assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006351785.1_ASM635178v1	NZ_CP040907	Enterococcus faecium strain FB-1 chromosome, complete genome	1	1833291-1833400	1	CRISPRCasFinder	no		DEDDh,csa3,cas2,DinG,cas3,RT,cas14j	Orphan	CTTTGCTCAACCAGTATTATTCATCA	26	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,cas2,DinG,cas3,RT,cas14j	NA,NA	NA|720aa|up_9|NZ_CP040907.1_1821878_1824038_+	PRK07306, PRK07306, ribonucleotide-diphosphate reductase subunit alpha; Validated	NA|322aa|up_8|NZ_CP040907.1_1824087_1825053_+	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit	NA|380aa|up_7|NZ_CP040907.1_1825141_1826281_-	COG0628, yhhT, Predicted permease, member of the PurR regulon [General function prediction only]	NA|238aa|up_6|NZ_CP040907.1_1826589_1827303_-	COG1285, SapB, Uncharacterized membrane protein [Function unknown]	NA|234aa|up_5|NZ_CP040907.1_1827556_1828258_-	cd01399, GlcN6P_deaminase, GlcN6P_deaminase: Glucosamine-6-phosphate (GlcN6P) deaminase subfamily; GlcN6P deaminase catalyzes the reversible conversion of GlcN6P to D-fructose-6-phosphate (Fru6P) and ammonium	NA|511aa|up_4|NZ_CP040907.1_1828491_1830024_+	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]	NA|401aa|up_3|NZ_CP040907.1_1830214_1831417_-	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily	NA|230aa|up_2|NZ_CP040907.1_1831498_1832188_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|123aa|up_1|NZ_CP040907.1_1832293_1832662_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|168aa|up_0|NZ_CP040907.1_1832714_1833218_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|230aa|down_0|NZ_CP040907.1_1833627_1834317_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|141aa|down_1|NZ_CP040907.1_1834420_1834843_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|223aa|down_2|NZ_CP040907.1_1835185_1835854_+	COG1760, SdaA, L-serine deaminase [Amino acid transport and metabolism]	NA|291aa|down_3|NZ_CP040907.1_1835866_1836739_+	TIGR00718, Probable_L-serine_dehydratase_alpha_chain, L-serine dehydratase, iron-sulfur-dependent, alpha subunit	NA|340aa|down_4|NZ_CP040907.1_1836829_1837849_-	cd04737, LOX_like_FMN, L-Lactate oxidase (LOX) FMN-binding domain	NA|296aa|down_5|NZ_CP040907.1_1838021_1838909_-	pfam06028, DUF915, Alpha/beta hydrolase of unknown function (DUF915)	NA|182aa|down_6|NZ_CP040907.1_1838985_1839531_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|57aa|down_7|NZ_CP040907.1_1839631_1839802_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|51aa|down_8|NZ_CP040907.1_1839825_1839978_-	PRK00504, rpmG, 50S ribosomal protein L33; Validated	NA|215aa|down_9|NZ_CP040907.1_1840139_1840784_+	cd02205, CBS_pair_SF, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains superfamily
GCF_006351785.1_ASM635178v1	NZ_CP040907	Enterococcus faecium strain FB-1 chromosome, complete genome	2	2038663-2038890	1	CRT	no	cas3	DEDDh,csa3,cas2,DinG,cas3,RT,cas14j	Unclear	TGTTGTTGATTCTTCNGT	18	0	0	NA	NA	NA	4	4	Unclear	DEDDh,csa3,cas2,DinG,cas3,RT,cas14j	NA,NA	NA|90aa|up_9|NZ_CP040907.1_2024843_2025113_-	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|532aa|up_8|NZ_CP040907.1_2025123_2026719_-	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	cas3|1174aa|up_7|NZ_CP040907.1_2026733_2030255_-	COG1197, Mfd, Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]	NA|187aa|up_6|NZ_CP040907.1_2030271_2030832_-	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase	NA|325aa|up_5|NZ_CP040907.1_2031184_2032159_+	PRK00066, ldh, L-lactate dehydrogenase; Reviewed	NA|467aa|up_4|NZ_CP040907.1_2032328_2033729_+	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD	NA|318aa|up_3|NZ_CP040907.1_2033805_2034759_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|241aa|up_2|NZ_CP040907.1_2034873_2035596_-	PRK00110, PRK00110, YebC/PmpR family DNA-binding transcriptional regulator	NA|169aa|up_1|NZ_CP040907.1_2035674_2036181_-	pfam04892, VanZ, VanZ like family	NA|600aa|up_0|NZ_CP040907.1_2036303_2038103_+	cd09607, M3B_PepF, Peptidase family M3B, oligopeptidase F (PepF)	NA|170aa|down_0|NZ_CP040907.1_2040002_2040512_-	pfam04093, MreD, rod shape-determining protein MreD	NA|285aa|down_1|NZ_CP040907.1_2040515_2041370_-	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional	NA|213aa|down_2|NZ_CP040907.1_2041524_2042163_-	cd07995, TPK, Thiamine pyrophosphokinase	NA|217aa|down_3|NZ_CP040907.1_2042163_2042814_-	PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated	NA|300aa|down_4|NZ_CP040907.1_2042826_2043726_-	PRK00098, PRK00098, GTPase RsgA; Reviewed	NA|690aa|down_5|NZ_CP040907.1_2043890_2045960_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|247aa|down_6|NZ_CP040907.1_2045956_2046697_-	COG0631, PTC1, Serine/threonine protein phosphatase [Signal transduction mechanisms]	NA|453aa|down_7|NZ_CP040907.1_2046709_2048068_-	PRK14902, PRK14902, 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA|313aa|down_8|NZ_CP040907.1_2048067_2049006_-	PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed	NA|164aa|down_9|NZ_CP040907.1_2048998_2049490_-	PRK00150, def, peptide deformylase; Reviewed
GCF_006351785.1_ASM635178v1	NZ_CP040906	Enterococcus faecium strain FB-1 plasmid punnamed, complete sequence	1	51689-51817	1	CRISPRCasFinder	no	cas14j	cas14j	Unclear	GGTATGATTTTCATACCCTCTTGA	24	0	0	NA	NA	NA	2	2	TypeV	DEDDh,csa3,cas2,DinG,cas3,RT,cas14j	NA|87aa|up_8|NZ_CP040906.1_42759_43020_-,NA|254aa|up_7|NZ_CP040906.1_43032_43794_-,NA|80aa|up_3|NZ_CP040906.1_48362_48602_-,NA|80aa|up_2|NZ_CP040906.1_48667_48907_-,NA|111aa|up_0|NZ_CP040906.1_50033_50366_-,NA	NA|697aa|up_9|NZ_CP040906.1_40672_42763_-	pfam17998, AgI_II_C2, Cell surface antigen I/II C2 terminal domain	NA|87aa|up_8|NZ_CP040906.1_42759_43020_-	NA	NA|254aa|up_7|NZ_CP040906.1_43032_43794_-	NA	NA|251aa|up_6|NZ_CP040906.1_43809_44562_-	cd05827, Sortase_C, Sortase domain found in class C sortases	NA|659aa|up_5|NZ_CP040906.1_44576_46553_-	pfam16569, GramPos_pilinBB, Gram-positive pilin backbone subunit 2, Cna-B-like domain	NA|224aa|up_4|NZ_CP040906.1_46605_47277_-	cd06165, Sortase_A, Sortase domain found in class A sortases	NA|80aa|up_3|NZ_CP040906.1_48362_48602_-	NA	NA|80aa|up_2|NZ_CP040906.1_48667_48907_-	NA	NA|61aa|up_1|NZ_CP040906.1_49073_49256_-	pfam17400, DUF5406, Family of unknown function (DUF5406)	NA|111aa|up_0|NZ_CP040906.1_50033_50366_-	NA	NA|488aa|down_0|NZ_CP040906.1_53375_54839_-	pfam13751, DDE_Tnp_1_6, Transposase DDE domain	NA|325aa|down_1|NZ_CP040906.1_55046_56021_+	COG2222, AgaS, Predicted phosphosugar isomerases [Cell envelope biogenesis, outer membrane]	NA|154aa|down_2|NZ_CP040906.1_56002_56464_+	cd00006, PTS_IIA_man, PTS_IIA, PTS system, mannose/sorbose specific IIA subunit	NA|155aa|down_3|NZ_CP040906.1_56513_56978_+	pfam03830, PTSIIB_sorb, PTS system sorbose subfamily IIB component	NA|250aa|down_4|NZ_CP040906.1_56991_57741_+	pfam03609, EII-Sor, PTS system sorbose-specific iic component	NA|277aa|down_5|NZ_CP040906.1_57740_58571_+	pfam03613, EIID-AGA, PTS system mannose/fructose/sorbose family IID component	NA|216aa|down_6|NZ_CP040906.1_58570_59218_+	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only]	NA|259aa|down_7|NZ_CP040906.1_59315_60092_-	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|393aa|down_8|NZ_CP040906.1_60433_61612_-	pfam00872, Transposase_mut, Transposase, Mutator family	NA|218aa|down_9|NZ_CP040906.1_61729_62383_+	cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein
