assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	1	647622-647761	1	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTGTATCGTTGTAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCA	49	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|336aa|up_9|NZ_CP040067.1_640087_641095_-	PRK10508, PRK10508, luciferase-like monooxygenase	NA|293aa|up_8|NZ_CP040067.1_641300_642179_-	PRK15447, PRK15447, putative protease; Provisional	NA|332aa|up_7|NZ_CP040067.1_642187_643183_-	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|175aa|up_6|NZ_CP040067.1_643391_643916_+	COG3154, COG3154, Putative lipid carrier protein [Lipid metabolism]	NA|168aa|up_5|NZ_CP040067.1_643909_644413_+	COG3153, COG3153, Predicted acetyltransferase [General function prediction only]	NA|101aa|up_4|NZ_CP040067.1_644399_644702_-	PRK00329, PRK00329, GIY-YIG nuclease superfamily protein; Validated	NA|148aa|up_3|NZ_CP040067.1_644752_645196_+	PRK03467, PRK03467, hypothetical protein; Provisional	NA|173aa|up_2|NZ_CP040067.1_645175_645694_-	cd03134, GATase1_PfpI_like, A type 1 glutamine amidotransferase (GATase1)-like domain found in PfpI from Pyrococcus furiosus	NA|212aa|up_1|NZ_CP040067.1_645821_646457_+	cd05250, CC3_like_SDR_a, CC3(TIP30)-like, atypical (a) SDRs	NA|347aa|up_0|NZ_CP040067.1_646529_647570_+	COG0701, COG0701, Predicted permeases [General function prediction only]	NA|192aa|down_0|NZ_CP040067.1_647774_648350_-	PRK11023, PRK11023, divisome-associated lipoprotein YraP	NA|197aa|down_1|NZ_CP040067.1_648359_648950_-	PRK10886, PRK10886, DnaA initiator-associating protein DiaA; Provisional	NA|132aa|down_2|NZ_CP040067.1_648969_649365_-	TIGR00252, UPF0102_protein_HI_1656, TIGR00252 family protein	NA|679aa|down_3|NZ_CP040067.1_649322_651359_-	COG3107, LppC, Putative lipoprotein [General function prediction only]	NA|287aa|down_4|NZ_CP040067.1_651423_652284_+	PRK14994, PRK14994, SAM-dependent 16S ribosomal RNA C1402 ribose 2'-O-methyltransferase; Provisional	NA|364aa|down_5|NZ_CP040067.1_652326_653418_-	pfam00419, Fimbrial, Fimbrial protein	NA|791aa|down_6|NZ_CP040067.1_653428_655801_-	COG3188, FimD, P pilus assembly protein, porin PapC [Cell motility and secretion / Intracellular trafficking and secretion]	NA|232aa|down_7|NZ_CP040067.1_656751_657447_-	COG3121, FimC, P pilus assembly protein, chaperone PapD [Cell motility and secretion / Intracellular trafficking and secretion]	NA|195aa|down_8|NZ_CP040067.1_657526_658111_-	COG3539, FimA, P pilus assembly protein, pilin FimA [Cell motility and secretion / Intracellular trafficking and secretion]	NA|252aa|down_9|NZ_CP040067.1_658511_659267_-	PRK09762, PRK09762, galactosamine-6-phosphate isomerase; Provisional
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	2	693299-693416	2	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TGCCGGATGCGATGCTGGCGCACCTTATCCGGCCTACGGG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|55aa|down_0|NZ_CP040067.1_693489_693654_-	NA|115aa|up_9|NZ_CP040067.1_680243_680588_-	PRK11424, PRK11424, DNA-binding transcriptional activator TdcR; Provisional	NA|313aa|up_8|NZ_CP040067.1_680776_681715_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|330aa|up_7|NZ_CP040067.1_681813_682803_+	PRK08638, PRK08638, bifunctional threonine ammonia-lyase/L-serine ammonia-lyase TdcB	NA|363aa|up_6|NZ_CP040067.1_682824_683913_+	PRK13629, PRK13629, threonine/serine transporter TdcC; Provisional	NA|403aa|up_5|NZ_CP040067.1_684958_686167_+	PRK12379, PRK12379, propionate kinase	NA|765aa|up_4|NZ_CP040067.1_686200_688495_+	cd01678, PFL1, Pyruvate formate lyase 1	NA|130aa|up_3|NZ_CP040067.1_688508_688898_+	PRK11401, PRK11401, enamine/imine deaminase	NA|455aa|up_2|NZ_CP040067.1_688969_690334_+	PRK15040, PRK15040, L-serine ammonia-lyase	NA|444aa|up_1|NZ_CP040067.1_690608_691940_+	TIGR00814, membrane_transport_protein_YhjV, serine transporter	NA|437aa|up_0|NZ_CP040067.1_691967_693278_+	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|55aa|down_0|NZ_CP040067.1_693489_693654_-	NA	NA|234aa|down_1|NZ_CP040067.1_693676_694378_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|299aa|down_2|NZ_CP040067.1_694482_695379_+	cd08431, PBP2_HupR, The C-terminal substrate binding domain of LysR-type transcriptional regulator, HupR, which regulates expression of the heme uptake receptor HupA; contains the type 2 periplasmic binding fold	NA|119aa|down_3|NZ_CP040067.1_695429_695786_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|122aa|down_4|NZ_CP040067.1_696027_696393_-	COG3152, COG3152, Predicted membrane protein [Function unknown]	NA|329aa|down_5|NZ_CP040067.1_696685_697672_-	COG0435, ECM4, Predicted glutathione S-transferase [Posttranslational modification, protein turnover, chaperones]	NA|161aa|down_6|NZ_CP040067.1_697741_698224_-	COG2259, COG2259, Predicted membrane protein [Function unknown]	NA|100aa|down_7|NZ_CP040067.1_698319_698619_-	pfam13997, YqjK, YqjK-like protein	NA|135aa|down_8|NZ_CP040067.1_698608_699013_-	COG5393, COG5393, Predicted membrane protein [Function unknown]	NA|102aa|down_9|NZ_CP040067.1_699015_699321_-	COG4575, ElaB, Uncharacterized conserved protein [Function unknown]
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	3	1136007-1136523	1,3,1	PILER-CR,CRISPRCasFinder,CRT	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	8,8,8	8	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|47aa|up_1|NZ_CP040067.1_1134716_1134857_-,NA	NA|434aa|up_9|NZ_CP040067.1_1125413_1126715_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP040067.1_1126762_1128997_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP040067.1_1129074_1129323_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP040067.1_1129322_1129658_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP040067.1_1129728_1130520_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP040067.1_1130747_1132385_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP040067.1_1132472_1133771_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP040067.1_1133830_1134703_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP040067.1_1134716_1134857_-	NA	NA|224aa|up_0|NZ_CP040067.1_1134995_1135667_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP040067.1_1137160_1138639_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP040067.1_1138665_1139943_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP040067.1_1140261_1141047_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP040067.1_1141116_1142571_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP040067.1_1142664_1144002_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP040067.1_1143979_1144759_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP040067.1_1144755_1145616_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP040067.1_1145763_1146339_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP040067.1_1146355_1146616_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP040067.1_1146606_1147878_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	4	1158908-1159486	4,2,2	CRISPRCasFinder,PILER-CR,CRT	no	cas5,cas6e,cas1,cas2	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,29,29	0	0	NA	NA	I-E:I-E:I-E	9,9,9	9	Unclear	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|424aa|up_9|NZ_CP040067.1_1146606_1147878_-	PRK10015, PRK10015, oxidoreductase; Provisional	NA|122aa|up_8|NZ_CP040067.1_1147955_1148321_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_7|NZ_CP040067.1_1148636_1150436_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_6|NZ_CP040067.1_1150435_1152148_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_5|NZ_CP040067.1_1152221_1152956_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|51aa|up_4|NZ_CP040067.1_1153220_1153373_+	pfam01848, HOK_GEF, Hok/gef family	cas5|249aa|up_3|NZ_CP040067.1_1156223_1156970_+	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas6e|217aa|up_2|NZ_CP040067.1_1156951_1157602_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|308aa|up_1|NZ_CP040067.1_1157598_1158522_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|98aa|up_0|NZ_CP040067.1_1158518_1158812_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP040067.1_1159567_1160605_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP040067.1_1160856_1161765_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP040067.1_1161766_1163194_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP040067.1_1163193_1163799_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP040067.1_1163848_1164172_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP040067.1_1164365_1164677_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP040067.1_1164695_1165406_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP040067.1_1165405_1165885_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP040067.1_1165881_1166931_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP040067.1_1166911_1167673_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	5	1661586-1661703	5	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|105aa|up_3|NZ_CP040067.1_1656666_1656981_-,NA	NA|300aa|up_9|NZ_CP040067.1_1648579_1649479_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_8|NZ_CP040067.1_1649671_1650862_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_7|NZ_CP040067.1_1650858_1652118_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_6|NZ_CP040067.1_1652107_1653736_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_5|NZ_CP040067.1_1654008_1655367_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_4|NZ_CP040067.1_1655371_1656448_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|105aa|up_3|NZ_CP040067.1_1656666_1656981_-	NA	NA|217aa|up_2|NZ_CP040067.1_1659400_1660051_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP040067.1_1660104_1660359_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP040067.1_1660358_1661489_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP040067.1_1661722_1664008_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP040067.1_1664703_1668456_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP040067.1_1668583_1669306_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP040067.1_1669452_1672080_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP040067.1_1672228_1673917_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP040067.1_1673913_1674537_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP040067.1_1674680_1679075_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP040067.1_1679075_1680725_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP040067.1_1680729_1681506_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP040067.1_1681579_1682764_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	6	2225046-2225169	6	CRISPRCasFinder	no	DEDDh	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|30aa|down_7|NZ_CP040067.1_2234065_2234155_+	NA|471aa|up_9|NZ_CP040067.1_2214500_2215913_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP040067.1_2216468_2216678_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP040067.1_2217133_2217760_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP040067.1_2217780_2219883_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP040067.1_2219886_2220534_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP040067.1_2220597_2221266_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP040067.1_2221262_2222048_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP040067.1_2222051_2222864_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP040067.1_2222875_2224480_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP040067.1_2224605_2224911_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP040067.1_2225483_2226740_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP040067.1_2226780_2228154_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP040067.1_2228368_2229010_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP040067.1_2229049_2230198_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP040067.1_2230488_2231700_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP040067.1_2231812_2232745_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP040067.1_2232741_2233767_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP040067.1_2234065_2234155_+	NA	NA|390aa|down_8|NZ_CP040067.1_2234320_2235490_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP040067.1_2235635_2236217_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	7	2878301-2878392	7	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|503aa|up_9|NZ_CP040067.1_2865885_2867394_-	PRK15419, PRK15419, sodium/proline symporter PutP	NA|1321aa|up_8|NZ_CP040067.1_2867815_2871778_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_7|NZ_CP040067.1_2871817_2872456_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|364aa|up_6|NZ_CP040067.1_2872743_2873835_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP040067.1_2873834_2874527_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP040067.1_2874538_2874925_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP040067.1_2874932_2875733_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP040067.1_2875742_2876333_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP040067.1_2876343_2876838_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP040067.1_2876858_2878187_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP040067.1_2878815_2879412_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP040067.1_2879432_2879660_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP040067.1_2879697_2880939_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|420aa|down_3|NZ_CP040067.1_2881230_2882490_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP040067.1_2882749_2883670_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP040067.1_2883669_2883975_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP040067.1_2884067_2884667_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP040067.1_2884663_2887210_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP040067.1_2887209_2888382_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP040067.1_2888511_2889204_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	8	3182819-3182930	3	PILER-CR	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	TTTTCTTACCTGATTCGGGTAA	22	1	1	3182888-3182913	NZ_CP040067.1_2744785-2744810	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|34aa|up_5|NZ_CP040067.1_3179675_3179777_-,NA|64aa|up_2|NZ_CP040067.1_3181135_3181327_+,NA|98aa|up_1|NZ_CP040067.1_3181363_3181657_-,NA|250aa|down_3|NZ_CP040067.1_3185123_3185873_+	NA|121aa|up_9|NZ_CP040067.1_3178411_3178774_-	PRK09786, PRK09786, endodeoxyribonuclease RUS; Reviewed	NA|97aa|up_8|NZ_CP040067.1_3178770_3179061_-	pfam07102, DUF1364, Protein of unknown function (DUF1364)	NA|57aa|up_7|NZ_CP040067.1_3179053_3179224_-	PRK09689, PRK09689, prophage protein NinE; Provisional	NA|152aa|up_6|NZ_CP040067.1_3179223_3179679_-	PRK09741, PRK09741, hypothetical protein; Provisional	NA|34aa|up_5|NZ_CP040067.1_3179675_3179777_-	NA	NA|151aa|up_4|NZ_CP040067.1_3179869_3180322_-	COG3133, SlyB, Outer membrane lipoprotein [Cell envelope biogenesis, outer membrane]	NA|187aa|up_3|NZ_CP040067.1_3180318_3180879_-	PRK13883, PRK13883, conjugal transfer protein TrbH; Provisional	NA|64aa|up_2|NZ_CP040067.1_3181135_3181327_+	NA	NA|98aa|up_1|NZ_CP040067.1_3181363_3181657_-	NA	NA|234aa|up_0|NZ_CP040067.1_3181653_3182355_-	pfam06992, Phage_lambda_P, Replication protein P	NA|180aa|down_0|NZ_CP040067.1_3183367_3183907_-	pfam06254, YdaT_toxin, Putative bacterial toxin ydaT	NA|77aa|down_1|NZ_CP040067.1_3183976_3184207_-	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT	NA|230aa|down_2|NZ_CP040067.1_3184311_3185001_+	COG2932, COG2932, Predicted transcriptional regulator [Transcription]	NA|250aa|down_3|NZ_CP040067.1_3185123_3185873_+	NA	NA|276aa|down_4|NZ_CP040067.1_3185869_3186697_+	pfam11236, DUF3037, Protein of unknown function (DUF3037)	NA|69aa|down_5|NZ_CP040067.1_3187205_3187412_+	PRK11354, kil, FtsZ inhibitor protein; Reviewed	NA|99aa|down_6|NZ_CP040067.1_3187487_3187784_+	pfam06064, Gam, Host-nuclease inhibitor protein Gam	NA|262aa|down_7|NZ_CP040067.1_3187789_3188575_+	TIGR01913, Uncharacterized_protein_UU154, phage recombination protein Bet	NA|227aa|down_8|NZ_CP040067.1_3188571_3189252_+	pfam09588, YqaJ, YqaJ-like viral recombinase domain	NA|61aa|down_9|NZ_CP040067.1_3189248_3189431_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	9	3194220-3194364	8	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA|94aa|up_7|NZ_CP040067.1_3189605_3189887_+,NA|201aa|up_5|NZ_CP040067.1_3190417_3191020_-,NA|62aa|up_4|NZ_CP040067.1_3191144_3191330_-,NA|56aa|up_3|NZ_CP040067.1_3191262_3191430_+,NA	NA|61aa|up_9|NZ_CP040067.1_3189248_3189431_+	pfam07026, DUF1317, Protein of unknown function (DUF1317)	NA|64aa|up_8|NZ_CP040067.1_3189403_3189595_+	pfam07131, DUF1382, Protein of unknown function (DUF1382)	NA|94aa|up_7|NZ_CP040067.1_3189605_3189887_+	NA	NA|74aa|up_6|NZ_CP040067.1_3189985_3190207_+	PHA00080, PHA00080, DksA-like zinc finger domain containing protein	NA|201aa|up_5|NZ_CP040067.1_3190417_3191020_-	NA	NA|62aa|up_4|NZ_CP040067.1_3191144_3191330_-	NA	NA|56aa|up_3|NZ_CP040067.1_3191262_3191430_+	NA	NA|73aa|up_2|NZ_CP040067.1_3191469_3191688_+	pfam07825, Exc, Excisionase-like protein	NA|357aa|up_1|NZ_CP040067.1_3191665_3192736_+	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase	NA|428aa|up_0|NZ_CP040067.1_3192870_3194154_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP040067.1_3194387_3196649_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP040067.1_3196831_3198265_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP040067.1_3198340_3199393_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP040067.1_3199576_3200530_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP040067.1_3200570_3201566_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP040067.1_3201720_3202539_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP040067.1_3202539_3203598_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP040067.1_3203600_3204290_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP040067.1_3204289_3205063_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP040067.1_3205229_3205379_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	10	3880546-3880661	9	CRISPRCasFinder	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	AACGCCTGATGCGACGCTGACGCGTCTTATC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA	NA|393aa|up_9|NZ_CP040067.1_3868561_3869740_-	TIGR00899, Sugar_efflux_transporter_A, sugar efflux transporter	NA|44aa|up_8|NZ_CP040067.1_3869841_3869973_-	pfam15894, SgrT, Inhibitor of glucose uptake transporter SgrT	NA|552aa|up_7|NZ_CP040067.1_3870061_3871717_+	PRK13626, PRK13626, HTH-type transcriptional regulator SgrR	NA|328aa|up_6|NZ_CP040067.1_3871880_3872864_+	PRK11205, tbpA, thiamine transporter substrate binding subunit; Provisional	NA|537aa|up_5|NZ_CP040067.1_3872839_3874450_+	PRK09433, thiP, thiamine transporter membrane protein; Reviewed	NA|233aa|up_4|NZ_CP040067.1_3874433_3875132_+	PRK10771, thiQ, thiamine ABC transporter ATP-binding protein ThiQ	NA|255aa|up_3|NZ_CP040067.1_3875245_3876010_-	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown]	NA|293aa|up_2|NZ_CP040067.1_3876095_3876974_-	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC	NA|567aa|up_1|NZ_CP040067.1_3877312_3879013_+	PRK04123, PRK04123, ribulokinase; Provisional	NA|501aa|up_0|NZ_CP040067.1_3879023_3880526_+	PRK02929, PRK02929, L-arabinose isomerase; Provisional	NA|232aa|down_0|NZ_CP040067.1_3880725_3881421_+	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD	NA|784aa|down_1|NZ_CP040067.1_3881495_3883847_+	PRK05762, PRK05762, DNA polymerase II; Reviewed	NA|969aa|down_2|NZ_CP040067.1_3883999_3886906_+	PRK04914, PRK04914, RNA polymerase-associated protein RapA	NA|220aa|down_3|NZ_CP040067.1_3886917_3887577_+	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA	NA|272aa|down_4|NZ_CP040067.1_3887693_3888509_-	PRK09430, djlA, co-chaperone DjlA	NA|785aa|down_5|NZ_CP040067.1_3888763_3891118_+	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional	NA|429aa|down_6|NZ_CP040067.1_3891170_3892457_+	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional	NA|330aa|down_7|NZ_CP040067.1_3892456_3893446_+	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed	NA|274aa|down_8|NZ_CP040067.1_3893442_3894264_+	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA	NA|126aa|down_9|NZ_CP040067.1_3894266_3894644_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed
GCF_006352265.1_ASM635226v1	NZ_CP040067	Escherichia coli strain A1_181 chromosome, complete genome	11	3903562-3903694	4	PILER-CR	no		cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	Orphan	ATCACCAATATTGAAAA	17	0	0	NA	NA	NA	2	2	Orphan	cas3,RT,csa3,PD-DExK,WYL,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	NA,NA|73aa|down_7|NZ_CP040067.1_3911610_3911829_+	NA|126aa|up_9|NZ_CP040067.1_3894266_3894644_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP040067.1_3894650_3895493_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP040067.1_3895570_3896050_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP040067.1_3896241_3898104_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP040067.1_3898096_3898627_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP040067.1_3898734_3900066_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP040067.1_3900123_3900411_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP040067.1_3900407_3901694_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP040067.1_3901744_3902686_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP040067.1_3902700_3903471_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP040067.1_3903944_3905459_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP040067.1_3905489_3906632_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP040067.1_3906760_3907978_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|518aa|down_3|NZ_CP040067.1_3908051_3909605_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP040067.1_3909713_3910499_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP040067.1_3910504_3911095_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP040067.1_3911180_3911576_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|73aa|down_7|NZ_CP040067.1_3911610_3911829_+	NA	NA|1074aa|down_8|NZ_CP040067.1_3911836_3915058_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_9|NZ_CP040067.1_3915075_3916224_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit
