assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006337465.1_ASM633746v1	NZ_CP032902	Helicobacter pylori strain 280-A-EK1 chromosome, complete genome	1	438750-438835	1	CRISPRCasFinder	no	cas14j	DEDDh,cas14j,cas2,cas3	Unclear	GTTCTTGAACCACTACTTTTCGCATG	26	0	0	NA	NA	NA	1	1	TypeV	DEDDh,cas14j,cas2,cas3	NA|436aa|up_0|NZ_CP032902.1_436208_437516_-,NA|117aa|down_9|NZ_CP032902.1_448593_448944_-	NA|239aa|up_9|NZ_CP032902.1_427001_427718_+	PRK13460, PRK13460, F0F1 ATP synthase subunit B; Provisional	NA|659aa|up_8|NZ_CP032902.1_427787_429764_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|278aa|up_7|NZ_CP032902.1_429760_430594_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|441aa|up_6|NZ_CP032902.1_430659_431982_-	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|315aa|up_5|NZ_CP032902.1_432090_433035_-	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|408aa|up_4|NZ_CP032902.1_433047_434271_-	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|131aa|up_3|NZ_CP032902.1_434280_434673_-	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|187aa|up_2|NZ_CP032902.1_434688_435249_-	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|221aa|up_1|NZ_CP032902.1_435539_436202_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|436aa|up_0|NZ_CP032902.1_436208_437516_-	NA	NA|349aa|down_0|NZ_CP032902.1_439011_440058_-	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|337aa|down_1|NZ_CP032902.1_440218_441229_-	TIGR00749, Glucokinase_Glucose_kinase	NA|228aa|down_2|NZ_CP032902.1_441215_441899_-	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|426aa|down_3|NZ_CP032902.1_441909_443187_-	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|609aa|down_4|NZ_CP032902.1_443252_445079_+	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|207aa|down_5|NZ_CP032902.1_445089_445710_+	TIGR01182, KHG/KDPG_aldolase_	NA|291aa|down_6|NZ_CP032902.1_445784_446657_+	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|143aa|down_7|NZ_CP032902.1_446855_447284_-	pfam01797, Y1_Tnp, Transposase IS200 like	cas14j|428aa|down_8|NZ_CP032902.1_447353_448637_+	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|117aa|down_9|NZ_CP032902.1_448593_448944_-	NA
GCF_006337465.1_ASM633746v1	NZ_CP032902	Helicobacter pylori strain 280-A-EK1 chromosome, complete genome	2	567604-567692	2	CRISPRCasFinder	no		DEDDh,cas14j,cas2,cas3	Orphan	AAACGCAAGCGATAAATAACATT	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,cas2,cas3	NA,NA	NA|368aa|up_9|NZ_CP032902.1_552426_553530_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|546aa|up_8|NZ_CP032902.1_553538_555176_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|283aa|up_7|NZ_CP032902.1_555141_555990_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|600aa|up_6|NZ_CP032902.1_556035_557835_+	COG1217, TypA, Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]	NA|310aa|up_5|NZ_CP032902.1_557850_558780_+	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|208aa|up_4|NZ_CP032902.1_558781_559405_+	cd10436, GIY-YIG_EndoII_Hpy188I_like, Catalytic GIY-YIG domain of coliphage T4 non-specific endonuclease II, type II restriction endonuclease R	NA|161aa|up_3|NZ_CP032902.1_559507_559990_+	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|315aa|up_2|NZ_CP032902.1_560090_561035_-	COG0753, KatE, Catalase [Inorganic ion transport and metabolism]	NA|529aa|up_1|NZ_CP032902.1_561321_562908_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|482aa|up_0|NZ_CP032902.1_562932_564378_+	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|379aa|down_0|NZ_CP032902.1_568155_569292_-	pfam02254, TrkA_N, TrkA-N domain	NA|63aa|down_1|NZ_CP032902.1_569442_569631_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed	NA|281aa|down_2|NZ_CP032902.1_569729_570572_-	pfam05211, NLBH, Neuraminyllactose-binding hemagglutinin precursor (NLBH)	NA|354aa|down_3|NZ_CP032902.1_570696_571758_+	TIGR00445, mraY, phospho-N-acetylmuramoyl-pentapeptide-transferase	NA|423aa|down_4|NZ_CP032902.1_571758_573027_+	PRK03815, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional	NA|87aa|down_5|NZ_CP032902.1_573023_573284_-	pfam04359, DUF493, Protein of unknown function (DUF493)	NA|134aa|down_6|NZ_CP032902.1_573273_573675_-	TIGR00051, Acyl-CoA_thioesterase_YbgC, acyl-CoA thioester hydrolase, YbgC/YbaW family	NA|443aa|down_7|NZ_CP032902.1_573906_575235_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|443aa|down_8|NZ_CP032902.1_575245_576574_+	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|356aa|down_9|NZ_CP032902.1_576589_577657_+	COG2829, PldA, Outer membrane phospholipase A [Cell envelope biogenesis, outer membrane]
GCF_006337465.1_ASM633746v1	NZ_CP032902	Helicobacter pylori strain 280-A-EK1 chromosome, complete genome	3	601601-601748	3	CRISPRCasFinder	no		DEDDh,cas14j,cas2,cas3	Orphan	CCTTTGAAAAGGCATGATAAAGTTGATGATCTCAGTAAGGTAGGGC	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,cas2,cas3	NA|39aa|up_9|NZ_CP032902.1_588758_588875_+,NA|96aa|up_1|NZ_CP032902.1_598205_598493_+,NA|88aa|up_0|NZ_CP032902.1_598764_599028_+,NA|325aa|down_5|NZ_CP032902.1_606984_607959_+,NA|274aa|down_6|NZ_CP032902.1_607955_608777_+,NA|145aa|down_7|NZ_CP032902.1_608845_609280_-	NA|39aa|up_9|NZ_CP032902.1_588758_588875_+	NA	NA|482aa|up_8|NZ_CP032902.1_589182_590628_-	TIGR00653, Glutamine_synthetase, glutamine synthetase, type I	NA|151aa|up_7|NZ_CP032902.1_592898_593351_+	TIGR00158, 50S_ribosomal_protein_L9, ribosomal protein L9	NA|181aa|up_6|NZ_CP032902.1_593354_593897_+	PRK05456, PRK05456, ATP-dependent protease subunit HslV	NA|444aa|up_5|NZ_CP032902.1_593896_595228_+	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU	NA|303aa|up_4|NZ_CP032902.1_595224_596133_+	COG1159, Era, GTPase [General function prediction only]	NA|331aa|up_3|NZ_CP032902.1_596129_597122_+	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown]	NA|277aa|up_2|NZ_CP032902.1_597203_598034_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|96aa|up_1|NZ_CP032902.1_598205_598493_+	NA	NA|88aa|up_0|NZ_CP032902.1_598764_599028_+	NA	NA|256aa|down_0|NZ_CP032902.1_602798_603566_-	TIGR00067, Glutamate_racemase, glutamate racemase	NA|439aa|down_1|NZ_CP032902.1_603602_604919_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|68aa|down_2|NZ_CP032902.1_605184_605388_+	pfam01197, Ribosomal_L31, Ribosomal protein L31	NA|288aa|down_3|NZ_CP032902.1_605412_606276_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|228aa|down_4|NZ_CP032902.1_606288_606972_+	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|325aa|down_5|NZ_CP032902.1_606984_607959_+	NA	NA|274aa|down_6|NZ_CP032902.1_607955_608777_+	NA	NA|145aa|down_7|NZ_CP032902.1_608845_609280_-	NA	NA|313aa|down_8|NZ_CP032902.1_609754_610693_-	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	NA|413aa|down_9|NZ_CP032902.1_610715_611954_-	PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
GCF_006337465.1_ASM633746v1	NZ_CP032902	Helicobacter pylori strain 280-A-EK1 chromosome, complete genome	4	1465581-1465691	4	CRISPRCasFinder	no		DEDDh,cas14j,cas2,cas3	Orphan	TTTAGCTGGTGGGGTTGATGGAGCTGGTGT	30	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas14j,cas2,cas3	NA,NA|86aa|down_0|NZ_CP032902.1_1466256_1466514_-	NA|310aa|up_9|NZ_CP032902.1_1452156_1453086_+	TIGR00128, Malonyl_CoA-acyl_carrier_protein_transacylase, malonyl CoA-acyl carrier protein transacylase	NA|232aa|up_8|NZ_CP032902.1_1453096_1453792_+	PRK05584, PRK05584, 5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA|671aa|up_7|NZ_CP032902.1_1453986_1455999_+	PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated	NA|458aa|up_6|NZ_CP032902.1_1456018_1457392_+	pfam00877, NLPC_P60, NlpC/P60 family	NA|451aa|up_5|NZ_CP032902.1_1457445_1458798_+	PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional	NA|63aa|up_4|NZ_CP032902.1_1458804_1458993_+	pfam17402, DUF5408, Family of unknown function (DUF5408)	NA|142aa|up_3|NZ_CP032902.1_1459299_1459725_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|130aa|up_2|NZ_CP032902.1_1459721_1460111_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|674aa|up_1|NZ_CP032902.1_1460263_1462285_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|569aa|up_0|NZ_CP032902.1_1462487_1464194_-	PRK13914, PRK13914, invasion associated endopeptidase	NA|86aa|down_0|NZ_CP032902.1_1466256_1466514_-	NA	NA|353aa|down_1|NZ_CP032902.1_1466909_1467968_-	PRK00591, prfA, peptide chain release factor 1; Validated	NA|90aa|down_2|NZ_CP032902.1_1468092_1468362_-	PRK00239, rpsT, 30S ribosomal protein S20; Reviewed	NA|446aa|down_3|NZ_CP032902.1_1468451_1469789_+	PRK14324, glmM, phosphoglucosamine mutase; Provisional	NA|158aa|down_4|NZ_CP032902.1_1469782_1470256_+	PRK00376, lspA, lipoprotein signal peptidase	NA|239aa|down_5|NZ_CP032902.1_1470602_1471319_+	PRK13986, PRK13986, urease subunit beta	NA|570aa|down_6|NZ_CP032902.1_1471322_1473032_+	PRK13985, ureB, urease subunit alpha	NA|196aa|down_7|NZ_CP032902.1_1473223_1473811_+	cd13404, UreI_AmiS_like, UreI/AmiS family, proton-gated urea channel and putative amide transporters	NA|171aa|down_8|NZ_CP032902.1_1473812_1474325_+	PRK13261, ureE, urease accessory protein UreE; Provisional	NA|255aa|down_9|NZ_CP032902.1_1474337_1475102_+	COG0830, UreF, Urease accessory protein UreF [Posttranslational modification, protein turnover, chaperones]
