The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	2755072	45361	54404	2755072	tRNA	uncultured_Mediterranean_phage(50.0%)	7	NA	NA
WP_001005767.1|45361_46366_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_001019172.1|46367_47393_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001112045.1|47415_48555_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001160682.1|48573_48834_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_000749795.1|49108_51388_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_000594993.1|51590_53864_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
WP_000364542.1|53885_54404_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
>prophage 2
NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	2755072	123542	131854	2755072	tRNA	Caulobacter_phage(16.67%)	7	NA	NA
WP_001217261.1|123542_125342_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	4.6e-54
WP_001283055.1|125565_126672_+	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_000624584.1|126802_127480_+|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_000683931.1|127482_128583_+	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_001062180.1|128696_130043_+	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000924214.1|130052_130943_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001213908.1|131068_131854_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
>prophage 3
NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	2755072	670559	679032	2755072		Synechococcus_phage(33.33%)	9	NA	NA
WP_000238664.1|670559_671126_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
WP_000030812.1|671128_672157_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000483713.1|672149_673634_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000032727.1|673612_675802_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000666799.1|675794_676466_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA	NA
WP_000848350.1|676467_676731_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000174053.1|676730_677435_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_002871056.1|677438_678563_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000861572.1|678549_679032_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
>prophage 4
NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	2755072	835694	882618	2755072	head,holin,plate,portal,capsid,terminase,integrase,tail	Staphylococcus_phage(94.37%)	73	849768:849784	884515:884531
WP_000382163.1|835694_835895_-	hypothetical protein	NA	W5R9N2	Staphylococcus_phage	100.0	3.7e-29
WP_000139423.1|835881_835992_-	hypothetical protein	NA	W5R8J7	Staphylococcus_phage	100.0	1.7e-12
WP_001788502.1|836062_836215_-	hypothetical protein	NA	A0A0F6N3H2	Staphylococcus_phage	100.0	3.1e-20
WP_001035620.1|836589_837147_+	DUF4888 domain-containing protein	NA	A0A0F6N4L1	Staphylococcus_phage	100.0	7.4e-96
WP_001141517.1|837206_838619_-	CHAP domain-containing protein	NA	A0A0F6N3N1	Staphylococcus_phage	100.0	5.8e-286
WP_000351119.1|838605_838881_-|holin	phage holin	holin	A0A0F6N3M0	Staphylococcus_phage	100.0	8.6e-45
WP_000398872.1|838936_839332_-	hypothetical protein	NA	A0A0F6N3G8	Staphylococcus_phage	100.0	1.2e-68
WP_000276662.1|839337_840576_-|plate	BppU family phage baseplate upper protein	plate	A0A0F6N3G7	Staphylococcus_phage	100.0	1.6e-210
WP_001836236.1|840588_842487_-	CHAP domain-containing protein	NA	A0A0F6N4K6	Staphylococcus_phage	100.0	0.0e+00
WP_000466777.1|842623_842923_-	DUF2951 domain-containing protein	NA	A0A0F6N3M6	Staphylococcus_phage	100.0	9.9e-47
WP_000782200.1|842962_843136_-	XkdX family protein	NA	A0A0F6N3L7	Staphylococcus_phage	100.0	6.6e-27
WP_000705896.1|843139_843517_-	DUF2977 domain-containing protein	NA	A0A0F6N3G4	Staphylococcus_phage	100.0	1.5e-60
WP_000634521.1|843516_845340_-|plate	phage baseplate upper protein	plate	A0A0F6N3G2	Staphylococcus_phage	100.0	0.0e+00
WP_001836235.1|845339_847250_-	hypothetical protein	NA	A0A0F6N4K2	Staphylococcus_phage	100.0	0.0e+00
WP_000152718.1|847264_849163_-	peptidase	NA	A0A0F6N3M1	Staphylococcus_phage	100.0	0.0e+00
WP_000350675.1|849171_850119_-|tail	phage tail family protein	tail	A0A0F6N3L4	Staphylococcus_phage	100.0	2.8e-183
849768:849784	attL	TGTTTTTATCTAATTTC	NA	NA	NA	NA
WP_000141480.1|850131_853599_-	hypothetical protein	NA	A0A0F6N3F9	Staphylococcus_phage	100.0	4.2e-245
WP_000105584.1|853615_853960_-	hypothetical protein	NA	A0A0F6N3F7	Staphylococcus_phage	100.0	2.5e-57
WP_001100161.1|853989_854355_-	hypothetical protein	NA	A0A0F6N4J9	Staphylococcus_phage	100.0	3.6e-59
WP_000002577.1|854416_854998_-|tail	phage major tail protein, TP901-1 family	tail	A0A0F6N3L8	Staphylococcus_phage	100.0	4.9e-106
WP_000188649.1|855016_855400_-	hypothetical protein	NA	A0A0F6N3L1	Staphylococcus_phage	100.0	1.5e-68
WP_001017815.1|855411_855759_-	HK97 gp10 family phage protein	NA	A0A0F6N3F5	Staphylococcus_phage	100.0	4.1e-60
WP_025175363.1|855758_856061_-	hypothetical protein	NA	B2ZYY8	Staphylococcus_phage	98.0	7.4e-50
WP_000208960.1|856057_856390_-|head,tail	phage head-tail connector protein	head,tail	A0A0F6N3F4	Staphylococcus_phage	100.0	5.5e-54
WP_001836234.1|856398_856686_-	hypothetical protein	NA	A0A0F6N4J3	Staphylococcus_phage	100.0	1.6e-46
WP_001836233.1|856707_857682_-|capsid	phage major capsid protein	capsid	A0A0F6N3L5	Staphylococcus_phage	100.0	3.7e-183
WP_000392146.1|857695_858316_-	DUF4355 domain-containing protein	NA	A0A0F6N3K8	Staphylococcus_phage	100.0	2.1e-70
WP_000072208.1|858424_858595_-	hypothetical protein	NA	A0A0F6N3E9	Staphylococcus_phage	100.0	1.5e-23
WP_001133044.1|858667_859663_-|head	phage head morphogenesis protein	head	A0A0F6N3F1	Staphylococcus_phage	100.0	2.0e-184
WP_000909970.1|859669_861208_-|portal	phage portal protein	portal	A0A0F6N4I8	Staphylococcus_phage	100.0	2.4e-293
WP_001836232.1|861218_862514_-|terminase	PBSX family phage terminase large subunit	terminase	A0A0F6N3L3	Staphylococcus_phage	99.8	2.0e-256
WP_001038244.1|862516_863011_-|terminase	terminase small subunit	terminase	A0A0F6N3K6	Staphylococcus_phage	100.0	7.8e-89
WP_000162701.1|863198_863621_-	RinA family phage transcriptional activator	NA	A0A0F6N3E5	Staphylococcus_phage	100.0	1.2e-74
WP_000990005.1|863644_863791_-	hypothetical protein	NA	B2ZYX7	Staphylococcus_phage	100.0	2.2e-15
WP_001657250.1|863791_863965_-	transcriptional activator RinB	NA	A0A0F6N3E7	Staphylococcus_phage	100.0	2.2e-22
WP_001072794.1|863957_864161_-	hypothetical protein	NA	B2ZYX5	Staphylococcus_phage	98.5	8.8e-31
WP_000132920.1|864157_864352_-	hypothetical protein	NA	S4SX95	Staphylococcus_phage	100.0	7.9e-29
WP_000195785.1|864348_864555_-	DUF1381 domain-containing protein	NA	A0A0F6N4I4	Staphylococcus_phage	100.0	1.1e-20
WP_000185651.1|864591_865122_-	dUTP pyrophosphatase	NA	A0A0F6N3L0	Staphylococcus_phage	100.0	1.7e-94
WP_000028421.1|865114_865297_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	98.3	1.0e-25
WP_001836226.1|865286_865538_-	DUF1024 family protein	NA	A0A1W6JPK6	Staphylococcus_phage	98.8	2.1e-37
WP_001557190.1|865530_865902_-	hypothetical protein	NA	A0A0F6N3K4	Staphylococcus_phage	100.0	3.6e-54
WP_001562543.1|865910_866153_-	phage protein	NA	A0A0F6N3E1	Staphylococcus_phage	100.0	6.6e-41
WP_000029376.1|866156_866513_-	hypothetical protein	NA	A0A0F6N3E3	Staphylococcus_phage	100.0	6.5e-61
WP_000101252.1|866640_866946_-	hypothetical protein	NA	A0A0F6N4H9	Staphylococcus_phage	100.0	1.7e-49
WP_001187243.1|866946_867132_-	DUF3113 family protein	NA	A0A0F6N3K7	Staphylococcus_phage	100.0	1.1e-27
WP_001836225.1|867136_867541_-	DUF1064 domain-containing protein	NA	A1KX76	Staphylococcus_virus	99.3	3.6e-68
WP_001123695.1|867550_867772_-	DUF3269 family protein	NA	A0A0H3U2V4	Staphylococcus_phage	100.0	2.2e-35
WP_000256589.1|867784_867943_-	hypothetical protein	NA	A0A2H4PQI7	Staphylococcus_phage	100.0	4.5e-22
WP_000803062.1|867936_868716_-	ATP-binding protein	NA	G4KNP1	Staphylococcus_phage	100.0	3.8e-146
WP_001836222.1|868725_869496_-	hypothetical protein	NA	G4KNP0	Staphylococcus_phage	99.6	9.3e-121
WP_000414755.1|869561_869843_+	hypothetical protein	NA	A0A1W6JPU7	Staphylococcus_phage	100.0	2.6e-49
WP_000057263.1|869981_870656_-	hypothetical protein	NA	A1KX69	Staphylococcus_virus	100.0	3.9e-131
WP_001099009.1|870667_871111_-	single-stranded DNA-binding protein	NA	A0A2I6PD99	Staphylococcus_phage	100.0	1.8e-76
WP_000840496.1|871107_871758_-	single-stranded DNA-binding protein	NA	A0A0F6N3I5	Staphylococcus_phage	100.0	1.1e-119
WP_001004336.1|871758_872295_-	hypothetical protein	NA	A0A0F6N4M6	Staphylococcus_phage	100.0	1.4e-80
WP_001836221.1|872307_872568_-	DUF1108 family protein	NA	A0A0F6N3P1	Staphylococcus_phage	100.0	1.2e-43
WP_000165363.1|872572_872875_-	DUF2482 family protein	NA	A0A0F6N3N3	Staphylococcus_phage	100.0	1.4e-48
WP_000066011.1|872968_873130_-	DUF1270 domain-containing protein	NA	Q4ZAZ7	Staphylococcus_virus	100.0	2.5e-20
WP_000977381.1|873122_873344_-	hypothetical protein	NA	A0A0F6N3I2	Staphylococcus_phage	100.0	1.5e-31
WP_001836220.1|873357_873807_-	hypothetical protein	NA	A0A0F6N3I1	Staphylococcus_phage	100.0	3.0e-79
WP_000187184.1|873846_874071_-	hypothetical protein	NA	A0A0F6N4M2	Staphylococcus_phage	100.0	3.2e-34
WP_001002757.1|874071_874839_-	phage antirepressor Ant	NA	A0A0F6N3N8	Staphylococcus_phage	100.0	1.1e-142
WP_000108122.1|874838_875033_-	helix-turn-helix transcriptional regulator	NA	A0A0F6N3M9	Staphylococcus_phage	100.0	1.1e-25
WP_001055143.1|875295_875628_+	helix-turn-helix transcriptional regulator	NA	R4IH08	Staphylococcus_phage	100.0	4.1e-57
WP_000775187.1|875644_876319_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0F6N3H6	Staphylococcus_phage	100.0	4.9e-126
WP_000661437.1|876346_877072_+	hypothetical protein	NA	A0A0F6N4L7	Staphylococcus_phage	100.0	9.9e-125
WP_000391592.1|877103_878009_+	hypothetical protein	NA	A0A0F6N3N6	Staphylococcus_phage	100.0	1.4e-168
WP_000143212.1|877945_878146_-	excisionase	NA	Q38044	Staphylococcus_phage	100.0	5.6e-30
WP_001145725.1|878257_879307_+|integrase	site-specific integrase	integrase	A0A0F6N3M4	Staphylococcus_phage	100.0	9.1e-204
WP_001074405.1|879374_880772_-	Fe-S cluster assembly protein SufB	NA	NA	NA	NA	NA
WP_001010508.1|880922_881387_-	SUF system NifU family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_000807671.1|881376_882618_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	44.5	1.1e-110
884515:884531	attR	TGTTTTTATCTAATTTC	NA	NA	NA	NA
>prophage 5
NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	2755072	967875	982606	2755072		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000616842.1|967875_968637_-	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
WP_001245578.1|968633_969590_-	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000876318.1|969576_970548_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_000499195.1|970586_970742_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000562498.1|971255_972227_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000855505.1|972344_974450_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000692521.1|974412_974811_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_001068497.1|975611_976478_+	DMT family transporter	NA	NA	NA	NA	NA
WP_000930014.1|976497_976998_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_000193751.1|977338_978844_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_001790641.1|978921_979023_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000429014.1|979113_980031_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_000197271.1|980654_981197_-	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_001836199.1|981547_982606_-	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.4	1.8e-21
>prophage 6
NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	2755072	994578	1002398	2755072		Pandoravirus(16.67%)	10	NA	NA
WP_001217785.1|994578_995730_-	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
WP_000604514.1|995713_996307_-	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_000446724.1|996657_997326_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000941336.1|997327_997747_+	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_001062972.1|997750_998464_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	43.5	6.5e-52
WP_000637687.1|998562_999147_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001093553.1|999426_999867_+	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_001037807.1|1000208_1000682_+	DoxX family protein	NA	NA	NA	NA	NA
WP_000149344.1|1000656_1001343_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000244412.1|1001342_1002398_+	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
>prophage 7
NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	2755072	2558234	2659277	2755072	transposase,protease,tRNA	Staphylococcus_phage(89.66%)	101	NA	NA
WP_047930299.1|2558234_2559338_-|transposase	ISL3 family transposase	transposase	NA	NA	NA	NA
WP_153801567.1|2559319_2559472_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000063582.1|2559928_2560990_+	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_000649907.1|2561247_2562705_+	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_001144055.1|2562691_2563420_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_001789049.1|2563555_2564698_+|tRNA	tRNA epoxyqueuosine(34) reductase QueG	tRNA	NA	NA	NA	NA
WP_000181398.1|2564702_2565173_+|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001251224.1|2565331_2565931_+	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000031108.1|2565955_2566108_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000901021.1|2566884_2567280_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000116224.1|2567475_2568861_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000669376.1|2569323_2570145_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000437967.1|2570307_2571420_+	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_001045133.1|2571441_2572065_+	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000375864.1|2572420_2572885_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000992527.1|2573063_2574188_+	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000290301.1|2574256_2574601_+	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_001791795.1|2574983_2575082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000238227.1|2575372_2576569_+	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_000584648.1|2576558_2579495_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_001244175.1|2579491_2580433_+	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000782121.1|2580553_2581516_-	foldase	NA	NA	NA	NA	NA
WP_000477959.1|2581720_2582278_-	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000648118.1|2583010_2583376_-	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000004981.1|2583517_2583940_-	HIT family protein	NA	NA	NA	NA	NA
WP_000216878.1|2584073_2584814_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_001836284.1|2584806_2586030_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_000737976.1|2586153_2586657_-	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001790154.1|2586819_2586930_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000233526.1|2586919_2587957_+	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_000162881.1|2588014_2588938_+	ferrochelatase	NA	NA	NA	NA	NA
WP_000167538.1|2588961_2590362_+	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000132889.1|2590684_2591239_+	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000206350.1|2593695_2594484_-	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
WP_001790220.1|2594496_2595036_-	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000878802.1|2595849_2596770_+	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	100.0	2.3e-174
WP_000782464.1|2596771_2597755_+	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_000416759.1|2597996_2598140_+	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000416756.1|2598876_2599020_+	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_001092605.1|2599084_2602078_+	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000566596.1|2602070_2603315_+	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	100.0	5.1e-238
WP_000504439.1|2603330_2603849_+	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000691541.1|2603858_2605232_+	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_001096791.1|2605254_2605947_+	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000581552.1|2605943_2606705_+	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_000586140.1|2606701_2607400_+	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_001092763.1|2607873_2608440_-	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_001836281.1|2609403_2610111_+|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	99.6	1.7e-129
WP_001039447.1|2610235_2610958_+|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001836279.1|2611015_2611735_+|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	98.7	2.1e-130
WP_001038704.1|2611855_2612575_+|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_011447030.1|2612523_2612631_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038759.1|2612732_2613449_+|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_001038688.1|2613599_2614319_+|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001791797.1|2614383_2614518_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001793440.1|2614498_2616238_+	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	100.0	2.4e-289
WP_000072624.1|2616230_2617430_+	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	100.0	8.5e-230
WP_000831218.1|2618279_2622392_+	SMEK domain-containing protein	NA	A0A2H4PQT3	Staphylococcus_phage	100.0	0.0e+00
WP_002868972.1|2622929_2623289_+	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_001791893.1|2623636_2623738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001801861.1|2623860_2623956_-	type I toxin-antitoxin system Fst family toxin PepA1	NA	NA	NA	NA	NA
WP_001549059.1|2624158_2624302_+|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_000070812.1|2624905_2625289_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|2625299_2625476_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000809857.1|2625477_2625663_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000494956.1|2625776_2626418_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000414205.1|2626635_2627187_-	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000627551.1|2627284_2627629_-	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000669046.1|2627669_2628296_-	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000070653.1|2628371_2629367_-	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_001795535.1|2629447_2630098_-	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_011443643.1|2630400_2630856_+	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_000348360.1|2631014_2632493_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_000778523.1|2632497_2633499_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000718107.1|2633495_2633753_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000672014.1|2633818_2634292_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_002868962.1|2634296_2635043_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000093392.1|2635417_2635903_+|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_000109906.1|2636038_2637631_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000933822.1|2638001_2639195_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000366154.1|2639319_2640228_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000453320.1|2640439_2641273_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000623471.1|2643356_2643710_-	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_001200542.1|2643706_2644072_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000091445.1|2644327_2644630_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096494.1|2644889_2645603_+	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_001168904.1|2646042_2646678_-|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001030465.1|2646973_2647417_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001153742.1|2647403_2647847_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000671063.1|2647959_2648430_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	98.1	3.3e-81
WP_000384171.1|2648628_2648853_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032833.1|2649128_2649983_+	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000163235.1|2650277_2650673_-	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_000989123.1|2650690_2651983_-	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.3	1.9e-227
WP_000221179.1|2651982_2652297_-	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_001261681.1|2652819_2654322_+	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000384181.1|2654814_2655846_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_000493892.1|2655852_2656485_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.5	1.7e-112
WP_001159022.1|2656495_2657677_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_001008551.1|2657689_2658154_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001196354.1|2658275_2659277_-	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
>prophage 8
NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	2755072	2662437	2675166	2755072	tRNA	Staphylococcus_phage(100.0%)	6	NA	NA
WP_000764419.1|2662437_2663001_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000526539.1|2662997_2663951_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_001025061.1|2664060_2665242_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_001108732.1|2665532_2667947_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_000836465.1|2667968_2668280_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001836275.1|2668605_2675166_+	LPXTG-anchored repetitive surface protein SasC	NA	A0A2H4PQU6	Staphylococcus_phage	97.9	1.3e-303
>prophage 1
NZ_CP040999	Staphylococcus aureus strain FDAARGOS_773 plasmid unnamed1, complete sequence	27489	0	3637	27489	bacteriocin	Bacillus_virus(100.0%)	4	NA	NA
WP_000726502.1|381_675_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000713732.1|749_2684_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000831610.1|2687_2999_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000593106.1|3010_3637_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	6.1e-22
>prophage 2
NZ_CP040999	Staphylococcus aureus strain FDAARGOS_773 plasmid unnamed1, complete sequence	27489	14179	27079	27489	transposase	Staphylococcus_phage(37.5%)	11	NA	NA
WP_000690626.1|14179_14755_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	2.9e-42
WP_000069452.1|15021_17067_+	copper-translocating P-type ATPase CopB	NA	A0A218MNH6	uncultured_virus	31.0	1.0e-70
WP_000277154.1|17081_18515_+	multi-copper oxidase Mco	NA	NA	NA	NA	NA
WP_000277738.1|18581_20228_-|transposase	IS1182 family transposase	transposase	A0ZS58	Staphylococcus_virus	98.4	1.0e-289
WP_000378396.1|20590_22771_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	63.7	9.3e-251
WP_000159128.1|22763_23129_-	winged helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	47.8	8.5e-24
WP_000361064.1|23366_23744_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001105942.1|23838_24513_+|transposase	IS6-like element ISSau6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	88.4	1.3e-113
WP_001035802.1|24547_24760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000120605.1|25475_25790_+	As(III)-sensing metalloregulatory transcriptional repressor ArsR	NA	A0A2H4PQT4	Staphylococcus_phage	73.1	4.7e-39
WP_000153630.1|25789_27079_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	81.4	6.6e-188
