The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP034395	Herbaspirillum seropedicae strain AU13965 chromosome, complete genome	5349998	1460825	1468387	5349998	protease	Phage_21(16.67%)	7	NA	NA
WP_069373405.1|1460825_1462082_+	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	59.3	2.0e-11
WP_006463169.1|1462231_1462438_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	80.3	3.1e-23
WP_013233417.1|1462776_1463091_+|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	44.4	8.4e-12
WP_139970386.1|1463087_1465391_+|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	41.9	6.1e-168
WP_139970387.1|1465558_1466668_-|protease	M48 family metalloprotease	protease	NA	NA	NA	NA
WP_013233420.1|1466667_1467117_-	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	62.8	2.7e-48
WP_139970388.1|1467190_1468387_-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.6	6.6e-41
>prophage 2
NZ_CP034395	Herbaspirillum seropedicae strain AU13965 chromosome, complete genome	5349998	3216171	3226387	5349998		Bacillus_phage(28.57%)	9	NA	NA
WP_139971391.1|3216171_3216597_-	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	41.4	1.7e-20
WP_069374266.1|3216872_3217562_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_139971392.1|3217641_3219000_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	25.8	9.8e-25
WP_069374268.1|3219167_3220181_-	RNA polymerase sigma factor RpoS	NA	F4YCU2	Synechococcus_phage	33.9	4.6e-35
WP_139971393.1|3220184_3221183_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A1P8CWQ1	Bacillus_phage	42.4	4.3e-09
WP_013234921.1|3221410_3222376_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	48.4	2.2e-34
WP_041310929.1|3222372_3223110_-	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	56.7	4.0e-73
WP_139971394.1|3223194_3224142_-	flagellar brake protein	NA	NA	NA	NA	NA
WP_139971395.1|3224143_3226387_-	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	31.1	1.5e-83
>prophage 3
NZ_CP034395	Herbaspirillum seropedicae strain AU13965 chromosome, complete genome	5349998	3504379	3559728	5349998	transposase,tail,head,portal,terminase,integrase	Ralstonia_virus(22.73%)	67	3546080:3546096	3571128:3571144
WP_139971560.1|3504379_3505273_-	AAA family ATPase	NA	A0A1X9IGI7	Lactococcus_phage	30.7	1.3e-17
WP_139971561.1|3505908_3506313_+	PAAR domain-containing protein	NA	A4PE23	Ralstonia_virus	39.2	2.2e-12
WP_139971562.1|3506312_3506828_+	DUF4123 domain-containing protein	NA	A4PE24	Ralstonia_virus	46.4	2.3e-30
WP_139971563.1|3506811_3507165_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139972803.1|3507164_3507815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971564.1|3507822_3508551_+	hypothetical protein	NA	A4PE26	Ralstonia_virus	37.4	1.1e-27
WP_139971565.1|3508787_3509507_+	hypothetical protein	NA	A4PE26	Ralstonia_virus	35.9	3.3e-35
WP_139972804.1|3509626_3510328_+	hypothetical protein	NA	A4PE26	Ralstonia_virus	46.9	1.1e-38
WP_139971566.1|3510980_3511190_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_139971567.1|3511193_3511406_+	DUF4224 domain-containing protein	NA	NA	NA	NA	NA
WP_139971568.1|3511509_3511704_+	AlpA family phage regulatory protein	NA	A0A077K9Z8	Ralstonia_phage	80.3	2.5e-22
WP_139971569.1|3511700_3512498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139969309.1|3512710_3513891_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	40.7	2.0e-53
WP_139971570.1|3514082_3514370_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971571.1|3514463_3515207_-	DUF1828 domain-containing protein	NA	A4JX42	Burkholderia_virus	36.9	2.8e-42
WP_139971572.1|3515200_3515647_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971573.1|3517293_3518136_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139972805.1|3518334_3518523_-	diguanylate cyclase	NA	NA	NA	NA	NA
WP_139971574.1|3519139_3520135_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA	NA
WP_139971575.1|3520544_3521699_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_139971576.1|3522463_3523579_+	acyltransferase family protein	NA	A0A2H4JA46	uncultured_Caudovirales_phage	26.2	8.1e-09
WP_139972806.1|3523638_3524271_-	hypothetical protein	NA	A0A0A8ILA9	Aurantimonas_phage	38.9	5.4e-26
WP_139971577.1|3524350_3525004_-|head	head decoration protein	head	NA	NA	NA	NA
WP_139971578.1|3525034_3525649_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971579.1|3525669_3526566_-	S49 family peptidase	NA	A0A2D1GN02	Marinobacter_phage	44.0	4.0e-51
WP_139971580.1|3526562_3528209_-|portal	phage portal protein	portal	A0A291AUL8	Sinorhizobium_phage	34.7	2.1e-77
WP_139971581.1|3528208_3528472_-|head,tail	phage head-tail adapter protein	head,tail	NA	NA	NA	NA
WP_139971582.1|3528474_3528699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971583.1|3528707_3530825_-|terminase	terminase	terminase	K4I3Y9	Acidithiobacillus_phage	37.9	1.0e-100
WP_139971584.1|3530763_3531378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139972807.1|3531419_3531854_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971585.1|3532041_3532704_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971586.1|3532879_3533179_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971587.1|3534080_3534449_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971588.1|3534457_3535012_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971589.1|3535008_3535305_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971590.1|3535307_3536315_-	AAA family ATPase	NA	Q5G8S8	Enterobacteria_phage	38.5	6.1e-48
WP_139971591.1|3536236_3536710_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971592.1|3536706_3537759_-	replication protein	NA	A0A1P8DTG2	Proteus_phage	40.4	7.4e-12
WP_139971593.1|3537867_3538104_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971594.1|3538147_3538423_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971595.1|3538534_3538756_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971596.1|3538879_3539086_+	KTSC domain-containing protein	NA	D2IZW7	Enterococcus_phage	50.0	1.8e-07
WP_139971597.1|3539070_3539340_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971598.1|3539333_3539579_-	helix-turn-helix domain-containing protein	NA	A0A0R6PIJ0	Moraxella_phage	35.2	6.3e-07
WP_139971599.1|3539674_3540403_+	S24 family peptidase	NA	NA	NA	NA	NA
WP_139971600.1|3540835_3541129_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971601.1|3541156_3541636_-	Arc family DNA-binding protein	NA	NA	NA	NA	NA
WP_139971602.1|3541756_3541945_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971603.1|3542018_3542264_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971604.1|3542260_3542956_+	Rha family transcriptional regulator	NA	A0A192Y918	Salmonella_phage	54.9	2.8e-23
WP_139971605.1|3542952_3543249_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971606.1|3543245_3543455_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971607.1|3543451_3543700_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971608.1|3543696_3544374_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971609.1|3544536_3546225_+	recombinase family protein	NA	R9TP69	Rhizobium_phage	30.6	4.5e-51
3546080:3546096	attL	TGGTTGCGGGGGCAGGA	NA	NA	NA	NA
WP_139971610.1|3547518_3547713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971611.1|3547725_3548499_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971612.1|3548611_3550444_-	UvrD-helicase domain-containing protein	NA	A0A068EQC7	Bacillus_phage	26.5	7.5e-44
WP_139971613.1|3550443_3552297_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_139971614.1|3552445_3552685_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139971615.1|3553003_3553435_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971616.1|3553523_3554954_+	DUF2971 domain-containing protein	NA	NA	NA	NA	NA
WP_139971617.1|3555033_3556917_-	type IV secretion system DNA-binding domain-containing protein	NA	NA	NA	NA	NA
WP_139971618.1|3557110_3557704_+	hypothetical protein	NA	NA	NA	NA	NA
WP_139971619.1|3557738_3558170_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_139971620.1|3558531_3559728_+|integrase	tyrosine-type recombinase/integrase	integrase	W6MYA3	Pseudomonas_phage	31.1	3.4e-21
3571128:3571144	attR	TGGTTGCGGGGGCAGGA	NA	NA	NA	NA
>prophage 4
NZ_CP034395	Herbaspirillum seropedicae strain AU13965 chromosome, complete genome	5349998	4630791	4640537	5349998		Synechococcus_phage(42.86%)	9	NA	NA
WP_139972858.1|4630791_4632228_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	27.4	1.5e-44
WP_139972859.1|4632243_4633341_+	GDP-mannose 4,6-dehydratase	NA	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	70.2	7.9e-142
WP_139972249.1|4633346_4634285_+	NAD-dependent epimerase/dehydratase family protein	NA	M4R1H4	Synechococcus_phage	35.7	2.6e-53
WP_139972250.1|4634274_4635441_+	aminotransferase class V-fold PLP-dependent enzyme	NA	A0A0E3G2F3	Synechococcus_phage	35.1	2.3e-46
WP_139972251.1|4635444_4636218_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_139972252.1|4636214_4637306_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	26.0	3.6e-17
WP_139972253.1|4637321_4638644_+	lipopolysaccharide biosynthesis protein RfbH	NA	A0A0P0YLZ6	Yellowstone_lake_phycodnavirus	35.7	1.1e-47
WP_139972254.1|4638684_4639734_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_139972255.1|4639730_4640537_+	transketolase	NA	G9E5U1	Micromonas_pusilla_virus	31.3	3.3e-12
>prophage 5
NZ_CP034395	Herbaspirillum seropedicae strain AU13965 chromosome, complete genome	5349998	4850845	4863841	5349998	tRNA	Escherichia_phage(30.0%)	13	NA	NA
WP_139972363.1|4850845_4851139_+	type II toxin-antitoxin system HigB family toxin	NA	A0A0P0ZE17	Stx2-converting_phage	45.6	1.5e-15
WP_139972866.1|4851156_4851549_+	helix-turn-helix domain-containing protein	NA	A0A0P0ZCT8	Stx2-converting_phage	42.4	4.4e-18
WP_139972364.1|4851635_4852268_-	YitT family protein	NA	NA	NA	NA	NA
WP_139972365.1|4852260_4853451_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA	NA
WP_139972366.1|4853891_4854815_+	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	33.6	1.2e-05
WP_139972367.1|4854992_4855955_+|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	69.9	1.6e-98
WP_041312352.1|4856379_4857456_+	CDP-glucose 4,6-dehydratase	NA	A0A0E3FNQ3	Synechococcus_phage	30.6	4.3e-07
WP_013236329.1|4857510_4858521_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L1R4	Tupanvirus	43.4	5.0e-82
WP_139972368.1|4858535_4859552_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	46.2	1.8e-79
WP_139972369.1|4859548_4860094_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.1	9.3e-43
WP_013236333.1|4860614_4861613_+	kinase	NA	NA	NA	NA	NA
WP_139972370.1|4861612_4862602_+	NAD-dependent epimerase/dehydratase family protein	NA	M1HWW2	Paramecium_bursaria_Chlorella_virus	45.3	2.1e-80
WP_139972371.1|4862668_4863841_+	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase	NA	A0A1D8KU11	Synechococcus_phage	39.4	3.0e-62
>prophage 1
NZ_CP034394	Herbaspirillum seropedicae strain AU13965 plasmid unnamed, complete sequence	42977	15101	24739	42977	terminase,portal	Thermoanaerobacterium_phage(42.86%)	9	NA	NA
WP_139969264.1|15101_16619_-	hypothetical protein	NA	I3VYW7	Thermoanaerobacterium_phage	27.7	3.1e-27
WP_139969265.1|16722_18024_-	hypothetical protein	NA	I3VYW8	Thermoanaerobacterium_phage	38.9	7.0e-20
WP_139969266.1|18025_20320_-|portal	phage portal protein	portal	I3VYW9	Thermoanaerobacterium_phage	32.8	1.3e-61
WP_139969267.1|20326_20620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_139969268.1|20616_22047_-|terminase	phage terminase large subunit	terminase	J7I460	Acinetobacter_phage	61.9	3.9e-157
WP_139969269.1|22049_22769_-|terminase	terminase small subunit	terminase	I6NV32	Burkholderia_virus	46.5	1.6e-53
WP_139969270.1|22985_23603_-	hypothetical protein	NA	Q3HR05	Burkholderia_phage	37.4	1.4e-18
WP_139969271.1|23642_24131_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA	NA
WP_139969272.1|24190_24739_-	hypothetical protein	NA	K4K4C3	Caulobacter_virus	56.8	3.4e-16
