The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	16302	84206	2964112	transposase,integrase,terminase	Staphylococcus_phage(48.84%)	76	37283:37299	79292:79308
WP_023487103.1|16302_16494_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	78.3	7.0e-22
WP_001261460.1|16737_17034_+	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_000934799.1|17054_17558_+	single-stranded DNA-binding protein	NA	A0A1W6JPL9	Staphylococcus_phage	74.7	1.2e-60
WP_000897044.1|17609_17852_+	30S ribosomal protein S18	NA	NA	NA	NA	NA
WP_000400841.1|18083_18803_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	Q4ZE81	Staphylococcus_phage	29.8	3.7e-23
WP_140045509.1|18915_20130_-|integrase	tyrosine-type recombinase/integrase	integrase	Q4ZE80	Staphylococcus_phage	97.0	1.6e-220
WP_000668215.1|20393_21119_-	helix-turn-helix transcriptional regulator	NA	Q4ZE79	Staphylococcus_phage	28.1	3.1e-17
WP_001245562.1|21290_21503_+	helix-turn-helix transcriptional regulator	NA	Q4ZE78	Staphylococcus_phage	87.1	6.6e-29
WP_001138300.1|21503_21776_+	winged helix-turn-helix domain-containing protein	NA	Q4ZE77	Staphylococcus_phage	94.4	7.2e-44
WP_000784875.1|21787_21934_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001058486.1|21926_22136_+	hypothetical protein	NA	Q4ZE76	Staphylococcus_phage	94.2	1.7e-29
WP_001103945.1|22138_22462_+	DUF1474 family protein	NA	A0A1W6JQH0	Staphylococcus_phage	58.2	6.6e-20
WP_031765319.1|22526_23396_+	mobile element-associated protein	NA	A0A1W6JQL5	Staphylococcus_phage	98.6	2.4e-165
WP_031765320.1|23412_24870_+	virulence-associated protein E	NA	A0A1W6JQD6	Staphylococcus_phage	96.5	3.5e-278
WP_031765322.1|25170_25533_+	hypothetical protein	NA	A0A1W6JQD5	Staphylococcus_phage	94.2	6.0e-62
WP_000998179.1|25534_25819_+	hypothetical protein	NA	A0A1W6JQE4	Staphylococcus_phage	100.0	1.2e-49
WP_140045510.1|25815_26457_+	pathogenicity island protein	NA	Q4ZE67	Staphylococcus_phage	93.4	1.1e-111
WP_001190614.1|27018_27360_+	hypothetical protein	NA	Q4ZE66	Staphylococcus_phage	100.0	2.9e-58
WP_000214170.1|27390_28044_+	hypothetical protein	NA	Q4ZE82	Staphylococcus_phage	99.5	7.6e-116
WP_001293071.1|28964_29534_+|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	98.4	4.6e-101
WP_000801977.1|29810_30779_+	Abi family protein	NA	A0A0H4U080	Erysipelothrix_phage	27.3	2.7e-24
WP_073392942.1|30920_31358_+	DUF3102 domain-containing protein	NA	A0A2H4JAH5	uncultured_Caudovirales_phage	58.2	9.8e-27
WP_000813311.1|31475_31988_+	hypothetical protein	NA	Q4ZE83	Staphylococcus_phage	100.0	1.4e-69
WP_001822249.1|32974_33913_-	Abi family protein	NA	NA	NA	NA	NA
WP_001797636.1|33951_34263_-|integrase	tyrosine-type recombinase/integrase	integrase	Q4ZE80	Staphylococcus_phage	70.5	5.5e-24
WP_000237577.1|34340_34499_-|integrase	integrase	integrase	Q4ZE80	Staphylococcus_phage	66.7	6.7e-10
WP_000475326.1|34858_35470_+	toxin	NA	NA	NA	NA	NA
WP_000849177.1|35838_36207_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000769720.1|36387_36960_+	PepSY domain-containing protein	NA	NA	NA	NA	NA
WP_001055897.1|37097_37361_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
37283:37299	attL	TCTCATTTAATTGCTGT	NA	NA	NA	NA
WP_000466748.1|37660_37912_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_000211676.1|37950_38160_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000158374.1|38337_38919_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_000868248.1|38984_39368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000746687.1|39622_40249_-	NDxxF motif lipoprotein	NA	NA	NA	NA	NA
WP_001795623.1|40321_40615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000930486.1|40693_42217_-	alkyl hydroperoxide reductase subunit F	NA	A0A249XZT7	Enterococcus_phage	33.6	1.9e-40
WP_000052781.1|42232_42802_-	peroxiredoxin	NA	NA	NA	NA	NA
WP_001289311.1|43293_44049_+	NADPH-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000991007.1|44129_45518_-	L-cystine transporter	NA	NA	NA	NA	NA
WP_001789518.1|45602_45704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000956132.1|46494_47451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000394698.1|47568_48231_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000763768.1|48373_48781_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000421410.1|49293_49872_+	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000793009.1|49871_51140_+	purine permease	NA	NA	NA	NA	NA
WP_000264071.1|51177_52644_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.5	5.2e-96
WP_000424966.1|52668_54210_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	32.6	1.2e-23
WP_000237797.1|54277_55471_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	34.2	8.3e-44
WP_000633907.1|55497_55698_-	DUF3173 domain-containing protein	NA	NA	NA	NA	NA
WP_000845143.1|56195_56426_-	helix-turn-helix domain-containing protein	NA	A0A1S5SEX1	Streptococcus_phage	78.9	1.0e-27
WP_000675479.1|56422_56905_-	sigma-70 family RNA polymerase sigma factor	NA	A0A1S5SEW0	Streptococcus_phage	68.6	8.5e-48
WP_010924747.1|57033_57144_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001227350.1|57375_57729_+	helix-turn-helix transcriptional regulator	NA	A0A1S5SFA6	Streptococcus_phage	89.7	2.2e-53
WP_001803271.1|57786_57954_-	conjugal transfer protein	NA	D0R0F6	Streptococcus_phage	62.0	2.3e-13
WP_000691737.1|58072_59992_-	tetracycline resistance ribosomal protection protein Tet(M)	NA	A0A1S5SF82	Streptococcus_phage	97.2	0.0e+00
WP_011058339.1|60007_60094_-	tetracycline resistance determinant leader peptide	NA	NA	NA	NA	NA
WP_078377190.1|60368_61307_-	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	56.6	1.9e-83
WP_023487102.1|61314_62337_-	NLP/P60 family lipoprotein	NA	A0A1S5SEZ8	Streptococcus_phage	75.2	2.6e-131
WP_000192392.1|62333_64361_-	membrane protein	NA	A0A1S5SF30	Streptococcus_phage	65.5	2.3e-195
WP_000723887.1|66795_67191_-	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	72.6	5.9e-47
WP_000248477.1|69037_69676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000425404.1|69731_70232_-	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	63.0	1.7e-54
WP_000675717.1|70292_71072_-	abortive infection family protein	NA	NA	NA	NA	NA
WP_001009054.1|71113_71335_-	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	93.2	3.1e-29
WP_000055376.1|71331_71622_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000426689.1|71618_72803_-	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	68.1	6.3e-161
WP_001130244.1|72984_74388_-	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	66.5	2.2e-176
WP_000185761.1|74409_75183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001234191.1|75192_75570_-	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	76.4	9.6e-47
WP_000421279.1|75590_75905_-	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	77.7	1.2e-42
WP_000470931.1|77894_80084_-	AAA family ATPase	NA	NA	NA	NA	NA
79292:79308	attR	TCTCATTTAATTGCTGT	NA	NA	NA	NA
WP_000997693.1|80217_81408_-|transposase	IS256-like element ISLgar5 family transposase	transposase	NA	NA	NA	NA
WP_000551776.1|81901_82438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000041883.1|82830_83535_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	U5U4R0	Staphylococcus_phage	37.6	2.6e-29
WP_000159787.1|83933_84206_-|transposase	transposase	transposase	A0A0C5AJ30	Paenibacillus_phage	50.6	1.3e-13
>prophage 2
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	404981	412801	2964112		Hokovirus(16.67%)	10	NA	NA
WP_000244412.1|404981_406037_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	30.0	2.1e-14
WP_000149344.1|406036_406723_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_001037807.1|406697_407171_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001093553.1|407512_407953_-	DM13 domain-containing protein	NA	NA	NA	NA	NA
WP_000637687.1|408232_408817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023487088.1|408915_409629_-	7-carboxy-7-deazaguanine synthase QueE	NA	A0A1U9WRB6	Streptococcus_virus	44.0	3.8e-52
WP_000941336.1|409632_410052_-	6-carboxytetrahydropterin synthase QueD	NA	S4U060	uncultured_phage	28.7	6.3e-07
WP_000446724.1|410053_410722_-	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	57.5	9.6e-66
WP_000604514.1|411072_411666_+	aminodeoxychorismate/anthranilate synthase component II	NA	A0A0P0IKJ1	Acinetobacter_phage	42.9	4.4e-38
WP_001217785.1|411649_412801_+	anthranilate synthase component I family protein	NA	A0A0B5J984	Pandoravirus	35.7	1.6e-23
>prophage 3
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	424773	439616	2964112		uncultured_Caudovirales_phage(50.0%)	14	NA	NA
WP_000663030.1|424773_425832_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	26.7	7.9e-22
WP_000197271.1|426182_426725_+	5'-3'-deoxyribonucleotidase	NA	NA	NA	NA	NA
WP_000429014.1|427460_428378_-	lipid kinase	NA	A0A1V0SBJ0	Catovirus	22.0	3.7e-07
WP_001790641.1|428468_428570_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000193751.1|428647_430153_-	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	32.2	2.0e-58
WP_000930014.1|430493_430994_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	71.5	5.9e-52
WP_001068497.1|431013_431880_-	DMT family transporter	NA	NA	NA	NA	NA
WP_000692521.1|432680_433079_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.0	1.2e-52
WP_000855505.1|433041_435147_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.7	0.0e+00
WP_000562498.1|435264_436236_+	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.3	4.2e-171
WP_000499195.1|436749_436905_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000876318.1|436943_437915_+	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	78.9	4.3e-139
WP_001245577.1|437901_438858_+	iron chelate uptake ABC transporter family permease subunit	NA	A0A2H4J116	uncultured_Caudovirales_phage	57.8	1.2e-05
WP_000616842.1|438854_439616_+	ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	31.6	8.5e-18
>prophage 4
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	611762	666879	2964112	tRNA,transposase,protease,bacteriocin	Streptococcus_phage(28.57%)	55	NA	NA
WP_000448934.1|611762_612752_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000258003.1|613046_613442_+	transcriptional regulator Spx	NA	NA	NA	NA	NA
WP_001217722.1|613812_614532_+	adaptor protein MecA	NA	NA	NA	NA	NA
WP_000959287.1|614652_615639_+	competence protein CoiA	NA	NA	NA	NA	NA
WP_023487078.1|615686_617495_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	24.2	4.6e-46
WP_000896697.1|617954_618761_-	DsbA family protein	NA	NA	NA	NA	NA
WP_000214065.1|618783_619149_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000224622.1|619252_619846_-	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_001242102.1|620031_620379_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001077683.1|620395_621031_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_001270834.1|621047_621857_+	NAD kinase	NA	NA	NA	NA	NA
WP_000669939.1|621853_622708_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000062417.1|622728_624114_+	magnesium transporter	NA	NA	NA	NA	NA
WP_000395153.1|624123_625968_+	sodium:proton antiporter	NA	NA	NA	NA	NA
WP_023487077.1|626245_627016_+	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_000933105.1|627210_628296_-	AI-2E family transporter	NA	NA	NA	NA	NA
WP_000570699.1|628637_630206_+	alanine:cation symporter family protein	NA	NA	NA	NA	NA
WP_023487076.1|630347_631106_+	esterase family protein	NA	NA	NA	NA	NA
WP_000600392.1|631299_631809_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001795545.1|631921_633130_-	MFS transporter	NA	NA	NA	NA	NA
WP_000258650.1|633089_634265_-	diglucosyl diacylglycerol synthase	NA	NA	NA	NA	NA
WP_000340118.1|634697_636179_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA	NA
WP_001795833.1|636162_636423_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001049959.1|636422_637985_+	peptide chain release factor 3	NA	A0A1S5SF82	Streptococcus_phage	28.2	4.9e-36
WP_000928413.1|638286_639090_+	TerC family protein	NA	S5MAL1	Bacillus_phage	40.5	1.6e-30
WP_000455278.1|639308_641633_+|protease	serine protease	protease	W5SAB9	Pithovirus	27.4	2.8e-11
WP_000021864.1|641649_643008_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_000414177.1|643146_644658_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA	NA
WP_000287265.1|645144_645714_-	competence protein ComK	NA	NA	NA	NA	NA
WP_000876826.1|645923_646142_+	IDEAL domain-containing protein	NA	NA	NA	NA	NA
WP_000668820.1|646222_647209_-	lipoate--protein ligase	NA	NA	NA	NA	NA
WP_000214898.1|647407_647584_+	YkvS family protein	NA	NA	NA	NA	NA
WP_001033867.1|647598_648201_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_001790623.1|649117_649219_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078061421.1|649228_649501_+|bacteriocin	lactococcin 972 family bacteriocin	bacteriocin	NA	NA	NA	NA
WP_000870806.1|649544_651509_+|bacteriocin	bacteriocin-associated integral membrane family protein	bacteriocin	NA	NA	NA	NA
WP_000668623.1|651511_651832_+	YxeA family protein	NA	NA	NA	NA	NA
WP_000571178.1|651828_652470_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.7	2.2e-19
WP_001795544.1|652557_652848_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000410721.1|653126_653336_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|653362_654535_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_023487074.1|654760_656242_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_000766009.1|656330_656687_-	DoxX family protein	NA	NA	NA	NA	NA
WP_001081351.1|657163_658123_+	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001790177.1|658168_658300_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001788574.1|658363_658654_-	TM2 domain-containing protein	NA	A0A060AN66	Enterococcus_phage	38.0	7.5e-07
WP_000620953.1|658743_659295_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000070966.1|659346_660285_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_001791731.1|660435_660540_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001804449.1|660616_661828_+	isochorismate synthase	NA	NA	NA	NA	NA
WP_000526687.1|661814_663488_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA	NA
WP_000150195.1|663474_664278_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA	NA
WP_000184947.1|664270_665092_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA	NA
WP_000284457.1|665330_665660_-	staphostatin B	NA	NA	NA	NA	NA
WP_001088780.1|665697_666879_-|protease	cysteine protease staphopain B	protease	NA	NA	NA	NA
>prophage 5
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	686866	695339	2964112		Synechococcus_phage(33.33%)	9	NA	NA
WP_000861572.1|686866_687349_+	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.7	6.2e-22
WP_001010412.1|687335_688460_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_000174053.1|688463_689168_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	42.1	7.3e-48
WP_000848350.1|689167_689431_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_000666799.1|689432_690104_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_000032727.1|690096_692286_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	39.7	1.0e-140
WP_000483713.1|692264_693749_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.7	3.2e-45
WP_000030812.1|693741_694770_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	41.4	1.3e-61
WP_000238664.1|694772_695339_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	40.1	6.1e-29
>prophage 6
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	746985	829386	2964112	head,capsid,portal,tRNA,holin,tail,terminase,plate,transposase	Staphylococcus_phage(77.33%)	109	NA	NA
WP_000401377.1|746985_747468_+	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	46.2	2.6e-28
WP_000843611.1|747529_748669_-	nucleotidyltransferase	NA	NA	NA	NA	NA
WP_000872158.1|748795_749353_+	DUF177 domain-containing protein	NA	NA	NA	NA	NA
WP_000290472.1|749432_749606_+	50S ribosomal protein L32	NA	NA	NA	NA	NA
WP_023487067.1|749722_751108_-	recombinase family protein	NA	I1W625	Staphylococcus_phage	99.8	7.2e-265
WP_000392109.1|751314_751995_-	hypothetical protein	NA	A0A2H4PQQ5	Staphylococcus_phage	100.0	5.1e-123
WP_023487066.1|752026_752491_-	toxin-antitoxin system toxin component	NA	A0A0N9BAX8	Staphylococcus_phage	98.7	1.6e-83
WP_000333630.1|752503_752818_-	helix-turn-helix transcriptional regulator	NA	A0A0N9BAW4	Staphylococcus_phage	100.0	9.8e-53
WP_001121027.1|752969_753206_+	helix-turn-helix transcriptional regulator	NA	A0A2I6PD81	Staphylococcus_phage	100.0	1.5e-37
WP_001148544.1|753219_753996_+	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	100.0	1.1e-140
WP_023487065.1|754021_754465_+	hypothetical protein	NA	W5R971	Staphylococcus_phage	99.3	4.4e-75
WP_000939498.1|754479_754623_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|754612_754822_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_000933363.1|755261_755447_+	helix-turn-helix transcriptional regulator	NA	S4SUN2	Staphylococcus_phage	100.0	1.7e-25
WP_023487064.1|755448_756201_+	phage antirepressor protein	NA	A0A1X9H0A0	Staphylococcus_phage	99.6	4.3e-139
WP_000395455.1|756367_756598_-	hypothetical protein	NA	C8CGY3	Staphylococcus_phage	100.0	2.3e-35
WP_000066026.1|756777_756939_+	DUF1270 family protein	NA	C8CGY5	Staphylococcus_phage	100.0	2.5e-20
WP_000291076.1|757032_757293_+	DUF1108 family protein	NA	Q4ZDR5	Staphylococcus_virus	98.8	5.8e-43
WP_000815403.1|757302_757524_+	DUF2483 domain-containing protein	NA	A0A1X9H047	Staphylococcus_phage	100.0	1.2e-33
WP_000139720.1|757516_758140_+	DUF1071 domain-containing protein	NA	A0A2H4PQQ6	Staphylococcus_phage	100.0	1.4e-114
WP_000934384.1|758139_758565_+	single-stranded DNA-binding protein	NA	B7T0A5	Staphylococcus_virus	88.7	1.6e-58
WP_001004506.1|758575_759127_+	HNH endonuclease	NA	A0A2H4PQR4	Staphylococcus_phage	100.0	1.6e-106
WP_015445893.1|759127_759802_+	hypothetical protein	NA	Q4ZCW9	Staphylococcus_virus	97.8	2.0e-127
WP_001037657.1|759794_760550_+	DnaD domain protein	NA	C8CGZ1	Staphylococcus_phage	100.0	3.8e-143
WP_001132243.1|760549_760906_+	hypothetical protein	NA	M9NS37	Staphylococcus_phage	100.0	8.2e-64
WP_023180135.1|760902_762144_+	AAA family ATPase	NA	A9CR70	Staphylococcus_phage	99.8	3.3e-229
WP_001024405.1|762140_762356_+	hypothetical protein	NA	Q4ZBU5	Staphylococcus_virus	100.0	4.8e-35
WP_001123684.1|762359_762581_+	DUF3269 family protein	NA	Q4ZBL4	Staphylococcus_phage	100.0	1.7e-35
WP_020808008.1|762590_762998_+	RusA family crossover junction endodeoxyribonuclease	NA	D2JGK8	Staphylococcus_phage	99.3	6.5e-73
WP_001187230.1|762997_763183_+	DUF3113 family protein	NA	A0A0N9BBI1	Staphylococcus_phage	100.0	1.9e-27
WP_111023892.1|763218_763269_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000022735.1|763268_763523_+	DUF3310 domain-containing protein	NA	D2JGL1	Staphylococcus_phage	100.0	1.3e-42
WP_012068339.1|763522_763771_+	hypothetical protein	NA	Q4ZBK9	Staphylococcus_phage	100.0	1.2e-42
WP_000695762.1|763783_764185_+	hypothetical protein	NA	Q4ZAC1	Staphylococcus_virus	100.0	1.1e-69
WP_000979209.1|764181_764529_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_000144710.1|764525_764834_+	hypothetical protein	NA	Q4ZD83	Staphylococcus_virus	100.0	6.2e-52
WP_001614814.1|764826_765081_+	DUF1024 family protein	NA	A1KX83	Staphylococcus_virus	96.4	3.6e-37
WP_075344739.1|765043_765238_+	hypothetical protein	NA	Q4ZBK4	Staphylococcus_phage	100.0	6.5e-23
WP_023487063.1|765230_765767_+	phage-like protein	NA	A0A0K1LKF0	Staphylococcus_phage	98.9	3.0e-94
WP_001209216.1|765803_765977_+	hypothetical protein	NA	A0A1W6JQ45	Staphylococcus_phage	100.0	4.7e-25
WP_000195761.1|765993_766230_+	DUF1381 domain-containing protein	NA	M1T303	Staphylococcus_phage	100.0	9.6e-37
WP_000483477.1|766254_766491_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_047216536.1|766483_766657_+	transcriptional regulator	NA	A0A0H3U4U1	Staphylococcus_phage	98.2	4.9e-22
WP_000286968.1|766657_767059_+	hypothetical protein	NA	A0A2H4PQK5	Staphylococcus_phage	100.0	5.6e-69
WP_000594088.1|767411_767906_+|terminase	terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	100.0	3.4e-84
WP_001037577.1|767898_769122_+|terminase	PBSX family phage terminase large subunit	terminase	A0A0N9BAX9	Staphylococcus_phage	99.5	6.4e-241
WP_023487061.1|769118_770543_+|portal	phage portal protein	portal	A0A0E3T9I6	Staphylococcus_phage	97.7	7.4e-265
WP_000184130.1|770511_771465_+	hypothetical protein	NA	A0A0N7E0U6	Staphylococcus_phage	99.1	2.5e-176
WP_033841232.1|771466_771667_+	hypothetical protein	NA	A0A0N9BB04	Staphylococcus_phage	97.1	1.4e-25
WP_001019224.1|771769_772354_+	DUF4355 domain-containing protein	NA	A0A2H4JDY6	uncultured_Caudovirales_phage	97.4	2.6e-75
WP_000235168.1|772370_773285_+|capsid	phage major capsid protein	capsid	A0A0H3U2U7	Staphylococcus_phage	100.0	1.2e-170
WP_023487059.1|773445_773796_+|head	head completion protein	head	A0A0H3U2R5	Staphylococcus_phage	99.1	5.4e-60
WP_000483041.1|773807_774143_+|head	phage head closure protein	head	A0A0E3TAH8	Staphylococcus_phage	100.0	8.8e-60
WP_001151323.1|774129_774537_+	HK97 gp10 family phage protein	NA	A0A0E3T8J0	Staphylococcus_phage	100.0	3.4e-74
WP_000270190.1|774549_774975_+	DUF3168 domain-containing protein	NA	A0A0E3XBP2	Staphylococcus_phage	100.0	1.2e-74
WP_000057582.1|774975_775533_+|tail	tail protein	tail	Q4ZBQ8	Staphylococcus_phage	100.0	8.2e-103
WP_000134337.1|775599_776106_+	hypothetical protein	NA	Q4ZBQ7	Staphylococcus_phage	100.0	2.7e-92
WP_000880587.1|776150_776435_+	hypothetical protein	NA	A0A0N7E0V9	Staphylococcus_phage	100.0	8.8e-45
WP_023487058.1|776438_779324_+	phage tape measure protein	NA	A0A2H4JGV1	uncultured_Caudovirales_phage	91.9	1.1e-296
WP_140045513.1|779338_780280_+|tail	phage tail protein	tail	A0A2H4JFG3	uncultured_Caudovirales_phage	98.7	1.4e-179
WP_015984523.1|780290_782177_+	hypothetical protein	NA	A1KXA8	Staphylococcus_virus	100.0	0.0e+00
WP_023487057.1|782189_784088_+	hypothetical protein	NA	A0A0H3U448	Staphylococcus_phage	98.3	0.0e+00
WP_023487056.1|784087_785911_+|plate	BppU family phage baseplate upper protein	plate	M9NUJ5	Staphylococcus_phage	97.7	1.8e-292
WP_000705893.1|785910_786288_+	DUF2977 domain-containing protein	NA	Q8LTH7	Staphylococcus_phage	100.0	7.3e-55
WP_001790193.1|786291_786465_+	XkdX family protein	NA	Q8LTH6	Staphylococcus_phage	100.0	1.7e-27
WP_023487055.1|786505_786805_+	DUF2951 domain-containing protein	NA	Q4ZBP8	Staphylococcus_phage	99.0	2.2e-46
WP_023487054.1|786941_788816_+	CHAP domain-containing protein	NA	Q4ZBP7	Staphylococcus_phage	99.8	0.0e+00
WP_023487053.1|788828_790067_+|plate	BppU family phage baseplate upper protein	plate	E0Y3M8	Staphylococcus_virus	99.8	1.3e-209
WP_000398873.1|790071_790467_+	hypothetical protein	NA	Q4ZDC6	Staphylococcus_virus	99.2	2.1e-68
WP_000354132.1|790522_790960_+|holin	phage holin	holin	A0A2H4PQP0	Staphylococcus_phage	100.0	4.1e-73
WP_001148136.1|790940_792386_+	CHAP domain-containing protein	NA	Q08JW9	Staphylococcus_phage	99.8	1.8e-295
WP_000344116.1|793051_793363_+	DUF3467 domain-containing protein	NA	A0A2H4PQQ9	Staphylococcus_phage	100.0	4.1e-51
WP_001251276.1|793349_793733_+	hypothetical protein	NA	A0A2H4PQP6	Staphylococcus_phage	99.2	6.1e-65
WP_001041586.1|793916_795854_-	heme uptake protein IsdB	NA	NA	NA	NA	NA
WP_000160859.1|796056_797109_-	LPXTG-anchored heme-scavenging protein IsdA	NA	NA	NA	NA	NA
WP_000789821.1|797317_798001_+	heme uptake protein IsdC	NA	NA	NA	NA	NA
WP_001246698.1|798000_799077_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001220199.1|799073_799952_+	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA	NA
WP_001548422.1|799961_800930_+	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_001242429.1|800991_801726_+	class B sortase	NA	NA	NA	NA	NA
WP_000670950.1|801744_802068_+	staphylobilin-forming heme oxygenase IsdG	NA	NA	NA	NA	NA
WP_001788617.1|802104_802212_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000435374.1|802451_803192_+	RNA methyltransferase	NA	NA	NA	NA	NA
WP_000003559.1|803572_804631_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.5	1.9e-31
WP_023487052.1|804630_807033_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_001284258.1|807203_808142_-	ribonuclease HIII	NA	NA	NA	NA	NA
WP_000195429.1|808647_809820_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_140045514.1|809822_810110_+	cell division protein ZapA	NA	NA	NA	NA	NA
WP_000234068.1|810110_810632_+	CvpA family protein	NA	NA	NA	NA	NA
WP_000161942.1|810704_812417_+	DNA polymerase/3'-5' exonuclease PolX	NA	A0A2H4UV14	Bodo_saltans_virus	24.0	8.9e-15
WP_001249285.1|812426_814775_+	endonuclease MutS2	NA	F2QAF8	Phaeocystis_pouchetii_virus	25.3	1.1e-15
WP_001018928.1|814947_815262_+	thioredoxin	NA	A0A1X9I9P5	Staphylococcus_phage	46.6	6.6e-25
WP_001788625.1|815324_815420_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000390529.1|815585_817367_+	excinuclease ABC subunit UvrC	NA	NA	NA	NA	NA
WP_000079317.1|817690_818305_+	succinate dehydrogenase cytochrome B558	NA	NA	NA	NA	NA
WP_000818278.1|818356_820123_+	succinate dehydrogenase flavoprotein subunit	NA	NA	NA	NA	NA
WP_000139712.1|820122_820938_+	succinate dehydrogenase iron-sulfur subunit	NA	NA	NA	NA	NA
WP_001039659.1|821173_821974_+	glutamate racemase	NA	NA	NA	NA	NA
WP_000659317.1|821985_822573_+	XTP/dITP diphosphatase	NA	NA	NA	NA	NA
WP_000049489.1|822565_823069_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_001791787.1|823196_823364_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000739209.1|823557_823887_+	complement convertase inhibitor Ecb	NA	NA	NA	NA	NA
WP_001791789.1|824203_824296_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000739563.1|824255_824657_-	formyl peptide receptor-like 1 inhibitory protein	NA	NA	NA	NA	NA
WP_000791587.1|826093_826591_+	fibrinogen-binding protein	NA	NA	NA	NA	NA
WP_000669537.1|826744_827095_+	complement inhibitor SCIN-B	NA	NA	NA	NA	NA
WP_000529170.1|827411_827654_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001032814.1|827916_828102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|828213_829386_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
>prophage 7
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	1299980	1308292	2964112	tRNA	Staphylococcus_phage(16.67%)	7	NA	NA
WP_001213908.1|1299980_1300766_-	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.3	8.0e-19
WP_000924214.1|1300891_1301782_-	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	33.1	2.0e-26
WP_001062180.1|1301791_1303138_-	DEAD/DEAH box helicase	NA	A0A1V0SIR5	Klosneuvirus	33.7	5.3e-55
WP_000683931.1|1303251_1304352_-	Nif3-like dinuclear metal center hexameric protein	NA	A0A1S5V250	Saudi_moumouvirus	29.6	5.2e-08
WP_000624584.1|1304354_1305032_-|tRNA	tRNA (adenine-N(1))-methyltransferase	tRNA	NA	NA	NA	NA
WP_001283055.1|1305162_1306269_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	38.1	1.1e-37
WP_023487017.1|1306492_1308292_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	36.0	2.7e-54
>prophage 8
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	1355923	1426895	2964112	tRNA,protease,transposase,integrase	Staphylococcus_phage(20.83%)	69	1380351:1380410	1419452:1420775
WP_000734064.1|1355923_1358554_-|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	34.4	3.2e-64
WP_001283311.1|1358896_1361374_-	ATP-dependent RecD-like DNA helicase	NA	A0A0K2FLP8	Brevibacillus_phage	29.0	1.1e-66
WP_000567028.1|1361375_1362044_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_000066097.1|1362505_1363624_-|tRNA	tRNA 2-thiouridine(34) synthase MnmA	tRNA	NA	NA	NA	NA
WP_000409167.1|1363624_1364767_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	29.3	8.3e-33
WP_000985886.1|1365078_1366092_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000009238.1|1366328_1366475_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000752913.1|1366514_1366697_-	CsbD family protein	NA	NA	NA	NA	NA
WP_000704122.1|1366796_1367219_-	Rrf2 family transcriptional regulator	NA	NA	NA	NA	NA
WP_000102735.1|1367303_1368578_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	50.7	1.8e-105
WP_000682646.1|1368738_1369512_-|tRNA	tRNA threonylcarbamoyladenosine dehydratase	tRNA	NA	NA	NA	NA
WP_001790559.1|1369511_1369640_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000044799.1|1369972_1371739_-|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L0E9	Tupanvirus	27.3	1.3e-16
WP_000590826.1|1371754_1373017_-|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_000717800.1|1373477_1374353_-	cell wall amidase	NA	A0A0N9SGH1	Paenibacillus_phage	33.7	4.7e-12
WP_000869983.1|1374349_1374802_-|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_001058583.1|1374813_1377003_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A2I2L310	Orpheovirus	37.7	6.9e-12
WP_000364542.1|1377430_1377949_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.5	5.6e-29
WP_023487007.1|1377970_1380244_-	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	28.8	1.2e-62
1380351:1380410	attL	GATAAAGTCCGTATAATTGTGTAAAAGTAAAAAGGCCATATAACAGTCCTTTTACGGTAC	NA	NA	NA	NA
WP_000195429.1|1380451_1381624_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000749795.1|1381778_1384058_-	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	35.8	1.8e-31
WP_001160682.1|1384332_1384593_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	35.3	8.2e-05
WP_001112045.1|1384611_1385751_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	44.7	5.4e-85
WP_001019172.1|1385773_1386799_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_001005767.1|1386800_1387805_-	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	1.7e-05
WP_000271547.1|1387836_1388439_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_000368902.1|1388452_1388908_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_000496102.1|1388920_1390213_-	GTPase ObgE	NA	NA	NA	NA	NA
WP_000916187.1|1390567_1390852_-	50S ribosomal protein L27	NA	NA	NA	NA	NA
WP_000633692.1|1390863_1391184_-|protease	ribosomal-processing cysteine protease Prp	protease	NA	NA	NA	NA
WP_000457386.1|1391189_1391498_-	50S ribosomal protein L21	NA	NA	NA	NA	NA
WP_001259925.1|1391664_1392195_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_000911041.1|1392194_1393037_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_000840602.1|1393236_1393356_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001236735.1|1393429_1393903_-	DUF4930 family protein	NA	NA	NA	NA	NA
WP_000025835.1|1394062_1394260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000171859.1|1394376_1394661_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001092058.1|1395109_1395772_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_001072201.1|1396305_1397037_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(A)	NA	E4ZFQ0	Streptococcus_phage	47.5	1.9e-51
WP_000067268.1|1397162_1397945_-	aminoglycoside nucleotidyltransferase ANT(9)-Ia	NA	NA	NA	NA	NA
WP_000361059.1|1398095_1398473_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_001557544.1|1398479_1400372_-|integrase	tyrosine-type recombinase/integrase	integrase	NA	NA	NA	NA
WP_000868132.1|1400368_1401454_-|transposase	transposase	transposase	A0A0A8WIF9	Clostridium_phage	28.3	4.5e-12
WP_000692869.1|1401572_1402127_-	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_000261115.1|1402123_1402831_-	prepilin peptidase	NA	NA	NA	NA	NA
WP_001108346.1|1403100_1404372_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_000425353.1|1404384_1407015_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	40.7	3.7e-153
WP_001001216.1|1407417_1407978_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_001240848.1|1408200_1409274_-	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_001788970.1|1409307_1409409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001270868.1|1409469_1410756_-	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA	NA
WP_000667126.1|1410803_1411778_-	porphobilinogen synthase	NA	NA	NA	NA	NA
WP_000805950.1|1411780_1412449_-	uroporphyrinogen-III synthase	NA	NA	NA	NA	NA
WP_001230228.1|1412470_1413397_-	hydroxymethylbilane synthase	NA	NA	NA	NA	NA
WP_001157329.1|1413438_1414254_-	cytochrome c assembly protein	NA	NA	NA	NA	NA
WP_000545451.1|1414275_1415622_-|tRNA	glutamyl-tRNA reductase	tRNA	NA	NA	NA	NA
WP_000867697.1|1415838_1416429_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_000472302.1|1416582_1417845_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	62.0	5.0e-140
WP_000127573.1|1417995_1419297_-	trigger factor	NA	NA	NA	NA	NA
WP_111187770.1|1419344_1419497_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000195429.1|1419552_1420725_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001028144.1|1420855_1422295_-	aminoglycoside O-phosphotransferase APH(2'')-Ia	NA	A0A1X9I6C2	Streptococcus_phage	100.0	3.8e-285
1419452:1420775	attR	GATAAAGTCCGTATAATTGTGTAAAAGTAAAAAGGCCATATAACAGTCCTTTTACGGTACAATGTTTTTAACGACAAAAACATACCCAGGAGGACTTTTACATGACCCAAGTACATTTTACACTGAAAAGCGAAGAGATTCAAAGCATTATTGAATATTCTGTAAAGGATGACGTTTCTAAAAATATTTTAACAACGGTATTTAATCAACTAATGGAAAATCAACGAACAGAATATATTCAAGCAAAAGAATATGAACGAACAGAAAACCGACAAAGTCAACGAAATGGCTATTATGAGCGCAGCTTTACGACACGTGTAGGCACGCTAGAATTAAAAGTACCCAGAACACGTGATGGCCATTTTTCACCCACAGTGTTTGAACGTTATCAACGAAACGAAAAAGCCCTCATGGCTTCAATGTTGGAAATGTATGTATCAGGCGTTTCAACTCGTAAAGTATCAAAAATTGTGGAAGAACTTTGTGGTAAATCCGTCTCTAAGTCCTTCGTTTCTAGCTTAACAGAACAGCTAGAACCTATGGTTAACGAGTGGCAGAATCGTTTATTATCAGAAAAAAATTATCCTTACTTAATGACCGATGTACTCTATATAAAAGTACGAGAAGAAAATCGAGTACTCTCAAAAAGCTGTCATATAGCGATTGGAATAACCAAAGATGGCGACCGTGAAATTATCGGCTTCATGATTCAAAGTGGCGAAAGCGAAGAGACCTGGACAACATTTTTTGAATACCTAAAAGAACGCGGTTTACAAGGTACGGAACTCGTTATTTCTGATGCGCACAAAGGATTAGTCTCTGCCATTAGAAAATCCTTCACCAACGTAAGTTGGCAAAGATGCCAAGTTCACTTCCTAAGAAATATCTTTACCACCATTCCTAAAAAAAATTCAAAATCTTTCAGAGAAGCTGTTAAAGGAATTTTTAAGTTCACAGATATTAACTTAGCGCGTGAGGCTAAAAATCGATTGATTCATGATTATATCGATCAACCAAAATATTCAAAAGCTTGCGCATCATTGGATGATGGATTCGAAGACGCCTTTCAATATACCGTACAAGGAAATTCCCACAATCGACTAAAGAGTACCAATCTAATTGAACGACTGAATCAAGAAGTACGCAGAAGAGAAAAGATTATTCGCATCTTCCCCAATCAAACATCAGCCAATCGCTTAATTGGAGCCGTTCTTATGGACCTACATGATGAATGGATTTATTCTTCAAGAAAATACATCAATTTTGATAAGTAGAAATGGTAAAAACATTGTATAGCATTTTACACAGGAGTCTGGACTTGACT	NA	NA	NA	NA
WP_000393259.1|1422295_1422688_-	GNAT family N-acetyltransferase	NA	A0A0N7GFH7	Staphylococcus_phage	100.0	6.9e-72
WP_000195429.1|1422747_1423920_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001280018.1|1424037_1424967_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000032657.1|1424985_1425594_-	NUDIX domain-containing protein	NA	A0A060AB76	Staphylococcus_phage	35.9	6.6e-21
WP_001138360.1|1425735_1426092_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001125540.1|1426138_1426339_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001791162.1|1426367_1426895_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	33.1	4.1e-11
>prophage 9
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	1531692	1644412	2964112	tRNA,protease,transposase	Staphylococcus_phage(90.62%)	107	NA	NA
WP_000836465.1|1531692_1532004_-	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	100.0	1.6e-52
WP_001108732.1|1532025_1534440_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	99.2	0.0e+00
WP_001025061.1|1534730_1535912_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	100.0	5.6e-218
WP_000526539.1|1536021_1536975_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	100.0	2.2e-79
WP_000764419.1|1536971_1537535_+	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	99.5	8.3e-103
WP_000757543.1|1537654_1538056_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000195429.1|1538378_1539551_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000266096.1|1540966_1541794_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_001790712.1|1541796_1541916_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001196354.1|1542027_1543029_+	proline dehydrogenase	NA	A0A2H4PQT6	Staphylococcus_phage	99.7	9.0e-185
WP_001008551.1|1543150_1543615_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	99.4	5.8e-70
WP_001159022.1|1543627_1544809_-	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	99.7	6.6e-227
WP_023487194.1|1544819_1545452_-	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	99.0	6.4e-112
WP_000384181.1|1545458_1546490_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	99.4	4.8e-197
WP_001261677.1|1546982_1548485_-	FAD-dependent oxidoreductase	NA	A0A2H4PQX2	Staphylococcus_phage	100.0	2.3e-30
WP_000221179.1|1549007_1549322_+	winged helix-turn-helix transcriptional regulator	NA	A0A2H4PQT4	Staphylococcus_phage	100.0	2.0e-53
WP_000989121.1|1549321_1550614_+	arsenite efflux transporter membrane subunit ArsB	NA	A0A2H4PQU3	Staphylococcus_phage	99.5	5.0e-228
WP_000163235.1|1550631_1551027_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	100.0	6.3e-73
WP_001032833.1|1551321_1552176_-	autolysin	NA	Q4ZCC7	Staphylococcus_virus	38.6	9.8e-39
WP_000384171.1|1552451_1552676_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000671052.1|1552874_1553345_+	RNA polymerase sigma factor SigS	NA	A0A2H4PQT5	Staphylococcus_phage	99.4	1.0e-82
WP_001153742.1|1553457_1553901_+	competence protein ComK	NA	NA	NA	NA	NA
WP_001030465.1|1553887_1554331_-	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	85.0	3.0e-55
WP_001168904.1|1554626_1555262_+|protease	CPBP family intramembrane metalloprotease SdpA	protease	NA	NA	NA	NA
WP_001096494.1|1555701_1556415_-	transaldolase	NA	M1PR54	Cyanophage	35.3	5.5e-19
WP_000091445.1|1556674_1556977_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001200542.1|1557232_1557598_+	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	100.0	3.6e-59
WP_000623471.1|1557594_1557948_+	CrcB family protein	NA	A0A2H4PQQ7	Staphylococcus_phage	99.1	1.0e-21
WP_000453320.1|1560030_1560864_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	98.6	9.6e-156
WP_000366154.1|1561075_1561984_-	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	98.7	3.2e-136
WP_000933822.1|1562108_1563302_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	99.7	1.9e-218
WP_000109906.1|1563672_1565265_+	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	100.0	0.0e+00
WP_000093392.1|1565400_1565886_-|transposase	IS200/IS605 family transposase	transposase	A0A1P8BMC0	Lactococcus_phage	35.4	4.9e-19
WP_002868962.1|1566260_1567007_-	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	98.4	7.1e-142
WP_000672014.1|1567011_1567485_-	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	98.1	4.7e-83
WP_000718107.1|1567550_1567808_+	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	100.0	7.2e-46
WP_000778523.1|1567804_1568806_-	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	97.6	4.8e-186
WP_000348360.1|1568810_1570289_-	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	97.0	2.0e-281
WP_011443643.1|1570447_1570903_-	DUF4909 domain-containing protein	NA	A0A2H4PQN7	Staphylococcus_phage	98.6	3.0e-79
WP_001795535.1|1571205_1571856_+	calcium-binding protein	NA	A0A2H4PQM8	Staphylococcus_phage	88.4	2.7e-44
WP_000070653.1|1571936_1572932_+	DUF4352 domain-containing protein	NA	A0A2H4PQN2	Staphylococcus_phage	96.4	7.1e-73
WP_000669046.1|1573007_1573634_+	hypothetical protein	NA	A0A2H4PQM7	Staphylococcus_phage	82.7	7.1e-79
WP_000627551.1|1573674_1574019_+	DUF3969 family protein	NA	A0A2H4PQN6	Staphylococcus_phage	92.0	6.3e-53
WP_000414205.1|1574116_1574668_+	hypothetical protein	NA	A0A2H4PQN4	Staphylococcus_phage	94.1	1.0e-20
WP_000494956.1|1574885_1575527_-	ImmA/IrrE family metallo-endopeptidase	NA	A0A2H4PQN8	Staphylococcus_phage	93.2	2.6e-76
WP_000809857.1|1575640_1575826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000375476.1|1575827_1576004_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000070811.1|1576014_1576398_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001549059.1|1577001_1577145_-|transposase	transposase	transposase	A0A2H4PQU1	Staphylococcus_phage	100.0	6.4e-20
WP_001791893.1|1577565_1577667_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002868972.1|1578014_1578374_-	DUF1433 domain-containing protein	NA	NA	NA	NA	NA
WP_000195429.1|1582818_1583991_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000072576.1|1585205_1586405_-	restriction endonuclease subunit S	NA	A0A2H4PQP5	Staphylococcus_phage	99.7	5.5e-229
WP_011443644.1|1586397_1588137_-	type I restriction-modification system subunit M	NA	A0A2H4PQP4	Staphylococcus_phage	99.4	4.4e-288
WP_001791797.1|1588117_1588252_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001038688.1|1588316_1589036_-|protease	serine protease SplF	protease	A0A2H4PQP1	Staphylococcus_phage	100.0	1.1e-131
WP_001038759.1|1589186_1589903_-|protease	serine protease SplE	protease	A0A2H4PQN5	Staphylococcus_phage	100.0	1.1e-131
WP_011447030.1|1590004_1590112_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038704.1|1590060_1590780_-|protease	serine protease SplD	protease	A0A2H4PQP9	Staphylococcus_phage	99.6	4.6e-130
WP_001038867.1|1590900_1591620_-|protease	serine protease SplC	protease	A0A2H4PQP7	Staphylococcus_phage	99.2	1.2e-130
WP_001039447.1|1591677_1592400_-|protease	serine protease SplB	protease	A0A2H4PQN0	Staphylococcus_phage	99.6	2.4e-131
WP_001039423.1|1592524_1593241_-|protease	serine protease SplA	protease	A0A2H4PQN3	Staphylococcus_phage	96.2	2.0e-125
WP_001092763.1|1594204_1594771_+	DUF4888 domain-containing protein	NA	A0A2H4PQH6	Staphylococcus_phage	100.0	3.3e-99
WP_000586140.1|1595244_1595943_-	hypothetical protein	NA	A0A2H4PQH0	Staphylococcus_phage	94.4	3.8e-113
WP_000581552.1|1595939_1596701_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	NA	A0A2H4PQH2	Staphylococcus_phage	100.0	4.4e-131
WP_001096791.1|1596697_1597390_-	lantibiotic protection ABC transporter ATP-binding subunit	NA	A0A2H4PQG7	Staphylococcus_phage	100.0	6.2e-124
WP_000691541.1|1597412_1598786_-	S8 family serine peptidase	NA	A0A2H4PQH1	Staphylococcus_phage	100.0	2.9e-258
WP_000504439.1|1598795_1599314_-	enterotoxin	NA	A0A2H4PQG9	Staphylococcus_phage	100.0	2.0e-95
WP_000566316.1|1599329_1600574_-	lanthionine synthetase C family protein	NA	A0A2H4PQH9	Staphylococcus_phage	99.8	1.1e-237
WP_001092605.1|1600566_1603560_-	lantibiotic dehydratase	NA	A0A2H4PQG8	Staphylococcus_phage	97.3	0.0e+00
WP_000416756.1|1603624_1603768_-	gallidermin/nisin family lantibiotic	NA	A0A2H4PQH4	Staphylococcus_phage	80.9	5.3e-14
WP_000416759.1|1604504_1604648_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA	NA
WP_000782464.1|1604889_1605873_-	bi-component leukocidin LukED subunit D	NA	A0A2H4PQH7	Staphylococcus_phage	99.1	2.3e-185
WP_033841695.1|1605874_1606810_-	beta-channel forming cytolysin	NA	A0A2H4PQI5	Staphylococcus_phage	99.7	1.1e-173
WP_001790220.1|1607609_1608149_+	hypothetical protein	NA	Q4ZCB9	Staphylococcus_virus	76.8	2.0e-61
WP_000206350.1|1608161_1608950_+	DUF1828 domain-containing protein	NA	A0A2H4PQI0	Staphylococcus_phage	95.8	5.3e-140
WP_000132890.1|1611406_1611961_-	serine hydrolase family protein	NA	NA	NA	NA	NA
WP_000167538.1|1612283_1613684_-	protoporphyrinogen oxidase	NA	NA	NA	NA	NA
WP_000162881.1|1613707_1614631_-	ferrochelatase	NA	NA	NA	NA	NA
WP_000233526.1|1614688_1615726_-	uroporphyrinogen decarboxylase	NA	NA	NA	NA	NA
WP_001790154.1|1615715_1615826_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000737976.1|1615988_1616492_+	signal transduction protein TraP	NA	NA	NA	NA	NA
WP_001245769.1|1616615_1617839_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_000216878.1|1617831_1618572_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	29.8	1.2e-24
WP_000004981.1|1618705_1619128_+	HIT family protein	NA	NA	NA	NA	NA
WP_000648118.1|1619269_1619635_+	YtxH domain-containing protein	NA	NA	NA	NA	NA
WP_000477959.1|1620367_1620925_+	DUF3267 domain-containing protein	NA	NA	NA	NA	NA
WP_000782121.1|1621129_1622092_+	foldase	NA	NA	NA	NA	NA
WP_001244175.1|1622212_1623154_-	3'-5' exoribonuclease YhaM	NA	NA	NA	NA	NA
WP_000584648.1|1623150_1626087_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_000238227.1|1626076_1627273_-	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_001791795.1|1627563_1627662_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000290301.1|1628044_1628389_-	YlbF/YmcA family competence regulator	NA	A0A1X9I5Y8	Streptococcus_phage	29.7	7.5e-06
WP_000992527.1|1628457_1629582_-	DUF445 domain-containing protein	NA	NA	NA	NA	NA
WP_000375864.1|1629760_1630225_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_001045133.1|1630580_1631204_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_000437967.1|1631225_1632338_-	GAF domain-containing sensor histidine kinase	NA	NA	NA	NA	NA
WP_000669376.1|1632500_1633322_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_000116224.1|1633784_1635170_-	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_000901021.1|1635365_1635761_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000031108.1|1636420_1636573_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001251224.1|1636597_1637197_-	glucosamine-6-phosphate isomerase	NA	NA	NA	NA	NA
WP_000181398.1|1637355_1637826_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_001144055.1|1639108_1639837_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	42.7	1.0e-36
WP_000649907.1|1639823_1641281_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000063582.1|1641538_1642600_-	PTS transporter subunit IIC	NA	NA	NA	NA	NA
WP_001808146.1|1643092_1644412_+|transposase	ISL3-like element IS1181 family transposase	transposase	NA	NA	NA	NA
>prophage 10
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	1690335	1793099	2964112	head,capsid,portal,tRNA,integrase,holin,tail,protease,terminase,transposase	Staphylococcus_phage(91.03%)	118	1737383:1737442	1791550:1792873
WP_000545370.1|1690335_1691763_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	tRNA	NA	NA	NA	NA
WP_000027928.1|1691775_1693233_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA	tRNA	NA	NA	NA	NA
WP_000170162.1|1693234_1693537_-|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	tRNA	NA	NA	NA	NA
WP_000957020.1|1693904_1695443_+	sodium/proline symporter PutP	NA	NA	NA	NA	NA
WP_000831698.1|1695531_1696731_-	CamS family sex pheromone protein	NA	NA	NA	NA	NA
WP_000774565.1|1696743_1698747_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.1	5.8e-114
WP_000992921.1|1698750_1700943_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	42.2	1.0e-135
WP_000272070.1|1700939_1701632_-	heptaprenylglyceryl phosphate synthase	NA	NA	NA	NA	NA
WP_001165363.1|1701803_1702106_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000572878.1|1702214_1703510_-	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	32.9	1.6e-16
WP_000827749.1|1704370_1705537_+|protease	cysteine protease staphopain A	protease	NA	NA	NA	NA
WP_000434933.1|1705567_1705894_+	staphostatin A	NA	NA	NA	NA	NA
WP_000669862.1|1706185_1706359_-	NETI motif-containing protein	NA	NA	NA	NA	NA
WP_000011542.1|1706339_1706942_-	DUF2179 domain-containing protein	NA	NA	NA	NA	NA
WP_000040873.1|1707212_1708034_-	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	52.7	1.8e-69
WP_000284431.1|1708026_1709496_-	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	45.1	4.5e-108
WP_000897635.1|1709679_1710756_+	nitric oxide synthase oxygenase	NA	NA	NA	NA	NA
WP_001177817.1|1710775_1711570_+	prephenate dehydratase	NA	NA	NA	NA	NA
WP_001802312.1|1711641_1711749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000323161.1|1711759_1713322_-	SLC13 family permease	NA	NA	NA	NA	NA
WP_000275730.1|1713526_1714624_-	pectate lyase	NA	U5PWM6	Bacillus_phage	34.6	1.9e-47
WP_000149686.1|1714995_1715556_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.2	2.0e-32
WP_001140871.1|1715608_1716538_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA	NA
WP_001790680.1|1716732_1716906_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001021214.1|1716957_1718337_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_023487202.1|1718456_1719485_-	lactonase family protein	NA	NA	NA	NA	NA
WP_000205106.1|1719754_1720156_+	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	42.9	6.0e-23
WP_000267034.1|1720728_1720902_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001188077.1|1721352_1722393_+	linear amide C-N hydrolase	NA	NA	NA	NA	NA
WP_000713072.1|1722449_1723292_-	DUF4097 family beta strand repeat protein	NA	NA	NA	NA	NA
WP_001033971.1|1723288_1723846_-	DUF1700 domain-containing protein	NA	NA	NA	NA	NA
WP_000966288.1|1723905_1724430_-	membrane protein	NA	NA	NA	NA	NA
WP_000182842.1|1724550_1725114_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_001221651.1|1725179_1725920_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA	NA
WP_000763048.1|1725919_1726792_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	NA	A0A2H4PQG7	Staphylococcus_phage	35.2	6.1e-28
WP_000645727.1|1726788_1727469_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA	NA
WP_000991302.1|1727469_1728366_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	NA	A0A2H4PQG7	Staphylococcus_phage	30.2	1.1e-16
WP_000691584.1|1728362_1728743_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000681968.1|1729006_1729183_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000990056.1|1729425_1729524_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001068546.1|1729722_1731009_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_001549158.1|1731633_1733388_-	MAP domain-containing protein	NA	NA	NA	NA	NA
WP_000669789.1|1735676_1735856_+	hypothetical protein	NA	A0A1W6JQ29	Staphylococcus_phage	100.0	2.2e-25
WP_001791826.1|1736166_1736427_+	hypothetical protein	NA	M9NS66	Staphylococcus_phage	100.0	2.3e-23
WP_000702263.1|1736479_1736830_-	complement inhibitor SCIN-A	NA	A0A1P8L6B0	Staphylococcus_phage	100.0	7.5e-54
1737383:1737442	attL	AGTCAAGTCCAGACTCCTGTGTAAAATGCTATACAATGTTTTTACCATTTCTACTTATCA	NA	NA	NA	NA
WP_000195429.1|1737432_1738605_-|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_000727649.1|1738847_1739297_+	chemotaxis-inhibiting protein CHIPS	NA	A0A1P8L6A8	Staphylococcus_phage	100.0	1.1e-78
WP_020444758.1|1739391_1739850_-	amidase	NA	R9QTN8	Staphylococcus_phage	98.7	4.9e-85
WP_000919350.1|1740376_1740868_-	staphylokinase	NA	A0A1X9H028	Staphylococcus_phage	100.0	9.5e-87
WP_000861038.1|1741058_1741814_-	CHAP domain-containing protein	NA	D2JLG5	Staphylococcus_phage	100.0	3.4e-152
WP_000611512.1|1741825_1742080_-|holin	phage holin	holin	D2JLG4	Staphylococcus_phage	100.0	4.1e-41
WP_001791821.1|1742131_1742239_+	hypothetical protein	NA	NA	NA	NA	NA
WP_011447039.1|1742291_1742468_-|holin	putative holin-like toxin	holin	D2JLG3	Staphylococcus_phage	98.3	2.2e-22
WP_000750406.1|1742576_1743350_-	staphylococcal enterotoxin type A	NA	A0EX09	Staphylococcus_phage	100.0	2.2e-146
WP_000340977.1|1743770_1744145_-	hypothetical protein	NA	G4KNR3	Staphylococcus_phage	100.0	3.3e-39
WP_001040259.1|1744200_1744488_-	hypothetical protein	NA	G4KNR2	Staphylococcus_phage	100.0	9.9e-44
WP_001153681.1|1744534_1744687_-	hypothetical protein	NA	D2JLG0	Staphylococcus_phage	100.0	5.2e-20
WP_000582190.1|1744676_1748462_-	hypothetical protein	NA	A0EX05	Staphylococcus_phage	100.0	0.0e+00
WP_000567413.1|1748477_1749962_-|tail	phage tail protein	tail	A0EX04	Staphylococcus_phage	100.0	4.5e-297
WP_001643732.1|1749958_1754488_-|tail	phage tail tape measure protein	tail	A0EX03	Staphylococcus_phage	100.0	0.0e+00
WP_001096355.1|1754732_1755083_-	hypothetical protein	NA	G4KNQ8	Staphylococcus_phage	100.0	7.8e-59
WP_071621395.1|1755132_1755357_-	hypothetical protein	NA	A0A075LYE8	Staphylococcus_phage	100.0	3.0e-32
WP_000268735.1|1755398_1756043_-|tail	phage tail protein	tail	A0EWZ9	Staphylococcus_phage	100.0	3.8e-120
WP_000565498.1|1756043_1756451_-	hypothetical protein	NA	G4KNQ6	Staphylococcus_phage	100.0	7.1e-72
WP_000114226.1|1756447_1756852_-	hypothetical protein	NA	G4KNQ5	Staphylococcus_phage	100.0	4.3e-69
WP_000755150.1|1756848_1757211_-|head,tail	head-tail adaptor protein	head,tail	G4KNQ4	Staphylococcus_phage	100.0	4.4e-65
WP_000150936.1|1757194_1757479_-|head,tail	phage head-tail adapter protein	head,tail	A0A2I6PDJ5	Staphylococcus_phage	100.0	2.3e-45
WP_000238236.1|1757468_1757753_-	hypothetical protein	NA	A0A2I6PDJ3	Staphylococcus_phage	100.0	1.8e-45
WP_000154559.1|1757772_1758918_-|capsid	phage major capsid protein	capsid	G4KNQ3	Staphylococcus_phage	100.0	9.6e-215
WP_065252079.1|1758941_1759679_-|protease	Clp protease ClpP	protease	G4KNQ2	Staphylococcus_phage	99.6	1.5e-128
WP_000025274.1|1759662_1760850_-|portal	phage portal protein	portal	A0A2I6PDI1	Staphylococcus_phage	100.0	1.0e-219
WP_000625088.1|1760865_1762527_-|terminase	terminase large subunit	terminase	A0A2I6PDJ8	Staphylococcus_phage	100.0	0.0e+00
WP_000402904.1|1762523_1762868_-	hypothetical protein	NA	G4KNP9	Staphylococcus_phage	100.0	9.4e-57
WP_000988336.1|1762997_1763297_-	HNH endonuclease	NA	A0EWY8	Staphylococcus_phage	100.0	4.6e-52
WP_000590122.1|1763528_1763945_-	hypothetical protein	NA	G4KNP7	Staphylococcus_phage	100.0	1.3e-76
WP_000265043.1|1763972_1764173_-	DUF1514 domain-containing protein	NA	A0A2I6PDV9	Staphylococcus_phage	100.0	1.4e-28
WP_000595265.1|1764172_1764322_-	transcriptional activator RinB	NA	A0A1W6JPZ2	Staphylococcus_phage	100.0	4.8e-18
WP_000592207.1|1764318_1764705_-	hypothetical protein	NA	W5R986	Staphylococcus_phage	100.0	3.0e-64
WP_000195803.1|1764701_1764908_-	DUF1381 domain-containing protein	NA	A0A0H3U2R7	Staphylococcus_phage	100.0	1.3e-29
WP_000185659.1|1764944_1765487_-	dUTP pyrophosphatase	NA	A0EWY2	Staphylococcus_phage	100.0	1.1e-96
WP_000028422.1|1765479_1765662_-	hypothetical protein	NA	A0EWY1	Staphylococcus_phage	100.0	2.6e-26
WP_001065091.1|1765651_1765903_-	DUF1024 family protein	NA	A0EWY0	Staphylococcus_phage	100.0	1.9e-38
WP_000131366.1|1766074_1766317_-	hypothetical protein	NA	A0EWX8	Staphylococcus_phage	100.0	3.9e-41
WP_000101274.1|1766320_1766689_-	hypothetical protein	NA	W5RAK8	Staphylococcus_phage	100.0	8.2e-51
WP_000338531.1|1767019_1767238_-	hypothetical protein	NA	A0A2I6PDG4	Staphylococcus_phage	98.6	1.2e-36
WP_000934764.1|1768147_1768618_-	single-stranded DNA-binding protein	NA	A0EWX3	Staphylococcus_phage	100.0	7.4e-81
WP_071621397.1|1768618_1769236_-	MBL fold metallo-hydrolase	NA	S4SWA4	Staphylococcus_phage	100.0	9.1e-87
WP_000138472.1|1769316_1770237_-	recombinase	NA	S4SUN6	Staphylococcus_phage	100.0	2.3e-166
WP_000700577.1|1770238_1772182_-	AAA family ATPase	NA	A0EWX0	Staphylococcus_phage	100.0	0.0e+00
WP_001205732.1|1772190_1772454_-	hypothetical protein	NA	A0A2I6PDG2	Staphylococcus_phage	100.0	7.7e-43
WP_000291503.1|1772462_1772723_-	DUF1108 family protein	NA	A0EWW8	Staphylococcus_phage	100.0	8.9e-44
WP_000165375.1|1772703_1773030_-	DUF2482 family protein	NA	W5RAK4	Staphylococcus_phage	100.0	1.2e-53
WP_000066017.1|1773124_1773286_-	DUF1270 domain-containing protein	NA	D2JGJ6	Staphylococcus_phage	100.0	4.3e-20
WP_001120197.1|1773282_1773603_-	DUF771 domain-containing protein	NA	A0A2I6PDH6	Staphylococcus_phage	100.0	1.5e-56
WP_000275058.1|1773661_1774294_+	hypothetical protein	NA	A7TW95	Staphylococcus_phage	100.0	1.5e-113
WP_000939496.1|1774308_1774449_-	hypothetical protein	NA	A0A2I6PDG0	Staphylococcus_phage	100.0	1.9e-16
WP_001148855.1|1774479_1774677_-	hypothetical protein	NA	Q8SDM8	Staphylococcus_phage	100.0	7.0e-33
WP_001148605.1|1774692_1775445_-	oxidoreductase	NA	M9NTH5	Staphylococcus_phage	100.0	1.1e-139
WP_065252080.1|1775495_1775825_+	hypothetical protein	NA	M9NS98	Staphylococcus_phage	99.1	7.8e-53
WP_001025874.1|1775813_1776029_-	DUF2829 domain-containing protein	NA	A0EWV9	Staphylococcus_phage	100.0	6.3e-35
WP_000854072.1|1776044_1776308_-	helix-turn-helix transcriptional regulator	NA	A0A2I6PF09	Staphylococcus_phage	100.0	7.2e-41
WP_001801500.1|1776304_1776478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001031454.1|1776440_1777154_+	helix-turn-helix transcriptional regulator	NA	M9NUL0	Staphylococcus_phage	100.0	1.2e-130
WP_000759682.1|1777169_1778102_+	ATP-dependent helicase	NA	A0A2I6PEZ7	Staphylococcus_phage	100.0	5.7e-173
WP_000591749.1|1778107_1778449_+	hypothetical protein	NA	A0A2I6PF04	Staphylococcus_phage	100.0	4.6e-56
WP_000705248.1|1778652_1778835_+	hypothetical protein	NA	M9NSW6	Staphylococcus_phage	100.0	4.1e-27
WP_000825947.1|1778934_1779399_+	hypothetical protein	NA	A0EWV3	Staphylococcus_phage	100.0	1.1e-28
WP_065252081.1|1779457_1780495_+|integrase	site-specific integrase	integrase	A0EWV2	Staphylococcus_phage	99.7	2.6e-179
WP_023487212.1|1781613_1782627_-	bi-component leukocidin LukGH subunit G	NA	A0A2I6PER8	Staphylococcus_phage	29.1	8.7e-26
WP_000791407.1|1782648_1783704_-	bi-component leukocidin LukGH subunit H	NA	A0A1X9IGW5	Staphylococcus_phage	34.3	2.8e-35
WP_000206638.1|1784138_1785362_+	ArgE/DapE family deacylase	NA	NA	NA	NA	NA
WP_111187741.1|1785733_1786579_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_000825510.1|1786640_1787552_-	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_001045079.1|1787712_1789020_+	TrkH family potassium uptake protein	NA	NA	NA	NA	NA
WP_065252084.1|1789872_1790331_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_000195429.1|1790386_1791559_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_011447041.1|1791753_1792191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001293058.1|1792508_1793099_-|terminase	terminase small subunit	terminase	Q4ZE85	Staphylococcus_phage	95.8	1.1e-97
1791550:1792873	attR	TGATAAGTAGAAATGGTAAAAACATTGTATAGCATTTTACACAGGAGTCTGGACTTGACTAAAATCACTGTTATTAAACAATCTTGTAATTATGCTCATATAACCCACCCTAAAAATATTATGTACCTATTGTTACATACAATAGATACGCAAAATCATTTCTCACTGCAAATCAGGACGTTTCTCAGCGTAAACAAATCATTTCTATTCTTTTGAAAAATATCTGCATATCTTCACAGTAATTTTATAACAGATTAATAAAATTAAAAAAAACATAACAACAAGTATTATAATAAATATTATAATAGCTATCGTATTAAATAGTTTAGAATATGCAAACTGAAAAATAAAAATCACAATTAAAATACTAAGTAATGTAAATGGTAATAGCATCATCAGATCTTTAACATTATTTCTTTGTTCTTGCTCCCAATCGCTAATAGCCCTAAAACTACTTTTTTTATCTATAGGCGATGTAAAAATACCATATATTGAAGGTGCTATACCTCCTAAAATAGCAGTTCCCAAAGTTGTCATTACTGAAATTACTGCGAAAGTATCATCCGAAAGCAATAAATTCAAACTAATGCATTGTTTATTACCCATCGAATTTATTGACCAAATAGCTAGAGAAATAAACAACCCAAAATTTAAAATAAATGATATAGTAATAGCAATTGTTTACAAAACACGAAATTTTTCATTTTTATTTATATTATCCATTTTTCTCCCTTTTTCTTAAATCATTTTATTATATATTACAATAATCAATCTGAAATGTTGATGTAATTTGAAAAAAATATCATACTTTTACTCCTGAAAACCTCCCTAAATCATCAATATGAAAATCAGTATTAGGATATTGCGTTTACAACTCTTTTAAATCTCACTCATTCTTCTCATCGTCTTAACCGATACTATCAATAAATACTGGCAACACCATAAAATATATACCCAATTTATAAAAACCTAATTGACTCATAATCTTCTAACGGTATATCATCCACAATCACAGTATGATTAGGATTATCGTTAGATACATCTTTCACTGCCTTATCTAACCCCTCATCACCTCCGTCCCATTCACCAATATTAATGAATATAGGTACATTACCGTTTATATCATGCTTATCTGTAAATAATTTATGATATTTACCCAACATATCACGAGCTTTTAAACGATCACTAGGTTTTATTGGTACCTCTATCAGTTCAACATGTTCATTATAGACTAATTGTACTTTGCCACTTTGTGGATTTTCTTTATATTCTCCACGCTTGACTACAACTTCTTTCGTTTCTGTTTCATCACCGACTGCCGCAT	NA	NA	NA	NA
>prophage 11
NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2964112	2892164	2935672	2964112	head,capsid,portal,integrase,holin,protease,terminase,tail,plate	Staphylococcus_phage(95.16%)	62	2884892:2884906	2898886:2898900
2884892:2884906	attL	CAACAATTTTTTCAT	NA	NA	NA	NA
WP_140045523.1|2892164_2893370_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1X9H094	Staphylococcus_phage	97.5	2.2e-217
WP_000191464.1|2893495_2894110_+	hypothetical protein	NA	M9QRQ8	Staphylococcus_phage	99.5	2.5e-105
WP_001013104.1|2894106_2894253_-	hypothetical protein	NA	A0A2I6PEK8	Staphylococcus_phage	89.6	1.1e-14
WP_000705240.1|2894288_2894471_-	hypothetical protein	NA	A0A2I6PDR4	Staphylococcus_phage	100.0	5.3e-27
WP_000358224.1|2894540_2895260_-	helix-turn-helix transcriptional regulator	NA	A0A2H4PQQ2	Staphylococcus_phage	100.0	1.3e-132
WP_001198673.1|2895401_2895620_+	helix-turn-helix transcriptional regulator	NA	Q8SDX1	Staphylococcus_phage	100.0	2.9e-35
WP_140045524.1|2895635_2896412_+	Rha family transcriptional regulator	NA	A0A2I6PD87	Staphylococcus_phage	98.8	1.2e-139
WP_000939498.1|2896440_2896584_+	hypothetical protein	NA	W5R8I6	Staphylococcus_phage	100.0	2.5e-16
WP_000642492.1|2896573_2896783_-	hypothetical protein	NA	W5R9J5	Staphylococcus_phage	100.0	1.2e-30
WP_001025401.1|2896838_2897084_+	DUF2829 domain-containing protein	NA	A0A2I6PF15	Staphylococcus_phage	100.0	5.1e-41
WP_001128433.1|2897052_2897418_-	hypothetical protein	NA	A0A2I6PF07	Staphylococcus_phage	100.0	2.4e-63
WP_001036302.1|2897472_2897688_+	hypothetical protein	NA	A0A2I6PDN5	Staphylococcus_phage	100.0	1.3e-32
WP_001124190.1|2897712_2897976_+	helix-turn-helix domain-containing protein	NA	A0A2I6PDM6	Staphylococcus_phage	100.0	1.1e-44
WP_001285963.1|2897988_2898150_+	DUF1270 family protein	NA	A0A2I6PEZ9	Staphylococcus_phage	100.0	5.0e-21
WP_000174994.1|2898228_2898552_+	hypothetical protein	NA	A0A2I6PF12	Staphylococcus_phage	100.0	5.9e-53
WP_000985976.1|2898566_2898929_+	hypothetical protein	NA	A0A2I6PF03	Staphylococcus_phage	100.0	4.9e-56
2898886:2898900	attR	ATGAAAAAATTGTTG	NA	NA	NA	NA
WP_000762534.1|2898925_2900092_+	DUF2800 domain-containing protein	NA	R4WAL0	Staphylococcus_phage	99.7	7.0e-221
WP_000645042.1|2900117_2900675_+	DUF2815 family protein	NA	A0A2I6PF05	Staphylococcus_phage	100.0	1.8e-97
WP_140045531.1|2900743_2902696_+	DNA polymerase	NA	M9QT72	Staphylococcus_phage	98.8	0.0e+00
WP_001164629.1|2902708_2902894_+	DUF3113 family protein	NA	A0A2I6PEM8	Staphylococcus_phage	100.0	7.0e-27
WP_000113974.1|2902893_2903295_+	PVL family protein	NA	A0A2I6PEL5	Staphylococcus_phage	100.0	1.2e-68
WP_000022729.1|2903294_2903549_+	DUF3310 domain-containing protein	NA	A0A2I6PEN5	Staphylococcus_phage	98.8	6.3e-42
WP_012068339.1|2903548_2903797_+	hypothetical protein	NA	Q4ZBK9	Staphylococcus_phage	100.0	1.2e-42
WP_015977708.1|2903811_2904213_+	hypothetical protein	NA	D2JGL3	Staphylococcus_phage	100.0	9.2e-72
WP_000979209.1|2904209_2904557_+	hypothetical protein	NA	D2JGL4	Staphylococcus_phage	100.0	5.9e-59
WP_031895322.1|2904553_2904862_+	hypothetical protein	NA	C8CH03	Staphylococcus_phage	98.0	8.1e-52
WP_001065023.1|2904854_2905091_+	DUF1024 family protein	NA	C8CH04	Staphylococcus_phage	100.0	1.1e-35
WP_000185654.1|2905095_2905638_+	dUTP pyrophosphatase	NA	Q4ZD81	Staphylococcus_virus	100.0	1.5e-96
WP_000195831.1|2905674_2905911_+	DUF1381 domain-containing protein	NA	C8CH06	Staphylococcus_phage	100.0	1.1e-35
WP_000483477.1|2905935_2906172_+	hypothetical protein	NA	A7TWB3	Staphylococcus_phage	100.0	1.9e-37
WP_031764091.1|2906164_2906317_+	transcriptional regulator	NA	A0A2I6PE89	Staphylococcus_phage	100.0	2.6e-19
WP_000265251.1|2906384_2906585_+	DUF1514 domain-containing protein	NA	Q9B0E8	Staphylococcus_virus	100.0	3.8e-26
WP_140045525.1|2906636_2909084_+	hypothetical protein	NA	A0A0K1LKN1	Staphylococcus_phage	98.9	0.0e+00
WP_015978074.1|2909186_2909291_-	hypothetical protein	NA	A0A2I6PDP6	Staphylococcus_phage	100.0	2.7e-12
WP_000665205.1|2909424_2909715_+	VRR-NUC domain-containing protein	NA	U5U7A3	Staphylococcus_phage	100.0	4.9e-51
WP_015978080.1|2909695_2911063_+	DEAD/DEAH box helicase	NA	Q4ZCM9	Staphylococcus_virus	100.0	6.0e-264
WP_000513699.1|2911075_2911513_+	transcriptional regulator	NA	A0A2I6PDC2	Staphylococcus_phage	100.0	4.6e-77
WP_000160689.1|2911669_2911984_+	HNH endonuclease	NA	A0A2I6PDC4	Staphylococcus_phage	100.0	2.5e-56
WP_000778932.1|2912111_2912417_+|terminase	terminase	terminase	A0A2I6PE27	Staphylococcus_phage	100.0	2.9e-49
WP_000153551.1|2912406_2914098_+|terminase	terminase large subunit	terminase	A0A2I6PE99	Staphylococcus_phage	99.8	0.0e+00
WP_140045526.1|2914102_2915341_+|portal	phage portal protein	portal	A0A2I6PEA6	Staphylococcus_phage	99.8	2.0e-234
WP_000061866.1|2915324_2916098_+|protease	Clp protease ClpP	protease	A0A2I6PEQ7	Staphylococcus_phage	100.0	2.4e-137
WP_001142734.1|2916109_2917273_+|capsid	phage major capsid protein	capsid	A0A2I6PEQ3	Staphylococcus_phage	100.0	1.2e-217
WP_000050973.1|2917341_2917620_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A2I6PEQ1	Staphylococcus_phage	100.0	2.1e-46
WP_000395502.1|2917631_2917964_+	hypothetical protein	NA	A0A2I6PEA5	Staphylococcus_phage	100.0	3.1e-57
WP_000110023.1|2917960_2918362_+	hypothetical protein	NA	A0A2I6PF54	Staphylococcus_phage	100.0	8.1e-68
WP_001023806.1|2918362_2918758_+	DUF3168 domain-containing protein	NA	A0A2I6PEQ4	Staphylococcus_phage	100.0	8.8e-67
WP_000807536.1|2918792_2919434_+|tail	tail protein	tail	A0A2I6PEP6	Staphylococcus_phage	100.0	5.9e-121
WP_000169131.1|2919525_2919981_+	Ig domain-containing protein	NA	Q9B0D4	Staphylococcus_phage	100.0	2.8e-77
WP_000589167.1|2920038_2920389_+	hypothetical protein	NA	A0A2I6PEQ2	Staphylococcus_phage	100.0	1.1e-55
WP_000438833.1|2920430_2920589_+	hypothetical protein	NA	A0A2I6PES8	Staphylococcus_phage	100.0	1.2e-19
WP_140045527.1|2920602_2926779_+|tail	phage tail tape measure protein	tail	A0A2I6PDS2	Staphylococcus_phage	98.2	0.0e+00
WP_001190533.1|2926778_2927603_+|tail	phage tail family protein	tail	A0A2I6PER3	Staphylococcus_phage	100.0	4.1e-159
WP_000384474.1|2927611_2929195_+	peptidase	NA	A0A2I6PEQ5	Staphylococcus_phage	100.0	9.3e-309
WP_000179858.1|2929194_2929485_+	hypothetical protein	NA	U5U457	Staphylococcus_phage	100.0	2.1e-49
WP_000429558.1|2929500_2931411_+	minor structural protein	NA	A0A2I6PEQ9	Staphylococcus_phage	100.0	0.0e+00
WP_140045528.1|2931410_2932877_+|plate	BppU family phage baseplate upper protein	plate	B5WZQ8	Staphylococcus_phage	98.2	4.8e-251
WP_001166599.1|2932876_2933266_+	DUF2977 domain-containing protein	NA	A0A2I6PER1	Staphylococcus_phage	100.0	2.2e-62
WP_000916020.1|2933258_2933423_+	XkdX family protein	NA	A0A2I6PES4	Staphylococcus_phage	100.0	4.9e-24
WP_000466784.1|2933468_2933768_+	DUF2951 domain-containing protein	NA	A0A2I6PER2	Staphylococcus_phage	100.0	2.0e-31
WP_000339142.1|2933903_2934206_+|holin	phage holin	holin	A0A2I6PF56	Staphylococcus_phage	99.0	1.2e-47
WP_140045529.1|2934217_2935672_+	CHAP domain-containing protein	NA	A7TWL1	Staphylococcus_phage	99.8	2.0e-289
>prophage 1
NZ_CP041009	Staphylococcus aureus strain FDAARGOS_766 plasmid unnamed1, complete sequence	32188	0	17425	32188	transposase	Mycobacterium_phage(25.0%)	18	NA	NA
WP_002504062.1|381_2139_+	beta-lactam sensor/signal transducer BlaR1	NA	NA	NA	NA	NA
WP_001284656.1|2128_2509_+	penicillinase repressor BlaI	NA	NA	NA	NA	NA
WP_000690625.1|2772_3351_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.1	4.2e-41
WP_000583528.1|3476_4085_+	recombinase family protein	NA	G8I4U3	Mycobacterium_phage	30.2	1.0e-13
WP_001049146.1|4330_4669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000797248.1|4673_4859_+	helix-turn-helix transcriptional regulator	NA	A0A142LP09	Marinitoga_camini_virus	37.9	9.9e-05
WP_001807342.1|4991_5558_-	multidrug-binding transcriptional regulator QacR	NA	NA	NA	NA	NA
WP_000622776.1|5735_7280_+	quaternary ammonium compound efflux MFS transporter QacA	NA	A0A0M3UL24	Mycobacterium_phage	26.8	4.2e-32
WP_000195429.1|7512_8685_+|transposase	IS256-like element IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	100.0	3.5e-135
WP_001077893.1|8816_9377_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001807343.1|9452_9575_+	HAD hydrolase family protein	NA	NA	NA	NA	NA
WP_000848988.1|9692_10463_-	DUF536 domain-containing protein	NA	NA	NA	NA	NA
WP_001132442.1|10906_11851_+	replication initiator protein A	NA	Q9MCM7	Streptococcus_virus	47.1	1.5e-19
WP_001030803.1|12899_13088_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000119692.1|14106_14454_+	helix-turn-helix transcriptional regulator	NA	E4ZFI8	Streptococcus_phage	35.8	1.9e-12
WP_001199886.1|14644_14785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_078065292.1|15802_16714_-	protein rep	NA	NA	NA	NA	NA
WP_012816671.1|16750_17425_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	86.6	7.6e-111
>prophage 2
NZ_CP041009	Staphylococcus aureus strain FDAARGOS_766 plasmid unnamed1, complete sequence	32188	20506	24385	32188	transposase	Staphylococcus_phage(50.0%)	4	NA	NA
WP_001105988.1|20506_21181_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	99.1	2.6e-127
WP_001794375.1|21266_21815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000790333.1|22009_22660_-	organomercurial lyase MerB	NA	NA	NA	NA	NA
WP_000193219.1|22741_24385_-	mercury(II) reductase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.4	1.7e-50
>prophage 3
NZ_CP041009	Staphylococcus aureus strain FDAARGOS_766 plasmid unnamed1, complete sequence	32188	27601	31055	32188	transposase	Streptococcus_phage(66.67%)	3	NA	NA
WP_001105968.1|27601_28276_+|transposase	IS6-like element IS257 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	98.7	9.9e-127
WP_000003264.1|28510_30694_-	cadmium-translocating P-type ATPase CadA	NA	E4ZFI9	Streptococcus_phage	64.0	8.1e-255
WP_000726007.1|30686_31055_-	Cd(II)/Pb(II)/Zn(II)-sensing metalloregulatory transcriptional repressor CadC	NA	E4ZFI8	Streptococcus_phage	85.2	4.2e-55
