assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006337625.1_ASM633762v1	NZ_CP032904	Helicobacter pylori strain 169-A-EK5 chromosome, complete genome	1	558583-558706	1	CRISPRCasFinder	no		DEDDh,cas3,cas2,csx1	Orphan	CTGAAGAAATCATTTCAAAAAAACAAGAAGAATT	34	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas2,csx1	NA|113aa|up_0|NZ_CP032904.1_557851_558190_+,NA	NA|181aa|up_9|NZ_CP032904.1_551483_552026_+	TIGR03585, PseH, UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase	NA|313aa|up_8|NZ_CP032904.1_551958_552897_-	COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope biogenesis, outer membrane]	NA|261aa|up_7|NZ_CP032904.1_552893_553676_-	PRK13980, PRK13980, NAD synthetase; Provisional	NA|331aa|up_6|NZ_CP032904.1_553924_554917_+	PRK05479, PRK05479, ketol-acid reductoisomerase; Provisional	NA|269aa|up_5|NZ_CP032904.1_554940_555747_+	COG2894, MinD, Septum formation inhibitor-activating ATPase [Cell division and chromosome partitioning]	NA|78aa|up_4|NZ_CP032904.1_555743_555977_+	TIGR01215, Cell_division_topological_specificity_factor, cell division topological specificity factor MinE	NA|267aa|up_3|NZ_CP032904.1_555983_556784_+	TIGR00732, Protein_smf, DNA protecting protein DprA	NA|135aa|up_2|NZ_CP032904.1_556780_557185_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|117aa|up_1|NZ_CP032904.1_557314_557665_+	sd00010, SLR, Sel1-like repeat	NA|113aa|up_0|NZ_CP032904.1_557851_558190_+	NA	NA|125aa|down_0|NZ_CP032904.1_558790_559165_+	cd00735, T4-like_lys, bacteriophage T4-like lysozymes	NA|131aa|down_1|NZ_CP032904.1_559720_560113_+	COG3326, COG3326, Predicted membrane protein [Function unknown]	NA|299aa|down_2|NZ_CP032904.1_562040_562937_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|517aa|down_3|NZ_CP032904.1_562936_564487_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|539aa|down_4|NZ_CP032904.1_564495_566112_-	PRK05380, pyrG, CTP synthetase; Validated	NA|222aa|down_5|NZ_CP032904.1_566368_567034_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|568aa|down_6|NZ_CP032904.1_567077_568781_+	TIGR00206, Flagellar_M-ring_protein, flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF)	NA|344aa|down_7|NZ_CP032904.1_568798_569830_+	TIGR00207, Flagellar_motor_switch_protein_FliG, flagellar motor switch protein FliG	NA|260aa|down_8|NZ_CP032904.1_569816_570596_+	PRK06669, fliH, flagellar assembly protein H; Validated	NA|619aa|down_9|NZ_CP032904.1_570592_572449_+	TIGR00204, 1-deoxy-D-xylulose-5-phosphate_synthase, 1-deoxy-D-xylulose-5-phosphate synthase
GCF_006337625.1_ASM633762v1	NZ_CP032904	Helicobacter pylori strain 169-A-EK5 chromosome, complete genome	2	911632-911732	2	CRISPRCasFinder	no		DEDDh,cas3,cas2,csx1	Orphan	TTTTCTTTAATTTCTTTTTCTTT	23	1	2	911694-911709|911694-911709	NZ_CP032904.1_911724-911739|NZ_CP032904.1_28029-28014	NA	2	2	Orphan	DEDDh,cas3,cas2,csx1	NA|115aa|up_7|NZ_CP032904.1_903333_903678_+,NA|306aa|down_6|NZ_CP032904.1_920417_921335_-,NA|356aa|down_9|NZ_CP032904.1_923432_924500_-	NA|274aa|up_9|NZ_CP032904.1_901386_902208_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|309aa|up_8|NZ_CP032904.1_902386_903313_+	pfam01795, Methyltransf_5, MraW methylase family	NA|115aa|up_7|NZ_CP032904.1_903333_903678_+	NA	NA|301aa|up_6|NZ_CP032904.1_903876_904779_+	COG1912, COG1912, Uncharacterized conserved protein [Function unknown]	NA|655aa|up_5|NZ_CP032904.1_905049_907014_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|407aa|up_4|NZ_CP032904.1_907219_908440_+	COG4940, ComGF, Competence protein ComGF [Intracellular trafficking and secretion]	NA|67aa|up_3|NZ_CP032904.1_908945_909146_+	COG3177, COG3177, Fic family protein [Function unknown]	NA|415aa|up_2|NZ_CP032904.1_909157_910402_-	PRK05932, PRK05932, RNA polymerase factor sigma-54; Reviewed	NA|241aa|up_1|NZ_CP032904.1_910404_911127_-	COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only]	NA|134aa|up_0|NZ_CP032904.1_911139_911541_-	TIGR00150, Hypothetical_UPF0079_protein_yjeE	NA|211aa|down_0|NZ_CP032904.1_913405_914038_-	TIGR00948, Hypothetical_protein_Rv0488/MT0507/Mb0498	NA|141aa|down_1|NZ_CP032904.1_914297_914720_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|154aa|down_2|NZ_CP032904.1_914748_915210_+	pfam06518, DUF1104, Protein of unknown function (DUF1104)	NA|351aa|down_3|NZ_CP032904.1_915705_916758_-	TIGR00520, L-asparaginase_2, L-asparaginase, type II	NA|444aa|down_4|NZ_CP032904.1_916832_918164_+	TIGR00770, Anaerobic_C4-dicarboxylate_transporter_DcuA, anaerobic c4-dicarboxylate membrane transporter family protein	NA|628aa|down_5|NZ_CP032904.1_918239_920123_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|306aa|down_6|NZ_CP032904.1_920417_921335_-	NA	NA|329aa|down_7|NZ_CP032904.1_921304_922291_-	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]	NA|337aa|down_8|NZ_CP032904.1_922380_923391_-	pfam01171, ATP_bind_3, PP-loop family	NA|356aa|down_9|NZ_CP032904.1_923432_924500_-	NA
GCF_006337625.1_ASM633762v1	NZ_CP032904	Helicobacter pylori strain 169-A-EK5 chromosome, complete genome	3	1287318-1287403	3	CRISPRCasFinder	no		DEDDh,cas3,cas2,csx1	Orphan	CATGCGAGAAGTAGTGGTTCAAGAAC	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,cas3,cas2,csx1	NA|512aa|up_8|NZ_CP032904.1_1276943_1278479_+,NA|436aa|down_0|NZ_CP032904.1_1288643_1289951_+,NA|130aa|down_9|NZ_CP032904.1_1298655_1299045_-	NA|345aa|up_9|NZ_CP032904.1_1275094_1276129_-	TIGR01179, UDP-glucose_4-epimerase, UDP-glucose-4-epimerase GalE	NA|512aa|up_8|NZ_CP032904.1_1276943_1278479_+	NA	NA|254aa|up_7|NZ_CP032904.1_1278499_1279261_+	cd05346, SDR_c5, classical (c) SDR, subgroup 5	NA|291aa|up_6|NZ_CP032904.1_1279484_1280357_-	COG0790, COG0790, FOG: TPR repeat, SEL1 subfamily [General function prediction only]	NA|207aa|up_5|NZ_CP032904.1_1280431_1281052_-	TIGR01182, KHG/KDPG_aldolase_	NA|609aa|up_4|NZ_CP032904.1_1281070_1282897_-	TIGR01196, Phosphogluconate_dehydratase, 6-phosphogluconate dehydratase	NA|426aa|up_3|NZ_CP032904.1_1282962_1284240_+	COG0364, Zwf, Glucose-6-phosphate 1-dehydrogenase [Carbohydrate transport and metabolism]	NA|228aa|up_2|NZ_CP032904.1_1284250_1284934_+	TIGR01198, 6-phosphogluconolactonase_6PGL	NA|337aa|up_1|NZ_CP032904.1_1284920_1285931_+	TIGR00749, Glucokinase_Glucose_kinase	NA|349aa|up_0|NZ_CP032904.1_1286091_1287138_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|436aa|down_0|NZ_CP032904.1_1288643_1289951_+	NA	NA|221aa|down_1|NZ_CP032904.1_1289957_1290620_-	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|187aa|down_2|NZ_CP032904.1_1290899_1291460_+	PRK05844, PRK05844, pyruvate flavodoxin oxidoreductase subunit gamma; Validated	NA|131aa|down_3|NZ_CP032904.1_1291475_1291868_+	PRK09625, porD, pyruvate flavodoxin oxidoreductase subunit delta; Reviewed	NA|408aa|down_4|NZ_CP032904.1_1291877_1293101_+	PRK09622, porA, 2-oxoacid:ferredoxin oxidoreductase subunit alpha	NA|315aa|down_5|NZ_CP032904.1_1293113_1294058_+	cd03376, TPP_PFOR_porB_like, Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria	NA|441aa|down_6|NZ_CP032904.1_1294167_1295490_+	PRK08470, PRK08470, adenylosuccinate lyase; Provisional	NA|278aa|down_7|NZ_CP032904.1_1295554_1296388_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|659aa|down_8|NZ_CP032904.1_1296411_1298388_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|130aa|down_9|NZ_CP032904.1_1298655_1299045_-	NA
GCF_006337625.1_ASM633762v1	NZ_CP032904	Helicobacter pylori strain 169-A-EK5 chromosome, complete genome	4	1381018-1381278	1	CRT	no		DEDDh,cas3,cas2,csx1	Orphan	AGGTTTTTTAGCGTCTTTTTTNTCNTTNTGAGCCAC	36	0	0	NA	NA	NA	4	4	Orphan	DEDDh,cas3,cas2,csx1	NA,NA	NA|444aa|up_9|NZ_CP032904.1_1368519_1369851_+	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily	NA|254aa|up_8|NZ_CP032904.1_1369869_1370631_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|384aa|up_7|NZ_CP032904.1_1370640_1371792_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|460aa|up_6|NZ_CP032904.1_1371817_1373197_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|392aa|up_5|NZ_CP032904.1_1373363_1374539_-	PRK03545, PRK03545, putative arabinose transporter; Provisional	NA|248aa|up_4|NZ_CP032904.1_1374810_1375554_+	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism]	NA|374aa|up_3|NZ_CP032904.1_1375789_1376911_-	pfam05917, DUF874, Helicobacter pylori protein of unknown function (DUF874)	NA|347aa|up_2|NZ_CP032904.1_1377343_1378384_-	TIGR01296, Aspartate-semialdehyde_dehydrogenase, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)	NA|443aa|up_1|NZ_CP032904.1_1378370_1379699_-	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|350aa|up_0|NZ_CP032904.1_1379760_1380810_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|330aa|down_0|NZ_CP032904.1_1381573_1382563_+	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR)	NA|693aa|down_1|NZ_CP032904.1_1383121_1385200_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|156aa|down_2|NZ_CP032904.1_1385211_1385679_-	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|136aa|down_3|NZ_CP032904.1_1385694_1386102_-	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|2891aa|down_4|NZ_CP032904.1_1386190_1394863_-	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'	NA|126aa|down_5|NZ_CP032904.1_1395083_1395461_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|165aa|down_6|NZ_CP032904.1_1395505_1396000_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|235aa|down_7|NZ_CP032904.1_1396108_1396813_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|142aa|down_8|NZ_CP032904.1_1396857_1397283_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|177aa|down_9|NZ_CP032904.1_1397300_1397831_-	PRK05609, nusG, transcription antitermination protein NusG; Validated
