assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006338045.1_ASM633804v1	NZ_CP032908	Helicobacter pylori strain 23-A-EK1 chromosome, complete genome	1	757724-757874	1	CRISPRCasFinder	no		cas14k,DEDDh,cas3	Orphan	TTCCCTTTGAAAAGGCATGATAAAGTTGAAGATCTCAGTAAGGTAGGGC	49	0	0	NA	NA	NA	1	1	Orphan	cas14k,DEDDh,cas3	NA|307aa|up_9|NZ_CP032908.1_744860_745781_+,NA|238aa|up_8|NZ_CP032908.1_745862_746576_-,NA|382aa|up_7|NZ_CP032908.1_746572_747718_-,NA|371aa|up_6|NZ_CP032908.1_747728_748841_-,NA|143aa|up_5|NZ_CP032908.1_748857_749286_-,NA|269aa|up_4|NZ_CP032908.1_749340_750147_-,NA|76aa|up_0|NZ_CP032908.1_754224_754452_-,NA|322aa|down_5|NZ_CP032908.1_763071_764037_+,NA|274aa|down_6|NZ_CP032908.1_764033_764855_+,NA|146aa|down_7|NZ_CP032908.1_764927_765365_-	NA|307aa|up_9|NZ_CP032908.1_744860_745781_+	NA	NA|238aa|up_8|NZ_CP032908.1_745862_746576_-	NA	NA|382aa|up_7|NZ_CP032908.1_746572_747718_-	NA	NA|371aa|up_6|NZ_CP032908.1_747728_748841_-	NA	NA|143aa|up_5|NZ_CP032908.1_748857_749286_-	NA	NA|269aa|up_4|NZ_CP032908.1_749340_750147_-	NA	NA|984aa|up_3|NZ_CP032908.1_750148_753100_-	TIGR00929, CAG_pathogenicity_island_protein_23, type IV secretion/conjugal transfer ATPase, VirB4 family	NA|208aa|up_2|NZ_CP032908.1_753108_753732_-	pfam16567, CagD, Pathogenicity island component CagD	NA|116aa|up_1|NZ_CP032908.1_753733_754081_-	pfam16943, T4SS_CagC, Cag pathogenicity island, type IV secretory system	NA|76aa|up_0|NZ_CP032908.1_754224_754452_-	NA	NA|256aa|down_0|NZ_CP032908.1_758884_759652_-	TIGR00067, Glutamate_racemase, glutamate racemase	NA|439aa|down_1|NZ_CP032908.1_759690_761007_-	PRK09376, rho, transcription termination factor Rho; Provisional	NA|68aa|down_2|NZ_CP032908.1_761271_761475_+	pfam01197, Ribosomal_L31, Ribosomal protein L31	NA|288aa|down_3|NZ_CP032908.1_761499_762363_+	COG0313, COG0313, Predicted methyltransferases [General function prediction only]	NA|228aa|down_4|NZ_CP032908.1_762375_763059_+	TIGR00186, Uncharacterized_tRNA/rRNA_methyltransferase_MG252, rRNA methylase, putative, group 3	NA|322aa|down_5|NZ_CP032908.1_763071_764037_+	NA	NA|274aa|down_6|NZ_CP032908.1_764033_764855_+	NA	NA|146aa|down_7|NZ_CP032908.1_764927_765365_-	NA	NA|313aa|down_8|NZ_CP032908.1_765838_766777_-	TIGR00513, accA, acetyl-CoA carboxylase, carboxyl transferase, alpha subunit	NA|413aa|down_9|NZ_CP032908.1_766799_768038_-	PRK08439, PRK08439, 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
GCF_006338045.1_ASM633804v1	NZ_CP032908	Helicobacter pylori strain 23-A-EK1 chromosome, complete genome	2	1160332-1160455	2	CRISPRCasFinder	no		cas14k,DEDDh,cas3	Orphan	TGAACAGAAAATCTCTGAACAGAAA	25	1	1	1160411-1160430	NZ_CP032908.1_1160456-1160475	NA	2	2	Orphan	cas14k,DEDDh,cas3	NA|57aa|up_8|NZ_CP032908.1_1148208_1148379_-,NA|43aa|up_3|NZ_CP032908.1_1154321_1154450_-,NA|208aa|down_1|NZ_CP032908.1_1162395_1163019_+	NA|87aa|up_9|NZ_CP032908.1_1147763_1148024_-	pfam15738, YafQ_toxin, Bacterial toxin of type II toxin-antitoxin system, YafQ	NA|57aa|up_8|NZ_CP032908.1_1148208_1148379_-	NA	NA|735aa|up_7|NZ_CP032908.1_1148760_1150965_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|371aa|up_6|NZ_CP032908.1_1152117_1153230_-	TIGR00075, Hydrogenase_isoenzymes_formation_protein_HypD, hydrogenase expression/formation protein HypD	NA|79aa|up_5|NZ_CP032908.1_1153244_1153481_-	COG0298, HypC, Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]	NA|243aa|up_4|NZ_CP032908.1_1153480_1154209_-	TIGR00073, nickel_incorporation_protein_HypB, hydrogenase accessory protein HypB	NA|43aa|up_3|NZ_CP032908.1_1154321_1154450_-	NA	NA|100aa|up_2|NZ_CP032908.1_1154460_1154760_-	cd02230, cupin_HP0902-like, Helicobacter pylori HP0902 and related proteins, cupin domain	NA|402aa|up_1|NZ_CP032908.1_1154857_1156063_-	PRK00180, PRK00180, acetate kinase A/propionate kinase 2; Reviewed	NA|525aa|up_0|NZ_CP032908.1_1157885_1159460_+	pfam02120, Flg_hook, Flagellar hook-length control protein FliK	NA|606aa|down_0|NZ_CP032908.1_1160526_1162344_+	PRK05841, flgE, flagellar hook protein FlgE; Validated	NA|208aa|down_1|NZ_CP032908.1_1162395_1163019_+	NA	NA|380aa|down_2|NZ_CP032908.1_1163011_1164151_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|down_3|NZ_CP032908.1_1164154_1166182_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|517aa|down_4|NZ_CP032908.1_1166767_1168318_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|534aa|down_5|NZ_CP032908.1_1168339_1169941_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|down_6|NZ_CP032908.1_1170800_1172345_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|811aa|down_7|NZ_CP032908.1_1172590_1175023_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|144aa|down_8|NZ_CP032908.1_1175199_1175631_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|1086aa|down_9|NZ_CP032908.1_1175635_1178893_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit
GCF_006338045.1_ASM633804v1	NZ_CP032908	Helicobacter pylori strain 23-A-EK1 chromosome, complete genome	3	1181684-1181881	3,1	CRISPRCasFinder,CRT	no		cas14k,DEDDh,cas3	Orphan	TTCAATCAAGGGACTTATCACTTTAAT,TTCAATCAAGGGACTTATAA	27,20	0	0	NA	NA	I-B:I-B	3,3	3	Orphan	cas14k,DEDDh,cas3	NA,NA|220aa|down_8|NZ_CP032908.1_1194973_1195633_+	NA|380aa|up_9|NZ_CP032908.1_1163011_1164151_+	COG0827, COG0827, Adenine-specific DNA methylase [DNA replication, recombination, and repair]	NA|676aa|up_8|NZ_CP032908.1_1164154_1166182_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|517aa|up_7|NZ_CP032908.1_1166767_1168318_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|534aa|up_6|NZ_CP032908.1_1168339_1169941_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|515aa|up_5|NZ_CP032908.1_1170800_1172345_-	pfam02521, HP_OMP_2, Putative outer membrane protein	NA|811aa|up_4|NZ_CP032908.1_1172590_1175023_-	TIGR01786, hemoglobin-haptoglobin-binding_protein, TonB-dependent hemoglobin/transferrin/lactoferrin receptor family protein	NA|144aa|up_3|NZ_CP032908.1_1175199_1175631_-	COG0009, SUA5, Putative translation factor (SUA5) [Translation, ribosomal structure and biogenesis]	NA|1086aa|up_2|NZ_CP032908.1_1175635_1178893_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|231aa|up_1|NZ_CP032908.1_1178990_1179683_-	cd10432, BI-1-like_bacterial, Bacterial BAX inhibitor (BI)-1/YccA-like proteins	NA|332aa|up_0|NZ_CP032908.1_1179827_1180823_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|370aa|down_0|NZ_CP032908.1_1188516_1189626_+	pfam01856, HP_OMP, Helicobacter outer membrane protein	NA|69aa|down_1|NZ_CP032908.1_1189695_1189902_-	TIGR00013, Probable_tautomerase_K2, 4-oxalocrotonate tautomerase family enzyme	NA|194aa|down_2|NZ_CP032908.1_1190064_1190646_+	TIGR00615, Recombination_protein_RecR, recombination protein RecR	NA|382aa|down_3|NZ_CP032908.1_1190642_1191788_+	TIGR00094, tRNA_pseudouridine_synthase_D, tRNA pseudouridine synthase, TruD family	NA|327aa|down_4|NZ_CP032908.1_1191726_1192707_+	PRK02870, PRK02870, heat shock protein HtpX; Provisional	NA|181aa|down_5|NZ_CP032908.1_1192707_1193250_+	TIGR00063, GTP_cyclohydrolase_1, GTP cyclohydrolase I	NA|304aa|down_6|NZ_CP032908.1_1193265_1194177_+	COG0142, IspA, Geranylgeranyl pyrophosphate synthase [Coenzyme metabolism]	NA|268aa|down_7|NZ_CP032908.1_1194173_1194977_+	COG0496, SurE, Predicted acid phosphatase [General function prediction only]	NA|220aa|down_8|NZ_CP032908.1_1194973_1195633_+	NA	NA|201aa|down_9|NZ_CP032908.1_1195634_1196237_+	COG0720, COG0720, 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
GCF_006338045.1_ASM633804v1	NZ_CP032908	Helicobacter pylori strain 23-A-EK1 chromosome, complete genome	4	1431034-1431120	4	CRISPRCasFinder	no		cas14k,DEDDh,cas3	Orphan	TTGTTTTTCTTGTTCTAGTTCTAT	24	1	1	1431058-1431096	NZ_CP032908.1_289184-289222	NA	1	1	Orphan	cas14k,DEDDh,cas3	NA,NA|73aa|down_3|NZ_CP032908.1_1435574_1435793_-	NA|642aa|up_9|NZ_CP032908.1_1417284_1419210_-	pfam18304, SabA_adhesion, SabA N-terminal extracellular adhesion domain	NA|234aa|up_8|NZ_CP032908.1_1419668_1420370_-	TIGR00107, Purine_nucleoside_phosphorylase_DeoD-type, purine-nucleoside phosphorylase, family 1 (deoD)	NA|414aa|up_7|NZ_CP032908.1_1420366_1421608_-	PRK05362, PRK05362, phosphopentomutase; Provisional	NA|419aa|up_6|NZ_CP032908.1_1421619_1422876_-	COG1972, NupC, Nucleoside permease [Nucleotide transport and metabolism]	NA|444aa|up_5|NZ_CP032908.1_1423183_1424515_+	cd17472, MFS_YajR_like, Escherichia coli inner membrane transport protein YajR and similar multidrug-efflux transporters of the Major Facilitator Superfamily	NA|254aa|up_4|NZ_CP032908.1_1424534_1425296_+	PRK10696, PRK10696, tRNA 2-thiocytidine biosynthesis protein TtcA; Provisional	NA|384aa|up_3|NZ_CP032908.1_1425304_1426456_-	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|460aa|up_2|NZ_CP032908.1_1426481_1427861_-	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|392aa|up_1|NZ_CP032908.1_1428026_1429202_-	PRK03545, PRK03545, putative arabinose transporter; Provisional	NA|248aa|up_0|NZ_CP032908.1_1429477_1430221_+	COG3338, Cah, Carbonic anhydrase [Inorganic ion transport and metabolism]	NA|347aa|down_0|NZ_CP032908.1_1431909_1432950_-	TIGR01296, Aspartate-semialdehyde_dehydrogenase, aspartate-semialdehyde dehydrogenase (peptidoglycan organisms)	NA|443aa|down_1|NZ_CP032908.1_1432936_1434265_-	COG0124, HisS, Histidyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]	NA|350aa|down_2|NZ_CP032908.1_1434326_1435376_+	COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane]	NA|73aa|down_3|NZ_CP032908.1_1435574_1435793_-	NA	NA|330aa|down_4|NZ_CP032908.1_1436017_1437007_+	cd19078, AKR_AKR13C1_2, AKR13C family of aldo-keto reductase (AKR)	NA|693aa|down_5|NZ_CP032908.1_1437521_1439600_-	PRK00007, PRK00007, elongation factor G; Reviewed	NA|156aa|down_6|NZ_CP032908.1_1439611_1440079_-	PRK05302, PRK05302, 30S ribosomal protein S7; Validated	NA|136aa|down_7|NZ_CP032908.1_1440094_1440502_-	PRK05163, rpsL, 30S ribosomal protein S12; Validated	NA|2891aa|down_8|NZ_CP032908.1_1440590_1449263_-	PRK09603, PRK09603, DNA-directed RNA polymerase subunit beta/beta'	NA|126aa|down_9|NZ_CP032908.1_1449484_1449862_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed
