assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	1	46378-46478	1	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TTATGAATTGAGTATTAAATTTG	23	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|70aa|up_9|NZ_CP041010.1_37950_38160_-,NA|128aa|up_7|NZ_CP041010.1_38984_39368_-,NA|98aa|up_5|NZ_CP041010.1_40321_40615_-,NA|34aa|up_0|NZ_CP041010.1_45602_45704_+,NA|221aa|down_1|NZ_CP041010.1_47568_48231_-	NA|70aa|up_9|NZ_CP041010.1_37950_38160_-	NA	NA|194aa|up_8|NZ_CP041010.1_38337_38919_+	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only]	NA|128aa|up_7|NZ_CP041010.1_38984_39368_-	NA	NA|209aa|up_6|NZ_CP041010.1_39622_40249_-	NF033193, lipo_NDxxF, NDxxF motif lipoprotein	NA|98aa|up_5|NZ_CP041010.1_40321_40615_-	NA	NA|508aa|up_4|NZ_CP041010.1_40693_42217_-	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional	NA|190aa|up_3|NZ_CP041010.1_42232_42802_-	TIGR03137, AhpC, peroxiredoxin	NA|252aa|up_2|NZ_CP041010.1_43293_44049_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|463aa|up_1|NZ_CP041010.1_44129_45518_-	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only]	NA|34aa|up_0|NZ_CP041010.1_45602_45704_+	NA	NA|319aa|down_0|NZ_CP041010.1_46494_47451_-	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional	NA|221aa|down_1|NZ_CP041010.1_47568_48231_-	NA	NA|136aa|down_2|NZ_CP041010.1_48373_48781_-	pfam11181, YflT, Heat induced stress protein YflT	NA|193aa|down_3|NZ_CP041010.1_49293_49872_+	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated	NA|423aa|down_4|NZ_CP041010.1_49871_51140_+	TIGR03173, pbuX, xanthine permease	NA|489aa|down_5|NZ_CP041010.1_51177_52644_+	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed	NA|514aa|down_6|NZ_CP041010.1_52668_54210_+	PRK00074, guaA, GMP synthase; Reviewed	NA|398aa|down_7|NZ_CP041010.1_54277_55471_-	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|67aa|down_8|NZ_CP041010.1_55497_55698_-	pfam11372, DUF3173, Domain of unknown function (DUF3173)	NA|77aa|down_9|NZ_CP041010.1_56195_56426_-	pfam12645, HTH_16, Helix-turn-helix domain
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	2	307873-307965	2	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	32	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_3|NZ_CP041010.1_304356_304464_+,NA|169aa|down_4|NZ_CP041010.1_311712_312219_+,NA|239aa|down_5|NZ_CP041010.1_312380_313097_+	NA|313aa|up_9|NZ_CP041010.1_298559_299498_+	cd19083, AKR_AKR11A1_11D1, AKR11A and  AKR11D families of aldo-keto reductase (AKR)	NA|179aa|up_8|NZ_CP041010.1_299708_300245_+	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only]	NA|159aa|up_7|NZ_CP041010.1_300413_300890_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|432aa|up_6|NZ_CP041010.1_300929_302225_+	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only]	NA|174aa|up_5|NZ_CP041010.1_302252_302774_+	pfam08741, YwhD, YwhD family	NA|337aa|up_4|NZ_CP041010.1_303271_304282_+	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional	NA|36aa|up_3|NZ_CP041010.1_304356_304464_+	NA	NA|128aa|up_2|NZ_CP041010.1_304589_304973_+	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown]	NA|554aa|up_1|NZ_CP041010.1_304969_306631_+	PRK01611, argS, arginyl-tRNA synthetase; Reviewed	NA|212aa|up_0|NZ_CP041010.1_307019_307655_+	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair]	NA|276aa|down_0|NZ_CP041010.1_308093_308921_+	cd01143, YvrC, Periplasmic binding protein YvrC	NA|317aa|down_1|NZ_CP041010.1_309068_310019_+	pfam01032, FecCD, FecCD transport family	NA|240aa|down_2|NZ_CP041010.1_310073_310793_+	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only]	NA|267aa|down_3|NZ_CP041010.1_310776_311577_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|169aa|down_4|NZ_CP041010.1_311712_312219_+	NA	NA|239aa|down_5|NZ_CP041010.1_312380_313097_+	NA	NA|263aa|down_6|NZ_CP041010.1_313265_314054_+	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|125aa|down_7|NZ_CP041010.1_314304_314679_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|310aa|down_8|NZ_CP041010.1_315626_316556_-	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown]	NA|75aa|down_9|NZ_CP041010.1_316750_316975_-	pfam11148, DUF2922, Protein of unknown function (DUF2922)
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	3	467982-468062	3	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	TTCTTTATGTTGGGGCCCCGCCAACT	26	1	10	468008-468036|468008-468036|468008-468036|468008-468036|468008-468036|468008-468036|468008-468036|468008-468036|468008-468036|468008-468036	NZ_CP041010.1_2489714-2489742|NZ_CP041010.1_1519724-1519696|NZ_CP041010.1_1519838-1519810|NZ_CP041010.1_2957128-2957100|NZ_CP041010.1_2957183-2957155|NZ_CP041010.1_517838-517866|NZ_CP041010.1_586296-586324|NZ_CP041010.1_1328358-1328386|NZ_CP041010.1_1689679-1689707|NZ_CP041010.1_2234856-2234828	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|35aa|up_6|NZ_CP041010.1_458895_459000_+,NA|36aa|up_4|NZ_CP041010.1_460432_460540_+,NA	NA|225aa|up_9|NZ_CP041010.1_454601_455276_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|191aa|up_8|NZ_CP041010.1_455336_455909_+	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis]	NA|844aa|up_7|NZ_CP041010.1_456322_458854_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|35aa|up_6|NZ_CP041010.1_458895_459000_+	NA	NA|370aa|up_5|NZ_CP041010.1_459168_460279_+	PRK00578, prfB, peptide chain release factor 2; Validated	NA|36aa|up_4|NZ_CP041010.1_460432_460540_+	NA	NA|280aa|up_3|NZ_CP041010.1_460687_461527_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|79aa|up_2|NZ_CP041010.1_462347_462584_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_1|NZ_CP041010.1_462852_464838_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_0|NZ_CP041010.1_464845_467692_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|down_0|NZ_CP041010.1_468298_469231_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|down_1|NZ_CP041010.1_469236_470076_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|down_2|NZ_CP041010.1_470083_470569_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|down_3|NZ_CP041010.1_470576_472016_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|down_4|NZ_CP041010.1_472082_473018_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|332aa|down_5|NZ_CP041010.1_474805_475801_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_6|NZ_CP041010.1_475910_476855_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_7|NZ_CP041010.1_477427_478015_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_8|NZ_CP041010.1_478257_479160_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_9|NZ_CP041010.1_479863_480493_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	4	473380-473465	4	CRISPRCasFinder	no	cas3	cas3,DEDDh,DinG,csa3,WYL	Unclear	CCAACTTGCACATTATTGTAAGCTGACTTT	30	1	5	473410-473435|473410-473435|473410-473435|473410-473435|473410-473435	NZ_CP041010.1_2489682-2489707|NZ_CP041010.1_436427-436402|NZ_CP041010.1_833076-833051|NZ_CP041010.1_436483-436458|NZ_CP041010.1_566626-566601	NA	1	1	Unclear	cas3,DEDDh,DinG,csa3,WYL	NA|36aa|up_9|NZ_CP041010.1_460432_460540_+,NA|49aa|down_5|NZ_CP041010.1_480681_480828_-	NA|36aa|up_9|NZ_CP041010.1_460432_460540_+	NA	NA|280aa|up_8|NZ_CP041010.1_460687_461527_+	COG3942, COG3942, Surface antigen [General function prediction only]	NA|79aa|up_7|NZ_CP041010.1_462347_462584_+	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown]	NA|662aa|up_6|NZ_CP041010.1_462852_464838_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|949aa|up_5|NZ_CP041010.1_464845_467692_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|311aa|up_4|NZ_CP041010.1_468298_469231_+	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional	NA|280aa|up_3|NZ_CP041010.1_469236_470076_+	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed	NA|162aa|up_2|NZ_CP041010.1_470083_470569_+	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins	NA|480aa|up_1|NZ_CP041010.1_470576_472016_+	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs	NA|312aa|up_0|NZ_CP041010.1_472082_473018_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|332aa|down_0|NZ_CP041010.1_474805_475801_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|315aa|down_1|NZ_CP041010.1_475910_476855_+	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA	NA|196aa|down_2|NZ_CP041010.1_477427_478015_+	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed	NA|301aa|down_3|NZ_CP041010.1_478257_479160_-	COG1090, COG1090, Predicted nucleoside-diphosphate sugar epimerase [General function prediction only]	NA|210aa|down_4|NZ_CP041010.1_479863_480493_+	PRK00409, PRK00409, recombination and DNA strand exchange inhibitor protein; Reviewed	NA|49aa|down_5|NZ_CP041010.1_480681_480828_-	NA	NA|338aa|down_6|NZ_CP041010.1_481252_482266_+	COG2390, DeoR, Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]	NA|337aa|down_7|NZ_CP041010.1_482318_483329_+	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|397aa|down_8|NZ_CP041010.1_483467_484658_+	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|254aa|down_9|NZ_CP041010.1_484779_485541_+	PRK00042, tpiA, triosephosphate isomerase; Provisional
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	5	517772-517853	5	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCAACTTGCATTGTCTGTAGAA	24	1	2	517796-517829|517796-517829	NZ_CP041010.1_1044635-1044602|NZ_CP041010.1_1133013-1133046	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|38aa|up_1|NZ_CP041010.1_516674_516788_+,NA	NA|165aa|up_9|NZ_CP041010.1_510969_511464_-	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain	NA|391aa|up_8|NZ_CP041010.1_511584_512757_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|141aa|up_7|NZ_CP041010.1_513194_513617_-	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily	NA|239aa|up_6|NZ_CP041010.1_513764_514481_+	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase	NA|180aa|up_5|NZ_CP041010.1_514563_515103_+	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA	NA|107aa|up_4|NZ_CP041010.1_515252_515573_-	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|119aa|up_3|NZ_CP041010.1_515716_516073_+	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC	NA|127aa|up_2|NZ_CP041010.1_516230_516611_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|38aa|up_1|NZ_CP041010.1_516674_516788_+	NA	NA|293aa|up_0|NZ_CP041010.1_516789_517668_+	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown]	NA|129aa|down_0|NZ_CP041010.1_518409_518796_+	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair]	NA|99aa|down_1|NZ_CP041010.1_518788_519085_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|342aa|down_2|NZ_CP041010.1_519334_520360_+	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]	NA|232aa|down_3|NZ_CP041010.1_520352_521048_+	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism]	NA|274aa|down_4|NZ_CP041010.1_521065_521887_+	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism]	NA|65aa|down_5|NZ_CP041010.1_522240_522435_+	COG3237, COG3237, Uncharacterized protein conserved in bacteria [Function unknown]	NA|284aa|down_6|NZ_CP041010.1_522667_523519_-	COG2035, COG2035, Predicted membrane protein [Function unknown]	NA|254aa|down_7|NZ_CP041010.1_523846_524608_+	COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]	NA|436aa|down_8|NZ_CP041010.1_524705_526013_+	COG0719, SufB, Cysteine desulfurase activator SufB [Posttranslational modification, protein turnover, chaperones]	NA|414aa|down_9|NZ_CP041010.1_526127_527369_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	6	566627-566909	1	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	AAAGNCAGCTNNNNANANNNTGCAAGTTGG	30	2	6	566657-566682|566657-566682|566657-566682|566657-566682|566771-566796|566771-566796	NZ_CP041010.1_566601-566626|NZ_CP041010.1_2489707-2489682|NZ_CP041010.1_436402-436427|NZ_CP041010.1_833051-833076|NZ_CP041010.1_473491-473466|NZ_CP041010.1_2956966-2956991	NA	4	4	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA,NA	NA|499aa|up_9|NZ_CP041010.1_555515_557012_-	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed	NA|110aa|up_8|NZ_CP041010.1_557004_557334_-	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed	NA|143aa|up_7|NZ_CP041010.1_557345_557774_-	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B	NA|802aa|up_6|NZ_CP041010.1_557766_560172_-	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed	NA|128aa|up_5|NZ_CP041010.1_560302_560686_-	pfam08810, KapB, Kinase associated protein B	NA|198aa|up_4|NZ_CP041010.1_560749_561343_+	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain	NA|126aa|up_3|NZ_CP041010.1_561758_562136_+	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis]	NA|376aa|up_2|NZ_CP041010.1_562497_563625_+	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4	NA|397aa|up_1|NZ_CP041010.1_563932_565123_+	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional	NA|415aa|up_0|NZ_CP041010.1_565231_566476_+	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]	NA|310aa|down_0|NZ_CP041010.1_566978_567908_-	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins	NA|460aa|down_1|NZ_CP041010.1_568149_569529_-	PRK00855, PRK00855, argininosuccinate lyase; Provisional	NA|402aa|down_2|NZ_CP041010.1_569518_570724_-	PRK00509, PRK00509, argininosuccinate synthase; Provisional	NA|444aa|down_3|NZ_CP041010.1_571074_572406_+	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional	NA|192aa|down_4|NZ_CP041010.1_572730_573306_+	COG0398, COG0398, Uncharacterized conserved protein [Function unknown]	NA|175aa|down_5|NZ_CP041010.1_573310_573835_+	TIGR02227, Inactive_signal_peptidase_IA	NA|192aa|down_6|NZ_CP041010.1_573850_574426_+	TIGR02227, Inactive_signal_peptidase_IA	NA|1159aa|down_7|NZ_CP041010.1_574585_578062_+	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit	NA|1218aa|down_8|NZ_CP041010.1_578062_581716_+	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type	NA|301aa|down_9|NZ_CP041010.1_581881_582784_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	7	701642-701729	6	CRISPRCasFinder	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	CCCCTAACAACTAAAAGTTGTAAGG	25	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|40aa|up_0|NZ_CP041010.1_701518_701638_+,NA|45aa|down_0|NZ_CP041010.1_701738_701873_-,NA|432aa|down_1|NZ_CP041010.1_702024_703320_+	NA|730aa|up_9|NZ_CP041010.1_690096_692286_+	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL	NA|495aa|up_8|NZ_CP041010.1_692264_693749_+	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional	NA|343aa|up_7|NZ_CP041010.1_693741_694770_+	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional	NA|189aa|up_6|NZ_CP041010.1_694772_695339_+	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism]	NA|493aa|up_5|NZ_CP041010.1_695353_696832_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|416aa|up_4|NZ_CP041010.1_696853_698101_+	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional	NA|269aa|up_3|NZ_CP041010.1_698365_699172_-	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]	NA|467aa|up_2|NZ_CP041010.1_699164_700565_-	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system	NA|192aa|up_1|NZ_CP041010.1_700579_701155_-	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism]	NA|40aa|up_0|NZ_CP041010.1_701518_701638_+	NA	NA|45aa|down_0|NZ_CP041010.1_701738_701873_-	NA	NA|432aa|down_1|NZ_CP041010.1_702024_703320_+	NA	NA|391aa|down_2|NZ_CP041010.1_703744_704917_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|181aa|down_3|NZ_CP041010.1_704970_705513_+	pfam05128, DUF697, Domain of unknown function (DUF697)	NA|89aa|down_4|NZ_CP041010.1_705666_705933_+	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional	NA|573aa|down_5|NZ_CP041010.1_705935_707654_+	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|78aa|down_6|NZ_CP041010.1_707890_708124_-	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile	NA|454aa|down_7|NZ_CP041010.1_708321_709683_+	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I	NA|340aa|down_8|NZ_CP041010.1_709679_710699_+	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion]	NA|221aa|down_9|NZ_CP041010.1_710831_711494_+	COG0569, TrkA, K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	8	832881-833067	2	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	GGCGGGGCCCCAACATAGA	19	3	27	832900-832936|832900-832936|832900-832936|832900-832936|832900-832936|832900-832936|832900-832936|832956-832992|832956-832992|832956-832992|832956-832992|832956-832992|832956-832992|832956-832992|832956-832992|832956-832992|833012-833048|833012-833048|833012-833048|833012-833048|833012-833048|833012-833048|833012-833048|833012-833048|833012-833048|833012-833048|833012-833048	NZ_CP041010.1_1519693-1519729|NZ_CP041010.1_1519807-1519843|NZ_CP041010.1_2234825-2234861|NZ_CP041010.1_517869-517833|NZ_CP041010.1_1328389-1328353|NZ_CP041010.1_1689710-1689674|NZ_CP041010.1_2489745-2489709|NZ_CP041010.1_473474-473438|NZ_CP041010.1_685389-685353|NZ_CP041010.1_1044561-1044597|NZ_CP041010.1_2956983-2957019|NZ_CP041010.1_1133087-1133051|NZ_CP041010.1_1328447-1328411|NZ_CP041010.1_2323250-2323214|NZ_CP041010.1_827656-827692|NZ_CP041010.1_833068-833104|NZ_CP041010.1_306911-306947|NZ_CP041010.1_426862-426898|NZ_CP041010.1_1044619-1044655|NZ_CP041010.1_2686603-2686639|NZ_CP041010.1_425928-425892|NZ_CP041010.1_473530-473494|NZ_CP041010.1_1133029-1132993|NZ_CP041010.1_1680420-1680384|NZ_CP041010.1_711586-711550|NZ_CP041010.1_2209578-2209542|NZ_CP041010.1_827712-827748	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|81aa|up_6|NZ_CP041010.1_827411_827654_+,NA|62aa|up_5|NZ_CP041010.1_827916_828102_-,NA|78aa|up_3|NZ_CP041010.1_830055_830289_-,NA|49aa|up_1|NZ_CP041010.1_832397_832544_+,NA|75aa|up_0|NZ_CP041010.1_832500_832725_+,NA|76aa|down_5|NZ_CP041010.1_840080_840308_+	NA|134aa|up_9|NZ_CP041010.1_824255_824657_-	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed	NA|166aa|up_8|NZ_CP041010.1_826093_826591_+	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal	NA|117aa|up_7|NZ_CP041010.1_826744_827095_+	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN	NA|81aa|up_6|NZ_CP041010.1_827411_827654_+	NA	NA|62aa|up_5|NZ_CP041010.1_827916_828102_-	NA	NA|391aa|up_4|NZ_CP041010.1_828213_829386_+	pfam00872, Transposase_mut, Transposase, Mutator family	NA|78aa|up_3|NZ_CP041010.1_830055_830289_-	NA	NA|320aa|up_2|NZ_CP041010.1_830765_831725_-	TIGR01002, synergohymenotropic_toxin, beta-channel forming cytolysin	NA|49aa|up_1|NZ_CP041010.1_832397_832544_+	NA	NA|75aa|up_0|NZ_CP041010.1_832500_832725_+	NA	NA|239aa|down_0|NZ_CP041010.1_833281_833998_-	PRK13350, PRK13350, superantigen-like protein; Reviewed	NA|242aa|down_1|NZ_CP041010.1_834925_835651_-	PRK13043, PRK13043, superantigen-like protein; Reviewed	NA|334aa|down_2|NZ_CP041010.1_836088_837090_+	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional	NA|311aa|down_3|NZ_CP041010.1_837112_838045_+	PRK12353, PRK12353, putative amino acid kinase; Reviewed	NA|502aa|down_4|NZ_CP041010.1_838267_839773_+	COG1288, COG1288, Predicted membrane protein [Function unknown]	NA|76aa|down_5|NZ_CP041010.1_840080_840308_+	NA	NA|316aa|down_6|NZ_CP041010.1_840612_841560_-	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family	NA|63aa|down_7|NZ_CP041010.1_841808_841997_+	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair]	NA|45aa|down_8|NZ_CP041010.1_842908_843043_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein	NA|45aa|down_9|NZ_CP041010.1_843099_843234_+	pfam05480, Staph_haemo, Staphylococcus haemolytic protein
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	9	1678912-1678990	7	CRISPRCasFinder	no	DEDDh	cas3,DEDDh,DinG,csa3,WYL	Unclear	TGTTGGGGCCCCGCCAACCTGCA	23	1	5	1678935-1678967|1678935-1678967|1678935-1678967|1678935-1678967|1678935-1678967	NZ_CP041010.1_473446-473478|NZ_CP041010.1_1328419-1328451|NZ_CP041010.1_2323222-2323254|NZ_CP041010.1_1044589-1044557|NZ_CP041010.1_1133059-1133091	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|92aa|up_6|NZ_CP041010.1_1673106_1673382_+,NA|129aa|up_1|NZ_CP041010.1_1677367_1677754_-,NA|138aa|down_1|NZ_CP041010.1_1680673_1681087_-,NA|37aa|down_2|NZ_CP041010.1_1681115_1681226_-,NA|31aa|down_6|NZ_CP041010.1_1684231_1684324_-	NA|419aa|up_9|NZ_CP041010.1_1671029_1672286_-	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29)	NA|67aa|up_8|NZ_CP041010.1_1672288_1672489_-	COG4840, COG4840, Uncharacterized protein conserved in bacteria [Function unknown]	NA|155aa|up_7|NZ_CP041010.1_1672635_1673100_+	cd16343, LMWPTP, Low molecular weight protein tyrosine phosphatase	NA|92aa|up_6|NZ_CP041010.1_1673106_1673382_+	NA	NA|406aa|up_5|NZ_CP041010.1_1673659_1674877_+	COG1295, Rbn, Ribonuclease BN family enzyme [Replication, recombination, and repair]	NA|210aa|up_4|NZ_CP041010.1_1674992_1675622_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|348aa|up_3|NZ_CP041010.1_1675611_1676655_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|234aa|up_2|NZ_CP041010.1_1676651_1677353_-	COG4758, COG4758, Predicted membrane protein [Function unknown]	NA|129aa|up_1|NZ_CP041010.1_1677367_1677754_-	NA	NA|253aa|up_0|NZ_CP041010.1_1677970_1678729_-	PRK05716, PRK05716, methionine aminopeptidase; Validated	NA|329aa|down_0|NZ_CP041010.1_1679256_1680243_+	COG4129, COG4129, Predicted membrane protein [Function unknown]	NA|138aa|down_1|NZ_CP041010.1_1680673_1681087_-	NA	NA|37aa|down_2|NZ_CP041010.1_1681115_1681226_-	NA	NA|244aa|down_3|NZ_CP041010.1_1681311_1682043_-	COG3442, COG3442, Predicted glutamine amidotransferase [General function prediction only]	NA|438aa|down_4|NZ_CP041010.1_1682044_1683358_-	COG0769, MurE, UDP-N-acetylmuramyl tripeptide synthase [Cell envelope biogenesis, outer membrane]	NA|167aa|down_5|NZ_CP041010.1_1683649_1684150_+	COG1528, Ftn, Ferritin-like protein [Inorganic ion transport and metabolism]	NA|31aa|down_6|NZ_CP041010.1_1684231_1684324_-	NA	DEDDh|185aa|down_7|NZ_CP041010.1_1684538_1685093_+	cd06130, DNA_pol_III_epsilon_like, an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III	NA|357aa|down_8|NZ_CP041010.1_1685160_1686231_-	PRK02406, PRK02406, DNA polymerase IV; Validated	NA|177aa|down_9|NZ_CP041010.1_1686477_1687008_-	pfam11667, DUF3267, Putative zincin peptidase
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	10	1918938-1919018	8	CRISPRCasFinder	no	csa3	cas3,DEDDh,DinG,csa3,WYL	Type I-A	TTACAACTTTAGTTGTTAGGGGCT	24	0	0	NA	NA	NA	1	1	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|77aa|up_5|NZ_CP041010.1_1913813_1914044_-,NA|364aa|up_0|NZ_CP041010.1_1917832_1918924_+,NA|35aa|down_0|NZ_CP041010.1_1919357_1919462_-,NA|31aa|down_2|NZ_CP041010.1_1921573_1921666_+	NA|237aa|up_9|NZ_CP041010.1_1909423_1910134_+	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase	NA|148aa|up_8|NZ_CP041010.1_1910254_1910698_-	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]	NA|138aa|up_7|NZ_CP041010.1_1910897_1911311_-	COG3011, COG3011, Predicted thiol-disulfide oxidoreductase [General function    prediction only]	NA|458aa|up_6|NZ_CP041010.1_1911768_1913142_-	pfam01878, EVE, EVE domain	NA|77aa|up_5|NZ_CP041010.1_1913813_1914044_-	NA	NA|313aa|up_4|NZ_CP041010.1_1914074_1915013_-	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism]	NA|222aa|up_3|NZ_CP041010.1_1915447_1916113_-	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5	csa3|107aa|up_2|NZ_CP041010.1_1916264_1916585_+	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors	NA|327aa|up_1|NZ_CP041010.1_1916586_1917567_+	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]	NA|364aa|up_0|NZ_CP041010.1_1917832_1918924_+	NA	NA|35aa|down_0|NZ_CP041010.1_1919357_1919462_-	NA	NA|379aa|down_1|NZ_CP041010.1_1920148_1921285_-	pfam02037, SAP, SAP domain	NA|31aa|down_2|NZ_CP041010.1_1921573_1921666_+	NA	NA|286aa|down_3|NZ_CP041010.1_1922370_1923228_-	COG0561, Cof, Predicted hydrolases of the HAD superfamily [General function prediction only]	NA|261aa|down_4|NZ_CP041010.1_1923295_1924078_-	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]	NA|602aa|down_5|NZ_CP041010.1_1924309_1926115_-	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase	NA|513aa|down_6|NZ_CP041010.1_1926795_1928334_+	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]	NA|711aa|down_7|NZ_CP041010.1_1928368_1930501_+	COG3711, BglG, Transcriptional antiterminator [Transcription]	NA|145aa|down_8|NZ_CP041010.1_1930512_1930947_+	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism]	NA|369aa|down_9|NZ_CP041010.1_1930946_1932053_+	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional
GCF_006364775.1_ASM636477v1	NZ_CP041010	Staphylococcus aureus strain FDAARGOS_766 chromosome, complete genome	11	2043038-2043231	3	CRT	no		cas3,DEDDh,DinG,csa3,WYL	Orphan	TGTTGGGGCCCCGCCAACTTGCA	23	3	10	2043061-2043093|2043061-2043093|2043061-2043093|2043061-2043093|2043117-2043152|2043117-2043152|2043117-2043152|2043176-2043208|2043176-2043208|2043176-2043208	NZ_CP041010.1_473446-473478|NZ_CP041010.1_1133059-1133091|NZ_CP041010.1_2323222-2323254|NZ_CP041010.1_1044589-1044557|NZ_CP041010.1_1519724-1519689|NZ_CP041010.1_1328358-1328393|NZ_CP041010.1_1689679-1689714|NZ_CP041010.1_473446-473478|NZ_CP041010.1_2323222-2323254|NZ_CP041010.1_1044589-1044557	NA	3	3	Orphan	cas3,DEDDh,DinG,csa3,WYL	NA|55aa|up_9|NZ_CP041010.1_2033564_2033729_+,NA|106aa|up_8|NZ_CP041010.1_2033973_2034291_+,NA|84aa|up_5|NZ_CP041010.1_2039415_2039667_+,NA|57aa|up_0|NZ_CP041010.1_2042807_2042978_+,NA	NA|55aa|up_9|NZ_CP041010.1_2033564_2033729_+	NA	NA|106aa|up_8|NZ_CP041010.1_2033973_2034291_+	NA	NA|1056aa|up_7|NZ_CP041010.1_2034477_2037645_-	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|422aa|up_6|NZ_CP041010.1_2037761_2039027_-	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis]	NA|84aa|up_5|NZ_CP041010.1_2039415_2039667_+	NA	NA|255aa|up_4|NZ_CP041010.1_2039658_2040423_-	pfam13468, Glyoxalase_3, Glyoxalase-like domain	NA|147aa|up_3|NZ_CP041010.1_2040585_2041026_+	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|404aa|up_2|NZ_CP041010.1_2041018_2042230_+	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily	NA|117aa|up_1|NZ_CP041010.1_2042331_2042682_-	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family	NA|57aa|up_0|NZ_CP041010.1_2042807_2042978_+	NA	NA|341aa|down_0|NZ_CP041010.1_2043372_2044395_-	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial	NA|200aa|down_1|NZ_CP041010.1_2044414_2045014_-	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed	NA|78aa|down_2|NZ_CP041010.1_2045020_2045254_-	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins	NA|149aa|down_3|NZ_CP041010.1_2045259_2045706_-	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism]	NA|162aa|down_4|NZ_CP041010.1_2045719_2046205_-	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]	NA|420aa|down_5|NZ_CP041010.1_2046201_2047461_-	cd00887, MoeA, MoeA family	NA|165aa|down_6|NZ_CP041010.1_2047523_2048018_+	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC	NA|169aa|down_7|NZ_CP041010.1_2048019_2048526_-	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism]	NA|335aa|down_8|NZ_CP041010.1_2048556_2049561_-	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated	NA|202aa|down_9|NZ_CP041010.1_2049730_2050336_-	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
