The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP025453	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76341 chromosome, complete genome	4841410	929962	939310	4841410	protease,integrase	Dickeya_phage(16.67%)	9	931213:931227	944874:944888
WP_001201750.1|929962_931081_+	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.4e-08
WP_000125885.1|931077_933024_+	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	41.9	2.0e-39
931213:931227	attL	GGAAAATCAACGCTG	NA	NA	NA	NA
WP_000447499.1|933153_933375_-	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000520789.1|933698_934019_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000934057.1|934049_936326_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	1.1e-164
WP_071591100.1|936521_936851_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001747668.1|936822_937299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001117984.1|938573_938771_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001747671.1|938932_939310_-|integrase	integrase	integrase	A0A077KET4	Ralstonia_phage	40.2	1.0e-19
944874:944888	attR	CAGCGTTGATTTTCC	NA	NA	NA	NA
>prophage 2
NZ_CP025453	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76341 chromosome, complete genome	4841410	1083549	1120785	4841410	plate,transposase	Enterobacteria_phage(20.0%)	29	NA	NA
WP_100148601.1|1083549_1084805_-|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	33.9	2.4e-17
WP_000623370.1|1085085_1085544_-	DUF1311 domain-containing protein	NA	NA	NA	NA	NA
WP_001227394.1|1085667_1086039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001022123.1|1086047_1086488_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000928422.1|1086507_1087020_-	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001216386.1|1087060_1087507_-	DUF1240 domain-containing protein	NA	NA	NA	NA	NA
WP_006496204.1|1087535_1087667_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001139255.1|1089951_1090794_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000002328.1|1090817_1091297_-	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000076070.1|1091315_1092677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001137105.1|1092687_1096149_-	type VI secretion system membrane subunit TssM	NA	NA	NA	NA	NA
WP_000365805.1|1096227_1097640_-	type VI secretion system protein TssA	NA	NA	NA	NA	NA
WP_000089147.1|1097641_1098379_-	type VI secretion system-associated protein TagO	NA	NA	NA	NA	NA
WP_000614296.1|1098375_1101111_-	type VI secretion system ATPase TssH	NA	K4FB40	Cronobacter_phage	31.5	2.9e-84
WP_000343978.1|1101123_1101882_-	DotU family type IV/VI secretion system protein	NA	NA	NA	NA	NA
WP_000246455.1|1101886_1103218_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_130549539.1|1103220_1103724_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_000796942.1|1103750_1105037_-	type VI secretion system-associated FHA domain protein TagH	NA	NA	NA	NA	NA
WP_000509052.1|1105061_1106150_-|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000393863.1|1106113_1107967_-|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_000611701.1|1107971_1108388_-|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_001747654.1|1108384_1109857_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000524265.1|1109905_1110118_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000031252.1|1110147_1110651_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_001142966.1|1111279_1111798_+	Hcp family type VI secretion system effector	NA	NA	NA	NA	NA
WP_000103453.1|1112020_1114162_+	type VI secretion system tip protein VgrG	NA	A0A077K8Q4	Ralstonia_phage	25.4	2.9e-23
WP_000014621.1|1114230_1118397_+	RHS repeat protein	NA	A0A2H4JFP5	uncultured_Caudovirales_phage	40.6	1.4e-21
WP_000739389.1|1118464_1119430_+	Sel1 repeat protein	NA	NA	NA	NA	NA
WP_109188131.1|1119623_1120785_+|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	40.8	1.2e-47
>prophage 3
NZ_CP025453	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76341 chromosome, complete genome	4841410	2127584	2138091	4841410		Enterobacteria_phage(37.5%)	10	NA	NA
WP_000126349.1|2127584_2128898_-	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_000565903.1|2128924_2130004_-	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	1.7e-16
WP_000648785.1|2130008_2130782_-	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_000018219.1|2130797_2131772_-	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000973710.1|2131777_2132329_-	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.6	1.3e-52
WP_000857531.1|2132329_2133208_-	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	65.5	2.1e-108
WP_001023665.1|2133255_2134155_-	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	1.1e-29
WP_000697849.1|2134154_2135240_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.6	1.0e-101
WP_000981469.1|2135616_2136510_-	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_001111843.1|2136687_2138091_-	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	3.1e-21
>prophage 4
NZ_CP025453	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76341 chromosome, complete genome	4841410	2214121	2223292	4841410	tRNA	Enterobacteria_phage(66.67%)	10	NA	NA
WP_000195330.1|2214121_2216155_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	1.0e-54
WP_000703143.1|2216395_2216854_+	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	71.9	2.4e-52
WP_001197951.1|2217025_2217556_+	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000950413.1|2217612_2218080_-	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_000598637.1|2218126_2218846_-	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000272851.1|2218842_2220528_-	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	6.2e-279
WP_001240418.1|2220750_2221482_+	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_001261696.1|2221541_2221649_+	protein YohO	NA	NA	NA	NA	NA
WP_000824850.1|2221629_2222361_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000569166.1|2222344_2223292_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	31.2	1.7e-23
>prophage 5
NZ_CP025453	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76341 chromosome, complete genome	4841410	2692753	2790091	4841410	integrase,capsid,portal,terminase,tail,head,tRNA,lysis,plate	Salmonella_phage(74.07%)	92	2771786:2771801	2799680:2799695
WP_000083343.1|2692753_2693491_-|tRNA	tRNA(1)(Val) (adenine(37)-N(6))-methyltransferase TrmN	tRNA	NA	NA	NA	NA
WP_000219174.1|2693621_2694956_+	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
WP_001747585.1|2694973_2695873_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000188414.1|2695975_2696563_+	cysteine/O-acetylserine transporter	NA	NA	NA	NA	NA
WP_000627811.1|2696624_2697008_-	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000179975.1|2697326_2698016_+	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	50.0	2.1e-55
WP_000997368.1|2698131_2699169_-|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_001098732.1|2699372_2699792_+	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000183644.1|2699864_2700545_+	DTW domain-containing protein	NA	NA	NA	NA	NA
WP_000082651.1|2700598_2703259_+	protein lysine acetyltransferase	NA	NA	NA	NA	NA
WP_000949286.1|2703373_2704729_+	CDP-diacylglycerol--serine O-phosphatidyltransferase	NA	NA	NA	NA	NA
WP_001264468.1|2704771_2705095_+	YfiM family lipoprotein	NA	NA	NA	NA	NA
WP_000807814.1|2705091_2706393_-	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.1	3.4e-43
WP_000985658.1|2706496_2706952_-	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	49.3	8.6e-34
WP_001235092.1|2713007_2715581_-	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
WP_000992634.1|2715710_2716442_-	polyphenol oxidase	NA	NA	NA	NA	NA
WP_000079130.1|2716438_2717419_-	23S rRNA pseudouridine(1911/1915/1917) synthase RluD	NA	NA	NA	NA	NA
WP_000197660.1|2717550_2718288_+	outer membrane protein assembly factor BamD	NA	NA	NA	NA	NA
WP_000178449.1|2718559_2718898_+	ribosome-associated translation inhibitor RaiA	NA	NA	NA	NA	NA
WP_010989056.1|2719001_2719049_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000200080.1|2719148_2720309_+	bifunctional chorismate mutase/prephenate dehydratase	NA	NA	NA	NA	NA
WP_000210991.1|2720269_2721178_-	SMP-30/gluconolactonase/LRE family protein	NA	NA	NA	NA	NA
WP_000225191.1|2721235_2722357_-	bifunctional chorismate mutase/prephenate dehydrogenase	NA	NA	NA	NA	NA
WP_001168062.1|2722366_2723437_-	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
WP_001212379.1|2723876_2724395_+	YfiR family protein	NA	NA	NA	NA	NA
WP_001030981.1|2724387_2725608_+	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	36.2	5.8e-08
WP_000065257.1|2725764_2726112_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_000469804.1|2726152_2726920_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_000043266.1|2726964_2727513_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_000256453.1|2727531_2727780_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_000460052.1|2728032_2729394_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_001537507.1|2729559_2730351_+	inner membrane protein YpjD	NA	NA	NA	NA	NA
WP_127172650.1|2730370_2731657_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_001294018.1|2731777_2732383_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001518875.1|2732417_2733008_-	nucleotide exchange factor GrpE	NA	NA	NA	NA	NA
WP_001059155.1|2733131_2734010_+	NAD(+) kinase	NA	NA	NA	NA	NA
WP_000880958.1|2734095_2735757_+	DNA repair protein RecN	NA	NA	NA	NA	NA
WP_001203445.1|2735905_2736244_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA	NA
WP_001112990.1|2736409_2736700_-	RnfH family protein	NA	NA	NA	NA	NA
WP_000242603.1|2736689_2737166_-	type II toxin-antitoxin system RatA family toxin	NA	NA	NA	NA	NA
WP_001518569.1|2737315_2737798_+	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
WP_001237691.1|2738412_2749887_+	biofilm-associated protein BapA	NA	NA	NA	NA	NA
WP_000533865.1|2749951_2751361_+	TolC family outer membrane protein	NA	NA	NA	NA	NA
WP_000196133.1|2751357_2753538_+	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	1.3e-18
WP_072101449.1|2753545_2754709_+	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_000980498.1|2755260_2755479_-	hypothetical protein	NA	Q53ZE7	Salmonella_virus	100.0	2.1e-38
WP_006501166.1|2755547_2756648_-	phage late control D family protein	NA	E5G6Q3	Salmonella_phage	95.6	9.0e-194
WP_000980409.1|2756644_2757130_-|tail	phage tail protein	tail	E5G6Q2	Salmonella_phage	99.2	8.3e-67
WP_006501165.1|2757126_2759934_-|tail	phage tail tape measure protein	tail	E5G6Q1	Salmonella_phage	98.3	0.0e+00
WP_000763316.1|2759926_2760046_-|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	100.0	1.8e-15
WP_001280962.1|2760060_2760363_-|tail	phage tail assembly protein	tail	A0A1S6KZZ9	Salmonella_phage	100.0	2.5e-45
WP_001207653.1|2760417_2760933_-|tail	phage major tail tube protein	tail	E5G6P8	Salmonella_phage	99.4	2.7e-92
WP_006501164.1|2760942_2762115_-|tail	phage tail sheath protein	tail	A0A1S6KZY7	Salmonella_phage	99.5	3.7e-222
WP_006501163.1|2762217_2762775_-	serine-type DNA invertase Fin	NA	A0A1S6L009	Salmonella_phage	98.9	9.4e-99
WP_077918804.1|2762744_2763824_+	hypothetical protein	NA	A0A1B0V7G4	Salmonella_phage	91.8	1.2e-182
WP_001287104.1|2763830_2764238_+|tail	tail assembly protein	tail	A0A1B0V844	Salmonella_phage	85.2	6.7e-62
WP_006501158.1|2764241_2764859_-|tail	tail fiber assembly protein	tail	A0A1B0VCD0	Salmonella_phage	84.1	1.6e-94
WP_045791118.1|2764828_2766403_-|tail	tail protein	tail	A0A1S6KZZ8	Salmonella_phage	60.9	3.3e-157
WP_001086802.1|2766399_2767005_-|tail	phage tail protein I	tail	A0A1S6L000	Salmonella_phage	98.5	1.1e-116
WP_006493508.1|2766997_2767906_-|plate	baseplate assembly protein	plate	E5G6N8	Salmonella_phage	97.7	7.2e-157
WP_006493507.1|2767892_2768252_-|plate	baseplate assembly protein W	plate	E5G6N7	Salmonella_phage	92.4	6.3e-56
WP_000993750.1|2768248_2768827_-|plate	phage baseplate assembly protein V	plate	E5G6N6	Salmonella_phage	99.0	1.5e-107
WP_000343939.1|2768895_2769342_-	phage virion morphogenesis protein	NA	A0A1S6L001	Salmonella_phage	89.7	3.8e-66
WP_001039964.1|2769334_2769766_-|tail	phage tail protein	tail	A0A1S6KZY0	Salmonella_phage	95.1	4.0e-73
WP_001648763.1|2769861_2770290_-|lysis	LysB family phage lysis regulatory protein	lysis	A0A1S6KZX8	Salmonella_phage	95.0	2.6e-64
WP_000871620.1|2770286_2770661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006493502.1|2770665_2771175_-	lysozyme	NA	A0A1S6KZY9	Salmonella_phage	97.6	3.2e-93
WP_000171565.1|2771155_2771371_-	hypothetical protein	NA	E5G6N0	Salmonella_phage	100.0	5.9e-33
WP_000868184.1|2771374_2771578_-|tail	tail protein X	tail	E5G6M9	Salmonella_phage	100.0	3.8e-34
WP_000673541.1|2771577_2772042_-|head	head completion/stabilization protein	head	A0A1S6KZW8	Salmonella_phage	96.8	7.9e-83
2771786:2771801	attL	TTGCCGTCCAGCATAT	NA	NA	NA	NA
WP_000059169.1|2772135_2772786_-	hypothetical protein	NA	A0A1S6KZX1	Salmonella_phage	98.6	1.6e-113
WP_000730754.1|2772789_2773857_-|capsid	phage major capsid protein, P2 family	capsid	A0A1S6KZZ3	Salmonella_phage	98.0	2.8e-192
WP_006493498.1|2773873_2774707_-|capsid	GPO family capsid scaffolding protein	capsid	E5G6M5	Salmonella_phage	97.1	1.1e-127
WP_006493495.1|2774849_2776616_+|terminase	terminase ATPase subunit family protein	terminase	A0A1S6KZW3	Salmonella_phage	96.6	0.0e+00
WP_006493493.1|2776615_2777650_+|portal	phage portal protein	portal	E5G6M3	Salmonella_phage	94.8	4.1e-188
WP_006493491.1|2777696_2778614_-	restriction endonuclease	NA	NA	NA	NA	NA
WP_006493490.1|2778576_2779779_-	DNA cytosine methyltransferase	NA	M1PSQ0	Streptococcus_phage	37.1	5.6e-64
WP_001749760.1|2780109_2780298_-	hypothetical protein	NA	E5G6M0	Salmonella_phage	91.7	5.7e-24
WP_001749759.1|2780435_2780663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006493489.1|2780682_2783076_-	replication endonuclease	NA	A0A1S6L028	Salmonella_phage	88.8	0.0e+00
WP_006493488.1|2783072_2783930_-	DNA adenine methylase	NA	E5G6L8	Salmonella_phage	69.8	4.6e-113
WP_000785514.1|2783926_2784154_-	TraR/DksA family transcriptional regulator	NA	E5G6L7	Salmonella_phage	66.7	5.4e-21
WP_001178763.1|2784153_2784381_-	DUF2732 domain-containing protein	NA	A0A0M3UL87	Salmonella_phage	64.0	8.1e-17
WP_000963476.1|2784448_2784790_-	DUF5347 domain-containing protein	NA	E5G6L5	Salmonella_phage	84.1	6.0e-48
WP_001528723.1|2784753_2784948_-	DUF2724 domain-containing protein	NA	E5G6L4	Salmonella_phage	84.1	5.3e-25
WP_000794278.1|2785032_2785308_+	hypothetical protein	NA	NA	NA	NA	NA
WP_006493486.1|2785394_2785904_-	phage regulatory CII family protein	NA	A0A1S6L008	Salmonella_phage	93.5	3.5e-84
WP_000102106.1|2785936_2786179_-	Rha family transcriptional regulator	NA	A0A1S6KZZ6	Salmonella_phage	98.8	2.3e-38
WP_023136550.1|2786298_2786931_+	phage repressor protein CI	NA	A0A1S6KZZ7	Salmonella_phage	96.7	5.8e-113
WP_006493482.1|2786932_2787949_+|integrase	site-specific integrase	integrase	A0A1S6L016	Salmonella_phage	95.0	5.0e-191
WP_006493480.1|2787955_2789182_+	hypothetical protein	NA	E5G6K9	Salmonella_phage	65.4	3.6e-151
WP_001650427.1|2789509_2790091_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A1B5FPC6	Escherichia_phage	55.8	1.5e-51
2799680:2799695	attR	ATATGCTGGACGGCAA	NA	NA	NA	NA
>prophage 6
NZ_CP025453	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76341 chromosome, complete genome	4841410	3227066	3235074	4841410		Escherichia_phage(50.0%)	15	NA	NA
WP_001696194.1|3227066_3227288_-	hypothetical protein	NA	G8C7U9	Escherichia_phage	54.1	5.3e-13
WP_001696193.1|3227284_3227500_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006859639.1|3227548_3227962_-	hypothetical protein	NA	A0A076G611	Escherichia_phage	79.0	3.1e-30
WP_000360280.1|3227972_3228170_-	hypothetical protein	NA	A0A1I9SEY0	Klebsiella_phage	86.2	1.3e-31
WP_000013837.1|3228171_3228393_-	hypothetical protein	NA	K7P6F8	Enterobacteria_phage	74.6	4.5e-20
WP_001696190.1|3228394_3228793_-	hypothetical protein	NA	A0A1U9AJ59	Stx1_converting_phage	62.6	1.4e-32
WP_001696189.1|3228789_3229305_-	hypothetical protein	NA	A0A0P0ZBM8	Stx2-converting_phage	99.4	5.4e-101
WP_031602497.1|3229306_3229906_-	ead/Ea22-like family protein	NA	A0A2D1GLY5	Escherichia_phage	64.3	9.0e-55
WP_001696187.1|3229892_3230114_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001696186.1|3230110_3230323_-	ead/Ea22-like family protein	NA	A0A2D1GLY5	Escherichia_phage	82.2	1.7e-13
WP_001696184.1|3230502_3230751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_006859641.1|3230747_3231326_-	DUF2857 domain-containing protein	NA	NA	NA	NA	NA
WP_001696183.1|3231322_3232054_-	DUF2786 domain-containing protein	NA	L7P7W8	Pseudomonas_phage	36.6	1.4e-17
WP_001696182.1|3232046_3233696_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000004195.1|3233685_3235074_-	replicative DNA helicase	NA	O80281	Escherichia_phage	50.1	5.8e-113
>prophage 7
NZ_CP025453	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76341 chromosome, complete genome	4841410	3675697	3722741	4841410	tail,tRNA,plate	Burkholderia_phage(40.91%)	49	NA	NA
WP_001182229.1|3675697_3676696_-|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	tRNA	NA	NA	NA	NA
WP_001039322.1|3676783_3678094_-	conjugal transfer protein TraF	NA	NA	NA	NA	NA
WP_000416271.1|3678340_3678856_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA	NA
WP_001030592.1|3678954_3679164_-	CsbD family protein	NA	NA	NA	NA	NA
WP_001575282.1|3679185_3679299_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001128112.1|3679295_3680621_-	MATE family efflux transporter DinF	NA	NA	NA	NA	NA
WP_000646079.1|3680799_3681408_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
WP_000002900.1|3681516_3681885_-	diacylglycerol kinase	NA	NA	NA	NA	NA
WP_000017360.1|3682055_3684476_+	glycerol-3-phosphate 1-O-acyltransferase PlsB	NA	NA	NA	NA	NA
WP_000455249.1|3684574_3685447_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA	NA
WP_000019230.1|3685460_3685958_-	chorismate lyase	NA	NA	NA	NA	NA
WP_000782497.1|3686138_3687056_-	maltose operon protein MalM	NA	NA	NA	NA	NA
WP_000973644.1|3687219_3688578_-	maltoporin	NA	NA	NA	NA	NA
WP_000179176.1|3688666_3689776_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
WP_000695420.1|3690137_3691328_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA	NA
WP_000382563.1|3691459_3693004_+	maltose ABC transporter permease MalF	NA	NA	NA	NA	NA
WP_001252085.1|3693018_3693909_+	maltose ABC transporter permease MalG	NA	NA	NA	NA	NA
WP_000982752.1|3694074_3694485_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA	NA
WP_000750800.1|3694627_3696724_-	YjbH domain-containing protein	NA	NA	NA	NA	NA
WP_000977889.1|3696723_3697461_-	capsule biosynthesis GfcC family protein	NA	NA	NA	NA	NA
WP_125469230.1|3697457_3698126_-	YjbF family lipoprotein	NA	NA	NA	NA	NA
WP_023165043.1|3698159_3698402_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000790027.1|3698845_3700495_-	glucose-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000136394.1|3700839_3702189_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA	NA
WP_000615248.1|3702319_3702667_-	DNA-binding protein	NA	Q6QIE8	Burkholderia_phage	51.5	4.9e-21
WP_001226439.1|3703243_3703531_+	membrane protein	NA	Q6QIC8	Burkholderia_phage	48.1	3.0e-16
WP_001270445.1|3703533_3704139_+	transglycosylase SLT domain-containing protein	NA	Q5ZQZ1	Pseudomonas_phage	61.0	5.9e-62
WP_000777266.1|3704151_3704466_+	membrane protein	NA	Q6QIC4	Burkholderia_phage	49.1	6.4e-20
WP_000449437.1|3704624_3705080_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000875314.1|3705076_3705274_+	hypothetical protein	NA	Q6QIB1	Burkholderia_phage	52.9	8.6e-07
WP_000729845.1|3705263_3706691_+|tail	phage tail sheath family protein	tail	A4JWK5	Burkholderia_virus	71.6	2.8e-195
WP_000907494.1|3706690_3707215_+|tail	phage major tail tube protein	tail	Q6QIA9	Burkholderia_phage	69.5	2.8e-68
WP_001003644.1|3707266_3707584_+|tail	phage tail assembly protein	tail	NA	NA	NA	NA
WP_001185654.1|3707543_3707672_+|tail	GpE family phage tail protein	tail	NA	NA	NA	NA
WP_001262488.1|3707768_3710123_+|tail	phage tail tape measure protein	tail	A4JWL0	Burkholderia_virus	30.6	3.1e-66
WP_000271418.1|3710122_3711076_+	chemotaxis protein	NA	A4JWL1	Burkholderia_virus	50.8	3.9e-36
WP_001269716.1|3711075_3711285_+	membrane protein	NA	A4JWL2	Burkholderia_virus	60.3	9.8e-17
WP_000818151.1|3711272_3712316_+	phage late control D family protein	NA	Q6QIA2	Burkholderia_phage	45.3	8.5e-77
WP_000679392.1|3712325_3713048_+|plate	phage baseplate assembly protein V	plate	A0A067ZIM2	Vibrio_phage	42.0	3.9e-12
WP_000593184.1|3713375_3713738_+	GtrA family protein	NA	U5P0S6	Shigella_phage	70.8	9.6e-44
WP_000703629.1|3713734_3714664_+	glycosyltransferase family 2 protein	NA	S5FKN0	Shigella_phage	84.1	7.9e-151
WP_000632050.1|3714663_3716211_+	hypothetical protein	NA	B9UDL6	Salmonella_phage	29.9	2.5e-48
WP_001093501.1|3716374_3716734_+|plate	baseplate protein	plate	Q6QIA0	Burkholderia_phage	64.2	2.8e-35
WP_000951740.1|3716724_3717840_+|plate	baseplate protein	plate	Q6QI99	Burkholderia_phage	51.2	2.9e-99
WP_000359502.1|3717832_3718465_+|tail	phage tail protein I	tail	Q6QI98	Burkholderia_phage	56.4	1.1e-23
WP_001747515.1|3718467_3720213_+|tail	tail protein	tail	A0A0M3ULF6	Salmonella_phage	51.7	1.2e-51
WP_023785434.1|3720217_3720823_+	DUF4376 domain-containing protein	NA	NA	NA	NA	NA
WP_000084338.1|3720819_3721275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000587738.1|3722012_3722741_+	hypothetical protein	NA	A0A077SLK3	Escherichia_phage	37.3	5.6e-35
>prophage 8
NZ_CP025453	Salmonella enterica subsp. enterica serovar Agona strain USDA-ARS-USMARC-76341 chromosome, complete genome	4841410	4677965	4722346	4841410	tail,integrase,tRNA,transposase	Enterobacteria_phage(18.18%)	47	4703763:4703778	4720310:4720325
WP_000252549.1|4677965_4678412_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_000047544.1|4678486_4678873_-	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_000148570.1|4678949_4679411_-	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_000013055.1|4679423_4680359_-	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	39.2	6.5e-52
WP_000249504.1|4680394_4680496_-	pyr operon leader peptide	NA	NA	NA	NA	NA
WP_001518160.1|4680475_4680616_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000666051.1|4680585_4681074_-	arginine repressor	NA	NA	NA	NA	NA
WP_000514438.1|4681260_4682664_-	YfcC family protein	NA	NA	NA	NA	NA
WP_000237031.1|4682719_4683724_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000428749.1|4683835_4684768_-	carbamate kinase	NA	NA	NA	NA	NA
WP_000410847.1|4684778_4685999_-	arginine deiminase	NA	NA	NA	NA	NA
WP_000583453.1|4686674_4687127_+	YhcH/YjgK/YiaL family protein	NA	NA	NA	NA	NA
WP_000103041.1|4687200_4688205_-	ornithine carbamoyltransferase	NA	NA	NA	NA	NA
WP_000002940.1|4688370_4688787_+	ribonuclease E inhibitor RraB	NA	NA	NA	NA	NA
WP_000218447.1|4688798_4689611_+|tRNA	tRNA isopentenyl-2-thiomethyl-A-37 hydroxylase MiaE	tRNA	NA	NA	NA	NA
WP_000826193.1|4689855_4690344_-	DUF3617 domain-containing protein	NA	NA	NA	NA	NA
WP_001747736.1|4690451_4690955_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_001066989.1|4691149_4692337_+	DUF898 domain-containing protein	NA	NA	NA	NA	NA
WP_000416337.1|4692478_4695334_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.4	9.3e-142
WP_000190703.1|4695333_4695816_-	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_000397158.1|4695913_4697425_-	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.7	8.3e-49
WP_000584132.1|4697818_4698919_+	LPS export ABC transporter permease LptF	NA	NA	NA	NA	NA
WP_001182242.1|4698918_4700001_+	LPS export ABC transporter permease LptG	NA	NA	NA	NA	NA
WP_001244060.1|4700196_4701195_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001128356.1|4701258_4702578_-	gnt-II system L-idonate transporter	NA	NA	NA	NA	NA
WP_000998688.1|4702639_4703404_-	gluconate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_000453362.1|4703428_4704460_-	L-idonate 5-dehydrogenase	NA	NA	NA	NA	NA
4703763:4703778	attL	TTTTCTGCTTTCCAGC	NA	NA	NA	NA
WP_000896759.1|4704676_4705207_+	gluconokinase	NA	NA	NA	NA	NA
WP_000152567.1|4705234_4706254_-	NAD(P)-dependent alcohol dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	30.5	3.9e-42
WP_000772651.1|4706725_4707988_+|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	Q7M297	Enterobacteria_phage	35.6	2.8e-66
WP_001066528.1|4708018_4708657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000455466.1|4709027_4709258_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_071591111.1|4709319_4709904_+	host cell division inhibitor Icd-like protein	NA	NA	NA	NA	NA
WP_001247004.1|4709896_4710256_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001027149.1|4710287_4710572_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001075576.1|4710568_4710952_+	DUF5375 family protein	NA	NA	NA	NA	NA
WP_000211874.1|4710948_4713621_+	DUF927 domain-containing protein	NA	A0A1B0VP75	Pseudomonas_phage	34.4	2.1e-58
WP_001066192.1|4714021_4714783_+	septation initiation protein	NA	NA	NA	NA	NA
WP_001185338.1|4714782_4715055_+	ogr/Delta-like zinc finger family protein	NA	A0A2I8TV89	Erwinia_phage	46.9	6.3e-08
WP_006501160.1|4715232_4715412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001292737.1|4715431_4715743_+|tail	phage tail assembly protein	tail	E5G6P9	Salmonella_phage	66.0	2.4e-27
WP_001747644.1|4715757_4715877_+|tail	GpE family phage tail protein	tail	E5G6Q0	Salmonella_phage	87.2	2.2e-13
WP_001280979.1|4715869_4718503_+|tail	phage tail tape measure protein	tail	E5FFG5	Burkholderia_phage	31.3	5.8e-106
WP_000254751.1|4719804_4720053_+	ribbon-helix-helix protein, CopG family	NA	NA	NA	NA	NA
WP_000016244.1|4720161_4720401_+	type II toxin-antitoxin system CcdA family antitoxin	NA	NA	NA	NA	NA
4720310:4720325	attR	GCTGGAAAGCAGAAAA	NA	NA	NA	NA
WP_001199743.1|4720403_4720712_+	CcdB family protein	NA	NA	NA	NA	NA
WP_096322988.1|4721091_4722346_+|transposase	IS3 family transposase	transposase	Q6H9S3	Enterobacteria_phage	34.5	2.2e-18
