assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006542645.1_Aond_1.0	NZ_AP019734	Alistipes onderdonkii subsp. vulgaris strain 3BBH6	1	1177915-1178040	1	CRISPRCasFinder	no		WYL,DEDDh,cas3,RT,PrimPol	Orphan	GCAAAGATAGTGCAAGCCGAGTGCAGATGCAAGCTCTGC	39	0	0	NA	NA	NA	1	1	Orphan	WYL,DEDDh,cas3,RT,PrimPol	NA,NA|373aa|down_0|NZ_AP019734.1_1178122_1179241_-	NA|241aa|up_9|NZ_AP019734.1_1167469_1168192_-	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|752aa|up_8|NZ_AP019734.1_1168175_1170431_-	PRK05580, PRK05580, primosome assembly protein PriA; Validated	NA|299aa|up_7|NZ_AP019734.1_1170430_1171327_-	COG1284, COG1284, Uncharacterized conserved protein [Function unknown]	NA|319aa|up_6|NZ_AP019734.1_1171338_1172295_-	COG1242, COG1242, Predicted Fe-S oxidoreductase [General function prediction only]	NA|502aa|up_5|NZ_AP019734.1_1172297_1173803_-	pfam01223, Endonuclease_NS, DNA/RNA non-specific endonuclease	NA|152aa|up_4|NZ_AP019734.1_1173815_1174271_-	pfam02580, Tyr_Deacylase, D-Tyr-tRNA(Tyr) deacylase	NA|229aa|up_3|NZ_AP019734.1_1174283_1174970_-	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis]	NA|152aa|up_2|NZ_AP019734.1_1175000_1175456_-	TIGR01354, Cytidine_deaminase, cytidine deaminase, homotetrameric	NA|230aa|up_1|NZ_AP019734.1_1175613_1176303_-	COG2968, COG2968, Uncharacterized conserved protein [Function unknown]	NA|470aa|up_0|NZ_AP019734.1_1176489_1177899_-	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]	NA|373aa|down_0|NZ_AP019734.1_1178122_1179241_-	NA	NA|275aa|down_1|NZ_AP019734.1_1179285_1180110_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|223aa|down_2|NZ_AP019734.1_1180263_1180932_+	cd06262, metallo-hydrolase-like_MBL-fold, mainly hydrolytic enzymes and related proteins which carry out various biological functions; MBL-fold metallohydrolase domain	NA|424aa|down_3|NZ_AP019734.1_1180938_1182210_+	cd09603, M1_APN_like, Peptidase M1 family similar to aminopeptidase N catalytic domain	NA|244aa|down_4|NZ_AP019734.1_1182225_1182957_+	TIGR01444, 2-O-methyltransferase_NoeI, methyltransferase, FkbM family	NA|226aa|down_5|NZ_AP019734.1_1182946_1183624_+	PRK00026, trmD, tRNA (guanine-N(1)-)-methyltransferase; Reviewed	NA|344aa|down_6|NZ_AP019734.1_1183633_1184665_+	cd07493, Peptidases_S8_9, Peptidase S8 family domain, uncharacterized subfamily 9	NA|380aa|down_7|NZ_AP019734.1_1184661_1185801_+	PRK00025, lpxB, lipid-A-disaccharide synthase; Reviewed	NA|104aa|down_8|NZ_AP019734.1_1185810_1186122_+	pfam12650, DUF3784, Domain of unknown function (DUF3784)	NA|212aa|down_9|NZ_AP019734.1_1186142_1186778_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]
GCF_006542645.1_Aond_1.0	NZ_AP019734	Alistipes onderdonkii subsp. vulgaris strain 3BBH6	2	1253727-1253909	1	PILER-CR	no		WYL,DEDDh,cas3,RT,PrimPol	Orphan	AAACAAAAAACGCAAAAATGGTAACACACA	30	0	0	NA	NA	NA	2	2	Orphan	WYL,DEDDh,cas3,RT,PrimPol	NA|157aa|up_9|NZ_AP019734.1_1244100_1244571_+,NA|114aa|up_8|NZ_AP019734.1_1244572_1244914_+,NA|215aa|up_6|NZ_AP019734.1_1247327_1247972_+,NA|351aa|up_5|NZ_AP019734.1_1247968_1249021_+,NA|108aa|up_3|NZ_AP019734.1_1249646_1249970_+,NA|84aa|down_2|NZ_AP019734.1_1257346_1257598_-	NA|157aa|up_9|NZ_AP019734.1_1244100_1244571_+	NA	NA|114aa|up_8|NZ_AP019734.1_1244572_1244914_+	NA	NA|793aa|up_7|NZ_AP019734.1_1244917_1247296_+	TIGR03783, Bac_Flav_CT_G, Bacteroides conjugation system ATPase, TraG family	NA|215aa|up_6|NZ_AP019734.1_1247327_1247972_+	NA	NA|351aa|up_5|NZ_AP019734.1_1247968_1249021_+	NA	NA|205aa|up_4|NZ_AP019734.1_1249027_1249642_+	TIGR03781, Bac_Flav_CT_K, Bacteroides conjugative transposon TraK protein	NA|108aa|up_3|NZ_AP019734.1_1249646_1249970_+	NA	NA|341aa|up_2|NZ_AP019734.1_1250344_1251367_+	pfam12508, Transposon_TraM, Conjugative transposon, TraM	NA|286aa|up_1|NZ_AP019734.1_1251394_1252252_+	pfam13595, DUF4138, Domain of unknown function (DUF4138)	NA|298aa|up_0|NZ_AP019734.1_1252391_1253285_-	pfam02661, Fic, Fic/DOC family	NA|583aa|down_0|NZ_AP019734.1_1254393_1256142_-	COG0270, Dcm, Site-specific DNA methylase [DNA replication, recombination, and repair]	NA|111aa|down_1|NZ_AP019734.1_1256204_1256537_-	TIGR00392, Isoleucine--tRNA_ligase, isoleucyl-tRNA synthetase	NA|84aa|down_2|NZ_AP019734.1_1257346_1257598_-	NA	NA|195aa|down_3|NZ_AP019734.1_1258625_1259210_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|317aa|down_4|NZ_AP019734.1_1259412_1260363_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|1113aa|down_5|NZ_AP019734.1_1260519_1263858_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|527aa|down_6|NZ_AP019734.1_1263863_1265444_+	pfam12741, SusD-like, Susd and RagB outer membrane lipoprotein	NA|306aa|down_7|NZ_AP019734.1_1265453_1266371_+	pfam16141, DUF4849, Putative glycoside hydrolase Family 18, chitinase_18	NA|422aa|down_8|NZ_AP019734.1_1266379_1267645_+	pfam08522, DUF1735, Domain of unknown function (DUF1735)	NA|510aa|down_9|NZ_AP019734.1_1267662_1269192_+	cd06542, GH18_EndoS-like, Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins
GCF_006542645.1_Aond_1.0	NZ_AP019734	Alistipes onderdonkii subsp. vulgaris strain 3BBH6	3	3066354-3066634	2	CRISPRCasFinder	no		WYL,DEDDh,cas3,RT,PrimPol	Orphan	ATTTTCGGAGAGATCGAGCGCAGTCAAT	28	0	0	NA	NA	NA	4	4	Orphan	WYL,DEDDh,cas3,RT,PrimPol	NA|190aa|up_6|NZ_AP019734.1_3054815_3055385_+,NA|248aa|up_5|NZ_AP019734.1_3055502_3056246_-,NA	NA|298aa|up_9|NZ_AP019734.1_3051600_3052494_-	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain	NA|354aa|up_8|NZ_AP019734.1_3052923_3053985_-	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain	NA|159aa|up_7|NZ_AP019734.1_3054326_3054803_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|190aa|up_6|NZ_AP019734.1_3054815_3055385_+	NA	NA|248aa|up_5|NZ_AP019734.1_3055502_3056246_-	NA	NA|357aa|up_4|NZ_AP019734.1_3056245_3057316_-	COG1493, HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]	NA|605aa|up_3|NZ_AP019734.1_3057319_3059134_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|1048aa|up_2|NZ_AP019734.1_3059135_3062279_-	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|236aa|up_1|NZ_AP019734.1_3062386_3063094_+	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|960aa|up_0|NZ_AP019734.1_3063180_3066060_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|356aa|down_0|NZ_AP019734.1_3067108_3068176_-	NF033187, internalin_J, class 1 internalin InlJ	NA|417aa|down_1|NZ_AP019734.1_3068210_3069461_-	NF033187, internalin_J, class 1 internalin InlJ	NA|470aa|down_2|NZ_AP019734.1_3069457_3070867_-	NF033187, internalin_J, class 1 internalin InlJ	NA|279aa|down_3|NZ_AP019734.1_3070953_3071790_-	cd07505, HAD_BPGM-like, beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|139aa|down_4|NZ_AP019734.1_3071796_3072213_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|317aa|down_5|NZ_AP019734.1_3072224_3073175_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|333aa|down_6|NZ_AP019734.1_3073176_3074175_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|874aa|down_7|NZ_AP019734.1_3074274_3076896_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|509aa|down_8|NZ_AP019734.1_3076921_3078448_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|428aa|down_9|NZ_AP019734.1_3078694_3079978_+	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain
GCF_006542645.1_Aond_1.0	NZ_AP019734	Alistipes onderdonkii subsp. vulgaris strain 3BBH6	4	3067322-3067664	3	CRISPRCasFinder	no		WYL,DEDDh,cas3,RT,PrimPol	Orphan	ATTTTCGGAGAGATCGAGCGCAGTCAAT	28	0	0	NA	NA	NA	5	5	Orphan	WYL,DEDDh,cas3,RT,PrimPol	NA|190aa|up_7|NZ_AP019734.1_3054815_3055385_+,NA|248aa|up_6|NZ_AP019734.1_3055502_3056246_-,NA|161aa|down_9|NZ_AP019734.1_3080179_3080662_-	NA|354aa|up_9|NZ_AP019734.1_3052923_3053985_-	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain	NA|159aa|up_8|NZ_AP019734.1_3054326_3054803_+	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family	NA|190aa|up_7|NZ_AP019734.1_3054815_3055385_+	NA	NA|248aa|up_6|NZ_AP019734.1_3055502_3056246_-	NA	NA|357aa|up_5|NZ_AP019734.1_3056245_3057316_-	COG1493, HprK, Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]	NA|605aa|up_4|NZ_AP019734.1_3057319_3059134_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|1048aa|up_3|NZ_AP019734.1_3059135_3062279_-	COG1074, RecB, ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) [DNA replication, recombination, and repair]	NA|236aa|up_2|NZ_AP019734.1_3062386_3063094_+	pfam10988, DUF2807, Putative auto-transporter adhesin, head GIN domain	NA|960aa|up_1|NZ_AP019734.1_3063180_3066060_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|258aa|up_0|NZ_AP019734.1_3066155_3066929_-	NF033187, internalin_J, class 1 internalin InlJ	NA|417aa|down_0|NZ_AP019734.1_3068210_3069461_-	NF033187, internalin_J, class 1 internalin InlJ	NA|470aa|down_1|NZ_AP019734.1_3069457_3070867_-	NF033187, internalin_J, class 1 internalin InlJ	NA|279aa|down_2|NZ_AP019734.1_3070953_3071790_-	cd07505, HAD_BPGM-like, beta-phosphoglucomutase-like family of the haloacid dehalogenase-like (HAD) hydrolase superfamily	NA|139aa|down_3|NZ_AP019734.1_3071796_3072213_-	COG2315, MmcQ, Uncharacterized protein conserved in bacteria [Function unknown]	NA|317aa|down_4|NZ_AP019734.1_3072224_3073175_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|333aa|down_5|NZ_AP019734.1_3073176_3074175_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|874aa|down_6|NZ_AP019734.1_3074274_3076896_+	PRK00252, alaS, alanyl-tRNA synthetase; Reviewed	NA|509aa|down_7|NZ_AP019734.1_3076921_3078448_+	PRK05434, PRK05434, 2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA|428aa|down_8|NZ_AP019734.1_3078694_3079978_+	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain	NA|161aa|down_9|NZ_AP019734.1_3080179_3080662_-	NA
