1|4403433_4404153_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_003027348.1|4404149_4405835_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.6	6.7e-281
WP_049002964.1|4406060_4406792_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	93.5	1.8e-105
WP_003027354.1|4406843_4406951_+	protein YohO	NA	NA	NA	NA	NA
WP_003844383.1|4406931_4407663_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_016150643.1|4407646_4408594_-	ABC transporter ATP-binding protein	NA	F2Y1V5	Organic_Lake_phycodnavirus	25.8	2.0e-08
>prophage 9
NZ_CP040698	Citrobacter freundii strain R47 chromosome R47, complete sequence	4952107	4941989	4951957	4952107	integrase,capsid	Enterobacteria_phage(88.89%)	12	4921451:4921465	4948608:4948622
4921451:4921465	attL	TGCCGTACCGCTGTC	NA	NA	NA	NA
WP_138828794.1|4941989_4943180_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	50.4	1.6e-108
WP_138828795.1|4943272_4944781_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138828796.1|4945170_4945746_-	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	51.9	1.3e-39
WP_138828797.1|4945762_4946005_-	hypothetical protein	NA	Q7M294	Enterobacteria_phage	58.0	4.2e-19
WP_138828798.1|4946001_4946805_-|capsid	capsid protein	capsid	Q7M2A2	Enterobacteria_phage	25.5	2.8e-11
WP_000557711.1|4947363_4947630_+	AlpA family transcriptional regulator	NA	Q7M299	Enterobacteria_phage	62.5	6.8e-23
WP_087855476.1|4947626_4948226_+	host cell division inhibitor Icd-like protein	NA	Q7M2A7	Enterobacteria_phage	76.6	1.6e-48
WP_087855475.1|4948218_4948518_+	Derepression protein	NA	Q7M2A0	Enterobacteria_phage	68.7	4.1e-32
WP_138828799.1|4948510_4948960_+	hypothetical protein	NA	Q7M298	Enterobacteria_phage	67.3	6.3e-45
4948608:4948622	attR	TGCCGTACCGCTGTC	NA	NA	NA	NA
WP_138828838.1|4949064_4949292_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071692548.1|4949288_4949609_+	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_138828800.1|4949623_4951957_+	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	84.0	0.0e+00
>prophage 1
NZ_CP040696	Citrobacter freundii strain R47 plasmid pR47-309, complete sequence	309536	23674	111969	309536	integrase,protease,transposase	Escherichia_phage(27.59%)	99	75871:75930	89282:90101
WP_001585166.1|23674_24754_-|protease	cysteine protease StiP family protein	protease	A0A172Q0S8	Acinetobacter_phage	34.1	2.8e-38
WP_001040058.1|24755_25529_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001280115.1|25521_26664_-	hypothetical protein	NA	A0A172Q0Y1	Acinetobacter_phage	34.5	6.5e-30
WP_012695441.1|26673_27732_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000254137.1|28052_28634_+	tellurium resistance-associated protein TerZ	NA	K4JRX3	Caulobacter_phage	30.0	6.3e-13
WP_001054786.1|28633_29791_+	tellurium resistance protein TerA	NA	NA	NA	NA	NA
WP_000007449.1|29813_30269_+	tellurite resistance TerB family protein	NA	NA	NA	NA	NA
WP_000255079.1|30291_31332_+	tellurium resistance membrane protein TerC	NA	K7QKE8	Escherichia_phage	48.0	2.2e-77
WP_000116680.1|31380_31959_+	tellurium resistance membrane protein TerD	NA	A0A2P1N0L4	Streptomyces_phage	40.0	2.5e-06
WP_000301247.1|32027_32603_+	TerD family protein	NA	K4JRX3	Caulobacter_phage	41.6	8.7e-31
WP_001053340.1|33031_34273_+	tellurium resistance protein TerF	NA	NA	NA	NA	NA
WP_000374058.1|34363_34819_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000398479.1|35059_35251_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001151572.1|35342_35684_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000880375.1|36670_36925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001531258.1|37265_38048_-	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	96.5	6.1e-136
WP_000627495.1|38044_39067_-|transposase	IS21-like element ISSen3 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	85.3	1.9e-174
WP_000211823.1|40924_41911_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000341066.1|42831_43224_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012695443.1|43202_43514_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000462754.1|43882_44539_+|protease	trypsin-like serine protease	protease	NA	NA	NA	NA
WP_123906519.1|44578_44761_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000340139.1|44741_45239_+	membrane protein	NA	NA	NA	NA	NA
WP_012695445.1|45243_46632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012477377.1|47032_47326_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000088044.1|47330_48656_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA	NA
WP_000134171.1|48716_48923_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000985909.1|49023_49434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001805097.1|49446_49971_+	hypothetical protein	NA	NA	NA	NA	NA
WP_023280914.1|50822_51746_-|transposase	IS5 family transposase	transposase	Q1MVF0	Enterobacteria_phage	92.8	2.3e-166
WP_000405672.1|52312_52747_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_001287661.1|52832_55238_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	46.1	1.0e-141
WP_000118563.1|55234_56311_+	signal peptidase II	NA	NA	NA	NA	NA
WP_000993245.1|56319_56532_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_001446012.1|56494_56614_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001087807.1|56597_56834_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_001277466.1|56830_57196_-	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_000209297.1|57213_58899_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.8e-39
WP_000522996.1|58937_59363_-	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_000732275.1|59390_59666_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_001294656.1|59681_60047_-	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_001166628.1|60118_60574_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_000278471.1|61251_61677_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001224686.1|62225_62534_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000784387.1|62549_63407_+	HNH endonuclease	NA	G0X580	Salmonella_phage	34.2	3.9e-11
WP_001194554.1|63468_63672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001287391.1|64013_64418_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_001100635.1|64595_64889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000175475.1|64914_65151_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000916941.1|65191_65647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000490638.1|65706_66372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001371925.1|66429_66810_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000027057.1|67139_68000_-	class A broad-spectrum beta-lactamase TEM-1	NA	Q1MVP3	Enterobacteria_phage	100.0	4.6e-161
WP_001235713.1|68182_68740_-	recombinase family protein	NA	Q1MVP4	Enterobacteria_phage	100.0	7.0e-94
WP_001143760.1|68903_71909_+|transposase	Tn3-like element Tn3 family transposase	transposase	Q1MVP5	Enterobacteria_phage	100.0	0.0e+00
75871:75930	attL	GGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTT	NA	NA	NA	NA
WP_001067855.1|75922_76627_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_124060971.1|76597_77179_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002008781.1|77444_77945_+	hypothetical protein	NA	A0A1V0SB21	Catovirus	31.7	3.3e-10
WP_000019304.1|77944_78514_+	trimethoprim-resistant dihydrofolate reductase DfrA19	NA	A0A1V0SD48	Indivirus	27.2	3.5e-08
WP_072058701.1|78896_79148_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000845039.1|79116_80130_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_001082319.1|80287_81091_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA	NA
WP_000480968.1|81090_81927_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA	NA
WP_024139167.1|82416_82629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001749969.1|82641_83850_+	type II site-specific deoxyribonuclease	NA	E5E3X4	Burkholderia_phage	42.5	1.2e-34
WP_001288432.1|83883_85317_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	50.6	7.0e-106
WP_001749967.1|85698_85905_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012561158.1|85909_86551_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_013279382.1|86606_86918_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016338363.1|86953_87268_-	KikA	NA	NA	NA	NA	NA
WP_012561155.1|87264_87609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071562618.1|87624_87975_-	H-NS histone family protein	NA	NA	NA	NA	NA
WP_013279384.1|88038_88776_+	lytic transglycosylase domain-containing protein	NA	NA	NA	NA	NA
WP_016338364.1|88784_89066_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|89333_90038_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001572372.1|90203_90680_-	WbuC family cupin fold metalloprotein	NA	NA	NA	NA	NA
89282:90101	attR	GGCACTGTTGCAAAGTTAGCGATGAGGCAGCCTTTTGTCTTATTCAAAGGCCTTACATTTCAAAAACTCTGCTTACCAGGCGCATTTCGCCCAGGGGATCACCATAATAAAATGCTGAGGCCTGGCCTTTGCGTAGTGCACGCATCACCTCAATACCTTTGATGGTGGCGTAAGCCGTCTTCATGGATTTAAATCCCAGCGTGGCGCCGATTATCCGTTTCAGTTTGCCATGATCGCATTCAATCACGTTGTTCCGGTACTTAATCTGTCGGTGTTCAACGTCAGACGGGCACCGGCCTTCGCGTTTGAGCAGAGCAAGCGCGCGACCATAGGCGGGCGCTTTATCCGTGTTGATGAATCGCGGGATCTGCCACTTCTTCACGTTGTTGAGGATTTTACCCAGAAACCGGTATGCAGCTTTGCTGTTACGACGGGAGGAGAGATAAAAATCGACAGTGCGGCCCCGGCTGTCGACGGCCCGGTACAGATACGCCCAGCGGCCATTGACCTTCACGTAGGTTTCATCCATGTGCCACGGGCAAAGATCGGAAGGGTTACGCCAGTACCAGCGCAGCCGTTTTTCCATTTCAGGCGCATAACGCTGAACCCAGCGGTAAATCGTGGAGTGATCGACATTCACTCCGCGTTCAGCCAGCATCTCCTGCAGCTCACGGTAACTGATGCCGTATTTGCAGTACCAGCGTACGGCCCACAGAATGATGTCACGCTGAAAATGCCGGCCTTTGAATGGGTTCATGTGCAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCC	NA	NA	NA	NA
WP_001572373.1|90756_92376_-	phosphoethanolamine--lipid A transferase MCR-9.1	NA	NA	NA	NA	NA
WP_001572374.1|92564_93488_-|transposase	IS5 family transposase	transposase	Q9MCT5	Escherichia_phage	99.3	2.4e-176
WP_004248839.1|93571_94918_+	copper resistance membrane spanning protein PcoS	NA	W8CYF6	Bacillus_phage	26.6	8.8e-18
WP_000723070.1|95135_95570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001572377.1|95827_96943_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA	NA
WP_000019951.1|97065_97338_+	Ni(II)/Co(II)-binding transcriptional repressor RcnR	NA	NA	NA	NA	NA
WP_000193207.1|97803_98622_+	DUF4942 domain-containing protein	NA	NA	NA	NA	NA
WP_001371952.1|98618_99824_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000121164.1|99887_100091_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000078513.1|100103_101423_-	DUF1173 family protein	NA	NA	NA	NA	NA
WP_000833380.1|101673_103101_-	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	52.3	3.4e-100
WP_138827843.1|103315_103831_+	nuclease	NA	A0A1X6WF84	Pacmanvirus	38.6	2.1e-07
WP_001118616.1|104570_105494_-|transposase	IS5-like element IS903B family transposase	transposase	Q9MCT5	Escherichia_phage	99.3	1.1e-176
WP_077257931.1|105540_105963_-	hypothetical protein	NA	A0A1B0VFY5	Salmonella_phage	97.6	6.7e-65
WP_001567369.1|106016_106649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001567368.1|106677_108081_-|transposase	ISNCY-like element ISKpn21 family transposase	transposase	NA	NA	NA	NA
WP_000785965.1|108294_108612_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001100610.1|108634_108940_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000285959.1|108984_109656_+	trypsin-like peptidase domain-containing protein	NA	NA	NA	NA	NA
WP_001371904.1|110113_110521_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000900745.1|110571_110889_-	hypothetical protein	NA	NA	NA	NA	NA
WP_122966916.1|110857_111073_-	hypothetical protein	NA	NA	NA	NA	NA
WP_100185530.1|111054_111969_-|transposase	IS5 family transposase	transposase	A0A077SK28	Escherichia_phage	98.4	3.6e-172
>prophage 2
NZ_CP040696	Citrobacter freundii strain R47 plasmid pR47-309, complete sequence	309536	155124	224322	309536	integrase,transposase	Escherichia_phage(55.17%)	79	174836:174895	219821:223397
WP_000219087.1|155124_156363_-|transposase	IS110 family transposase	transposase	A0A0U3ULR1	Bacillus_phage	23.1	2.5e-11
WP_000589001.1|156784_158125_-|transposase	ISNCY family transposase	transposase	NA	NA	NA	NA
WP_000137794.1|158555_159161_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000703842.1|159377_159659_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000633161.1|160034_160346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000814953.1|160568_160769_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000551490.1|160808_161033_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000781547.1|161087_161291_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024143014.1|161470_161764_-	hypothetical protein	NA	I7B2L9	Escherichia_phage	38.6	4.1e-05
WP_001371932.1|161843_162335_-	DUF3085 domain-containing protein	NA	NA	NA	NA	NA
WP_001165367.1|162339_162651_-	DUF957 domain-containing protein	NA	NA	NA	NA	NA
WP_000071366.1|163167_163488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001371935.1|163666_163897_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000252081.1|164068_164962_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|165271_165976_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_002903955.1|167609_168512_-	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	99.7	2.6e-159
WP_023148136.1|168549_168783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002210513.1|168773_169535_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	100.0	1.9e-134
WP_002904004.1|169555_170416_-	class A extended-spectrum beta-lactamase SHV-12	NA	A0A077SL40	Escherichia_phage	99.3	2.2e-155
WP_071538079.1|170379_170562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|170552_171257_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000842134.1|171746_172856_-	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	30.2	2.8e-33
WP_001039466.1|172950_174135_-	tetracycline efflux MFS transporter Tet(D)	NA	NA	NA	NA	NA
WP_000113282.1|174230_174887_+	tetracycline resistance transcriptional repressor TetR(D)	NA	NA	NA	NA	NA
174836:174895	attL	GGCACTGTTGCAAATAGTCGGTGGTGATAAACTTATCATCCCCTTTTGCTGATGGAGCTG	NA	NA	NA	NA
WP_001067855.1|174898_175603_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001011939.1|175746_176388_-	type A-2 chloramphenicol O-acetyltransferase CatII	NA	G3CFL0	Escherichia_phage	45.9	7.3e-55
WP_001239317.1|176537_177038_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|177117_177822_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001550559.1|177855_178347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001446887.1|178453_179191_+	recombinase family protein	NA	NA	NA	NA	NA
WP_000743213.1|179187_179412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000954592.1|179533_179710_+	DUF4102 domain-containing protein	NA	T1S9J3	Salmonella_phage	68.6	1.0e-06
WP_000427619.1|179891_180896_-|transposase	IS110-like element IS5075 family transposase	transposase	NA	NA	NA	NA
WP_042863651.1|180974_183941_-|transposase	Tn3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	72.8	0.0e+00
WP_001067855.1|184061_184766_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_138827841.1|184802_185822_-|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	8.1e-72
WP_032488579.1|185998_186553_+	aminoglycoside N-acetyltransferase AAC(6')-Ib3	NA	NA	NA	NA	NA
WP_012695455.1|186780_187521_-	ATP-binding protein	NA	U5N3V8	Enterobacteria_phage	41.7	4.4e-43
WP_077249983.1|187507_189016_-|transposase	IS21-like element ISCfr8 family transposase	transposase	A0A2L1IVA1	Escherichia_phage	32.7	9.9e-26
WP_001067855.1|189175_189880_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000376623.1|189955_190456_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001993321.1|190474_190654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000259031.1|190583_191423_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
WP_052238321.1|191416_191752_-	ethidium bromide resistance protein	NA	NA	NA	NA	NA
WP_025999322.1|191644_192010_+	hydrogenase maturation nickel metallochaperone HypA	NA	NA	NA	NA	NA
WP_004193231.1|192013_192889_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_004236386.1|192999_194139_+	class C beta-lactamase DHA-1	NA	NA	NA	NA	NA
WP_004193241.1|195489_195720_-	phage shock protein PspD	NA	NA	NA	NA	NA
WP_004193243.1|195728_196088_-	envelope stress response membrane protein PspC	NA	NA	NA	NA	NA
WP_004193245.1|196087_196312_-	envelope stress response membrane protein PspB	NA	NA	NA	NA	NA
WP_003020532.1|196366_197035_-	phage shock protein PspA	NA	NA	NA	NA	NA
WP_004193248.1|197205_198180_+	phage shock protein operon transcriptional activator	NA	NA	NA	NA	NA
WP_017900990.1|198262_198907_+	quinolone resistance pentapeptide repeat protein QnrB4	NA	NA	NA	NA	NA
WP_004193260.1|199002_199911_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	53.0	4.3e-77
WP_004193262.1|200087_200666_-	2-oxo-tetronate isomerase	NA	B5TK85	Pseudomonas_phage	34.0	2.0e-19
WP_004193264.1|200613_201060_-	DUF421 domain-containing protein	NA	NA	NA	NA	NA
WP_004193267.1|201069_201573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004193269.1|201704_202097_+	YdeI family stress tolerance OB fold protein	NA	NA	NA	NA	NA
WP_004193272.1|202397_204041_+	peptide ABC transporter substrate-binding protein SapA	NA	NA	NA	NA	NA
WP_004193276.1|204037_205003_+	peptide ABC transporter permease SapB	NA	NA	NA	NA	NA
WP_000050481.1|205678_207220_-|transposase	IS91 family transposase	transposase	NA	NA	NA	NA
WP_000259031.1|207624_208464_-	sulfonamide-resistant dihydropteroate synthase Sul1	NA	A0A0B5J4J5	Pandoravirus	27.2	5.0e-11
WP_000679427.1|208457_208805_-	quaternary ammonium compound efflux SMR transporter QacE delta 1	NA	NA	NA	NA	NA
WP_012695487.1|210114_210546_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_012695486.1|210908_211322_-	NAD(+)--rifampin ADP-ribosyltransferase	NA	NA	NA	NA	NA
WP_012695485.1|211449_212259_-	AAC(3)-II family aminoglycoside N-acetyltransferase	NA	O64018	Bacillus_phage	29.3	1.2e-17
WP_006473457.1|212500_213856_-|transposase	IS1380-like element IS1247 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	29.7	2.2e-45
WP_012695484.1|214343_214925_-	aminoglycoside N-acetyltransferase AAC(6')-IIc	NA	NA	NA	NA	NA
WP_000845048.1|215087_216101_+|integrase	class 1 integron integrase IntI1	integrase	A0A1P8DJJ6	Virus_Rctr41k	45.5	1.0e-71
WP_001550559.1|216368_216860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|216893_217598_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_001239317.1|217677_218178_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001011939.1|218327_218969_+	type A-2 chloramphenicol O-acetyltransferase CatII	NA	G3CFL0	Escherichia_phage	45.9	7.3e-55
WP_001067855.1|219112_219817_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_000159617.1|220332_220527_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000172888.1|220523_220835_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001180999.1|220897_221137_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000140246.1|222952_223282_-	hypothetical protein	NA	NA	NA	NA	NA
WP_022646498.1|223398_224322_-|transposase	IS5 family transposase	transposase	Q9MCT5	Escherichia_phage	99.7	3.8e-177
219821:223397	attR	CAGCTCCATCAGCAAAAGGGGATGATAAGTTTATCACCACCGACTATTTGCAACAGTGCCATTTCTTTTCTCATTCCTTCAACACTAAAAGCTCCTTTAAAAAGGTTGCAGGGGGCGCATGATGGAAATAAGTTTTCTATAGCATGCAGTTCAGGGTGCATAACCTTACCCGTACTTCGGGCAACATGAGTTACGCCGCTGCCGACAGGGGCTCTCACCAGTTCAAAGTCGCGTCGAACAGGCTCAACATGATCGGCATGCCACCCTTTTTCAGGAAGCTTGCAACCACAATAGGCACAACGCCCCCCAAATTTCATTCGCAGCTCAGCTCGCTGTATTTTAGAGATCTTATTTTTAGGTTTTGAGAACCTACCATCAGGTGATTCAGCTTTGGATAACTTTGCTGAGGGCTCAGGTAATTCAACTAAATTCCCGTTGATATTTATCACCTTGACCATATCATTTTCCGCCTTTACTAAGCTCACGGGCACAGGAACTGGCTTAAGTAACCGCTAAAGATAACAGCCACTGACTGCATCTACCCAGACCTTCTGTTTATACTCAATAGGCCACCCCTCTTTATCTGCCCGGATGACGCAATCATTTACCGTGGTGCGTGACCGGATACGAACATCAAGCGGAAGCGAATCGTTATCCACACGAGCCTGTGCCTCATTTAAAATGCGTAAAAACATCTCTTTGGTCATTCAGATACCCCCTCAACTTTGCGAATTTTGATCAGATGAGGGCGACTCAGTTTACAAAGTTGTTCTGTCGCTTCATCAATCGAATTGAACCGATGAGCCTCTTCGATATTTAAAGTCCAGTATTTCGCTTTCCCTTCTCCCAGATCGGACTCAAAATAATTTCGCTTTACATCCATTTTTTTAGGCCTGCCATTTATCTTGACGACATTATGTCTGTCATCAAAAAGAAATTCGTCCCCCTCAAAAGTGATTAATACAAATGGCCCCTCAGGCTTGGAAGTCCGGGAACTTTCCATTTTCAAAGTCATACTTCAGCCTCTCGATAGAACTCATGAAACGTCAAATTAAAATGGACTCACACCACACTGATTCAGTATTCCTCCTGAACCCCATTAGGCTCTGTTGTGATTTCATATTTAATTCCGCCAGGTGCTCCCACAGCGTCCGCGACCGACTCACACAGCAGCGAGAGATCGTTGAGGGTCATTGGGTGTTCAATGTCCAGCGTGAAGAGTTTCCCGGCTTGCTTGGCGGCTGTCTTGTCAGCATGTTCGGCATTAAAAAGGTATACGGTGTGTTTTTCCTGAGCGGGTGTATTTTGATTTTGCATTGATGATCCTTTTGTTTAGTTCCCCGATTCCGGGGGTGAGTGAATTAATTTAAATTTATATTCGTCTGGTTTAATTAGAACGTTTCCACGCTATGCGTAAACAGGTAATGCAAGGGCTGTATCAACAGGATTAAAGTTACTTTTCTGGATGCAGCAACGCTTGGACATGATGTCCACATTACATCACGATCAAAGCTAAGTTTTTTTTGTATAACCCCTCCATTTTCGTGTGTTTCGCGTTTCAGACGCTTATACGACCTGCTTGACCATCCTCATCAGAAGGCGGTTTAACAGTCCTTTCGCTGTCGGGCGATTGCTATCGACATAGTAAAAACCTGTTTTGGTCGTACCGTGAGCACTGCTCAGCACCCTCAGTTCCCAGATAACGTCACGGATAACGCCGCCATTTTCTGGCTTAAGGCATTCAGATAAATGGCGCATGAAACGAGCTCTTACGGCACGGTAATAGCGGAACTCCTCTGGCTGGTTAGTATTTTCTTTCACCCGGAGTCGCTGGTTACACAGAGTTAGAACTGCATCCATCATTCCCGCCTTCAGCTTCGCCTGGATCGCACCTTGTTGCTGTTCCCTCTCACCTTCGAGTAACGTTAAAATTCTTTCTCCGAGTGCCGTCTTGTTGTGTACGTGCAACTGAACACAGGCAGCTACGCATGCCCAGAATCTGAACTTTTTTATCTGTCCACGCAATTTCCGGGCTACAACCTGACGGTATGCAGAATCACTGAGTATTTTAAAACGCCGACTGGCAACCAGCTCTGGAAGCGACACTCTGTCGCCTATCCCCAGGCGGGAAAAGGTTTGTCCCCGCTGTGCGAGACGATGATAGACAGCGCCCTTGCCTTTTGAAATTCGGACCGCGCCATAACGAAGAAGATACTGAGCAGCAGTCGTTGGAGTAAACTCACCGTCAGCGATGCGCTGGCGTAACCCGTCGTATTCATGCCAGATAATCCAGGACGCCGTATCTTCTTCAACAGTCAGCTCATCCTCTTCCTCGAATGCCACGACGACAGAACTGCTCTCTCCGGTCTTTAGGCTACGTGAAGCCCTGGGGTCAGCCTGCCCGTCAAAATAGGTCATCAGCGGCAACGTATCAGTCAGTCCATCATAAGCTGTACCGAACCGGCCTCCGGGCAGTTTCATCCAGAGTGGAGCTGGCATTGGTGTACGGGGCACAGGCTGCATGTCAGGCTCATCCTCAAGAAGGTCCAGATCGGCCTCTTCCCAGACCCTGCGATAGATCTCAATTGCCCGAAACGGGCGAGGGTTGAAACAGTGCAACGACCAGAGGAAATCAACGTGGATCACGTTTGCTTCCTGTACAAGCCGAAATTGTGGCTCAGCCATACGACGGTTATAAGCCGTATCGTCAACCTCGCCGGAAAGTAGCTTTCTGCGATGCTCTGCCGCACGTCTTGCTTCAACATAATCAAGGCTGCAACAGGCATGAAAAAGACGTTCAGTCAGGGACGAAGAAAAGATATTGGGTTGAAGACGCACATATCCGCCTTCGAACACTTTACGACCGATATAATCCCGCAGGCTCCAGTCGTACTGGATCTTAGAAAGAAATCGCTGAAGACGACTCAGGCCAGCCTGATAACCGTATTTCTCCGGGTCAGTTCGAAGGAGCGTTTCCATTGAATGGTCAACCCCTACTGCTGTGCAAAATGAGCACCCTATAATTCTGATCATTTAGAAATTTTTTTGCGTTTAAAATCAATGAATTGAAAGATTTCATTTTTCTAAGTCTGATAAAACAGATGAAAACCCAACTGACTATACTCATAAAACTCAATCTTTGCGCTGCTGTACGATACCAGTAATTACAGGTGCCGAGTTTAACATCATGAAAAGTAGCCCAATAATGAATGACGCAACGCCAGCTGCGGTGCCTAACTTCTGACTGAACACCATTGAAACAAAGTACATATTTGGGATAAAAACGGACATAGCAATCACGAAAAGTAACTTATTCAGATAATTATTTATTCGGGTCTTAACCTCAACTCTATCATAAAAAGCCATCGAAACGTAAGCAGTTATCAGTGAATAAAAAGACCATGTCATATAGTTAACCGATTCATTAAATGCCTCTCGCAAAAGCAAAGCACTTTCTGTCATTCCCTACCTCATTAAATCAATAGAAAATAAATCTGAATAATTTATTTTTAAAAGAAAAGAGGCTTTGTTGAATAAATCAGATTTCGGGTAAGTCTCCCCCGTAGCGGGTTGTGTT	NA	NA	NA	NA
>prophage 1
NZ_CP040697	Citrobacter freundii strain R47 plasmid pR47-54, complete sequence	53964	4071	40208	53964	integrase,transposase	Escherichia_phage(36.84%)	50	4812:4828	28640:28656
WP_001067784.1|4071_4776_+|transposase	IS6-like element IS1006 family transposase	transposase	A0A077SL39	Escherichia_phage	85.8	1.9e-120
4812:4828	attL	CTATTTGCAACAGTGCC	NA	NA	NA	NA
WP_046788546.1|4860_5262_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015344976.1|5270_8222_-|transposase	Tn3-like element TnAs3 family transposase	transposase	A0A1B0V7H9	Salmonella_phage	73.5	0.0e+00
WP_000147567.1|8224_8785_-	recombinase family protein	NA	A0A1B0V7I5	Salmonella_phage	86.2	4.0e-49
WP_000993245.1|8910_9123_-	DUF3330 domain-containing protein	NA	NA	NA	NA	NA
WP_001446012.1|9085_9205_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001087807.1|9188_9425_-	broad-spectrum mercury transporter MerE	NA	NA	NA	NA	NA
WP_001277466.1|9421_9787_-	mercury resistance co-regulator MerD	NA	NA	NA	NA	NA
WP_000209296.1|9804_11490_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.1	1.8e-39
WP_000522996.1|11528_11954_-	organomercurial transporter MerC	NA	NA	NA	NA	NA
WP_000732275.1|11981_12257_-	mercury resistance system periplasmic binding protein MerP	NA	NA	NA	NA	NA
WP_004200999.1|12272_12638_-	mercuric ion transporter MerT	NA	NA	NA	NA	NA
WP_001166628.1|12709_13165_+	Hg(II)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_001776119.1|13424_13952_+	phospholipase D family protein	NA	A0A1B2LRT6	Wolbachia_phage	39.5	5.7e-21
WP_001776120.1|13984_14416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001776122.1|14895_15861_-	DUF1738 domain-containing protein	NA	A0A1V0EEV1	Caulobacter_phage	42.7	1.6e-58
WP_032419551.1|16068_16338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004152765.1|16330_17815_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	35.5	1.2e-31
WP_009483812.1|17814_18066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000776034.1|18223_18655_+	translesion error-prone DNA polymerase V autoproteolytic subunit	NA	A0A1W6JNS2	Morganella_phage	53.3	1.6e-29
WP_004118291.1|18654_19926_+	Y-family DNA polymerase	NA	F1C5A5	Cronobacter_phage	63.3	4.9e-151
WP_012600007.1|20007_20985_-	ParB/RepB/Spo0J family partition protein	NA	Q38420	Escherichia_phage	54.4	2.6e-88
WP_000368714.1|20981_22187_-	ParA family protein	NA	A0A077SL49	Escherichia_phage	69.6	2.4e-163
WP_000339857.1|22601_22871_+	hypothetical protein	NA	NA	NA	NA	NA
WP_100115263.1|22903_23101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_004118283.1|23227_24094_-	replication initiation protein	NA	A0A222YYK1	Escherichia_phage	31.1	1.5e-23
WP_000764642.1|24861_25119_+	hypothetical protein	NA	NA	NA	NA	NA
WP_138827844.1|25176_25956_-|integrase	tyrosine-type recombinase/integrase	integrase	I3WFA4	Macacine_betaherpesvirus	92.9	6.4e-53
WP_077250520.1|25952_26765_-	hypothetical protein	NA	NA	NA	NA	NA
WP_052433691.1|26828_27128_-	hypothetical protein	NA	NA	NA	NA	NA
WP_138827845.1|27332_27719_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001261282.1|27702_27933_+	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_016236302.1|27929_28346_+	type II toxin-antitoxin system VapC family toxin	NA	NA	NA	NA	NA
WP_001348075.1|28419_28656_+	AAA family ATPase	NA	NA	NA	NA	NA
28640:28656	attR	GGCACTGTTGCAAATAG	NA	NA	NA	NA
WP_001067855.1|28702_29407_+|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_138827846.1|29352_29637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_011977766.1|29809_30145_+	C2H2-type zinc finger protein	NA	NA	NA	NA	NA
WP_032445200.1|30695_30884_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001327128.1|31367_31562_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000807690.1|31562_32318_-	replication initiation protein RepE	NA	I3WF20	Macacine_betaherpesvirus	96.0	4.5e-136
WP_000861580.1|33329_33521_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001039463.1|33529_33916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_071549086.1|34461_34722_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001067855.1|34667_35372_-|transposase	IS6-like element IS26 family transposase	transposase	A0A077SL39	Escherichia_phage	100.0	1.8e-139
WP_071549088.1|35396_35909_+	restriction endonuclease	NA	NA	NA	NA	NA
WP_001749967.1|35913_36120_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001288432.1|36501_37935_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	50.6	7.0e-106
WP_001749969.1|37968_39177_-	type II site-specific deoxyribonuclease	NA	E5E3X4	Burkholderia_phage	42.5	1.2e-34
WP_024139167.1|39189_39402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001389365.1|39443_40208_-|transposase	IS6-like element IS6100 family transposase	transposase	A0A077SL39	Escherichia_phage	65.7	4.3e-86
