The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040904	Enterococcus faecium strain N56454 chromosome, complete genome	2495617	779562	836022	2495617	transposase,tRNA	Streptococcus_phage(23.08%)	54	NA	NA
WP_002287522.1|779562_779967_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287525.1|779983_781132_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002322632.1|781494_783279_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.4	4.6e-46
WP_099124493.1|783209_783446_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322633.1|783736_784588_+	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_010723002.1|784684_786571_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002346424.1|786611_787514_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_077149111.1|787582_787804_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305593.1|787743_789147_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_002322636.1|789146_790580_+	6-phospho-beta-glucosidase	NA	NA	NA	NA	NA
WP_002291688.1|790724_791651_+	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	52.8	2.3e-89
WP_010724850.1|791864_793592_+	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	62.9	5.3e-209
WP_002291691.1|793664_793958_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002291694.1|794052_794913_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_002287322.1|795004_795433_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_002287321.1|795594_795771_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_002291695.1|795797_796244_+	GatB/YqeY domain-containing protein	NA	A0A292GL36	Xanthomonas_phage	38.8	1.6e-19
WP_139896813.1|796399_797779_-	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA	NA
WP_002291698.1|798484_799456_+	PhoH family protein	NA	W8D063	Erwinia_phage	49.8	3.5e-48
WP_002326293.1|799479_801672_+	HDIG domain-containing protein	NA	NA	NA	NA	NA
WP_002288749.1|801688_802165_+	rRNA maturation RNase YbeY	NA	NA	NA	NA	NA
WP_002296159.1|802142_802544_+	diacylglycerol kinase family protein	NA	NA	NA	NA	NA
WP_002326292.1|802558_803458_+	GTPase Era	NA	NA	NA	NA	NA
WP_002301248.1|803600_804413_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_002305598.1|804796_805714_+|tRNA	glycine--tRNA ligase subunit alpha	tRNA	NA	NA	NA	NA
WP_139896814.1|805715_807791_+|tRNA	glycine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_010721761.1|807958_808912_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_139896815.1|809051_809960_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_139896816.1|810295_811075_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294932.1|811120_812065_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002323178.1|812080_812860_+	tyrosine protein kinase	NA	NA	NA	NA	NA
WP_002323177.1|812871_813570_+	CpsD/CapB family tyrosine-protein kinase	NA	A0A1X9I5D6	Streptococcus_phage	37.6	2.7e-26
WP_139896817.1|813597_814362_+	tyrosine protein phosphatase	NA	NA	NA	NA	NA
WP_139896818.1|815114_816566_+	exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA	NA	NA	NA	NA
WP_139896819.1|816583_817045_+	UDP-N-acetylglucosamine--LPS N-acetylglucosamine transferase	NA	NA	NA	NA	NA
WP_139896820.1|817060_817561_+	multidrug MFS transporter	NA	NA	NA	NA	NA
WP_139896821.1|817796_818888_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_139896822.1|818891_819854_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139896823.1|819872_821300_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
WP_139896824.1|821303_822425_+	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA	NA
WP_139896825.1|822435_823137_+	CatB-related O-acetyltransferase	NA	A0A1V0SJ47	Klosneuvirus	32.7	2.8e-15
WP_139896826.1|823138_824755_+	cytidyltransferase	NA	NA	NA	NA	NA
WP_139896827.1|824771_825815_+	acetylneuraminic acid synthetase	NA	A0A1B1IVE2	uncultured_Mediterranean_phage	32.4	7.6e-25
WP_139896828.1|825828_827118_+	DUF4910 domain-containing protein	NA	NA	NA	NA	NA
WP_139896829.1|827118_827910_+	AAC(3) family N-acetyltransferase	NA	NA	NA	NA	NA
WP_139896830.1|827933_829445_+	amino acid adenylation domain-containing protein	NA	A0A2K9L3I8	Tupanvirus	29.0	4.9e-49
WP_139896831.1|829449_829677_+	acyl carrier protein	NA	NA	NA	NA	NA
WP_139896879.1|830390_830573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139896832.1|830705_831074_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139896833.1|831095_831194_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139896834.1|831368_832328_-|transposase	IS30-like element IS6770 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.4	3.6e-37
WP_139896835.1|832590_832827_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139896836.1|833525_833717_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096638097.1|834881_836022_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.7	2.2e-78
>prophage 2
NZ_CP040904	Enterococcus faecium strain N56454 chromosome, complete genome	2495617	877809	925119	2495617	tRNA,transposase,protease,integrase	Bacillus_phage(30.0%)	54	866565:866580	903784:903799
866565:866580	attL	AATTTTCAATCGAAGG	NA	NA	NA	NA
WP_104876562.1|877809_878058_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	58.7	2.6e-08
WP_086956687.1|878180_879343_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_002322761.1|880230_880548_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289810.1|880750_881116_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305696.1|881323_881806_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002323154.1|882002_882893_+	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_139896845.1|883218_885693_+	HAD-IC family P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	29.3	1.3e-46
WP_002322835.1|885795_887532_-	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	9.3e-28
WP_002293705.1|887528_888233_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002297194.1|888363_888867_+	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293708.1|888826_889165_+	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_002293709.1|889185_890604_+	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002293710.1|890715_891294_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_002297192.1|891297_891819_+	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293714.1|891897_892452_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002290274.1|892704_892980_+	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002290277.1|892991_893243_+	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002297190.1|893367_894159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293716.1|894328_894850_+	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002293717.1|894839_895601_+|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002286913.1|895736_896084_+	50S ribosomal protein L19	NA	NA	NA	NA	NA
WP_002311684.1|896119_896305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139896846.1|896341_896635_+	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002288972.1|896722_896836_-|protease	CAAX amino protease	protease	NA	NA	NA	NA
WP_139896847.1|897434_898607_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	89.2	9.8e-122
WP_139896881.1|898807_901135_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_002303962.1|901131_901590_+	cell wall anchor	NA	NA	NA	NA	NA
WP_002303960.1|901620_902634_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA	NA
WP_002288981.1|903245_904061_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
903784:903799	attR	AATTTTCAATCGAAGG	NA	NA	NA	NA
WP_139896848.1|904266_905439_+	class C sortase	NA	NA	NA	NA	NA
WP_002293154.1|905435_905633_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010721943.1|905600_906095_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288984.1|906684_907107_+	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002322902.1|907272_908466_-	MFS transporter	NA	NA	NA	NA	NA
WP_139896849.1|908694_909873_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002302962.1|910035_910413_+	MerR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002321036.1|910400_910739_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288989.1|910872_911316_+	LysR family transcriptional regulator substrate-binding protein	NA	NA	NA	NA	NA
WP_139896850.1|911577_912393_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002297646.1|912402_913065_+	DUF624 domain-containing protein	NA	NA	NA	NA	NA
WP_002297645.1|913270_914935_+	acetolactate synthase AlsS	NA	NA	NA	NA	NA
WP_002323008.1|914947_915658_+	acetolactate decarboxylase	NA	NA	NA	NA	NA
WP_002289618.1|915787_916285_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_139896851.1|916470_916731_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321266.1|917092_917332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323892.1|917617_917932_+	hypothetical protein	NA	NA	NA	NA	NA
WP_077149121.1|918145_918328_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288592.1|918902_919676_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002288595.1|919819_920170_+	SdpI family protein	NA	NA	NA	NA	NA
WP_002293942.1|920150_920867_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
WP_002322837.1|920866_922315_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
WP_002288586.1|922384_922894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322838.1|922883_923609_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000122610.1|923826_925119_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	38.9	3.2e-57
>prophage 3
NZ_CP040904	Enterococcus faecium strain N56454 chromosome, complete genome	2495617	1117952	1176850	2495617	transposase,protease,tRNA	Lactococcus_phage(23.08%)	58	NA	NA
WP_002319139.1|1117952_1118654_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_002288338.1|1118650_1119772_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA	NA
WP_002288340.1|1119786_1121019_+	peptidase T	NA	NA	NA	NA	NA
WP_002319141.1|1121150_1122059_+	YegS/Rv2252/BmrU family lipid kinase	NA	NA	NA	NA	NA
WP_002288344.1|1122093_1122366_+	DUF1294 domain-containing protein	NA	NA	NA	NA	NA
WP_002319142.1|1122376_1123423_+	flippase-like domain-containing protein	NA	NA	NA	NA	NA
WP_002319145.1|1125005_1125425_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002325739.1|1125438_1126011_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002325738.1|1126026_1126242_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002319149.1|1126556_1129166_+	ATP-dependent chaperone ClpB	NA	A0A2I7SAX5	Vibrio_phage	35.1	2.5e-133
WP_002319150.1|1129312_1129984_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139896859.1|1129976_1130471_-	nucleoside 2-deoxyribosyltransferase	NA	A0A1W6JK28	Lactococcus_phage	55.3	7.9e-41
WP_002319152.1|1130490_1131711_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002319153.1|1131857_1133693_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.4	4.4e-20
WP_002343557.1|1134281_1134566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002324358.1|1134622_1135576_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002326201.1|1136069_1136372_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287941.1|1137068_1138247_+|transposase	IS256-like element ISEfm2 family transposase	transposase	NA	NA	NA	NA
WP_002298666.1|1138392_1138608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293041.1|1138870_1139068_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.5	3.9e-23
WP_002298664.1|1139459_1140053_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002299276.1|1140296_1140710_-	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	31.5	2.1e-07
WP_002296761.1|1141166_1141421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289418.1|1141789_1142005_-	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_002333578.1|1142227_1143028_+	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	2.0e-09
WP_139896860.1|1144037_1144238_+	regulator	NA	NA	NA	NA	NA
WP_139896861.1|1144290_1144713_+	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_139896862.1|1144705_1145197_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_002319296.1|1145184_1145739_+	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002326991.1|1145756_1146752_+	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
WP_002319298.1|1146769_1147168_+	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_139896882.1|1147151_1147847_+	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	4.0e-22
WP_002299262.1|1148412_1149300_-	rotamase	NA	NA	NA	NA	NA
WP_002296628.1|1149484_1150324_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_000997695.1|1150426_1151605_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002299261.1|1151787_1151988_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298694.1|1153303_1153810_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002295743.1|1156127_1157036_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002298690.1|1158146_1158353_-	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_002298689.1|1158998_1159847_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002325733.1|1159983_1160886_+	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D7RFJ0	Synechococcus_phage	32.1	3.6e-47
WP_002325732.1|1160887_1161889_+	4-phosphoerythronate dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	28.6	2.3e-23
WP_002298686.1|1161897_1162665_+	HAD family phosphatase	NA	NA	NA	NA	NA
WP_002293303.1|1163404_1163605_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	77.3	3.9e-23
WP_002296662.1|1164798_1165164_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298680.1|1165239_1165485_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002296667.1|1166940_1167438_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002298676.1|1167477_1168287_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002298675.1|1168620_1169478_+	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	27.1	1.0e-19
WP_002298674.1|1169470_1170373_+	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_002298673.1|1170404_1170755_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002318987.1|1170788_1171727_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002298671.1|1171804_1172698_+	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	45.7	2.6e-58
WP_002296677.1|1172735_1173299_+	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002291274.1|1173311_1173500_+	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_002298670.1|1173512_1174415_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_104884989.1|1174446_1174689_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_100970418.1|1175708_1176850_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.7	2.2e-78
>prophage 4
NZ_CP040904	Enterococcus faecium strain N56454 chromosome, complete genome	2495617	1193654	1253575	2495617	transposase,integrase	Enterococcus_phage(22.22%)	55	1228563:1228579	1252954:1252970
WP_000997695.1|1193654_1194833_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_139896863.1|1194956_1196996_+	penicillin-binding transpeptidase domain-containing protein	NA	NA	NA	NA	NA
WP_002295931.1|1197104_1198256_-	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_049143562.1|1198409_1198940_-	membrane protein	NA	NA	NA	NA	NA
WP_002288180.1|1199038_1199389_-	DUF2200 domain-containing protein	NA	NA	NA	NA	NA
WP_002288179.1|1199545_1201075_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.0	3.9e-38
WP_002288178.1|1201084_1201648_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_002288176.1|1201791_1202454_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002324065.1|1202637_1204284_+	mannitol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_139896864.1|1204274_1205357_+	mannonate dehydratase	NA	NA	NA	NA	NA
WP_049143561.1|1205464_1207018_-	M protein trans-acting positive regulator	NA	NA	NA	NA	NA
WP_002333562.1|1208441_1209395_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_050558076.1|1209502_1210582_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_002324072.1|1210690_1211131_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002288163.1|1211187_1211598_-	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_002301993.1|1211777_1212212_-	VOC family protein	NA	NA	NA	NA	NA
WP_002303243.1|1212310_1213159_-	YitT family protein	NA	NA	NA	NA	NA
WP_002324073.1|1213547_1215314_+	alpha-glycosidase	NA	NA	NA	NA	NA
WP_002301997.1|1215415_1216675_+	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002318365.1|1216821_1218123_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002288156.1|1218125_1218977_+	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002295923.1|1218989_1219805_+	maltodextrose utilization protein MalA	NA	NA	NA	NA	NA
WP_002324076.1|1219955_1221122_+	class I SAM-dependent methyltransferase	NA	A0A2K9L4K8	Tupanvirus	39.3	1.6e-47
WP_002298449.1|1221351_1221999_+	lipoprotein	NA	NA	NA	NA	NA
WP_002295918.1|1222082_1223027_+	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	44.4	5.2e-65
WP_002295917.1|1223161_1224613_+	amidase	NA	NA	NA	NA	NA
WP_002333560.1|1224633_1225470_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_139896865.1|1225469_1226129_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002298443.1|1226254_1226944_+	hypothetical protein	NA	U5PU21	Bacillus_phage	33.2	1.1e-19
WP_002295913.1|1226949_1227906_+	sce7725 family protein	NA	NA	NA	NA	NA
WP_002337005.1|1227949_1228462_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
1228563:1228579	attL	ACAAGAAAGAATTTCCG	NA	NA	NA	NA
WP_086309599.1|1228717_1229266_-	AAA family ATPase	NA	S4W1R9	Pandoravirus	29.5	4.3e-11
WP_002302011.1|1229354_1230536_-	pyrimidine nucleoside transporter NupC	NA	NA	NA	NA	NA
WP_139896866.1|1230770_1232279_-	DUF1846 family protein	NA	NA	NA	NA	NA
WP_002295907.1|1232437_1232629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302013.1|1232831_1233749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295905.1|1233741_1234815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295904.1|1234962_1235481_+	membrane protein	NA	NA	NA	NA	NA
WP_002302017.1|1235461_1235854_+	DUF4430 domain-containing protein	NA	NA	NA	NA	NA
WP_002295900.1|1235929_1236865_+	cation diffusion facilitator family transporter	NA	NA	NA	NA	NA
WP_002295898.1|1236997_1237777_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_139896867.1|1237769_1238087_+	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_002302018.1|1238330_1239941_+	polysaccharide biosynthesis protein	NA	NA	NA	NA	NA
WP_002298432.1|1240097_1240946_+	DegV family protein	NA	A0A0N9SI50	Staphylococcus_phage	37.4	9.8e-15
WP_002286073.1|1241176_1241656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139896868.1|1241688_1243917_+	AAA domain-containing protein	NA	R4T8G7	Halovirus	23.0	4.9e-05
WP_002302020.1|1244045_1245689_+	alpha-glucosidase	NA	NA	NA	NA	NA
WP_002302021.1|1245761_1246307_-	TIGR01440 family protein	NA	NA	NA	NA	NA
WP_002286069.1|1246329_1246815_-	ECF transporter S component	NA	NA	NA	NA	NA
WP_002286068.1|1246804_1247617_-	hydroxymethylpyrimidine/phosphomethylpyrimidine kinase	NA	NA	NA	NA	NA
WP_002333557.1|1247797_1249288_-	acyl-CoA synthetase	NA	NA	NA	NA	NA
WP_002302025.1|1249396_1250428_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_002324522.1|1250691_1251600_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002287525.1|1252005_1253154_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
1252954:1252970	attR	CGGAAATTCTTTCTTGT	NA	NA	NA	NA
WP_002287522.1|1253170_1253575_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
>prophage 5
NZ_CP040904	Enterococcus faecium strain N56454 chromosome, complete genome	2495617	1454712	1463775	2495617		Synechococcus_phage(16.67%)	9	NA	NA
WP_002331832.1|1454712_1455291_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.8	1.0e-26
WP_002321731.1|1455287_1456331_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002309482.1|1456362_1457802_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002338225.1|1457786_1460009_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.4	1.1e-150
WP_002288017.1|1460009_1460681_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002338224.1|1460682_1460937_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288021.1|1460936_1461665_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002338223.1|1461920_1462298_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002306865.1|1462479_1463775_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	1.0e-18
>prophage 6
NZ_CP040904	Enterococcus faecium strain N56454 chromosome, complete genome	2495617	1827620	1836216	2495617		Streptococcus_phage(66.67%)	9	NA	NA
WP_002288083.1|1827620_1829810_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
WP_002288081.1|1830248_1830851_+	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002343486.1|1830904_1832026_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002318291.1|1832134_1833007_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002288076.1|1833075_1833423_-	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002324566.1|1833415_1834240_-	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288071.1|1834275_1835214_-	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002292340.1|1835227_1835557_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294039.1|1835571_1836216_-	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
>prophage 7
NZ_CP040904	Enterococcus faecium strain N56454 chromosome, complete genome	2495617	1954171	2001480	2495617	transposase,tRNA,bacteriocin	Planktothrix_phage(23.08%)	42	NA	NA
WP_002323245.1|1954171_1955344_-|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_010725141.1|1955589_1956543_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002294013.1|1956786_1958502_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.3	1.7e-50
WP_010718046.1|1958504_1960268_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	30.2	4.2e-44
WP_002289509.1|1960307_1960844_-	folate family ECF transporter S component	NA	NA	NA	NA	NA
WP_002291069.1|1961166_1961589_-	methylglyoxal synthase	NA	NA	NA	NA	NA
WP_002338684.1|1961797_1962907_+	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	Q6GZ03	Mycoplasma_phage	33.0	4.6e-20
WP_002294011.1|1963028_1963658_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294004.1|1964108_1964993_-	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA	NA	NA	NA	NA	NA
WP_002305490.1|1964985_1965555_-	ribonuclease M5	NA	NA	NA	NA	NA
WP_002324188.1|1965547_1966324_-	TatD family hydrolase	NA	NA	NA	NA	NA
WP_002319648.1|1966478_1967801_-	amino acid permease	NA	NA	NA	NA	NA
WP_002325419.1|1967975_1968563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289325.1|1969046_1971056_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	38.3	1.4e-96
WP_002289337.1|1971323_1971602_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293995.1|1971698_1972520_+	NUDIX hydrolase	NA	G3MA14	Bacillus_virus	32.8	2.7e-25
WP_072538526.1|1972512_1972701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002307244.1|1972804_1973815_-	helix-turn-helix domain-containing protein	NA	A0A288TXV8	Enterococcus_phage	40.8	6.1e-56
WP_002289330.1|1973826_1974780_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.2	3.0e-20
WP_002289332.1|1974769_1975840_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.0	1.5e-20
WP_002338680.1|1975845_1976889_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002293573.1|1976889_1977831_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002293992.1|1977914_1978262_+	DUF3899 domain-containing protein	NA	NA	NA	NA	NA
WP_002338679.1|1978331_1979996_-	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_080129772.1|1980058_1980280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293989.1|1980542_1981091_-	aminoglycoside N-acetyltransferase AAC(6')-Ii	NA	NA	NA	NA	NA
WP_002338678.1|1981644_1982748_+	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002307236.1|1982744_1982951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293986.1|1982940_1984008_-	23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN	NA	NA	NA	NA	NA
WP_002338677.1|1984237_1986685_-	DNA translocase FtsK	NA	A0A218M9A2	Mycobacterium_phage	50.7	8.1e-86
WP_002338676.1|1986873_1988310_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	29.2	3.9e-48
WP_010718044.1|1988995_1989811_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_002299692.1|1989828_1990464_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.4	1.1e-26
WP_002289240.1|1990482_1991124_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002289239.1|1991603_1992089_+|tRNA	prolyl-tRNA synthetase associated domain-containing protein	tRNA	NA	NA	NA	NA
WP_002292716.1|1992510_1993830_+|transposase	IS1380 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	94.1	2.0e-240
WP_101735415.1|1994042_1995203_-	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
WP_077150440.1|1995602_1997204_-	Cna B-type domain-containing protein	NA	NA	NA	NA	NA
WP_000997695.1|1997441_1998620_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002289237.1|1998842_1999142_-|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_002300136.1|1999492_2000125_+	pentapeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_000997695.1|2000301_2001480_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
>prophage 8
NZ_CP040904	Enterococcus faecium strain N56454 chromosome, complete genome	2495617	2070200	2095824	2495617	transposase,protease	uncultured_virus(18.18%)	22	NA	NA
WP_113813871.1|2070200_2071379_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002290607.1|2071788_2073414_-	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	56.8	4.9e-156
WP_002288862.1|2073464_2073749_-	co-chaperone GroES	NA	A0A221S4M3	uncultured_virus	40.2	2.0e-12
WP_002338655.1|2073973_2074636_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002340257.1|2074711_2076004_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002288856.1|2076173_2076803_+	NAD(P)H-binding protein	NA	NA	NA	NA	NA
WP_002288854.1|2076905_2077715_-	MBL fold metallo-hydrolase	NA	A0A0C5AJ83	Bacteriophage	33.6	3.1e-34
WP_002288853.1|2077769_2078639_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002318504.1|2078639_2079956_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002294131.1|2079952_2081788_-	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	37.7	5.2e-37
WP_002288850.1|2081792_2082497_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	41.6	5.8e-45
WP_002294132.1|2082686_2083547_-	DegV family protein	NA	A0A1X9I5J4	Streptococcus_phage	24.4	4.6e-12
WP_002322652.1|2083533_2084103_-	DUF1836 domain-containing protein	NA	NA	NA	NA	NA
WP_002299784.1|2084856_2085159_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002323245.1|2085403_2086576_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002295271.1|2087029_2088004_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002295273.1|2088166_2088424_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002293041.1|2089288_2089486_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	78.5	3.9e-23
WP_010721810.1|2090726_2091746_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	65.5	7.8e-59
WP_002323245.1|2092015_2093188_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_000997695.1|2093345_2094524_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002324630.1|2094633_2095824_-|transposase	IS256-like element ISLgar5 family transposase	transposase	NA	NA	NA	NA
>prophage 1
NZ_CP040905	Enterococcus faecium strain N56454 plasmid unnamed, complete sequence	198480	1755	133915	198480	integrase,transposase	Streptococcus_phage(53.23%)	117	NA	NA
WP_002324484.1|1755_3660_+	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	35.3	1.7e-99
WP_000202380.1|3939_5259_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_010706271.1|5457_6207_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002326551.1|6199_7117_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.2	4.6e-42
WP_000395511.1|7299_7914_-	helix-turn-helix transcriptional regulator	NA	A0A139ZPI6	Marinitoga_camini_virus	46.8	5.5e-07
WP_000384569.1|7903_8101_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002331379.1|8266_8626_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	40.4	4.4e-17
WP_002287522.1|9323_9728_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287525.1|9744_10893_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002326554.1|11229_12207_+	toll/interleukin-1 receptor domain-containing protein	NA	NA	NA	NA	NA
WP_002326555.1|12387_13221_+	GIY-YIG nuclease family protein	NA	NA	NA	NA	NA
WP_002326556.1|13226_13817_+|integrase	site-specific integrase	integrase	D2XR58	Bacillus_phage	33.1	8.3e-21
WP_113836384.1|14290_15313_-|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002295193.1|15400_16060_+	GTP cyclohydrolase I FolE	NA	A0A1W7AF02	Streptococcus_virus	55.9	1.6e-52
WP_139896883.1|16073_16910_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_104885288.1|17047_18259_+|transposase	IS256 family transposase	transposase	NA	NA	NA	NA
WP_002326565.1|19346_20207_-	aldose 1-epimerase	NA	NA	NA	NA	NA
WP_002323589.1|20351_21500_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.7	9.0e-205
WP_002287522.1|21516_21921_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_025478704.1|22058_22412_+	hypothetical protein	NA	NA	NA	NA	NA
WP_086310365.1|22533_23775_+	serine/threonine transporter SstT	NA	NA	NA	NA	NA
WP_104870375.1|24519_25479_+|transposase	IS30-like element IS1062 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.0	1.8e-33
WP_002326135.1|25619_27206_+	bifunctional aspartate transaminase/aspartate 4-decarboxylase	NA	A0A1X6WGT4	Pacmanvirus	24.1	2.0e-05
WP_002326134.1|27219_28881_+	aspartate-alanine antiporter	NA	NA	NA	NA	NA
WP_002326133.1|29051_30011_+|transposase	IS30-like element IS1062 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.0	1.1e-33
WP_002292291.1|30152_30557_+	organic hydroperoxide resistance protein	NA	NA	NA	NA	NA
WP_002336905.1|30689_31733_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294754.1|31747_32311_+	restriction endonuclease subunit S	NA	NA	NA	NA	NA
WP_010721601.1|33634_34975_-|transposase	ISL3 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	44.1	1.3e-98
WP_010721600.1|35125_36151_-	EmtA family 23S rRNA (guanine(2470)) methyltransferase	NA	NA	NA	NA	NA
WP_098188887.1|37278_38187_+|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_002334007.1|38273_39128_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_098188888.1|39224_41474_+	alpha-galactosidase	NA	NA	NA	NA	NA
WP_113836382.1|41476_42649_+	MFS transporter	NA	NA	NA	NA	NA
WP_113836390.1|42972_44135_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.9	7.8e-79
WP_139896884.1|46571_46724_+	conjugal transfer protein	NA	NA	NA	NA	NA
WP_139896911.1|46745_47951_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX3	Streptococcus_phage	97.5	5.5e-229
WP_001009056.1|47993_48215_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	100.0	4.3e-31
WP_000342539.1|48330_48828_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	100.0	1.7e-91
WP_000769868.1|49999_51001_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	100.0	5.0e-191
WP_001224320.1|50997_51933_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	99.0	7.7e-170
WP_012386611.1|52207_52294_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_104670782.1|52309_54229_+	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	93.3	0.0e+00
WP_001574277.1|54427_55804_+	tetracycline efflux MFS transporter Tet(L)	NA	NA	NA	NA	NA
WP_002348611.1|55852_56053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_096541189.1|56875_57553_-|transposase	IS3 family transposase	transposase	U5P429	Shigella_phage	28.2	2.1e-07
WP_000633907.1|57983_58184_+	DUF3173 family protein	NA	NA	NA	NA	NA
WP_000237797.1|58210_59404_+|integrase	site-specific integrase	integrase	H0UST3	Bacillus_phage	35.6	2.2e-44
WP_003587210.1|59940_60408_+	DNA starvation/stationary phase protection protein	NA	NA	NA	NA	NA
WP_139896885.1|60696_62616_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	99.8	0.0e+00
WP_011058339.1|62631_62718_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_002328814.1|63751_64927_+|transposase	IS256-like element IS1310 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	29.2	2.4e-27
WP_002328820.1|65073_65781_+	protein rep	NA	A0A286QS97	Streptococcus_phage	62.0	4.4e-08
WP_011058338.1|67678_67864_+	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	67.9	3.9e-17
WP_001227347.1|67923_68277_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	100.0	1.3e-58
WP_013670292.1|68481_68553_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000804885.1|68781_69204_+	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	100.0	2.5e-72
WP_002343713.1|69200_69383_+	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	100.0	3.7e-28
WP_077699430.1|69552_69690_-	conjugal transfer protein	NA	NA	NA	NA	NA
WP_002324545.1|69811_69952_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139896886.1|70048_71650_+	site-specific resolvase TndX	NA	A0A0K2CNN5	Brevibacillus_phage	24.9	5.6e-27
WP_139896887.1|72342_73251_-|transposase	IS982 family transposase	transposase	NA	NA	NA	NA
WP_002301108.1|73747_74302_+|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.1	8.6e-36
WP_002325668.1|74399_75353_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	4.8e-34
WP_002301591.1|76403_77489_-	tyrosine recombinase XerS	NA	NA	NA	NA	NA
WP_002295345.1|78878_79388_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002324522.1|79623_80532_+|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_031645850.1|81146_81827_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	97.3	3.2e-125
WP_002380754.1|82601_82841_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_010714231.1|83084_83198_-	hypothetical protein	NA	E4ZFP9	Streptococcus_phage	88.2	3.4e-08
WP_001038790.1|83202_83940_-	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	1.4e-134
WP_001814874.1|84064_84148_-	23S rRNA methyltransferase attenuation leader peptide	NA	NA	NA	NA	NA
WP_002301399.1|84520_85480_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.5	5.0e-31
WP_001096887.1|85754_86549_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_104833013.1|87051_88214_-|transposase	IS3-like element ISSag12 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.0	1.1e-80
WP_044116541.1|88287_88494_-	hypothetical protein	NA	A0A1B0RXL7	Streptococcus_phage	100.0	4.8e-24
WP_139896888.1|88490_89399_-	aminoglycoside 6-adenylyltransferase	NA	E4ZFP8	Streptococcus_phage	99.7	8.2e-177
WP_000662263.1|89431_90166_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_071661597.1|90146_91016_-	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	92.0	1.2e-153
WP_000205227.1|91030_91255_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002328889.1|91754_92834_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.5	1.6e-38
WP_078098981.1|92857_92974_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139896889.1|93282_94086_-	lincosamide nucleotidyltransferase Lnu(B)	NA	NA	NA	NA	NA
WP_002294513.1|94139_95624_-	ABC-F type ribosomal protection protein Lsa(E)	NA	A0A2H4UUX5	Bodo_saltans_virus	26.0	2.6e-26
WP_139896890.1|96712_97171_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294510.1|97221_97473_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139896891.1|97690_98473_-	aminoglycoside nucleotidyltransferase ANT(9)	NA	NA	NA	NA	NA
WP_002301399.1|98492_99452_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.5	5.0e-31
WP_104833013.1|99885_101047_+|transposase	IS3-like element ISSag12 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	54.0	1.1e-80
WP_139896892.1|102009_103149_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	D9J0Y9	Brochothrix_phage	73.9	1.0e-163
WP_139896893.1|103348_104203_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_139896894.1|104199_104787_-	abortive phage infection protein	NA	NA	NA	NA	NA
WP_139896895.1|104982_105225_+	addiction module antitoxin	NA	NA	NA	NA	NA
WP_139896896.1|105460_106906_-	family 1 glycosylhydrolase	NA	A0A0B5JD41	Pandoravirus	24.0	4.4e-23
WP_139896897.1|106925_108770_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_048718398.1|108774_109617_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_139896898.1|109908_110748_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_139896899.1|111306_111510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139896900.1|111527_111749_+	DUF2922 family protein	NA	NA	NA	NA	NA
WP_139896901.1|111782_112468_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	3.5e-127
WP_139896902.1|112831_114445_-	tetronasin resistance protein	NA	NA	NA	NA	NA
WP_002326773.1|115659_116256_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002311824.1|117526_117823_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000868795.1|119852_120350_-	trimethoprim-resistant dihydrofolate reductase DfrG	NA	G3MBI7	Bacillus_virus	49.1	4.0e-40
WP_002326830.1|120646_120964_-	hypothetical protein	NA	A0A1W6JN36	Lactococcus_phage	79.4	3.5e-26
WP_002332783.1|121403_122267_-	toxin zeta	NA	NA	NA	NA	NA
WP_002326825.1|122268_122541_-	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	96.7	5.4e-07
WP_001835296.1|122557_122773_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	4.2e-31
WP_002326827.1|122864_123761_-	ParA family protein	NA	A0A1X9I765	Streptococcus_phage	97.9	1.1e-152
WP_139896903.1|123991_125200_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	35.1	1.8e-46
WP_031645850.1|125771_126452_+|transposase	IS6 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	97.3	3.2e-125
WP_139896904.1|127248_128421_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	99.2	5.0e-134
WP_002324522.1|128547_129456_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002326151.1|129845_131150_+	MFS transporter	NA	NA	NA	NA	NA
WP_002326152.1|131184_132162_+	choloylglycine hydrolase family protein	NA	M1H001	Paramecium_bursaria_Chlorella_virus	28.8	4.4e-27
WP_002287522.1|132345_132750_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287525.1|132766_133915_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
>prophage 2
NZ_CP040905	Enterococcus faecium strain N56454 plasmid unnamed, complete sequence	198480	137835	186144	198480	integrase,holin,transposase	Bacillus_phage(33.33%)	44	149117:149132	194490:194505
WP_002295624.1|137835_137958_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_002305043.1|139158_140661_-	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002305041.1|141524_142343_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_139896905.1|142832_143216_+|transposase	IS200/IS605 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.6	4.0e-48
WP_002305039.1|144534_145131_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_139896906.1|147590_149051_-	toprim domain-containing protein	NA	NA	NA	NA	NA
149117:149132	attL	CGCGTTCTTTTTGTGA	NA	NA	NA	NA
WP_139896907.1|149320_149509_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295674.1|149622_149964_-	DUF5406 domain-containing protein	NA	F0PIH7	Enterococcus_phage	62.5	1.5e-35
WP_002323647.1|150582_150915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002323245.1|151738_152911_+|transposase	IS256-like element IS1542 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	88.8	1.3e-121
WP_002326172.1|153070_154111_-	replication protein RepA	NA	NA	NA	NA	NA
WP_002348857.1|155462_155657_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287525.1|156363_157512_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002287522.1|157528_157933_-|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002323399.1|158291_158546_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002290394.1|158546_158864_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002295743.1|159497_160406_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_086310190.1|160518_160791_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_002292678.1|160865_161195_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_002292680.1|161757_162615_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
WP_002292681.1|162615_163164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_096638097.1|163490_164632_-|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.7	2.2e-78
WP_002295679.1|164812_165541_+	peptidase	NA	A0A1B0T6A2	Bacillus_phage	26.1	3.1e-09
WP_002326175.1|165570_166698_+	S8 family serine peptidase	NA	A0A217EQY2	Bacillus_phage	33.5	1.1e-13
WP_139896912.1|169224_170220_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002333909.1|170224_170851_+	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase	NA	NA	NA	NA	NA
WP_002333908.1|171243_172251_-	LacI family transcriptional regulator	NA	NA	NA	NA	NA
WP_002333907.1|172737_174144_+	6-phospho-beta-galactosidase	NA	A0A0B5JD41	Pandoravirus	30.7	6.8e-45
WP_002333906.1|174164_174488_+	PTS lactose IIa component	NA	NA	NA	NA	NA
WP_002333905.1|174498_176181_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_139896908.1|176372_178346_+	cellulase family glycosylhydrolase	NA	NA	NA	NA	NA
WP_139896909.1|178360_178702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_010780438.1|178706_179240_+	signal peptidase I	NA	NA	NA	NA	NA
WP_139896910.1|179236_179893_+	signal peptide protein	NA	NA	NA	NA	NA
WP_107408512.1|179934_180201_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123874663.1|180814_181216_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002333897.1|181281_181503_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_123874664.1|182119_182272_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_123874665.1|182293_182512_-	hypothetical protein	NA	NA	NA	NA	NA
WP_123874666.1|182691_182841_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_010780445.1|182830_183139_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123874891.1|183227_184421_+|integrase	site-specific integrase	integrase	A0A0M5M609	Bacillus_phage	25.3	1.5e-13
WP_002290286.1|184777_185071_+	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002343723.1|185184_186144_+|transposase	IS30 family transposase	transposase	H7BUM7	unidentified_phage	27.2	9.7e-19
194490:194505	attR	TCACAAAAAGAACGCG	NA	NA	NA	NA
