The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP032911	Helicobacter pylori strain 19-A-EK3 chromosome, complete genome	1706376	553528	606905	1706376	terminase,tRNA,holin,portal,protease,transposase	Helicobacter_phage(87.5%)	42	NA	NA
WP_139543921.1|553528_554509_-|protease	zinc metalloprotease HtpX	protease	NA	NA	NA	NA
WP_139543922.1|554447_555593_-|tRNA	tRNA pseudouridine(13) synthase TruD	tRNA	NA	NA	NA	NA
WP_001099598.1|555589_556171_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_001115881.1|556317_556524_+	4-oxalocrotonate tautomerase family protein	NA	NA	NA	NA	NA
WP_139548788.1|556586_557690_-	Hop family outer membrane protein HopJ/HopK	NA	NA	NA	NA	NA
WP_139544631.1|557741_565196_-	toxin	NA	NA	NA	NA	NA
WP_139543924.1|565275_566271_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_139543925.1|566415_567108_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_139543926.1|567206_570464_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA	NA
WP_139543927.1|570468_570900_+	Sua5/YciO/YrdC/YwlC family protein	NA	NA	NA	NA	NA
WP_139543928.1|571079_573515_+	TonB-dependent receptor	NA	NA	NA	NA	NA
WP_139548789.1|573761_575306_+	outer membrane beta-barrel protein HofG	NA	NA	NA	NA	NA
WP_139543929.1|576102_577698_-	Hop family adhesin AlpB	NA	NA	NA	NA	NA
WP_139548790.1|577719_579273_-	Hop family adhesin AlpA	NA	NA	NA	NA	NA
WP_139543931.1|580107_582135_-	UvrD-helicase domain-containing protein	NA	A7KV33	Bacillus_phage	27.8	2.3e-54
WP_139543932.1|582138_583278_-	N-6 DNA methylase	NA	A0A1V0SF64	Hokovirus	31.9	6.9e-48
WP_139548791.1|583299_583881_-	restriction endonuclease	NA	R4THR6	Phaeocystis_globosa_virus	34.9	2.9e-26
WP_139543934.1|583932_585750_-	flagellar hook-basal body complex protein	NA	NA	NA	NA	NA
WP_139543935.1|585746_586742_-	flagellar hook assembly protein FlgD	NA	NA	NA	NA	NA
WP_139548792.1|586792_588301_-	flagellar hook-length control protein FliK	NA	NA	NA	NA	NA
WP_139543937.1|588438_589449_+	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_000063685.1|590715_591183_+|transposase	IS200/IS605 family transposase	transposase	G9CU69	Helicobacter_phage	99.4	7.9e-83
WP_139543879.1|591151_592300_+|transposase	transposase	transposase	G9CU70	Helicobacter_phage	99.0	3.9e-216
WP_139548793.1|592384_592780_+	DUF1353 domain-containing protein	NA	A0A1S5REZ3	Helicobacter_phage	91.6	1.8e-64
WP_139543938.1|592779_593181_+	hypothetical protein	NA	A0A1S5RFA7	Helicobacter_phage	85.7	4.7e-60
WP_139543939.1|593177_593765_+	hypothetical protein	NA	I7HHP2	Helicobacter_phage	90.3	2.0e-91
WP_139543940.1|593990_594539_+	Coiled-coil domain-containing protein	NA	A0A1S5RFN1	Helicobacter_phage	91.5	2.6e-85
WP_139543941.1|595709_596066_+	hypothetical protein	NA	A0A1S5RG28	Helicobacter_phage	83.1	2.2e-48
WP_139543942.1|596103_596511_+	hypothetical protein	NA	A0A1S5RFS1	Helicobacter_phage	96.3	1.0e-65
WP_139543943.1|596580_598386_+|portal	portal protein	portal	A0A1S5RFE9	Helicobacter_phage	93.2	3.3e-312
WP_139543944.1|598500_600057_+	hypothetical protein	NA	A0A1S5RFE3	Helicobacter_phage	96.1	4.1e-293
WP_139543945.1|600122_600326_+	hypothetical protein	NA	A0A1S5RFP0	Helicobacter_phage	95.5	3.8e-26
WP_139543946.1|600336_600573_+	hypothetical protein	NA	A0A1S5RF02	Helicobacter_phage	76.9	1.2e-23
WP_139543947.1|600572_600902_+|holin	holin	holin	A0A1S5RF07	Helicobacter_phage	87.2	3.5e-45
WP_139543948.1|600903_601899_+	hypothetical protein	NA	A0A1S5RF11	Helicobacter_phage	80.4	2.4e-137
WP_139543949.1|601895_602135_+	hypothetical protein	NA	A0A1S5RFZ3	Helicobacter_phage	88.4	1.0e-25
WP_139543950.1|602168_602714_+	hypothetical protein	NA	A0A1S5RF47	Helicobacter_phage	96.1	2.3e-97
WP_139548794.1|602717_603536_+	hypothetical protein	NA	A0A1S5RHD1	Helicobacter_phage	92.3	4.9e-128
WP_139543952.1|603537_604098_+	hypothetical protein	NA	A0A1S5RG18	Helicobacter_phage	71.0	3.8e-47
WP_139543953.1|604097_604424_+	hypothetical protein	NA	A0A1S5RHF0	Helicobacter_phage	85.2	7.3e-43
WP_139543954.1|605374_606154_+	Coiled-coil domain-containing protein	NA	A0A1S5RFL1	Helicobacter_phage	82.6	4.3e-118
WP_139543955.1|606140_606905_+|terminase	terminase	terminase	A0A1S5RFI2	Helicobacter_phage	86.2	1.5e-110
>prophage 2
NZ_CP032911	Helicobacter pylori strain 19-A-EK3 chromosome, complete genome	1706376	706466	714737	1706376	tRNA	Synechococcus_phage(33.33%)	7	NA	NA
WP_001047005.1|706466_706988_-	inorganic diphosphatase	NA	A0A1B1ISK6	uncultured_Mediterranean_phage	46.4	3.3e-37
WP_139548854.1|707039_708323_-	lipopolysaccharide biosynthesis protein	NA	A0A1D8KNF8	Synechococcus_phage	26.0	1.8e-07
WP_139548799.1|708363_709362_-	glycosyltransferase family 25 protein	NA	A0A1D8KNF8	Synechococcus_phage	26.3	3.3e-09
WP_139544017.1|709387_709963_-	adenylate kinase	NA	NA	NA	NA	NA
WP_139544018.1|709979_711713_-|tRNA	aspartate--tRNA ligase	tRNA	A0A1V0SIS0	Klosneuvirus	22.6	9.0e-15
WP_139544019.1|711747_712689_-	response regulator	NA	Q56AR1	Bacillus_thuringiensis_phage	28.4	4.1e-22
WP_139544020.1|712766_714737_+	DNA ligase (NAD(+)) LigA	NA	A0A0K2QQN8	Ralstonia_phage	33.1	1.7e-94
>prophage 3
NZ_CP032911	Helicobacter pylori strain 19-A-EK3 chromosome, complete genome	1706376	1276702	1343598	1706376	transposase,tRNA,integrase,protease	Helicobacter_phage(33.33%)	54	1275183:1275203	1339540:1339560
1275183:1275203	attL	TTTCTAAAAAAGAGCTAGAAA	NA	NA	NA	NA
WP_139544374.1|1276702_1278052_+|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_139544375.1|1278055_1279789_+|tRNA	proline--tRNA ligase	tRNA	NA	NA	NA	NA
WP_139544376.1|1279799_1280720_+	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_139544377.1|1280719_1281091_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_139544378.1|1281184_1282252_+	Sel1-like repeat protein HcpE	NA	NA	NA	NA	NA
WP_139544379.1|1282970_1283501_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001197146.1|1283500_1284673_-	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	31.2	3.8e-33
WP_078242255.1|1284696_1285347_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000603207.1|1285362_1286160_-	protein disulfide-isomerase DsbK	NA	NA	NA	NA	NA
WP_139544380.1|1286274_1287006_+	3-deoxy-manno-octulosonate cytidylyltransferase	NA	NA	NA	NA	NA
WP_139544382.1|1288898_1290071_-	SulP family inorganic anion transporter	NA	A0A2H4J153	uncultured_Caudovirales_phage	42.2	1.9e-69
WP_139548856.1|1290314_1292390_+	Hop family outer membrane protein HopM/HopN	NA	NA	NA	NA	NA
WP_120998622.1|1292602_1293436_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_139544384.1|1293811_1294891_-	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_139544385.1|1295014_1296385_-	DNA repair protein RadA	NA	NA	NA	NA	NA
WP_000415833.1|1296472_1296706_-	CopG family transcriptional regulator	NA	NA	NA	NA	NA
WP_139544386.1|1296861_1297842_-	iron-sulfur cluster assembly scaffold protein NifU	NA	A0A1B1IT19	uncultured_Mediterranean_phage	37.0	6.7e-15
WP_033744554.1|1297863_1299027_-	cysteine desulfurase, NifS family	NA	H7BUW1	unidentified_phage	42.3	2.1e-39
WP_139544387.1|1299197_1299659_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_139544388.1|1299804_1300356_+	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA	NA
WP_139544389.1|1300537_1301638_-	1-deoxy-D-xylulose-5-phosphate reductoisomerase	NA	NA	NA	NA	NA
WP_139548828.1|1301638_1302439_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_139544391.1|1302451_1304110_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_139544392.1|1304205_1306071_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_139544393.1|1306081_1307233_+	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA	NA
WP_139544394.1|1307689_1308442_+	Sel1-like repeat protein HcpA	NA	NA	NA	NA	NA
WP_139544395.1|1308636_1310502_-	molecular chaperone HtpG	NA	A0A1V0SAD6	Catovirus	33.8	3.1e-93
WP_139544654.1|1310605_1311958_-	outer membrane beta-barrel protein HofA	NA	NA	NA	NA	NA
WP_139544396.1|1312161_1313361_+	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_139544397.1|1313374_1314613_-	P-loop NTPase	NA	NA	NA	NA	NA
WP_139544398.1|1314577_1317424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139544655.1|1318563_1320369_+	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_139544399.1|1321453_1322521_+|integrase	tyrosine-type recombinase/integrase	integrase	S5W9T9	Leptospira_phage	25.9	2.1e-06
WP_139544400.1|1322833_1323631_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_120823133.1|1323602_1323854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139544402.1|1324383_1324773_-|protease	CAAX protease	protease	NA	NA	NA	NA
WP_120861553.1|1324970_1325306_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001877677.1|1325337_1325967_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139544403.1|1325971_1327249_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139544404.1|1328502_1329936_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139544406.1|1331948_1333001_-	DUF1738 domain-containing protein	NA	NA	NA	NA	NA
WP_139544407.1|1333802_1334471_+	AAA family ATPase	NA	A0A222YXS3	Escherichia_phage	33.5	1.2e-23
WP_000365707.1|1334517_1334895_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000063685.1|1335079_1335547_+|transposase	IS200/IS605 family transposase	transposase	G9CU69	Helicobacter_phage	99.4	7.9e-83
WP_139543879.1|1335515_1336664_+|transposase	transposase	transposase	G9CU70	Helicobacter_phage	99.0	3.9e-216
WP_139544408.1|1336750_1337377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139544409.1|1337450_1338254_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_000965788.1|1338223_1338694_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139544410.1|1338748_1340809_-	type IA DNA topoisomerase	NA	A0A1V0SB35	Catovirus	28.7	1.3e-57
1339540:1339560	attR	TTTCTAGCTCTTTTTTAGAAA	NA	NA	NA	NA
WP_108593827.1|1340948_1341200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139544411.1|1341336_1341561_-	hypothetical protein	NA	NA	NA	NA	NA
WP_108593828.1|1341553_1341751_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139543879.1|1342013_1343162_-|transposase	transposase	transposase	G9CU70	Helicobacter_phage	99.0	3.9e-216
WP_000063685.1|1343130_1343598_-|transposase	IS200/IS605 family transposase	transposase	G9CU69	Helicobacter_phage	99.4	7.9e-83
