assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	1	579698-579884	1	CRT	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	TCTATGTTGGGGCCCCGCC	19	3	27	579717-579753|579717-579753|579717-579753|579717-579753|579717-579753|579717-579753|579717-579753|579717-579753|579717-579753|579717-579753|579717-579753|579773-579809|579773-579809|579773-579809|579773-579809|579773-579809|579773-579809|579773-579809|579773-579809|579773-579809|579773-579809|579829-579865|579829-579865|579829-579865|579829-579865|579829-579865|579829-579865	NZ_CP040998.1_283228-283192|NZ_CP040998.1_933998-933962|NZ_CP040998.1_981488-981452|NZ_CP040998.1_2521967-2521931|NZ_CP040998.1_2522026-2521990|NZ_CP040998.1_371503-371539|NZ_CP040998.1_1097373-1097409|NZ_CP040998.1_1605832-1605868|NZ_CP040998.1_654349-654313|NZ_CP040998.1_2038762-2038726|NZ_CP040998.1_583685-583721|NZ_CP040998.1_371561-371597|NZ_CP040998.1_680546-680510|NZ_CP040998.1_934054-934018|NZ_CP040998.1_1379911-1379947|NZ_CP040998.1_103424-103388|NZ_CP040998.1_283170-283134|NZ_CP040998.1_1928301-1928265|NZ_CP040998.1_579661-579697|NZ_CP040998.1_583741-583777|NZ_CP040998.1_2205133-2205097|NZ_CP040998.1_2205189-2205153|NZ_CP040998.1_2680360-2680396|NZ_CP040998.1_103482-103446|NZ_CP040998.1_890913-890877|NZ_CP040998.1_2512677-2512641|NZ_CP040998.1_2013442-2013478	NA	3	3	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|76aa|up_6|NZ_CP040998.1_572456_572684_-,NA|75aa|down_0|NZ_CP040998.1_580039_580264_-,NA|49aa|down_1|NZ_CP040998.1_580220_580367_-,NA|78aa|down_3|NZ_CP040998.1_582475_582709_+,NA|62aa|down_4|NZ_CP040998.1_583330_583516_+,NA|31aa|down_8|NZ_CP040998.1_587080_587173_+	NA|45aa|up_9|NZ_CP040998.1_569721_569856_-	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|63aa|up_8|NZ_CP040998.1_570767_570956_-	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|316aa|up_7|NZ_CP040998.1_571204_572152_+	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|76aa|up_6|NZ_CP040998.1_572456_572684_-	NA	NA|502aa|up_5|NZ_CP040998.1_572991_574497_-	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|311aa|up_4|NZ_CP040998.1_574719_575652_-	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|334aa|up_3|NZ_CP040998.1_575674_576676_-	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|242aa|up_2|NZ_CP040998.1_577113_577839_+	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|242aa|up_1|NZ_CP040998.1_577933_578659_+	PRK13349, PRK13349, superantigen-like protein; Reviewed	NA|239aa|up_0|NZ_CP040998.1_578766_579483_+	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|75aa|down_0|NZ_CP040998.1_580039_580264_-	NA	NA|49aa|down_1|NZ_CP040998.1_580220_580367_-	NA	NA|320aa|down_2|NZ_CP040998.1_581039_581999_+	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|78aa|down_3|NZ_CP040998.1_582475_582709_+	NA	NA|62aa|down_4|NZ_CP040998.1_583330_583516_+	NA	NA|117aa|down_5|NZ_CP040998.1_584281_584632_-	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|166aa|down_6|NZ_CP040998.1_584785_585283_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|134aa|down_7|NZ_CP040998.1_586719_587121_+	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|31aa|down_8|NZ_CP040998.1_587080_587173_+	NA	NA|110aa|down_9|NZ_CP040998.1_587489_587819_-	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	2	797659-797967	2,1	CRT,CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	CCAACTTGCANNNTNTNNNNAGCTGNCTTT,CCAGCCTCTGTGTTGGGGCCCCG	30,23	3	5	797772-797797|797772-797797|797886-797911|797886-797911|797912-797944	NZ_CP040998.1_934026-934001|NZ_CP040998.1_1379939-1379964|NZ_CP040998.1_579689-579714|NZ_CP040998.1_971065-971090|NZ_CP040998.1_890645-890613	NA:NA	4,1	4	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA,NA	NA|301aa|up_9|NZ_CP040998.1_781783_782686_-	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|1218aa|up_8|NZ_CP040998.1_782851_786505_-	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|1159aa|up_7|NZ_CP040998.1_786505_789982_-	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|192aa|up_6|NZ_CP040998.1_790141_790717_-	TIGR02227, Inactive_signal_peptidase_IA	NA|175aa|up_5|NZ_CP040998.1_790732_791257_-	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|up_4|NZ_CP040998.1_791261_791837_-	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|444aa|up_3|NZ_CP040998.1_792161_793493_-	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|402aa|up_2|NZ_CP040998.1_793843_795049_+	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|460aa|up_1|NZ_CP040998.1_795038_796418_+	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|310aa|up_0|NZ_CP040998.1_796659_797589_+	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|415aa|down_0|NZ_CP040998.1_798091_799336_-	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|397aa|down_1|NZ_CP040998.1_799444_800635_-	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|376aa|down_2|NZ_CP040998.1_800942_802070_-	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|126aa|down_3|NZ_CP040998.1_802431_802809_-	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|198aa|down_4|NZ_CP040998.1_803224_803818_-	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|128aa|down_5|NZ_CP040998.1_803881_804265_+	pfam08810, KapB, Kinase associated protein B	NA|802aa|down_6|NZ_CP040998.1_804395_806801_+	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|143aa|down_7|NZ_CP040998.1_806793_807222_+	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|110aa|down_8|NZ_CP040998.1_807233_807563_+	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|499aa|down_9|NZ_CP040998.1_807555_809052_+	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	3	890893-890974	2	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	TTCTACAGGCAATGCAAGTTGGGG	24	1	2	890917-890950|890917-890950	NZ_CP040998.1_283175-283208|NZ_CP040998.1_371556-371523	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA,NA|38aa|down_1|NZ_CP040998.1_891957_892071_-	NA|414aa|up_9|NZ_CP040998.1_881376_882618_-	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|436aa|up_8|NZ_CP040998.1_882732_884040_-	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|254aa|up_7|NZ_CP040998.1_884137_884899_-	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|284aa|up_6|NZ_CP040998.1_885226_886078_+	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|65aa|up_5|NZ_CP040998.1_886310_886505_-	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|274aa|up_4|NZ_CP040998.1_886858_887680_-	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|232aa|up_3|NZ_CP040998.1_887697_888393_-	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|342aa|up_2|NZ_CP040998.1_888385_889411_-	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|99aa|up_1|NZ_CP040998.1_889660_889957_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|129aa|up_0|NZ_CP040998.1_889949_890336_-	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|293aa|down_0|NZ_CP040998.1_891077_891956_-	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|38aa|down_1|NZ_CP040998.1_891957_892071_-	NA	NA|127aa|down_2|NZ_CP040998.1_892134_892515_-	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|119aa|down_3|NZ_CP040998.1_892672_893029_-	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|107aa|down_4|NZ_CP040998.1_893172_893493_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|180aa|down_5|NZ_CP040998.1_893642_894182_-	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|239aa|down_6|NZ_CP040998.1_894264_894981_-	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|141aa|down_7|NZ_CP040998.1_895128_895551_+	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|165aa|down_8|NZ_CP040998.1_895949_896444_+	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|206aa|down_9|NZ_CP040998.1_896598_897216_+	COG1279, COG1279, Lysine efflux permease [General function prediction only]
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	4	934027-934112	3	CRISPRCasFinder	no	cas3	cas3,DinG,DEDDh,WYL,csa3	Unclear	AAAGTCAGCTTACAATAATGTGCAAGTTGG	30	1	3	934057-934082|934057-934082|934057-934082	NZ_CP040998.1_579714-579689|NZ_CP040998.1_971090-971065|NZ_CP040998.1_971034-971009	NA	1	1	Unclear	cas3,DinG,DEDDh,WYL,csa3	NA,NA|36aa|down_9|NZ_CP040998.1_946951_947059_-	NA|254aa|up_9|NZ_CP040998.1_922069_922831_-	PRK00042, tpiA, triosephosphate isomerase; Provisional	NA|397aa|up_8|NZ_CP040998.1_922952_924143_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|337aa|up_7|NZ_CP040998.1_924281_925292_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|338aa|up_6|NZ_CP040998.1_925344_926358_-	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|210aa|up_5|NZ_CP040998.1_926999_927629_-	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|301aa|up_4|NZ_CP040998.1_928331_929234_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_3|NZ_CP040998.1_929476_930064_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_2|NZ_CP040998.1_930636_931581_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_1|NZ_CP040998.1_931690_932686_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_0|NZ_CP040998.1_932682_933594_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|down_0|NZ_CP040998.1_934473_935409_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|down_1|NZ_CP040998.1_935475_936915_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|down_2|NZ_CP040998.1_936922_937408_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|down_3|NZ_CP040998.1_937415_938255_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|down_4|NZ_CP040998.1_938260_939193_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_5|NZ_CP040998.1_939799_942646_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_6|NZ_CP040998.1_942653_944639_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_7|NZ_CP040998.1_944907_945144_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|280aa|down_8|NZ_CP040998.1_945964_946804_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_9|NZ_CP040998.1_946951_947059_-	NA
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	5	939430-939510	4	CRISPRCasFinder	no	cas3	cas3,DinG,DEDDh,WYL,csa3	Unclear	AGTTGGCGGGGCCCCAACATAAAGAA	26	1	8	939456-939484|939456-939484|939456-939484|939456-939484|939456-939484|939456-939484|939456-939484|939456-939484	NZ_CP040998.1_1379830-1379802|NZ_CP040998.1_2680393-2680365|NZ_CP040998.1_2013475-2013447|NZ_CP040998.1_103449-103477|NZ_CP040998.1_778244-778272|NZ_CP040998.1_890880-890908|NZ_CP040998.1_2205156-2205184|NZ_CP040998.1_2512644-2512672	NA	1	1	Unclear	cas3,DinG,DEDDh,WYL,csa3	NA,NA|36aa|down_4|NZ_CP040998.1_946951_947059_-,NA|35aa|down_6|NZ_CP040998.1_948491_948596_-	NA|301aa|up_9|NZ_CP040998.1_928331_929234_+	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|196aa|up_8|NZ_CP040998.1_929476_930064_-	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|315aa|up_7|NZ_CP040998.1_930636_931581_-	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|332aa|up_6|NZ_CP040998.1_931690_932686_-	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|304aa|up_5|NZ_CP040998.1_932682_933594_-	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only]	NA|312aa|up_4|NZ_CP040998.1_934473_935409_-	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|480aa|up_3|NZ_CP040998.1_935475_936915_-	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|162aa|up_2|NZ_CP040998.1_936922_937408_-	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|280aa|up_1|NZ_CP040998.1_937415_938255_-	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|311aa|up_0|NZ_CP040998.1_938260_939193_-	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|949aa|down_0|NZ_CP040998.1_939799_942646_-	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|662aa|down_1|NZ_CP040998.1_942653_944639_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|79aa|down_2|NZ_CP040998.1_944907_945144_-	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|280aa|down_3|NZ_CP040998.1_945964_946804_-	COG3942, COG3942, Surface antigen [General function prediction only]	NA|36aa|down_4|NZ_CP040998.1_946951_947059_-	NA	NA|370aa|down_5|NZ_CP040998.1_947212_948323_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|35aa|down_6|NZ_CP040998.1_948491_948596_-	NA	NA|844aa|down_7|NZ_CP040998.1_948637_951169_-	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|191aa|down_8|NZ_CP040998.1_951582_952155_-	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|225aa|down_9|NZ_CP040998.1_952215_952890_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	6	1033364-1033462	5	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	CCCCTTTTAATTTATTAATTAGGGGCTCTT	30	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|100aa|up_5|NZ_CP040998.1_1029383_1029683_-,NA|230aa|up_2|NZ_CP040998.1_1030852_1031542_+,NA|39aa|down_2|NZ_CP040998.1_1035317_1035434_-	NA|228aa|up_9|NZ_CP040998.1_1026953_1027637_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|153aa|up_8|NZ_CP040998.1_1027639_1028098_+	PRK00124, PRK00124, YaiI/YqxD family protein	NA|189aa|up_7|NZ_CP040998.1_1028099_1028666_+	COG1611, COG1611, Predicted Rossmann fold nucleotide-binding protein [General function prediction only]	NA|181aa|up_6|NZ_CP040998.1_1028761_1029304_-	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain	NA|100aa|up_5|NZ_CP040998.1_1029383_1029683_-	NA	NA|132aa|up_4|NZ_CP040998.1_1029820_1030216_-	PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional	NA|148aa|up_3|NZ_CP040998.1_1030282_1030726_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|230aa|up_2|NZ_CP040998.1_1030852_1031542_+	NA	NA|163aa|up_1|NZ_CP040998.1_1031640_1032129_-	COG2839, COG2839, Uncharacterized protein conserved in bacteria [Function unknown]	NA|407aa|up_0|NZ_CP040998.1_1032125_1033346_-	cd17471, MFS_Set, Sugar efflux transporter (Set) family of the Major Facilitator Superfamily of transporters	NA|289aa|down_0|NZ_CP040998.1_1033546_1034413_-	COG0583, LysR, Transcriptional regulator [Transcription]	NA|215aa|down_1|NZ_CP040998.1_1034528_1035173_-	COG2306, COG2306, Predicted RNA-binding protein, associated with RNAses E/G family [General function prediction only]	NA|39aa|down_2|NZ_CP040998.1_1035317_1035434_-	NA	NA|158aa|down_3|NZ_CP040998.1_1035525_1035999_-	COG3542, COG3542, Uncharacterized conserved protein [Function unknown]	NA|239aa|down_4|NZ_CP040998.1_1035998_1036715_-	PRK12378, PRK12378, YebC/PmpR family DNA-binding transcriptional regulator	NA|120aa|down_5|NZ_CP040998.1_1036904_1037264_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|717aa|down_6|NZ_CP040998.1_1037409_1039560_-	smart00342, HTH_ARAC, helix_turn_helix, arabinose operon control protein	NA|215aa|down_7|NZ_CP040998.1_1040256_1040901_-	COG0670, COG0670, Integral membrane protein, interacts with FtsH [General function prediction only]	NA|266aa|down_8|NZ_CP040998.1_1041261_1042059_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|336aa|down_9|NZ_CP040998.1_1042646_1043654_-	pfam01384, PHO4, Phosphate transporter family
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	7	1096355-1096447	6	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|239aa|up_5|NZ_CP040998.1_1091222_1091939_-,NA|169aa|up_4|NZ_CP040998.1_1092100_1092607_-,NA|36aa|down_3|NZ_CP040998.1_1099855_1099963_-	NA|75aa|up_9|NZ_CP040998.1_1087344_1087569_+	pfam11148, DUF2922, Protein of unknown function (DUF2922)	NA|310aa|up_8|NZ_CP040998.1_1087763_1088693_+	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|125aa|up_7|NZ_CP040998.1_1089640_1090015_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|263aa|up_6|NZ_CP040998.1_1090265_1091054_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|239aa|up_5|NZ_CP040998.1_1091222_1091939_-	NA	NA|169aa|up_4|NZ_CP040998.1_1092100_1092607_-	NA	NA|267aa|up_3|NZ_CP040998.1_1092742_1093543_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|240aa|up_2|NZ_CP040998.1_1093526_1094246_-	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|317aa|up_1|NZ_CP040998.1_1094300_1095251_-	pfam01032, FecCD, FecCD transport family	NA|276aa|up_0|NZ_CP040998.1_1095398_1096226_-	cd01143, YvrC, Periplasmic binding protein YvrC	NA|212aa|down_0|NZ_CP040998.1_1096664_1097300_-	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|554aa|down_1|NZ_CP040998.1_1097688_1099350_-	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|128aa|down_2|NZ_CP040998.1_1099346_1099730_-	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|36aa|down_3|NZ_CP040998.1_1099855_1099963_-	NA	NA|337aa|down_4|NZ_CP040998.1_1100037_1101048_-	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|174aa|down_5|NZ_CP040998.1_1101546_1102068_-	pfam08741, YwhD, YwhD family	NA|432aa|down_6|NZ_CP040998.1_1102095_1103391_-	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|159aa|down_7|NZ_CP040998.1_1103430_1103907_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|179aa|down_8|NZ_CP040998.1_1104075_1104612_-	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|313aa|down_9|NZ_CP040998.1_1104822_1105761_-	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	8	1341251-1341352	7	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	CAAATTTAATACTCAATTCATATA	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|179aa|up_7|NZ_CP040998.1_1332869_1333406_+,NA|221aa|up_1|NZ_CP040998.1_1339497_1340160_+,NA|34aa|down_0|NZ_CP040998.1_1342024_1342126_-,NA|98aa|down_5|NZ_CP040998.1_1347113_1347407_+,NA|128aa|down_7|NZ_CP040998.1_1348360_1348744_+,NA|70aa|down_9|NZ_CP040998.1_1349568_1349778_+	NA|91aa|up_9|NZ_CP040998.1_1331101_1331374_+	COG2963, COG2963, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|235aa|up_8|NZ_CP040998.1_1331772_1332477_+	pfam02452, PemK_toxin, PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA|179aa|up_7|NZ_CP040998.1_1332869_1333406_+	NA	NA|514aa|up_6|NZ_CP040998.1_1333518_1335060_-	PRK00074, guaA, GMP synthase; Reviewed	NA|489aa|up_5|NZ_CP040998.1_1335084_1336551_-	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|423aa|up_4|NZ_CP040998.1_1336588_1337857_-	TIGR03173, pbuX, xanthine permease	NA|193aa|up_3|NZ_CP040998.1_1337856_1338435_-	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|136aa|up_2|NZ_CP040998.1_1338947_1339355_+	pfam11181, YflT, Heat induced stress protein YflT	NA|221aa|up_1|NZ_CP040998.1_1339497_1340160_+	NA	NA|319aa|up_0|NZ_CP040998.1_1340277_1341234_+	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|34aa|down_0|NZ_CP040998.1_1342024_1342126_-	NA	NA|463aa|down_1|NZ_CP040998.1_1342210_1343599_+	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|252aa|down_2|NZ_CP040998.1_1343679_1344435_-	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|190aa|down_3|NZ_CP040998.1_1344926_1345496_+	TIGR03137, AhpC, peroxiredoxin	NA|508aa|down_4|NZ_CP040998.1_1345511_1347035_+	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|98aa|down_5|NZ_CP040998.1_1347113_1347407_+	NA	NA|209aa|down_6|NZ_CP040998.1_1347479_1348106_+	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|128aa|down_7|NZ_CP040998.1_1348360_1348744_+	NA	NA|194aa|down_8|NZ_CP040998.1_1348809_1349391_-	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|70aa|down_9|NZ_CP040998.1_1349568_1349778_+	NA
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	9	1762877-1763050	1,8	PILER-CR,CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG,TTACAATAATGTGCAAGTTGGCGG	40,24	2	17	1762930-1762946|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015|1763000-1763015	NZ_CP040998.1_1462730-1462714|NZ_CP040998.1_283147-283162|NZ_CP040998.1_367172-367187|NZ_CP040998.1_371584-371569|NZ_CP040998.1_579684-579669|NZ_CP040998.1_680523-680538|NZ_CP040998.1_890620-890635|NZ_CP040998.1_1379934-1379919|NZ_CP040998.1_1928278-1928293|NZ_CP040998.1_2205110-2205125|NZ_CP040998.1_2512538-2512553|NZ_CP040998.1_2512596-2512611|NZ_CP040998.1_103401-103416|NZ_CP040998.1_325522-325537|NZ_CP040998.1_583764-583749|NZ_CP040998.1_971004-970989|NZ_CP040998.1_2115651-2115666	NA:NA	2,1	2	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|60aa|up_1|NZ_CP040998.1_1759836_1760016_+,NA	NA|205aa|up_9|NZ_CP040998.1_1753554_1754169_+	PRK13584, hisG, ATP phosphoribosyltransferase	NA|417aa|up_8|NZ_CP040998.1_1754161_1755412_+	PRK13770, PRK13770, histidinol dehydrogenase; Provisional	NA|338aa|up_7|NZ_CP040998.1_1755427_1756441_+	COG0079, HisC, Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]	NA|193aa|up_6|NZ_CP040998.1_1756409_1756988_+	cd07914, IGPD, Imidazoleglycerol-phosphate dehydratase	NA|193aa|up_5|NZ_CP040998.1_1756984_1757563_+	PRK13142, hisH, imidazole glycerol phosphate synthase subunit HisH; Provisional	NA|235aa|up_4|NZ_CP040998.1_1757555_1758260_+	PRK13587, PRK13587, 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional	NA|253aa|up_3|NZ_CP040998.1_1758256_1759015_+	PRK02083, PRK02083, imidazole glycerol phosphate synthase subunit HisF; Provisional	NA|211aa|up_2|NZ_CP040998.1_1759011_1759644_+	PRK02759, PRK02759, bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE	NA|60aa|up_1|NZ_CP040998.1_1759836_1760016_+	NA	NA|681aa|up_0|NZ_CP040998.1_1760736_1762779_+	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only]	NA|351aa|down_0|NZ_CP040998.1_1763225_1764278_-	COG3936, COG3936, Protein involved in polysaccharide intercellular adhesin (PIA) synthesis/biofilm formation [Carbohydrate transport and metabolism]	NA|291aa|down_1|NZ_CP040998.1_1764264_1765137_-	TIGR03933, Poly-beta-16-N-acetyl-D-glucosamine_N-deacetylase, intercellular adhesin biosynthesis polysaccharide N-deacetylase	NA|102aa|down_2|NZ_CP040998.1_1765133_1765439_-	TIGR03932, IcaD_partial, intracellular adhesion protein D	NA|413aa|down_3|NZ_CP040998.1_1765402_1766641_-	TIGR03937, Poly-beta-16-N-acetyl-D-glucosamine_synthase, poly-beta-1,6 N-acetyl-D-glucosamine synthase	NA|187aa|down_4|NZ_CP040998.1_1766804_1767365_+	pfam18665, TetR_C_37, Tetracyclin repressor-like, C-terminal domain	NA|221aa|down_5|NZ_CP040998.1_1768213_1768876_+	COG3944, COG3944, Capsular polysaccharide biosynthesis protein [Cell envelope biogenesis, outer membrane]	NA|231aa|down_6|NZ_CP040998.1_1768892_1769585_+	cd05387, BY-kinase, bacterial tyrosine-kinase	NA|256aa|down_7|NZ_CP040998.1_1769581_1770349_+	COG4464, CapC, Capsular polysaccharide biosynthesis protein [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]	NA|167aa|down_8|NZ_CP040998.1_1770583_1771084_+	pfam13673, Acetyltransf_10, Acetyltransferase (GNAT) domain	NA|159aa|down_9|NZ_CP040998.1_1771086_1771563_+	PRK05528, PRK05528, peptide-methionine (S)-S-oxide reductase
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	10	2205161-2205251	9	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	AAAAGAAATTCTACAGACAATGCAAGTTGGGGA	33	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA,NA|57aa|down_0|NZ_CP040998.1_2205266_2205437_-,NA|84aa|down_5|NZ_CP040998.1_2208578_2208830_-,NA|106aa|down_8|NZ_CP040998.1_2213954_2214272_-,NA|55aa|down_9|NZ_CP040998.1_2214516_2214681_-	NA|202aa|up_9|NZ_CP040998.1_2197964_2198570_+	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]	NA|335aa|up_8|NZ_CP040998.1_2198739_2199744_+	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|169aa|up_7|NZ_CP040998.1_2199774_2200281_+	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|165aa|up_6|NZ_CP040998.1_2200282_2200777_-	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|420aa|up_5|NZ_CP040998.1_2200839_2202099_+	cd00887, MoeA, MoeA family	NA|162aa|up_4|NZ_CP040998.1_2202095_2202581_+	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|149aa|up_3|NZ_CP040998.1_2202594_2203041_+	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|78aa|up_2|NZ_CP040998.1_2203046_2203280_+	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|200aa|up_1|NZ_CP040998.1_2203286_2203886_+	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|341aa|up_0|NZ_CP040998.1_2203905_2204928_+	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|57aa|down_0|NZ_CP040998.1_2205266_2205437_-	NA	NA|117aa|down_1|NZ_CP040998.1_2205562_2205913_+	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|404aa|down_2|NZ_CP040998.1_2206016_2207228_-	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|147aa|down_3|NZ_CP040998.1_2207220_2207661_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|255aa|down_4|NZ_CP040998.1_2207822_2208587_+	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|84aa|down_5|NZ_CP040998.1_2208578_2208830_-	NA	NA|422aa|down_6|NZ_CP040998.1_2209218_2210484_+	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|1056aa|down_7|NZ_CP040998.1_2210600_2213768_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|106aa|down_8|NZ_CP040998.1_2213954_2214272_-	NA	NA|55aa|down_9|NZ_CP040998.1_2214516_2214681_-	NA
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	11	2329222-2329372	10	CRISPRCasFinder	no	csa3	cas3,DinG,DEDDh,WYL,csa3	Type I-A	TGCATAAGAGCCCCTAACAACTAAAGTT	28	0	0	NA	NA	NA	2	2	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|31aa|up_2|NZ_CP040998.1_2326581_2326674_-,NA|35aa|up_0|NZ_CP040998.1_2328785_2328890_+,NA|364aa|down_0|NZ_CP040998.1_2329389_2330481_-,NA|77aa|down_5|NZ_CP040998.1_2334269_2334500_+	NA|369aa|up_9|NZ_CP040998.1_2316194_2317301_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|145aa|up_8|NZ_CP040998.1_2317300_2317735_-	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|711aa|up_7|NZ_CP040998.1_2317746_2319879_-	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|513aa|up_6|NZ_CP040998.1_2319913_2321452_-	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|602aa|up_5|NZ_CP040998.1_2322132_2323938_+	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|261aa|up_4|NZ_CP040998.1_2324169_2324952_+	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|286aa|up_3|NZ_CP040998.1_2325019_2325877_+	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|31aa|up_2|NZ_CP040998.1_2326581_2326674_-	NA	NA|379aa|up_1|NZ_CP040998.1_2326962_2328099_+	pfam02037, SAP, SAP domain	NA|35aa|up_0|NZ_CP040998.1_2328785_2328890_+	NA	NA|364aa|down_0|NZ_CP040998.1_2329389_2330481_-	NA	NA|327aa|down_1|NZ_CP040998.1_2330746_2331727_-	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	csa3|107aa|down_2|NZ_CP040998.1_2331728_2332049_-	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|222aa|down_3|NZ_CP040998.1_2332200_2332866_+	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	NA|313aa|down_4|NZ_CP040998.1_2333300_2334239_+	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|77aa|down_5|NZ_CP040998.1_2334269_2334500_+	NA	NA|458aa|down_6|NZ_CP040998.1_2335171_2336545_+	pfam01878, EVE, EVE domain	NA|138aa|down_7|NZ_CP040998.1_2337002_2337416_+	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|148aa|down_8|NZ_CP040998.1_2337615_2338059_+	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|237aa|down_9|NZ_CP040998.1_2338179_2338890_-	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	12	2523420-2523498	11	CRISPRCasFinder	no	DEDDh	cas3,DinG,DEDDh,WYL,csa3	Unclear	TGCAGGTTGGCGGGGCCCCAACA	23	1	5	2523443-2523475|2523443-2523475|2523443-2523475|2523443-2523475|2523443-2523475	NZ_CP040998.1_371601-371569|NZ_CP040998.1_103384-103416|NZ_CP040998.1_934014-934046|NZ_CP040998.1_1928261-1928293|NZ_CP040998.1_283130-283162	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA|31aa|up_6|NZ_CP040998.1_2518026_2518119_+,NA|37aa|up_2|NZ_CP040998.1_2521124_2521235_+,NA|138aa|up_1|NZ_CP040998.1_2521263_2521677_+,NA|129aa|down_1|NZ_CP040998.1_2524655_2525042_+,NA|92aa|down_6|NZ_CP040998.1_2529027_2529303_-	NA|177aa|up_9|NZ_CP040998.1_2515342_2515873_+	pfam11667, DUF3267, Putative zincin peptidase	NA|357aa|up_8|NZ_CP040998.1_2516119_2517190_+	PRK02406, PRK02406, DNA polymerase IV; Validated	DEDDh|185aa|up_7|NZ_CP040998.1_2517257_2517812_-	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|31aa|up_6|NZ_CP040998.1_2518026_2518119_+	NA	NA|167aa|up_5|NZ_CP040998.1_2518200_2518701_-	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|438aa|up_4|NZ_CP040998.1_2518992_2520306_+	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|244aa|up_3|NZ_CP040998.1_2520307_2521039_+	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|37aa|up_2|NZ_CP040998.1_2521124_2521235_+	NA	NA|138aa|up_1|NZ_CP040998.1_2521263_2521677_+	NA	NA|329aa|up_0|NZ_CP040998.1_2522166_2523153_-	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|253aa|down_0|NZ_CP040998.1_2523680_2524439_+	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|129aa|down_1|NZ_CP040998.1_2524655_2525042_+	NA	NA|234aa|down_2|NZ_CP040998.1_2525056_2525758_+	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|348aa|down_3|NZ_CP040998.1_2525754_2526798_+	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|210aa|down_4|NZ_CP040998.1_2526787_2527417_+	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|406aa|down_5|NZ_CP040998.1_2527532_2528750_-	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|92aa|down_6|NZ_CP040998.1_2529027_2529303_-	NA	NA|155aa|down_7|NZ_CP040998.1_2529309_2529774_-	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|67aa|down_8|NZ_CP040998.1_2529920_2530121_+	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|419aa|down_9|NZ_CP040998.1_2530123_2531380_+	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)
GCF_006364675.1_ASM636467v1	NZ_CP040998	Staphylococcus aureus strain FDAARGOS_773 chromosome, complete genome	13	2680074-2680297	12	CRISPRCasFinder	no		cas3,DinG,DEDDh,WYL,csa3	Orphan	CCAACTTGCACATTATTGAAAGCTGACTATTGGCCAGCTTCTGTGTTGGGGCCC	54	0	0	NA	NA	NA	1	1	Orphan	cas3,DinG,DEDDh,WYL,csa3	NA,NA	NA|188aa|up_9|NZ_CP040998.1_2662437_2663001_-	pfam06962, rRNA_methylase, Putative rRNA methylase	NA|318aa|up_8|NZ_CP040998.1_2662997_2663951_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|394aa|up_7|NZ_CP040998.1_2664060_2665242_+	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily	NA|805aa|up_6|NZ_CP040998.1_2665532_2667947_+	PRK00390, leuS, leucyl-tRNA synthetase; Validated	NA|104aa|up_5|NZ_CP040998.1_2667968_2668280_+	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein	NA|2187aa|up_4|NZ_CP040998.1_2668605_2675166_+	TIGR04263, cell_wall_surface_anchor_family_protein, SasC/Mrp/FmtB intercellular aggregation domain	NA|423aa|up_3|NZ_CP040998.1_2675282_2676551_-	pfam03486, HI0933_like, HI0933-like protein	NA|554aa|up_2|NZ_CP040998.1_2676957_2678619_+	cd13124, MATE_SpoVB_like, Stage V sporulation protein B, also known as Stage III sporulation protein F, and related proteins	NA|232aa|up_1|NZ_CP040998.1_2678615_2679311_+	COG1187, RsuA, 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases [Translation, ribosomal structure and biogenesis]	NA|141aa|up_0|NZ_CP040998.1_2679327_2679750_+	pfam12732, YtxH, YtxH-like protein	NA|470aa|down_0|NZ_CP040998.1_2680669_2682079_+	PRK07318, PRK07318, dipeptidase PepV; Reviewed	NA|283aa|down_1|NZ_CP040998.1_2682082_2682931_+	TIGR01121, D-alanine_aminotransferase, D-amino acid aminotransferase	NA|264aa|down_2|NZ_CP040998.1_2683480_2684272_+	COG0510, ycfN, Thiamine kinase and related kinases [Coenzyme transport and metabolism]	NA|215aa|down_3|NZ_CP040998.1_2684286_2684931_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|281aa|down_4|NZ_CP040998.1_2685400_2686243_+	cd07728, YtnP-like_MBL-fold, Bacillus subtilis YtnP and related proteins; MBL-fold metallo hydrolase domain	NA|104aa|down_5|NZ_CP040998.1_2686367_2686679_-	COG5584, COG5584, Predicted small secreted protein [Function unknown]	NA|359aa|down_6|NZ_CP040998.1_2686765_2687842_+	cd05656, M42_Frv, M42 Peptidase, endoglucanases	NA|104aa|down_7|NZ_CP040998.1_2687906_2688218_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|286aa|down_8|NZ_CP040998.1_2688317_2689175_+	PRK13668, PRK13668, hypothetical protein; Provisional	NA|199aa|down_9|NZ_CP040998.1_2689203_2689800_+	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed
