assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	1	212877-212961	1	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,RT	Orphan	TTCTACAGGCAATGCAAGTTGGGGTG	26	1	2	212903-212935|212903-212935	NZ_CP029198.1_1463382-1463414|NZ_CP029198.1_1553093-1553061	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,RT	NA|402aa|up_9|NZ_CP029198.1_202022_203228_+,NA|68aa|down_0|NZ_CP029198.1_213022_213226_-	NA|402aa|up_9|NZ_CP029198.1_202022_203228_+	NA	NA|402aa|up_8|NZ_CP029198.1_203228_204434_+	cd03794, GT4_WbuB-like, Escherichia coli WbuB and similar proteins	NA|186aa|up_7|NZ_CP029198.1_204444_205002_+	COG2148, WcaJ, Sugar transferases involved in lipopolysaccharide synthesis [Cell envelope biogenesis, outer membrane]	NA|296aa|up_6|NZ_CP029198.1_205001_205889_+	cd05232, UDP_G4E_4_SDR_e, UDP-glucose 4 epimerase, subgroup 4, extended (e) SDRs	NA|421aa|up_5|NZ_CP029198.1_205942_207205_+	COG0677, WecC, UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]	NA|382aa|up_4|NZ_CP029198.1_207281_208427_+	COG0381, WecB, UDP-N-acetylglucosamine 2-epimerase [Cell envelope biogenesis, outer membrane]	NA|109aa|up_3|NZ_CP029198.1_208491_208818_-	PRK13313, PRK13313, staphylobilin-forming heme oxygenase IsdI	NA|128aa|up_2|NZ_CP029198.1_208824_209208_-	pfam04304, DUF454, Protein of unknown function (DUF454)	NA|496aa|up_1|NZ_CP029198.1_209634_211122_+	cd07117, ALDH_StaphAldA1, Uncharacterized Staphylococcus aureus AldA1 (SACOL0154) aldehyde dehydrogenase-like	NA|320aa|up_0|NZ_CP029198.1_211768_212728_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|68aa|down_0|NZ_CP029198.1_213022_213226_-	NA	NA|171aa|down_1|NZ_CP029198.1_213404_213917_+	pfam14026, DUF4242, Protein of unknown function (DUF4242)	NA|247aa|down_2|NZ_CP029198.1_214258_214999_+	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|324aa|down_3|NZ_CP029198.1_215012_215984_+	cd13553, PBP2_NrtA_CpmA_like, Substrate binding domain of ABC-type nitrate/bicarbonate transporters, a member of the type 2 periplasmic binding fold superfamily	NA|254aa|down_4|NZ_CP029198.1_215980_216742_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|344aa|down_5|NZ_CP029198.1_216754_217786_+	COG1960, CaiA, Acyl-CoA dehydrogenases [Lipid metabolism]	NA|120aa|down_6|NZ_CP029198.1_218002_218362_+	COG5609, COG5609, Uncharacterized conserved protein [Function unknown]	NA|342aa|down_7|NZ_CP029198.1_218534_219560_+	PRK07574, PRK07574, NAD-dependent formate dehydrogenase	NA|417aa|down_8|NZ_CP029198.1_219945_221196_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|2392aa|down_9|NZ_CP029198.1_221642_228818_+	PRK12467, PRK12467, peptide synthase; Provisional
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	2	453190-453291	2	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,RT	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,RT	NA|128aa|up_8|NZ_CP029198.1_444263_444647_-,NA|33aa|up_2|NZ_CP029198.1_450894_450993_+,NA|86aa|up_1|NZ_CP029198.1_451203_451461_-,NA|221aa|down_1|NZ_CP029198.1_454381_455044_-	NA|194aa|up_9|NZ_CP029198.1_443616_444198_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_8|NZ_CP029198.1_444263_444647_-	NA	NA|209aa|up_7|NZ_CP029198.1_444916_445543_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|508aa|up_6|NZ_CP029198.1_445986_447510_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_5|NZ_CP029198.1_447525_448095_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_4|NZ_CP029198.1_448586_449342_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_3|NZ_CP029198.1_449421_450810_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|33aa|up_2|NZ_CP029198.1_450894_450993_+	NA	NA|86aa|up_1|NZ_CP029198.1_451203_451461_-	NA	NA|440aa|up_0|NZ_CP029198.1_451656_452976_+	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|319aa|down_0|NZ_CP029198.1_453307_454264_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|221aa|down_1|NZ_CP029198.1_454381_455044_-	NA	NA|136aa|down_2|NZ_CP029198.1_455186_455594_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP029198.1_456106_456685_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP029198.1_456684_457953_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP029198.1_457990_459457_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP029198.1_459481_461023_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP029198.1_461090_462284_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP029198.1_462310_462511_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NZ_CP029198.1_463008_463239_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	3	872342-872420	3	CRISPRCasFinder	no	cas3	DinG,WYL,cas3,DEDDh,csa3,RT	Unclear	TGTAGAATTTCTTTTCGAAATTCT	24	1	3	872366-872396|872366-872396|872366-872396	NZ_CP029198.1_336631-336601|NZ_CP029198.1_336576-336546|NZ_CP029198.1_1815880-1815910	NA	1	1	Unclear	DinG,WYL,cas3,DEDDh,csa3,RT	NA|35aa|up_7|NZ_CP029198.1_863218_863323_+,NA|36aa|up_5|NZ_CP029198.1_864755_864863_+,NA	NA|191aa|up_9|NZ_CP029198.1_859659_860232_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_8|NZ_CP029198.1_860645_863177_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_7|NZ_CP029198.1_863218_863323_+	NA	NA|370aa|up_6|NZ_CP029198.1_863491_864602_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_5|NZ_CP029198.1_864755_864863_+	NA	NA|280aa|up_4|NZ_CP029198.1_865010_865850_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_3|NZ_CP029198.1_866023_866674_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_2|NZ_CP029198.1_866670_866907_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP029198.1_867175_869161_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP029198.1_869168_872015_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP029198.1_872678_873611_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP029198.1_873616_874456_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP029198.1_874463_874949_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP029198.1_874956_876396_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP029198.1_876462_877398_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_5|NZ_CP029198.1_878166_879078_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_6|NZ_CP029198.1_879074_880070_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_7|NZ_CP029198.1_880180_881125_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_8|NZ_CP029198.1_881688_882276_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_9|NZ_CP029198.1_882518_883421_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	4	877800-877890	4	CRISPRCasFinder	no	cas3	DinG,WYL,cas3,DEDDh,csa3,RT	Unclear	TCTGTGTTGGGGCCCACACCCCAACTCGCATTG	33	1	14	877833-877857|877833-877857|877833-877857|877833-877857|877833-877857|877833-877857|877833-877857|877833-877857|877833-877857|877833-877857|877833-877857|877833-877857|877833-877857|877833-877857	NZ_CP029198.1_212885-212861|NZ_CP029198.1_336547-336523|NZ_CP029198.1_336657-336633|NZ_CP029198.1_703343-703319|NZ_CP029198.1_1463306-1463282|NZ_CP029198.1_1794697-1794673|NZ_CP029198.1_830492-830516|NZ_CP029198.1_937049-937073|NZ_CP029198.1_1778810-1778834|NZ_CP029198.1_2116944-2116968|NZ_CP029198.1_336602-336578|NZ_CP029198.1_1008423-1008447|NZ_CP029198.1_1815735-1815759|NZ_CP029198.1_1815968-1815992	NA	1	1	Unclear	DinG,WYL,cas3,DEDDh,csa3,RT	NA,NA|61aa|down_6|NZ_CP029198.1_885004_885187_+	NA|280aa|up_9|NZ_CP029198.1_865010_865850_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|217aa|up_8|NZ_CP029198.1_866023_866674_+	pfam12917, HD_2, HD containing hydrolase-like enzyme	NA|79aa|up_7|NZ_CP029198.1_866670_866907_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP029198.1_867175_869161_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP029198.1_869168_872015_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP029198.1_872678_873611_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP029198.1_873616_874456_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP029198.1_874463_874949_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP029198.1_874956_876396_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP029198.1_876462_877398_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|down_0|NZ_CP029198.1_878166_879078_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|down_1|NZ_CP029198.1_879074_880070_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_2|NZ_CP029198.1_880180_881125_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_3|NZ_CP029198.1_881688_882276_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_4|NZ_CP029198.1_882518_883421_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_5|NZ_CP029198.1_884123_884753_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|61aa|down_6|NZ_CP029198.1_885004_885187_+	NA	NA|338aa|down_7|NZ_CP029198.1_885509_886523_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_8|NZ_CP029198.1_886575_887586_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_9|NZ_CP029198.1_887724_888915_+	PRK00073, pgk, phosphoglycerate kinase; Provisional
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	5	884994-885073	5	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,RT	Orphan	CAGCTTCTGTGTTGGGGCCCCGCC	24	1	6	885018-885049|885018-885049|885018-885049|885018-885049|885018-885049|885018-885049	NZ_CP029198.1_110390-110421|NZ_CP029198.1_937306-937337|NZ_CP029198.1_1794766-1794735|NZ_CP029198.1_2267788-2267757|NZ_CP029198.1_2661515-2661546|NZ_CP029198.1_1463490-1463459	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,RT	NA,NA|153aa|down_6|NZ_CP029198.1_893090_893549_+	NA|280aa|up_9|NZ_CP029198.1_873616_874456_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_8|NZ_CP029198.1_874463_874949_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_7|NZ_CP029198.1_874956_876396_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_6|NZ_CP029198.1_876462_877398_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|304aa|up_5|NZ_CP029198.1_878166_879078_+	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|332aa|up_4|NZ_CP029198.1_879074_880070_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|up_3|NZ_CP029198.1_880180_881125_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|up_2|NZ_CP029198.1_881688_882276_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|up_1|NZ_CP029198.1_882518_883421_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|up_0|NZ_CP029198.1_884123_884753_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|338aa|down_0|NZ_CP029198.1_885509_886523_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_1|NZ_CP029198.1_886575_887586_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_2|NZ_CP029198.1_887724_888915_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_3|NZ_CP029198.1_889036_889798_+	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|506aa|down_4|NZ_CP029198.1_889800_891318_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|435aa|down_5|NZ_CP029198.1_891447_892752_+	PRK00077, eno, enolase; Provisional	NA|153aa|down_6|NZ_CP029198.1_893090_893549_+	NA	NA|78aa|down_7|NZ_CP029198.1_893615_893849_+	COG1314, SecG, Preprotein translocase subunit SecG [Intracellular trafficking and secretion]	NA|247aa|down_8|NZ_CP029198.1_893964_894705_+	COG1647, COG1647, Esterase/lipase [General function prediction only]	NA|791aa|down_9|NZ_CP029198.1_894738_897111_+	TIGR02063, Ribonuclease_R, ribonuclease R
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	6	936976-937057	6	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,RT	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	1	937000-937033	NZ_CP029198.1_1463414-1463381	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,RT	NA|62aa|up_8|NZ_CP029198.1_932195_932381_+,NA|38aa|up_1|NZ_CP029198.1_935878_935992_+,NA	NA|165aa|up_9|NZ_CP029198.1_931504_931999_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|62aa|up_8|NZ_CP029198.1_932195_932381_+	NA	NA|141aa|up_7|NZ_CP029198.1_932397_932820_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP029198.1_932967_933684_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP029198.1_933766_934306_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP029198.1_934456_934777_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP029198.1_934920_935277_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP029198.1_935434_935815_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP029198.1_935878_935992_+	NA	NA|293aa|up_0|NZ_CP029198.1_935993_936872_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP029198.1_937668_938055_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP029198.1_938047_938344_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP029198.1_938593_939619_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP029198.1_939611_940307_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP029198.1_940324_941146_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP029198.1_941499_941694_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP029198.1_941927_942779_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP029198.1_943106_943868_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP029198.1_943965_945273_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP029198.1_945387_946629_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	7	2226701-2226782	7	CRISPRCasFinder	no	DEDDh	DinG,WYL,cas3,DEDDh,csa3,RT	Unclear	GGCCCCCACCCCAACTTACATTGT	24	1	5	2226725-2226758|2226725-2226758|2226725-2226758|2226725-2226758|2226725-2226758	NZ_CP029198.1_872341-872374|NZ_CP029198.1_1248371-1248338|NZ_CP029198.1_1908142-1908109|NZ_CP029198.1_1467755-1467788|NZ_CP029198.1_2937750-2937783	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,RT	NA|114aa|up_7|NZ_CP029198.1_2218445_2218787_+,NA|61aa|up_6|NZ_CP029198.1_2218990_2219173_+,NA|81aa|up_4|NZ_CP029198.1_2220266_2220509_+,NA|114aa|down_7|NZ_CP029198.1_2235922_2236264_-	NA|238aa|up_9|NZ_CP029198.1_2216778_2217492_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	DEDDh|311aa|up_8|NZ_CP029198.1_2217507_2218440_+	PRK06195, PRK06195, DNA polymerase III subunit epsilon; Validated	NA|114aa|up_7|NZ_CP029198.1_2218445_2218787_+	NA	NA|61aa|up_6|NZ_CP029198.1_2218990_2219173_+	NA	NA|328aa|up_5|NZ_CP029198.1_2219272_2220256_+	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|81aa|up_4|NZ_CP029198.1_2220266_2220509_+	NA	NA|346aa|up_3|NZ_CP029198.1_2220571_2221609_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|339aa|up_2|NZ_CP029198.1_2222727_2223744_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|352aa|up_1|NZ_CP029198.1_2223765_2224821_-	pfam07968, Leukocidin, Leukocidin/Hemolysin toxin family	NA|408aa|up_0|NZ_CP029198.1_2225256_2226480_+	PRK08588, PRK08588, succinyl-diaminopimelate desuccinylase; Reviewed	NA|436aa|down_0|NZ_CP029198.1_2226923_2228231_+	TIGR00933, Trk_system_potassium_uptake_protein_trkH	NA|241aa|down_1|NZ_CP029198.1_2229247_2229970_+	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|267aa|down_2|NZ_CP029198.1_2230138_2230939_-	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain	NA|391aa|down_3|NZ_CP029198.1_2231264_2232437_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|187aa|down_4|NZ_CP029198.1_2233058_2233619_+	cd15783, SA1633_like, Uncharacterized protein family conserved in Staphylococci	NA|235aa|down_5|NZ_CP029198.1_2234497_2235202_+	PRK13038, PRK13038, superantigen-like protein; Reviewed	NA|190aa|down_6|NZ_CP029198.1_2235356_2235926_-	COG3728, XtmA, Phage terminase, small subunit [DNA replication, recombination, and repair]	NA|114aa|down_7|NZ_CP029198.1_2235922_2236264_-	NA	NA|176aa|down_8|NZ_CP029198.1_2236266_2236794_-	COG5577, COG5577, Spore coat protein [Cell envelope biogenesis, outer membrane]	NA|73aa|down_9|NZ_CP029198.1_2236844_2237063_-	pfam16722, SAPIS-gp6, Pathogenicity island protein gp6 in Staphylococcus
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	8	2243679-2243767	8	CRISPRCasFinder	no		DinG,WYL,cas3,DEDDh,csa3,RT	Orphan	GTTTTTGACTGACTTCTCAATCA	23	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,RT	NA|114aa|up_9|NZ_CP029198.1_2237670_2238012_-,NA|127aa|up_7|NZ_CP029198.1_2239099_2239480_-,NA|50aa|up_3|NZ_CP029198.1_2242775_2242925_-,NA|49aa|up_2|NZ_CP029198.1_2242977_2243124_-,NA	NA|114aa|up_9|NZ_CP029198.1_2237670_2238012_-	NA	NA|214aa|up_8|NZ_CP029198.1_2238461_2239103_-	pfam16560, SAPI, Putative mobile pathogenicity island	NA|127aa|up_7|NZ_CP029198.1_2239099_2239480_-	NA	NA|570aa|up_6|NZ_CP029198.1_2239789_2241499_-	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair]	NA|290aa|up_5|NZ_CP029198.1_2241512_2242382_-	smart00942, PriCT_1, Primase C terminal 1 (PriCT-1)	NA|109aa|up_4|NZ_CP029198.1_2242446_2242773_-	pfam07342, DUF1474, Protein of unknown function (DUF1474)	NA|50aa|up_3|NZ_CP029198.1_2242775_2242925_-	NA	NA|49aa|up_2|NZ_CP029198.1_2242977_2243124_-	NA	NA|106aa|up_1|NZ_CP029198.1_2243120_2243438_-	TIGR01764, Probable_excisionase, DNA binding domain, excisionase family	NA|73aa|up_0|NZ_CP029198.1_2243442_2243661_-	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|225aa|down_0|NZ_CP029198.1_2243833_2244508_+	pfam13443, HTH_26, Cro/C1-type HTH DNA-binding domain	NA|391aa|down_1|NZ_CP029198.1_2244521_2245694_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|539aa|down_2|NZ_CP029198.1_2245762_2247379_-	PRK00013, groEL, chaperonin GroEL; Reviewed	NA|95aa|down_3|NZ_CP029198.1_2247454_2247739_-	PRK00364, groES, co-chaperonin GroES; Reviewed	NA|248aa|down_4|NZ_CP029198.1_2247913_2248657_+	pfam02517, Abi, CAAX protease self-immunity	NA|416aa|down_5|NZ_CP029198.1_2248681_2249929_-	PRK10819, PRK10819, transport protein TonB; Provisional	NA|209aa|down_6|NZ_CP029198.1_2250125_2250752_+	COG3560, FMR2, Predicted oxidoreductase related to nitroreductase [General function prediction only]	NA|262aa|down_7|NZ_CP029198.1_2251112_2251898_+	cd07583, nitrilase_5, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases)	NA|45aa|down_8|NZ_CP029198.1_2252497_2252632_-	PRK14752, PRK14752, delta-lysin family phenol-soluble modulin	NA|188aa|down_9|NZ_CP029198.1_2252867_2253431_+	COG4512, AgrB, Membrane protein putatively involved in post-translational modification of the autoinducing quorum-sensing peptide [Posttranslational modification, protein turnover, chaperones / Signal transduction mechanisms / Transcription]
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	9	2374031-2374111	9	CRISPRCasFinder	no	csa3	DinG,WYL,cas3,DEDDh,csa3,RT	Type I-A	CAACTTTAGTTGTTAGGGGCTCTT	24	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,RT	NA|77aa|up_5|NZ_CP029198.1_2368905_2369136_-,NA|364aa|up_0|NZ_CP029198.1_2372922_2374014_+,NA|35aa|down_0|NZ_CP029198.1_2374445_2374550_-,NA|61aa|down_1|NZ_CP029198.1_2374982_2375165_-,NA|53aa|down_2|NZ_CP029198.1_2375229_2375388_+,NA|31aa|down_3|NZ_CP029198.1_2375824_2375917_+	NA|237aa|up_9|NZ_CP029198.1_2364516_2365227_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP029198.1_2365347_2365791_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP029198.1_2365990_2366404_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP029198.1_2366860_2368234_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP029198.1_2368905_2369136_-	NA	NA|313aa|up_4|NZ_CP029198.1_2369166_2370105_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP029198.1_2370540_2371206_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP029198.1_2371357_2371678_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|326aa|up_1|NZ_CP029198.1_2371679_2372657_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP029198.1_2372922_2374014_+	NA	NA|35aa|down_0|NZ_CP029198.1_2374445_2374550_-	NA	NA|61aa|down_1|NZ_CP029198.1_2374982_2375165_-	NA	NA|53aa|down_2|NZ_CP029198.1_2375229_2375388_+	NA	NA|31aa|down_3|NZ_CP029198.1_2375824_2375917_+	NA	NA|286aa|down_4|NZ_CP029198.1_2376045_2376903_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_5|NZ_CP029198.1_2376970_2377753_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_6|NZ_CP029198.1_2377984_2379790_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_7|NZ_CP029198.1_2380470_2382009_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_8|NZ_CP029198.1_2382043_2384176_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_9|NZ_CP029198.1_2384187_2384622_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]
GCF_006088835.1_ASM608883v1	NZ_CP029198	Staphylococcus aureus strain aureus chromosome, complete genome	10	2386351-2386436	10	CRISPRCasFinder	no	csa3	DinG,WYL,cas3,DEDDh,csa3,RT	Type I-A	CCAACTGATTTTTGCGTATCATTAGT	26	0	0	NA	NA	NA	1	1	Orphan	DinG,WYL,cas3,DEDDh,csa3,RT	NA|61aa|up_9|NZ_CP029198.1_2374982_2375165_-,NA|53aa|up_8|NZ_CP029198.1_2375229_2375388_+,NA|31aa|up_7|NZ_CP029198.1_2375824_2375917_+,NA	NA|61aa|up_9|NZ_CP029198.1_2374982_2375165_-	NA	NA|53aa|up_8|NZ_CP029198.1_2375229_2375388_+	NA	NA|31aa|up_7|NZ_CP029198.1_2375824_2375917_+	NA	NA|286aa|up_6|NZ_CP029198.1_2376045_2376903_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|up_5|NZ_CP029198.1_2376970_2377753_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|up_4|NZ_CP029198.1_2377984_2379790_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|up_3|NZ_CP029198.1_2380470_2382009_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|up_2|NZ_CP029198.1_2382043_2384176_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|up_1|NZ_CP029198.1_2384187_2384622_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|up_0|NZ_CP029198.1_2384621_2385728_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|452aa|down_0|NZ_CP029198.1_2393769_2395125_-	PRK14316, glmM, phosphoglucosamine mutase; Provisional	NA|311aa|down_1|NZ_CP029198.1_2395151_2396084_-	COG4856, COG4856, Uncharacterized protein conserved in bacteria [Function unknown]	NA|270aa|down_2|NZ_CP029198.1_2396085_2396895_-	COG1624, COG1624, Uncharacterized conserved protein [Function unknown]	NA|303aa|down_3|NZ_CP029198.1_2397083_2397992_-	cd09989, Arginase, Arginase family	NA|355aa|down_4|NZ_CP029198.1_2404231_2405296_-	pfam10609, ParA, NUBPL iron-transfer P-loop NTPase	NA|481aa|down_5|NZ_CP029198.1_2405443_2406886_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|158aa|down_6|NZ_CP029198.1_2407208_2407682_-	pfam17080, SepA, Multidrug Resistance efflux pump	NA|448aa|down_7|NZ_CP029198.1_2407780_2409124_-	TIGR00711, Uncharacterized_MFS-type_transporter_YhcA, drug resistance transporter, EmrB/QacA subfamily	NA|228aa|down_8|NZ_CP029198.1_2409300_2409984_-	COG1272, COG1272, Predicted membrane protein, hemolysin III homolog [General function prediction only]	NA|396aa|down_9|NZ_CP029198.1_2410002_2411190_-	cd04193, UDPGlcNAc_PPase, UDPGlcNAc pyrophosphorylase catalayzes the synthesis of UDPGlcNAc
