assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	1	43291-43461	1	PILER-CR	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	TGCACTCGGCTTAATCGTATCTTTGGCTGACGCC	34	1	1	43401-43450	NZ_AP019739.1_43527-43576	NA	2	2	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|67aa|up_4|NZ_AP019739.1_38936_39137_+,NA|62aa|down_1|NZ_AP019739.1_45152_45338_+,NA|209aa|down_4|NZ_AP019739.1_46994_47621_+	NA|451aa|up_9|NZ_AP019739.1_32144_33497_+	COG0771, MurD, UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]	NA|428aa|up_8|NZ_AP019739.1_33563_34847_+	TIGR02614, Putative_lipid_II_flippase_FtsW, cell division protein FtsW	NA|345aa|up_7|NZ_AP019739.1_34836_35871_+	pfam01757, Acyl_transf_3, Acyltransferase family	NA|337aa|up_6|NZ_AP019739.1_35865_36876_-	COG2855, COG2855, Predicted membrane protein [Function unknown]	NA|331aa|up_5|NZ_AP019739.1_37205_38198_+	COG0039, Mdh, Malate/lactate dehydrogenases [Energy production and conversion]	NA|67aa|up_4|NZ_AP019739.1_38936_39137_+	NA	NA|128aa|up_3|NZ_AP019739.1_39283_39667_+	pfam16962, ABC_export, Putative ABC exporter	NA|588aa|up_2|NZ_AP019739.1_39733_41497_-	TIGR00644, recJ, single-stranded-DNA-specific exonuclease RecJ	NA|227aa|up_1|NZ_AP019739.1_41502_42183_-	cd16444, LipB, lipoyl/octanoyl transferase	NA|301aa|up_0|NZ_AP019739.1_42262_43165_-	PRK05481, PRK05481, lipoyl synthase; Provisional	NA|500aa|down_0|NZ_AP019739.1_43640_45140_+	cd13128, MATE_Wzx_like, Wzx, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|62aa|down_1|NZ_AP019739.1_45152_45338_+	NA	NA|382aa|down_2|NZ_AP019739.1_45344_46490_+	TIGR00678, DNA_polymerase_III_subunit_delta', DNA polymerase III, delta' subunit	NA|166aa|down_3|NZ_AP019739.1_46500_46998_+	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|209aa|down_4|NZ_AP019739.1_46994_47621_+	NA	NA|698aa|down_5|NZ_AP019739.1_47617_49711_+	pfam13205, Big_5, Bacterial Ig-like domain	NA|271aa|down_6|NZ_AP019739.1_49720_50533_+	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain	NA|118aa|down_7|NZ_AP019739.1_50539_50893_+	pfam02033, RBFA, Ribosome-binding factor A	NA|410aa|down_8|NZ_AP019739.1_50905_52135_+	COG4591, LolE, ABC-type transport system, involved in lipoprotein release, permease component [Cell envelope biogenesis, outer membrane]	NA|291aa|down_9|NZ_AP019739.1_52193_53066_+	pfam14129, DUF4296, Domain of unknown function (DUF4296)
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	2	113127-113226	1	CRISPRCasFinder	no	cas3	cas3,RT,DEDDh,WYL,PD-DExK	Unclear	CTCGGCTTAACGAAAACGGTGAAT	24	0	0	NA	NA	NA	1	1	Unclear	cas3,RT,DEDDh,WYL,PD-DExK	NA|320aa|up_3|NZ_AP019739.1_106701_107661_+,NA|312aa|down_2|NZ_AP019739.1_114880_115816_+,NA|168aa|down_3|NZ_AP019739.1_115958_116462_-,NA|161aa|down_4|NZ_AP019739.1_116475_116958_-	NA|680aa|up_9|NZ_AP019739.1_99678_101718_+	COG3250, LacZ, Beta-galactosidase/beta-glucuronidase [Carbohydrate transport and metabolism]	NA|200aa|up_8|NZ_AP019739.1_101641_102241_-	pfam08889, WbqC, WbqC-like protein family	NA|374aa|up_7|NZ_AP019739.1_102363_103485_+	COG1835, COG1835, Predicted acyltransferases [Lipid metabolism]	NA|495aa|up_6|NZ_AP019739.1_103494_104979_-	PRK02048, PRK02048, 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional	NA|144aa|up_5|NZ_AP019739.1_105057_105489_+	TIGR04134, hypothetical_protein, putative lipoprotein, rSAM/lipoprotein system	NA|360aa|up_4|NZ_AP019739.1_105490_106570_+	TIGR04133, coenzyme_PQQ_synthesis_protein_E, radical SAM enzyme, rSAM/lipoprotein system	NA|320aa|up_3|NZ_AP019739.1_106701_107661_+	NA	NA|410aa|up_2|NZ_AP019739.1_107665_108895_+	pfam09411, PagL, Lipid A 3-O-deacylase (PagL)	NA|585aa|up_1|NZ_AP019739.1_109162_110917_+	pfam13320, DUF4091, Domain of unknown function (DUF4091)	cas3|704aa|up_0|NZ_AP019739.1_110924_113036_+	PRK10917, PRK10917, ATP-dependent DNA helicase RecG; Provisional	NA|266aa|down_0|NZ_AP019739.1_113246_114044_+	pfam11306, DUF3108, Protein of unknown function (DUF3108)	NA|261aa|down_1|NZ_AP019739.1_114046_114829_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|312aa|down_2|NZ_AP019739.1_114880_115816_+	NA	NA|168aa|down_3|NZ_AP019739.1_115958_116462_-	NA	NA|161aa|down_4|NZ_AP019739.1_116475_116958_-	NA	NA|466aa|down_5|NZ_AP019739.1_116977_118375_-	pfam01640, Peptidase_C10, Peptidase C10 family	NA|289aa|down_6|NZ_AP019739.1_118514_119381_-	cd16422, HAD_Pase_UmpH-like, uncharacterized subfamily of the UmpH/NagD phosphatase family, belongs to the haloacid dehalogenase-like superfamily	NA|515aa|down_7|NZ_AP019739.1_119696_121241_-	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase	NA|600aa|down_8|NZ_AP019739.1_121344_123144_-	pfam07980, SusD_RagB, SusD family	NA|1100aa|down_9|NZ_AP019739.1_123157_126457_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	3	308395-308505	2	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	GTCTCGGCATAATCGAACATAAATGTTTGCTTCTGC	36	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA,NA|271aa|down_4|NZ_AP019739.1_313966_314779_-,NA|302aa|down_9|NZ_AP019739.1_320366_321272_-	NA|188aa|up_9|NZ_AP019739.1_295954_296518_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|510aa|up_8|NZ_AP019739.1_296528_298058_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|417aa|up_7|NZ_AP019739.1_298205_299456_+	PRK00885, PRK00885, phosphoribosylamine--glycine ligase; Provisional	NA|286aa|up_6|NZ_AP019739.1_299460_300318_+	PRK14190, PRK14190, bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional	NA|131aa|up_5|NZ_AP019739.1_300472_300865_-	pfam11026, DUF2721, Protein of unknown function (DUF2721)	NA|277aa|up_4|NZ_AP019739.1_301184_302015_+	pfam09992, NAGPA, Phosphodiester glycosidase	NA|535aa|up_3|NZ_AP019739.1_302377_303982_+	PRK09344, PRK09344, phosphoenolpyruvate carboxykinase	NA|296aa|up_2|NZ_AP019739.1_304724_305612_+	pfam12833, HTH_18, Helix-turn-helix domain	NA|459aa|up_1|NZ_AP019739.1_305670_307047_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|333aa|up_0|NZ_AP019739.1_307213_308212_-	PRK07084, PRK07084, class II fructose-1,6-bisphosphate aldolase	NA|538aa|down_0|NZ_AP019739.1_308754_310368_+	PRK15389, PRK15389, fumarate hydratase; Provisional	NA|603aa|down_1|NZ_AP019739.1_310525_312334_+	pfam13584, BatD, Oxygen tolerance	NA|281aa|down_2|NZ_AP019739.1_312340_313183_+	sd00006, TPR, Tetratricopeptide repeat	NA|199aa|down_3|NZ_AP019739.1_313241_313838_+	PRK00076, recR, recombination protein RecR; Reviewed	NA|271aa|down_4|NZ_AP019739.1_313966_314779_-	NA	NA|449aa|down_5|NZ_AP019739.1_315092_316439_-	cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily, Fusobacterium nucleatum Tyt1-like; solute-binding domain	NA|118aa|down_6|NZ_AP019739.1_316647_317001_-	pfam02152, FolB, Dihydroneopterin aldolase	NA|431aa|down_7|NZ_AP019739.1_317065_318358_-	PRK05912, PRK05912, tyrosyl-tRNA synthetase; Validated	NA|636aa|down_8|NZ_AP019739.1_318391_320299_-	PRK14971, PRK14971, DNA polymerase III subunit gamma/tau	NA|302aa|down_9|NZ_AP019739.1_320366_321272_-	NA
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	4	596875-596985	3	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	CGTTCGGCTCTGCACTCGACTTAACGAAATGGTT	34	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|135aa|up_6|NZ_AP019739.1_588283_588688_-,NA|147aa|up_2|NZ_AP019739.1_592913_593354_-,NA|969aa|up_1|NZ_AP019739.1_593376_596283_-,NA|302aa|down_5|NZ_AP019739.1_603838_604744_-,NA|229aa|down_6|NZ_AP019739.1_604773_605460_-	NA|108aa|up_9|NZ_AP019739.1_584994_585318_+	pfam01192, RNA_pol_Rpb6, RNA polymerase Rpb6	NA|399aa|up_8|NZ_AP019739.1_585346_586543_+	PRK05579, PRK05579, bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated	NA|549aa|up_7|NZ_AP019739.1_586547_588194_+	COG0497, RecN, ATPase involved in DNA repair [DNA replication, recombination, and repair]	NA|135aa|up_6|NZ_AP019739.1_588283_588688_-	NA	NA|334aa|up_5|NZ_AP019739.1_588826_589828_-	PRK14874, PRK14874, aspartate-semialdehyde dehydrogenase; Provisional	NA|159aa|up_4|NZ_AP019739.1_589962_590439_-	COG1247, COG1247, Sortase and related acyltransferases [Cell envelope biogenesis, outer membrane]	NA|770aa|up_3|NZ_AP019739.1_590465_592775_-	COG5009, MrcA, Membrane carboxypeptidase/penicillin-binding protein [Cell envelope biogenesis, outer membrane]	NA|147aa|up_2|NZ_AP019739.1_592913_593354_-	NA	NA|969aa|up_1|NZ_AP019739.1_593376_596283_-	NA	NA|105aa|up_0|NZ_AP019739.1_596467_596782_-	cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH	NA|355aa|down_0|NZ_AP019739.1_597416_598481_+	pfam14491, DUF4435, Protein of unknown function (DUF4435)	NA|197aa|down_1|NZ_AP019739.1_598530_599121_-	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|448aa|down_2|NZ_AP019739.1_599163_600507_-	PRK01642, cls, cardiolipin synthetase; Reviewed	NA|159aa|down_3|NZ_AP019739.1_600678_601155_+	PRK00226, greA, transcription elongation factor GreA; Reviewed	NA|740aa|down_4|NZ_AP019739.1_601546_603766_-	pfam00930, DPPIV_N, Dipeptidyl peptidase IV (DPP IV) N-terminal region	NA|302aa|down_5|NZ_AP019739.1_603838_604744_-	NA	NA|229aa|down_6|NZ_AP019739.1_604773_605460_-	NA	NA|333aa|down_7|NZ_AP019739.1_605619_606618_-	COG1705, FlgJ, Muramidase (flagellum-specific) [Cell motility and secretion / Intracellular trafficking and secretion]	NA|202aa|down_8|NZ_AP019739.1_606696_607302_+	pfam14063, DUF4254, Protein of unknown function (DUF4254)	NA|349aa|down_9|NZ_AP019739.1_607285_608332_+	cd03789, GT9_LPS_heptosyltransferase, lipopolysaccharide heptosyltransferase and similar proteins
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	5	677861-677969	4	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	AAAAGCAAATGAAATTTGCATTGCACTCGGCTTA	34	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|207aa|up_6|NZ_AP019739.1_668984_669605_-,NA	NA|352aa|up_9|NZ_AP019739.1_666080_667136_-	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|346aa|up_8|NZ_AP019739.1_667138_668176_-	PRK00892, lpxD, UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional	NA|156aa|up_7|NZ_AP019739.1_668205_668673_-	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional	NA|207aa|up_6|NZ_AP019739.1_668984_669605_-	NA	NA|255aa|up_5|NZ_AP019739.1_669727_670492_-	pfam01063, Aminotran_4, Amino-transferase class IV	NA|357aa|up_4|NZ_AP019739.1_670504_671575_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|447aa|up_3|NZ_AP019739.1_671577_672918_-	TIGR02432, tRNAIle-lysidine_synthase, tRNA(Ile)-lysidine synthetase, N-terminal domain	NA|336aa|up_2|NZ_AP019739.1_673100_674108_-	PRK00046, murB, UDP-N-acetylmuramate dehydrogenase	NA|478aa|up_1|NZ_AP019739.1_674366_675800_+	pfam14134, DUF4301, Domain of unknown function (DUF4301)	NA|479aa|up_0|NZ_AP019739.1_675895_677332_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|205aa|down_0|NZ_AP019739.1_678032_678647_+	PRK01558, PRK01558, V-type ATP synthase subunit E; Provisional	NA|278aa|down_1|NZ_AP019739.1_678654_679488_+	pfam10962, DUF2764, Protein of unknown function (DUF2764)	NA|586aa|down_2|NZ_AP019739.1_679494_681252_+	PRK04192, PRK04192, V-type ATP synthase subunit A; Provisional	NA|440aa|down_3|NZ_AP019739.1_681262_682582_+	PRK02118, PRK02118, V-type ATP synthase subunit B; Provisional	NA|203aa|down_4|NZ_AP019739.1_682588_683197_+	PRK02195, PRK02195, V-type ATP synthase subunit D; Provisional	NA|608aa|down_5|NZ_AP019739.1_683205_685029_+	PRK05771, PRK05771, V-type ATP synthase subunit I; Validated	NA|144aa|down_6|NZ_AP019739.1_685074_685506_+	PRK06558, PRK06558, V-type ATP synthase subunit K; Validated	NA|382aa|down_7|NZ_AP019739.1_685646_686792_+	pfam01837, HcyBio, Homocysteine biosynthesis enzyme, sulfur-incorporation	NA|138aa|down_8|NZ_AP019739.1_686812_687226_+	smart00930, NIL, This domain is found at the C-terminus of ABC transporter proteins involved in D-methionine transport as well as a number of ferredoxin-like proteins	NA|253aa|down_9|NZ_AP019739.1_687229_687988_+	PRK04334, PRK04334, hypothetical protein; Provisional
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	6	746050-746136	5	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	TGCTTGCAGGTTATGCCGAGCGA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|119aa|up_9|NZ_AP019739.1_729928_730285_+,NA|65aa|up_6|NZ_AP019739.1_734726_734921_-,NA	NA|119aa|up_9|NZ_AP019739.1_729928_730285_+	NA	NA|614aa|up_8|NZ_AP019739.1_730441_732283_+	pfam01642, MM_CoA_mutase, Methylmalonyl-CoA mutase	NA|711aa|up_7|NZ_AP019739.1_732295_734428_+	PRK09426, PRK09426, methylmalonyl-CoA mutase; Reviewed	NA|65aa|up_6|NZ_AP019739.1_734726_734921_-	NA	NA|615aa|up_5|NZ_AP019739.1_735173_737018_+	TIGR03701, mena_SCO4490, menaquinone biosynthesis decarboxylase, SCO4490 family	NA|351aa|up_4|NZ_AP019739.1_737017_738070_+	pfam12836, HHH_3, Helix-hairpin-helix motif	NA|64aa|up_3|NZ_AP019739.1_738158_738350_+	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed	NA|1265aa|up_2|NZ_AP019739.1_738712_742507_+	pfam16378, DUF4988, Domain of unknown function	NA|430aa|up_1|NZ_AP019739.1_742735_744025_-	pfam00328, His_Phos_2, Histidine phosphatase superfamily (branch 2)	NA|560aa|up_0|NZ_AP019739.1_744121_745801_-	cd11348, AmyAc_2, Alpha amylase catalytic domain found in an uncharacterized protein family	NA|294aa|down_0|NZ_AP019739.1_746202_747084_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|116aa|down_1|NZ_AP019739.1_747421_747769_-	pfam12675, DUF3795, Protein of unknown function (DUF3795)	NA|267aa|down_2|NZ_AP019739.1_748001_748802_-	TIGR01352, Protein_TonB, TonB family C-terminal domain	NA|464aa|down_3|NZ_AP019739.1_748885_750277_+	PRK13188, PRK13188, bifunctional UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase/(3R)-hydroxymyristoyl-[acyl-carrier-protein] dehydratase; Reviewed	NA|260aa|down_4|NZ_AP019739.1_750347_751127_+	PRK05289, PRK05289, acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase	NA|185aa|down_5|NZ_AP019739.1_751725_752280_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|327aa|down_6|NZ_AP019739.1_752418_753399_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|487aa|down_7|NZ_AP019739.1_757090_758551_+	cd08977, SusD, starch binding outer membrane protein SusD	NA|466aa|down_8|NZ_AP019739.1_758588_759986_+	cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins	NA|621aa|down_9|NZ_AP019739.1_760012_761875_+	smart00089, PKD, Repeats in polycystic kidney disease 1 (PKD1) and other proteins
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	7	1126528-1126627	6	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	CGCCGAAGATACTCCCGCTCGGCAA	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|59aa|up_8|NZ_AP019739.1_1117445_1117622_+,NA|196aa|up_6|NZ_AP019739.1_1119303_1119891_-,NA|371aa|up_0|NZ_AP019739.1_1125307_1126420_+,NA|633aa|down_1|NZ_AP019739.1_1129738_1131637_+,NA|340aa|down_3|NZ_AP019739.1_1135585_1136605_-	NA|293aa|up_9|NZ_AP019739.1_1115996_1116875_+	pfam13149, Mfa_like_1, Fimbrillin-like	NA|59aa|up_8|NZ_AP019739.1_1117445_1117622_+	NA	NA|148aa|up_7|NZ_AP019739.1_1117915_1118359_+	pfam11396, PepSY_like, Putative beta-lactamase-inhibitor-like, PepSY-like	NA|196aa|up_6|NZ_AP019739.1_1119303_1119891_-	NA	NA|481aa|up_5|NZ_AP019739.1_1120094_1121537_+	PRK11814, PRK11814, cysteine desulfurase activator complex subunit SufB; Provisional	NA|252aa|up_4|NZ_AP019739.1_1121560_1122316_+	TIGR01978, Probable_ATP-dependent_transporter_SufC, FeS assembly ATPase SufC	NA|273aa|up_3|NZ_AP019739.1_1122315_1123134_+	pfam01458, UPF0051, Uncharacterized protein family (UPF0051)	NA|406aa|up_2|NZ_AP019739.1_1123136_1124354_+	TIGR01979, Probable_cysteine_desulfurase, cysteine desulfurases, SufSfamily	NA|232aa|up_1|NZ_AP019739.1_1124619_1125315_+	PRK07933, PRK07933, dTMP kinase	NA|371aa|up_0|NZ_AP019739.1_1125307_1126420_+	NA	NA|990aa|down_0|NZ_AP019739.1_1126766_1129736_+	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein	NA|633aa|down_1|NZ_AP019739.1_1129738_1131637_+	NA	NA|1112aa|down_2|NZ_AP019739.1_1131871_1135207_-	cd13120, BF2867_like_N, N-terminal domain found in Bacteroides fragilis Nctc 9343 BF2867 and related proteins	NA|340aa|down_3|NZ_AP019739.1_1135585_1136605_-	NA	NA|927aa|down_4|NZ_AP019739.1_1136708_1139489_-	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain	NA|347aa|down_5|NZ_AP019739.1_1139500_1140541_-	cd10283, MnuA_DNase1-like, Mycoplasma pulmonis MnuA nuclease-like	NA|407aa|down_6|NZ_AP019739.1_1140632_1141853_-	pfam01223, Endonuclease_NS, DNA/RNA non-specific endonuclease	NA|1250aa|down_7|NZ_AP019739.1_1141912_1145662_-	cd14948, BACON, Bacteroidetes-Associated Carbohydrate-binding (putative) Often N-terminal (BACON) domain	NA|156aa|down_8|NZ_AP019739.1_1145912_1146380_-	pfam14126, DUF4293, Domain of unknown function (DUF4293)	NA|320aa|down_9|NZ_AP019739.1_1146390_1147350_-	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	8	1239643-1239752	7	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	TCCGCTTGGATAGGCTGCGCCTCGGCA	27	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA,NA|110aa|down_4|NZ_AP019739.1_1244625_1244955_-,NA|250aa|down_5|NZ_AP019739.1_1245009_1245759_-,NA|56aa|down_6|NZ_AP019739.1_1245762_1245930_-	NA|154aa|up_9|NZ_AP019739.1_1231559_1232021_-	PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated	NA|113aa|up_8|NZ_AP019739.1_1232032_1232371_-	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain	NA|521aa|up_7|NZ_AP019739.1_1232401_1233964_-	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit	NA|137aa|up_6|NZ_AP019739.1_1233982_1234393_-	TIGR03081, Methylmalonyl-CoA_epimerase_mitochondrial, methylmalonyl-CoA epimerase	NA|153aa|up_5|NZ_AP019739.1_1234683_1235142_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|373aa|up_4|NZ_AP019739.1_1235147_1236266_+	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|152aa|up_3|NZ_AP019739.1_1236583_1237039_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|129aa|up_2|NZ_AP019739.1_1237046_1237433_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|306aa|up_1|NZ_AP019739.1_1237606_1238524_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|277aa|up_0|NZ_AP019739.1_1238570_1239401_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|466aa|down_0|NZ_AP019739.1_1239855_1241253_+	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)	NA|138aa|down_1|NZ_AP019739.1_1241289_1241703_-	cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families	NA|293aa|down_2|NZ_AP019739.1_1241699_1242578_-	TIGR04352, hypothetical_protein_imdm_1353, HprK-related kinase A	NA|574aa|down_3|NZ_AP019739.1_1242580_1244302_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|110aa|down_4|NZ_AP019739.1_1244625_1244955_-	NA	NA|250aa|down_5|NZ_AP019739.1_1245009_1245759_-	NA	NA|56aa|down_6|NZ_AP019739.1_1245762_1245930_-	NA	NA|145aa|down_7|NZ_AP019739.1_1245934_1246369_-	PRK04841, PRK04841, HTH-type transcriptional regulator MalT	NA|29aa|down_8|NZ_AP019739.1_1246343_1246430_-	pfam12099, DUF3575, Protein of unknown function (DUF3575)	NA|338aa|down_9|NZ_AP019739.1_1246378_1247392_-	pfam12099, DUF3575, Protein of unknown function (DUF3575)
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	9	1244307-1244442	8	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	CGTGCAAGCCGAGCGCAGAACCAAATTTATTTGGGATTTGCCGAGGCGCCGC	52	1	4	1244359-1244390|1244359-1244390|1244359-1244390|1244359-1244390	NZ_AP019739.1_1713374-1713343|NZ_AP019739.1_1978901-1978870|NZ_AP019739.1_1504544-1504575|NZ_AP019739.1_1799550-1799519	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA,NA|110aa|down_0|NZ_AP019739.1_1244625_1244955_-,NA|250aa|down_1|NZ_AP019739.1_1245009_1245759_-,NA|56aa|down_2|NZ_AP019739.1_1245762_1245930_-,NA|220aa|down_6|NZ_AP019739.1_1247977_1248637_-,NA|183aa|down_8|NZ_AP019739.1_1250068_1250617_-,NA|116aa|down_9|NZ_AP019739.1_1250619_1250967_-	NA|153aa|up_9|NZ_AP019739.1_1234683_1235142_+	cd02966, TlpA_like_family, TlpA-like family; composed of  TlpA, ResA, DsbE and similar proteins	NA|373aa|up_8|NZ_AP019739.1_1235147_1236266_+	PRK09435, PRK09435, methylmalonyl Co-A mutase-associated GTPase MeaB	NA|152aa|up_7|NZ_AP019739.1_1236583_1237039_+	PRK09216, rplM, 50S ribosomal protein L13; Reviewed	NA|129aa|up_6|NZ_AP019739.1_1237046_1237433_+	PRK00132, rpsI, 30S ribosomal protein S9; Reviewed	NA|306aa|up_5|NZ_AP019739.1_1237606_1238524_+	PRK05299, rpsB, 30S ribosomal protein S2; Provisional	NA|277aa|up_4|NZ_AP019739.1_1238570_1239401_+	PRK09377, tsf, elongation factor Ts; Provisional	NA|466aa|up_3|NZ_AP019739.1_1239855_1241253_+	cd00585, Peptidase_C1B, Peptidase C1B subfamily (MEROPS database nomenclature); composed of eukaryotic bleomycin hydrolases (BH) and bacterial aminopeptidases C (pepC)	NA|138aa|up_2|NZ_AP019739.1_1241289_1241703_-	cd06462, Peptidase_S24_S26, The S24, S26 LexA/signal peptidase superfamily contains LexA-related and type I signal peptidase families	NA|293aa|up_1|NZ_AP019739.1_1241699_1242578_-	TIGR04352, hypothetical_protein_imdm_1353, HprK-related kinase A	NA|574aa|up_0|NZ_AP019739.1_1242580_1244302_-	COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]	NA|110aa|down_0|NZ_AP019739.1_1244625_1244955_-	NA	NA|250aa|down_1|NZ_AP019739.1_1245009_1245759_-	NA	NA|56aa|down_2|NZ_AP019739.1_1245762_1245930_-	NA	NA|145aa|down_3|NZ_AP019739.1_1245934_1246369_-	PRK04841, PRK04841, HTH-type transcriptional regulator MalT	NA|29aa|down_4|NZ_AP019739.1_1246343_1246430_-	pfam12099, DUF3575, Protein of unknown function (DUF3575)	NA|338aa|down_5|NZ_AP019739.1_1246378_1247392_-	pfam12099, DUF3575, Protein of unknown function (DUF3575)	NA|220aa|down_6|NZ_AP019739.1_1247977_1248637_-	NA	NA|375aa|down_7|NZ_AP019739.1_1248636_1249761_-	TIGR03696, tRNA_nuclease_WapA, RHS repeat-associated core domain	NA|183aa|down_8|NZ_AP019739.1_1250068_1250617_-	NA	NA|116aa|down_9|NZ_AP019739.1_1250619_1250967_-	NA
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	10	1504550-1504673	9	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	GAGCGGAGGCTCGTCCTCCGCAAAGTGTGCAAGCCGAGTG	40	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|176aa|up_4|NZ_AP019739.1_1499592_1500120_-,NA|449aa|down_0|NZ_AP019739.1_1504850_1506197_-	NA|247aa|up_9|NZ_AP019739.1_1494000_1494741_-	COG0169, AroE, Shikimate 5-dehydrogenase [Amino acid transport and metabolism]	NA|313aa|up_8|NZ_AP019739.1_1494737_1495676_-	pfam04018, DUF368, Domain of unknown function (DUF368)	NA|110aa|up_7|NZ_AP019739.1_1496100_1496430_-	pfam11680, DUF3276, Protein of unknown function (DUF3276)	NA|530aa|up_6|NZ_AP019739.1_1496573_1498163_-	COG0793, Prc, Periplasmic protease [Cell envelope biogenesis, outer membrane]	NA|447aa|up_5|NZ_AP019739.1_1498249_1499590_-	PRK00037, hisS, histidyl-tRNA synthetase; Reviewed	NA|176aa|up_4|NZ_AP019739.1_1499592_1500120_-	NA	NA|558aa|up_3|NZ_AP019739.1_1500172_1501846_-	PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed	NA|192aa|up_2|NZ_AP019739.1_1502428_1503004_+	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain	NA|339aa|up_1|NZ_AP019739.1_1503059_1504076_-	pfam09587, PGA_cap, Bacterial capsule synthesis protein PGA_cap	NA|106aa|up_0|NZ_AP019739.1_1504156_1504474_-	pfam14898, DUF4491, Domain of unknown function (DUF4491)	NA|449aa|down_0|NZ_AP019739.1_1504850_1506197_-	NA	NA|388aa|down_1|NZ_AP019739.1_1506377_1507541_+	cd07385, MPP_YkuE_C, Bacillus subtilis YkuE and related proteins, C-terminal metallophosphatase domain	NA|362aa|down_2|NZ_AP019739.1_1507537_1508623_+	COG1985, RibD, Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]	NA|481aa|down_3|NZ_AP019739.1_1508726_1510169_+	COG1538, TolC, Outer membrane protein [Cell envelope biogenesis, outer membrane / Intracellular trafficking and secretion]	NA|329aa|down_4|NZ_AP019739.1_1510185_1511172_+	PRK03598, PRK03598, putative efflux pump membrane fusion protein; Provisional	NA|393aa|down_5|NZ_AP019739.1_1511184_1512363_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|404aa|down_6|NZ_AP019739.1_1512365_1513577_+	pfam12698, ABC2_membrane_3, ABC-2 family transporter protein	NA|1007aa|down_7|NZ_AP019739.1_1513666_1516687_-	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family	NA|256aa|down_8|NZ_AP019739.1_1517340_1518108_-	COG3279, LytT, Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]	NA|459aa|down_9|NZ_AP019739.1_1518104_1519481_-	COG3275, LytS, Putative regulator of cell autolysis [Signal transduction mechanisms]
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	11	1610396-1610510	10	CRISPRCasFinder	no	WYL	cas3,RT,DEDDh,WYL,PD-DExK	Unclear	TCGTATCTTTGGCTGACACCTTAGATACTCCGCCTCGGCAA	41	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|224aa|up_9|NZ_AP019739.1_1600295_1600967_-,NA|198aa|up_6|NZ_AP019739.1_1602496_1603090_-,NA|129aa|up_4|NZ_AP019739.1_1606067_1606454_+,NA|509aa|up_3|NZ_AP019739.1_1606456_1607983_+,NA	NA|224aa|up_9|NZ_AP019739.1_1600295_1600967_-	NA	NA|296aa|up_8|NZ_AP019739.1_1600973_1601861_-	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms]	NA|190aa|up_7|NZ_AP019739.1_1601943_1602513_-	pfam16357, PepSY_TM_like_2, Putative PepSY_TM-like	NA|198aa|up_6|NZ_AP019739.1_1602496_1603090_-	NA	NA|923aa|up_5|NZ_AP019739.1_1603288_1606057_+	pfam07715, Plug, TonB-dependent Receptor Plug Domain	NA|129aa|up_4|NZ_AP019739.1_1606067_1606454_+	NA	NA|509aa|up_3|NZ_AP019739.1_1606456_1607983_+	NA	NA|406aa|up_2|NZ_AP019739.1_1608020_1609238_+	pfam16215, DUF4876, Protein of unknown function (DUF4876)	NA|62aa|up_1|NZ_AP019739.1_1609305_1609491_-	pfam03699, UPF0182, Uncharacterized protein family (UPF0182)	NA|261aa|up_0|NZ_AP019739.1_1609505_1610288_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|238aa|down_0|NZ_AP019739.1_1610573_1611287_+	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional	NA|454aa|down_1|NZ_AP019739.1_1611384_1612746_+	PRK10861, PRK10861, signal peptidase I	NA|203aa|down_2|NZ_AP019739.1_1612742_1613351_+	pfam01205, UPF0029, Uncharacterized protein family UPF0029	NA|930aa|down_3|NZ_AP019739.1_1613347_1616137_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|406aa|down_4|NZ_AP019739.1_1616142_1617360_+	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|216aa|down_5|NZ_AP019739.1_1617359_1618007_+	pfam01596, Methyltransf_3, O-methyltransferase	NA|652aa|down_6|NZ_AP019739.1_1618095_1620051_+	pfam12969, DUF3857, Domain of Unknown Function with PDB structure (DUF3857)	NA|632aa|down_7|NZ_AP019739.1_1620054_1621950_+	pfam12970, DUF3858, Domain of Unknown Function with PDB structure (DUF3858)	NA|107aa|down_8|NZ_AP019739.1_1622031_1622352_-	cd11531, NTP-PPase_BsYpjD, Nucleoside Triphosphate Pyrophosphohydrolase (EC 3	NA|581aa|down_9|NZ_AP019739.1_1622544_1624287_-	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1)
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	12	1674980-1675175	11	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	GCAGAAGCAAGCGTTAGCTTGATTATGCCGAGACGAAGTATCTAAGAC	48	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|82aa|up_5|NZ_AP019739.1_1669019_1669265_-,NA|104aa|down_2|NZ_AP019739.1_1676120_1676432_+,NA|106aa|down_8|NZ_AP019739.1_1682566_1682884_-	NA|812aa|up_9|NZ_AP019739.1_1662741_1665177_+	pfam14905, OMP_b-brl_3, Outer membrane protein beta-barrel family	NA|482aa|up_8|NZ_AP019739.1_1665292_1666738_-	cd03890, M20_pepD, M20 Peptidase D has specificity for beta-alanyl-L-histidine dipeptide	NA|303aa|up_7|NZ_AP019739.1_1666828_1667737_+	COG1715, Mrr, Restriction endonuclease [Defense mechanisms]	NA|160aa|up_6|NZ_AP019739.1_1667742_1668222_+	pfam02542, YgbB, YgbB family	NA|82aa|up_5|NZ_AP019739.1_1669019_1669265_-	NA	NA|67aa|up_4|NZ_AP019739.1_1669424_1669625_+	COG1278, CspC, Cold shock proteins [Transcription]	NA|411aa|up_3|NZ_AP019739.1_1669938_1671171_+	COG0205, PfkA, 6-phosphofructokinase [Carbohydrate transport and metabolism]	NA|268aa|up_2|NZ_AP019739.1_1671255_1672059_+	pfam13424, TPR_12, Tetratricopeptide repeat	NA|373aa|up_1|NZ_AP019739.1_1672134_1673253_-	COG0513, SrmB, Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]	NA|396aa|up_0|NZ_AP019739.1_1673598_1674786_-	pfam00999, Na_H_Exchanger, Sodium/hydrogen exchanger family	NA|163aa|down_0|NZ_AP019739.1_1675329_1675818_-	pfam06908, DUF1273, Protein of unknown function (DUF1273)	NA|65aa|down_1|NZ_AP019739.1_1675916_1676111_+	pfam12732, YtxH, YtxH-like protein	NA|104aa|down_2|NZ_AP019739.1_1676120_1676432_+	NA	NA|577aa|down_3|NZ_AP019739.1_1676507_1678238_-	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5	NA|340aa|down_4|NZ_AP019739.1_1678237_1679257_-	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|293aa|down_5|NZ_AP019739.1_1679277_1680156_-	cd01714, ETF_beta, The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases	NA|236aa|down_6|NZ_AP019739.1_1680230_1680938_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|422aa|down_7|NZ_AP019739.1_1680963_1682229_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|106aa|down_8|NZ_AP019739.1_1682566_1682884_-	NA	NA|689aa|down_9|NZ_AP019739.1_1683031_1685098_+	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	13	1799539-1799657	12	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	CCGCTTAGACAGGCGGCGCCTCGGCAAAATCGCAA	35	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|66aa|up_9|NZ_AP019739.1_1789690_1789888_-,NA|547aa|up_8|NZ_AP019739.1_1789941_1791582_-,NA|47aa|up_7|NZ_AP019739.1_1791632_1791773_-,NA|206aa|down_2|NZ_AP019739.1_1802823_1803441_+	NA|66aa|up_9|NZ_AP019739.1_1789690_1789888_-	NA	NA|547aa|up_8|NZ_AP019739.1_1789941_1791582_-	NA	NA|47aa|up_7|NZ_AP019739.1_1791632_1791773_-	NA	NA|424aa|up_6|NZ_AP019739.1_1792280_1793552_+	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|56aa|up_5|NZ_AP019739.1_1793595_1793763_+	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3	NA|187aa|up_4|NZ_AP019739.1_1793895_1794456_-	pfam14059, DUF4251, Domain of unknown function (DUF4251)	NA|968aa|up_3|NZ_AP019739.1_1794644_1797548_-	COG0612, PqqL, Predicted Zn-dependent peptidases [General function prediction only]	NA|171aa|up_2|NZ_AP019739.1_1797569_1798082_-	pfam04306, DUF456, Protein of unknown function (DUF456)	NA|118aa|up_1|NZ_AP019739.1_1798134_1798488_-	pfam02261, Asp_decarbox, Aspartate decarboxylase	NA|279aa|up_0|NZ_AP019739.1_1798501_1799338_-	pfam02569, Pantoate_ligase, Pantoate-beta-alanine ligase	NA|666aa|down_0|NZ_AP019739.1_1799745_1801743_+	pfam03571, Peptidase_M49, Peptidase family M49	NA|219aa|down_1|NZ_AP019739.1_1802139_1802796_+	pfam13590, DUF4136, Domain of unknown function (DUF4136)	NA|206aa|down_2|NZ_AP019739.1_1802823_1803441_+	NA	NA|347aa|down_3|NZ_AP019739.1_1803511_1804552_-	cd08566, GDPD_AtGDE_like, Glycerophosphodiester phosphodiesterase domain of Agrobacterium tumefaciens and similar proteins	NA|386aa|down_4|NZ_AP019739.1_1804567_1805725_-	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional	NA|283aa|down_5|NZ_AP019739.1_1805762_1806611_-	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|554aa|down_6|NZ_AP019739.1_1806654_1808316_-	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	NA|87aa|down_7|NZ_AP019739.1_1808349_1808610_-	COG1925, FruB, Phosphotransferase system, HPr-related proteins [Carbohydrate transport and metabolism]	NA|616aa|down_8|NZ_AP019739.1_1808613_1810461_-	PRK15083, PRK15083, PTS system mannitol-specific transporter subunit IICBA; Provisional	NA|388aa|down_9|NZ_AP019739.1_1810960_1812124_-	pfam09603, Fib_succ_major, Fibrobacter succinogenes major domain (Fib_succ_major)
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	14	1952034-1952131	13	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	CAAAGATACGAAAAGTCGAGTGCA	24	1	3	1952058-1952107|1952058-1952107|1952058-1952107	NZ_AP019739.1_1056319-1056270|NZ_AP019739.1_1295641-1295592|NZ_AP019739.1_1295715-1295666	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA,NA	NA|594aa|up_9|NZ_AP019739.1_1939731_1941513_-	cd14948, BACON, Bacteroidetes-Associated Carbohydrate-binding (putative) Often N-terminal (BACON) domain	NA|237aa|up_8|NZ_AP019739.1_1941995_1942706_-	COG2220, COG2220, Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]	NA|287aa|up_7|NZ_AP019739.1_1942940_1943801_-	TIGR02168, Chromosome_partition_protein_Smc, chromosome segregation protein SMC, common bacterial type	NA|640aa|up_6|NZ_AP019739.1_1944128_1946048_+	COG0514, RecQ, Superfamily II DNA helicase [DNA replication, recombination, and repair]	NA|201aa|up_5|NZ_AP019739.1_1946073_1946676_+	cd06141, WRN_exo, DEDDy 3'-5' exonuclease domain of WRN and similar proteins	NA|401aa|up_4|NZ_AP019739.1_1946672_1947875_+	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only]	NA|173aa|up_3|NZ_AP019739.1_1947864_1948383_+	cd04335, PrdX_deacylase, This CD includes bacterial (Agrobacterium tumefaciens and Caulobacter crescentus ProX, and Clostridium sticklandii PrdX) and eukaryotic (Plasmodium falciparum N-terminal ProRS editing domain) sequences	NA|392aa|up_2|NZ_AP019739.1_1948468_1949644_-	pfam07075, DUF1343, Protein of unknown function (DUF1343)	NA|397aa|up_1|NZ_AP019739.1_1949654_1950845_-	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion]	NA|371aa|up_0|NZ_AP019739.1_1950891_1952004_-	PRK00578, prfB, peptide chain release factor 2; Validated	NA|202aa|down_0|NZ_AP019739.1_1952414_1953020_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|322aa|down_1|NZ_AP019739.1_1953121_1954087_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|1060aa|down_2|NZ_AP019739.1_1954327_1957507_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|627aa|down_3|NZ_AP019739.1_1957523_1959404_+	pfam07980, SusD_RagB, SusD family	NA|439aa|down_4|NZ_AP019739.1_1959426_1960743_+	pfam08522, DUF1735, Domain of unknown function (DUF1735)	NA|448aa|down_5|NZ_AP019739.1_1960826_1962170_+	COG5492, COG5492, Bacterial surface proteins containing Ig-like domains [Cell motility and secretion]	NA|537aa|down_6|NZ_AP019739.1_1962368_1963979_+	cd14792, GH27, glycosyl hydrolase family 27 (GH27)	NA|649aa|down_7|NZ_AP019739.1_1964064_1966011_-	PRK01318, PRK01318, membrane protein insertase; Provisional	NA|540aa|down_8|NZ_AP019739.1_1966035_1967655_-	PRK05380, pyrG, CTP synthetase; Validated	NA|713aa|down_9|NZ_AP019739.1_1967757_1969896_-	pfam03993, DUF349, Domain of Unknown Function (DUF349)
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	15	2037924-2038017	14	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	ACTCGAATTGCCGAGGCGAGAAA	23	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|183aa|up_2|NZ_AP019739.1_2034445_2034994_-,NA|109aa|down_4|NZ_AP019739.1_2041756_2042083_-,NA|817aa|down_6|NZ_AP019739.1_2043686_2046137_+	NA|281aa|up_9|NZ_AP019739.1_2029113_2029956_-	PRK08507, PRK08507, prephenate dehydrogenase; Validated	NA|170aa|up_8|NZ_AP019739.1_2029959_2030469_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|234aa|up_7|NZ_AP019739.1_2030480_2031182_-	PRK05282, PRK05282, dipeptidase PepE	NA|79aa|up_6|NZ_AP019739.1_2031360_2031597_+	PRK00982, acpP, acyl carrier protein; Provisional	NA|416aa|up_5|NZ_AP019739.1_2031657_2032905_+	TIGR03150, fabF, beta-ketoacyl-acyl-carrier-protein synthase II	NA|239aa|up_4|NZ_AP019739.1_2032991_2033708_+	TIGR02191, Ribonuclease_3, ribonuclease III, bacterial	NA|218aa|up_3|NZ_AP019739.1_2033737_2034391_+	PRK00024, PRK00024, DNA repair protein RadC	NA|183aa|up_2|NZ_AP019739.1_2034445_2034994_-	NA	NA|515aa|up_1|NZ_AP019739.1_2035766_2037311_+	PRK04173, PRK04173, glycyl-tRNA synthetase; Provisional	NA|143aa|up_0|NZ_AP019739.1_2037419_2037848_+	cd16964, YqgF, putative pre-16S rRNA nuclease YqgF and RuvX family	NA|182aa|down_0|NZ_AP019739.1_2038045_2038591_+	PRK00150, def, peptide deformylase; Reviewed	NA|109aa|down_1|NZ_AP019739.1_2038960_2039287_+	COG2076, EmrE, Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]	NA|435aa|down_2|NZ_AP019739.1_2039329_2040634_-	COG3681, COG3681, L-cysteine desulfidase [Amino acid transport and metabolism]	NA|188aa|down_3|NZ_AP019739.1_2040963_2041527_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|109aa|down_4|NZ_AP019739.1_2041756_2042083_-	NA	NA|425aa|down_5|NZ_AP019739.1_2042059_2043334_+	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|817aa|down_6|NZ_AP019739.1_2043686_2046137_+	NA	NA|1078aa|down_7|NZ_AP019739.1_2046200_2049434_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|660aa|down_8|NZ_AP019739.1_2049459_2051439_+	pfam07980, SusD_RagB, SusD family	NA|533aa|down_9|NZ_AP019739.1_2051497_2053096_+	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	16	2536282-2536381	15	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	CCGTATCGAACCCGTCGCCGCCGTCGCC	28	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|323aa|up_8|NZ_AP019739.1_2524539_2525508_-,NA	NA|359aa|up_9|NZ_AP019739.1_2521714_2522791_+	pfam01636, APH, Phosphotransferase enzyme family	NA|323aa|up_8|NZ_AP019739.1_2524539_2525508_-	NA	NA|252aa|up_7|NZ_AP019739.1_2525682_2526438_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|183aa|up_6|NZ_AP019739.1_2526527_2527076_+	pfam13568, OMP_b-brl_2, Outer membrane protein beta-barrel domain	NA|883aa|up_5|NZ_AP019739.1_2527147_2529796_-	pfam13502, AsmA_2, AsmA-like C-terminal region	NA|303aa|up_4|NZ_AP019739.1_2529839_2530748_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|302aa|up_3|NZ_AP019739.1_2530759_2531665_-	cd01561, CBS_like, CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase	NA|459aa|up_2|NZ_AP019739.1_2532129_2533506_+	cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA	NA|214aa|up_1|NZ_AP019739.1_2533521_2534163_+	pfam13189, Cytidylate_kin2, Cytidylate kinase-like family	NA|643aa|up_0|NZ_AP019739.1_2534247_2536176_-	pfam13149, Mfa_like_1, Fimbrillin-like	NA|651aa|down_0|NZ_AP019739.1_2538652_2540605_-	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase	NA|209aa|down_1|NZ_AP019739.1_2540621_2541248_-	cd14948, BACON, Bacteroidetes-Associated Carbohydrate-binding (putative) Often N-terminal (BACON) domain	NA|504aa|down_2|NZ_AP019739.1_2541252_2542764_-	pfam12771, SusD-like_2, Starch-binding associating with outer membrane	NA|1100aa|down_3|NZ_AP019739.1_2542768_2546068_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|342aa|down_4|NZ_AP019739.1_2546178_2547204_-	cd02652, nuc_hydro_2, NH_2: A subgroup of nucleoside hydrolases	NA|454aa|down_5|NZ_AP019739.1_2547792_2549154_-	COG2271, UhpC, Sugar phosphate permease [Carbohydrate transport and metabolism]	NA|257aa|down_6|NZ_AP019739.1_2549528_2550299_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|752aa|down_7|NZ_AP019739.1_2550538_2552794_+	COG0475, KefB, Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]	NA|220aa|down_8|NZ_AP019739.1_2552812_2553472_-	cd04302, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to the Pseudomonas aeruginosa PA0065	NA|168aa|down_9|NZ_AP019739.1_2553748_2554252_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	17	2570587-2570696	16	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	CCGCAAACTCCGTTTGCTTTTGCCC	25	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|133aa|up_0|NZ_AP019739.1_2569654_2570053_-,NA	NA|1421aa|up_9|NZ_AP019739.1_2556449_2560712_-	PRK00566, PRK00566, DNA-directed RNA polymerase subunit beta'; Provisional	NA|1287aa|up_8|NZ_AP019739.1_2560747_2564608_-	PRK00405, rpoB, DNA-directed RNA polymerase subunit beta; Reviewed	NA|126aa|up_7|NZ_AP019739.1_2564852_2565230_-	PRK00157, rplL, 50S ribosomal protein L7/L12; Reviewed	NA|174aa|up_6|NZ_AP019739.1_2565268_2565790_-	PRK00099, rplJ, 50S ribosomal protein L10; Reviewed	NA|233aa|up_5|NZ_AP019739.1_2565808_2566507_-	PRK05424, rplA, 50S ribosomal protein L1; Validated	NA|147aa|up_4|NZ_AP019739.1_2566513_2566954_-	PRK00140, rplK, 50S ribosomal protein L11; Validated	NA|187aa|up_3|NZ_AP019739.1_2566970_2567531_-	PRK05609, nusG, transcription antitermination protein NusG; Validated	NA|66aa|up_2|NZ_AP019739.1_2567553_2567751_-	pfam00584, SecE, SecE/Sec61-gamma subunits of protein translocation complex	NA|396aa|up_1|NZ_AP019739.1_2567889_2569077_-	PRK12735, PRK12735, elongation factor Tu; Reviewed	NA|133aa|up_0|NZ_AP019739.1_2569654_2570053_-	NA	NA|184aa|down_0|NZ_AP019739.1_2570720_2571272_+	PRK10151, PRK10151, 50S ribosomal protein L7/L12-serine acetyltransferase	NA|173aa|down_1|NZ_AP019739.1_2571312_2571831_+	cd04693, Nudix_Hydrolase_34, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|628aa|down_2|NZ_AP019739.1_2571807_2573691_-	pfam13360, PQQ_2, PQQ-like domain	NA|266aa|down_3|NZ_AP019739.1_2573936_2574734_-	PRK03634, PRK03634, rhamnulose-1-phosphate aldolase; Provisional	NA|343aa|down_4|NZ_AP019739.1_2574742_2575771_-	PRK13499, PRK13499, L-rhamnose/proton symporter RhaT	NA|385aa|down_5|NZ_AP019739.1_2575772_2576927_-	PRK10624, PRK10624, L-1,2-propanediol oxidoreductase; Provisional	NA|418aa|down_6|NZ_AP019739.1_2576931_2578185_-	PRK01076, PRK01076, L-rhamnose isomerase; Provisional	NA|475aa|down_7|NZ_AP019739.1_2578211_2579636_-	cd07771, FGGY_RhuK, L-rhamnulose kinases; a subfamily of the FGGY family of carbohydrate kinases	NA|297aa|down_8|NZ_AP019739.1_2579746_2580637_+	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|403aa|down_9|NZ_AP019739.1_2581086_2582295_+	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	18	2602821-2602942	17	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	TGAACAAGTTCGGCTCTGCGCTCGGCTTAACGAAAACGTTGATTTT	46	1	3	2602867-2602896|2602867-2602896|2602867-2602896	NZ_AP019739.1_2449779-2449750|NZ_AP019739.1_1213771-1213742|NZ_AP019739.1_2604841-2604812	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA,NA|608aa|down_6|NZ_AP019739.1_2612707_2614531_-	NA|471aa|up_9|NZ_AP019739.1_2584553_2585966_-	pfam02368, Big_2, Bacterial Ig-like domain (group 2)	NA|443aa|up_8|NZ_AP019739.1_2586038_2587367_-	cd14948, BACON, Bacteroidetes-Associated Carbohydrate-binding (putative) Often N-terminal (BACON) domain	NA|598aa|up_7|NZ_AP019739.1_2587397_2589191_-	pfam07980, SusD_RagB, SusD family	NA|1172aa|up_6|NZ_AP019739.1_2589209_2592725_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|308aa|up_5|NZ_AP019739.1_2592817_2593741_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|161aa|up_4|NZ_AP019739.1_2594063_2594546_-	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|294aa|up_3|NZ_AP019739.1_2594915_2595797_-	cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|451aa|up_2|NZ_AP019739.1_2595862_2597215_-	cd14948, BACON, Bacteroidetes-Associated Carbohydrate-binding (putative) Often N-terminal (BACON) domain	NA|598aa|up_1|NZ_AP019739.1_2597240_2599034_-	pfam07980, SusD_RagB, SusD family	NA|1188aa|up_0|NZ_AP019739.1_2599052_2602616_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|312aa|down_0|NZ_AP019739.1_2602980_2603916_-	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|190aa|down_1|NZ_AP019739.1_2604006_2604576_-	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|390aa|down_2|NZ_AP019739.1_2604882_2606052_+	cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases	NA|512aa|down_3|NZ_AP019739.1_2606169_2607705_-	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase	NA|603aa|down_4|NZ_AP019739.1_2607794_2609603_-	pfam07980, SusD_RagB, SusD family	NA|999aa|down_5|NZ_AP019739.1_2609615_2612612_-	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|608aa|down_6|NZ_AP019739.1_2612707_2614531_-	NA	NA|556aa|down_7|NZ_AP019739.1_2614757_2616425_-	pfam16370, MetallophosC, C terminal of Calcineurin-like phosphoesterase	NA|444aa|down_8|NZ_AP019739.1_2616421_2617753_-	cd07061, HP_HAP_like, Histidine phosphatase domain found in histidine acid phosphatases and phytases; contains a His residue which is phosphorylated during the reaction	NA|298aa|down_9|NZ_AP019739.1_2617764_2618658_-	cd01167, bac_FRK, Fructokinases (FRKs) mainly from bacteria and plants are enzymes with high specificity for fructose, as are all FRKs, but they catalyzes the conversion of fructose to fructose-6-phosphate, which is an entry point into glycolysis via conversion into glucose-6-phosphate
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	19	2763225-2763379	18	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	TTTTCGGAGCGGAAAGTGGTGCAAAGGTAAAACCTTTTTTCGAATCCACCAAAT	54	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|252aa|up_4|NZ_AP019739.1_2751820_2752576_+,NA|169aa|up_1|NZ_AP019739.1_2755922_2756429_+,NA|462aa|down_2|NZ_AP019739.1_2766811_2768197_+	NA|249aa|up_9|NZ_AP019739.1_2744099_2744846_+	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA	NA|792aa|up_8|NZ_AP019739.1_2744852_2747228_+	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	NA|67aa|up_7|NZ_AP019739.1_2748137_2748338_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|686aa|up_6|NZ_AP019739.1_2748348_2750406_+	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N)	NA|462aa|up_5|NZ_AP019739.1_2750420_2751806_+	cd17524, RMtype1_S_EcoUTORF5051P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli UTI89 S subunit (S	NA|252aa|up_4|NZ_AP019739.1_2751820_2752576_+	NA	NA|374aa|up_3|NZ_AP019739.1_2752589_2753711_+	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning]	NA|378aa|up_2|NZ_AP019739.1_2754364_2755498_-	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain	NA|169aa|up_1|NZ_AP019739.1_2755922_2756429_+	NA	NA|407aa|up_0|NZ_AP019739.1_2756545_2757766_-	cd17337, MFS_CsbX, CsbX family of the Major Facilitator Superfamily of transporters	NA|679aa|down_0|NZ_AP019739.1_2763640_2765677_-	cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin	NA|202aa|down_1|NZ_AP019739.1_2766102_2766708_+	PRK14788, PRK14788, lipoprotein signal peptidase; Provisional	NA|462aa|down_2|NZ_AP019739.1_2766811_2768197_+	NA	NA|707aa|down_3|NZ_AP019739.1_2768262_2770383_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|293aa|down_4|NZ_AP019739.1_2770390_2771269_+	pfam14054, DUF4249, Domain of unknown function (DUF4249)	NA|200aa|down_5|NZ_AP019739.1_2771905_2772505_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|344aa|down_6|NZ_AP019739.1_2772574_2773606_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|1189aa|down_7|NZ_AP019739.1_2773726_2777293_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|339aa|down_8|NZ_AP019739.1_2777846_2778863_-	cd01182, INT_RitC_C_like, C-terminal catalytic domain of recombinase RitC, a component of the recombinase trio	NA|335aa|down_9|NZ_AP019739.1_2778868_2779873_-	cd00797, INT_RitB_C_like, C-terminal catalytic domain of recombinase RitB, a component of the recombinase trio
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	20	2765728-2765824	19	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	CAAATTTATTTGAACATTGCCGAG	24	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|252aa|up_5|NZ_AP019739.1_2751820_2752576_+,NA|169aa|up_2|NZ_AP019739.1_2755922_2756429_+,NA|462aa|down_1|NZ_AP019739.1_2766811_2768197_+	NA|792aa|up_9|NZ_AP019739.1_2744852_2747228_+	COG4775, COG4775, Outer membrane protein/protective antigen OMA87 [Cell envelope biogenesis, outer membrane]	NA|67aa|up_8|NZ_AP019739.1_2748137_2748338_+	smart00530, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|686aa|up_7|NZ_AP019739.1_2748348_2750406_+	pfam13588, HSDR_N_2, Type I restriction enzyme R protein N-terminus (HSDR_N)	NA|462aa|up_6|NZ_AP019739.1_2750420_2751806_+	cd17524, RMtype1_S_EcoUTORF5051P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit TRD-CR, similar to Escherichia coli UTI89 S subunit (S	NA|252aa|up_5|NZ_AP019739.1_2751820_2752576_+	NA	NA|374aa|up_4|NZ_AP019739.1_2752589_2753711_+	COG2184, Fic, Protein involved in cell division [Cell division and chromosome partitioning]	NA|378aa|up_3|NZ_AP019739.1_2754364_2755498_-	cd01185, INTN1_C_like, Integrase IntN1 of Bacteroides mobilizable transposon NBU1 and similar proteins, C-terminal catalytic domain	NA|169aa|up_2|NZ_AP019739.1_2755922_2756429_+	NA	NA|407aa|up_1|NZ_AP019739.1_2756545_2757766_-	cd17337, MFS_CsbX, CsbX family of the Major Facilitator Superfamily of transporters	NA|679aa|up_0|NZ_AP019739.1_2763640_2765677_-	cd07485, Peptidases_S8_Fervidolysin_like, Peptidase S8 family domain in Fervidolysin	NA|202aa|down_0|NZ_AP019739.1_2766102_2766708_+	PRK14788, PRK14788, lipoprotein signal peptidase; Provisional	NA|462aa|down_1|NZ_AP019739.1_2766811_2768197_+	NA	NA|707aa|down_2|NZ_AP019739.1_2768262_2770383_+	pfam00593, TonB_dep_Rec, TonB dependent receptor	NA|293aa|down_3|NZ_AP019739.1_2770390_2771269_+	pfam14054, DUF4249, Domain of unknown function (DUF4249)	NA|200aa|down_4|NZ_AP019739.1_2771905_2772505_+	TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor, Bacteroides expansion family 1	NA|344aa|down_5|NZ_AP019739.1_2772574_2773606_+	COG3712, FecR, periplasmic ferric-dicitrate binding protein FecR, regulates iron transport through sigma-19 [Inorganic ion transport and metabolism, Signal transduction mechanisms]	NA|1189aa|down_6|NZ_AP019739.1_2773726_2777293_+	TIGR04056, OMP_RagA_SusC, TonB-linked outer membrane protein, SusC/RagA family	NA|339aa|down_7|NZ_AP019739.1_2777846_2778863_-	cd01182, INT_RitC_C_like, C-terminal catalytic domain of recombinase RitC, a component of the recombinase trio	NA|335aa|down_8|NZ_AP019739.1_2778868_2779873_-	cd00797, INT_RitB_C_like, C-terminal catalytic domain of recombinase RitB, a component of the recombinase trio	NA|418aa|down_9|NZ_AP019739.1_2779814_2781068_-	cd01188, INT_RitA_C_like, C-terminal catalytic domain of recombinase RitA, a component of the recombinase trio
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	21	3069064-3069184	20	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	AACGTTTTCGTTAAGCCAAATGGGCAGAGCCGCGCTTACGCGA	43	1	1	3069107-3069141	NZ_AP019739.1_674257-674223	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA,NA|159aa|down_0|NZ_AP019739.1_3069210_3069687_+	NA|918aa|up_9|NZ_AP019739.1_3057307_3060061_+	PLN02563, PLN02563, aminoacyl-tRNA ligase	NA|296aa|up_8|NZ_AP019739.1_3060060_3060948_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|291aa|up_7|NZ_AP019739.1_3060950_3061823_+	COG0657, Aes, Esterase/lipase [Lipid metabolism]	NA|126aa|up_6|NZ_AP019739.1_3061896_3062274_-	pfam09633, DUF2023, Protein of unknown function (DUF2023)	NA|165aa|up_5|NZ_AP019739.1_3062287_3062782_-	PRK09267, PRK09267, flavodoxin FldA; Validated	NA|362aa|up_4|NZ_AP019739.1_3063014_3064100_+	PRK00591, prfA, peptide chain release factor 1; Validated	NA|609aa|up_3|NZ_AP019739.1_3064391_3066218_+	TIGR03904, putative_radical_SAM_protein_YgiQ, uncharacterized radical SAM protein YgiQ	NA|299aa|up_2|NZ_AP019739.1_3066363_3067260_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|276aa|up_1|NZ_AP019739.1_3067371_3068199_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|242aa|up_0|NZ_AP019739.1_3068301_3069027_+	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|159aa|down_0|NZ_AP019739.1_3069210_3069687_+	NA	NA|358aa|down_1|NZ_AP019739.1_3069822_3070896_+	pfam07396, Porin_O_P, Phosphate-selective porin O and P	NA|302aa|down_2|NZ_AP019739.1_3070964_3071870_-	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1	NA|457aa|down_3|NZ_AP019739.1_3071873_3073244_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|454aa|down_4|NZ_AP019739.1_3073370_3074732_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|433aa|down_5|NZ_AP019739.1_3074754_3076053_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|558aa|down_6|NZ_AP019739.1_3076068_3077742_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|297aa|down_7|NZ_AP019739.1_3078212_3079103_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|147aa|down_8|NZ_AP019739.1_3079261_3079702_-	pfam11396, PepSY_like, Putative beta-lactamase-inhibitor-like, PepSY-like	NA|424aa|down_9|NZ_AP019739.1_3079827_3081099_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	22	3078026-3078143	21	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	CTTTGGCTGGCGCCTTAGATACTCCCGTTCGGCAGAACCAAGC	43	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|159aa|up_6|NZ_AP019739.1_3069210_3069687_+,NA|140aa|down_9|NZ_AP019739.1_3087124_3087544_+	NA|299aa|up_9|NZ_AP019739.1_3066363_3067260_-	TIGR02225, Tyrosine_recombinase_XerD, tyrosine recombinase XerD	NA|276aa|up_8|NZ_AP019739.1_3067371_3068199_+	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase	NA|242aa|up_7|NZ_AP019739.1_3068301_3069027_+	PRK00085, recO, DNA repair protein RecO; Reviewed	NA|159aa|up_6|NZ_AP019739.1_3069210_3069687_+	NA	NA|358aa|up_5|NZ_AP019739.1_3069822_3070896_+	pfam07396, Porin_O_P, Phosphate-selective porin O and P	NA|302aa|up_4|NZ_AP019739.1_3070964_3071870_-	cd09083, EEP-1, Exonuclease-Endonuclease-Phosphatase domain; uncharacterized family 1	NA|457aa|up_3|NZ_AP019739.1_3071873_3073244_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|454aa|up_2|NZ_AP019739.1_3073370_3074732_-	pfam12831, FAD_oxidored, FAD dependent oxidoreductase	NA|433aa|up_1|NZ_AP019739.1_3074754_3076053_-	cd17319, MFS_ExuT_GudP_like, Hexuronate transporter, Glucarate transporter, and similar transporters of the Major Facilitator Superfamily	NA|558aa|up_0|NZ_AP019739.1_3076068_3077742_-	PRK04123, PRK04123, ribulokinase; Provisional	NA|297aa|down_0|NZ_AP019739.1_3078212_3079103_+	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter	NA|147aa|down_1|NZ_AP019739.1_3079261_3079702_-	pfam11396, PepSY_like, Putative beta-lactamase-inhibitor-like, PepSY-like	NA|424aa|down_2|NZ_AP019739.1_3079827_3081099_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|229aa|down_3|NZ_AP019739.1_3081147_3081834_-	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|366aa|down_4|NZ_AP019739.1_3082613_3083711_+	COG0758, Smf, Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake [DNA replication, recombination, and repair / Intracellular trafficking and secretion]	NA|279aa|down_5|NZ_AP019739.1_3083797_3084634_+	cd01310, TatD_DNAse, TatD like proteins;  E	NA|101aa|down_6|NZ_AP019739.1_3084630_3084933_+	TIGR04076, conserved_hypothetical_protein, TIGR04076 family protein	NA|347aa|down_7|NZ_AP019739.1_3084947_3085988_+	cd08963, L-asparaginase_I, Type I (cytosolic) bacterial L-asparaginase	NA|271aa|down_8|NZ_AP019739.1_3086282_3087095_+	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion]	NA|140aa|down_9|NZ_AP019739.1_3087124_3087544_+	NA
GCF_006542745.1_6CPBBH3	NZ_AP019739	Alistipes communis strain 6CPBBH3	23	3299370-3299468	22	CRISPRCasFinder	no		cas3,RT,DEDDh,WYL,PD-DExK	Orphan	ATTGCCGAGTCGGAGTATCTTCGGCG	26	0	0	NA	NA	NA	1	1	Orphan	cas3,RT,DEDDh,WYL,PD-DExK	NA|282aa|up_2|NZ_AP019739.1_3296299_3297145_+,NA	NA|452aa|up_9|NZ_AP019739.1_3289012_3290368_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|433aa|up_8|NZ_AP019739.1_3290364_3291663_+	COG5000, NtrY, Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]	NA|242aa|up_7|NZ_AP019739.1_3292107_3292833_+	pfam11738, DUF3298, Protein of unknown function (DUF3298)	NA|418aa|up_6|NZ_AP019739.1_3292836_3294090_+	TIGR00237, exodeoxyribonuclease_VII_large_subunit, exodeoxyribonuclease VII, large subunit	NA|64aa|up_5|NZ_AP019739.1_3294094_3294286_+	pfam02609, Exonuc_VII_S, Exonuclease VII small subunit	NA|255aa|up_4|NZ_AP019739.1_3294282_3295047_+	pfam08241, Methyltransf_11, Methyltransferase domain	NA|281aa|up_3|NZ_AP019739.1_3295440_3296283_+	PLN03210, PLN03210, Resistant to P	NA|282aa|up_2|NZ_AP019739.1_3296299_3297145_+	NA	NA|466aa|up_1|NZ_AP019739.1_3297160_3298558_+	NF033187, internalin_J, class 1 internalin InlJ	NA|199aa|up_0|NZ_AP019739.1_3298723_3299320_-	PRK09347, folE, GTP cyclohydrolase I; Provisional	NA|197aa|down_0|NZ_AP019739.1_3299940_3300531_-	pfam13023, HD_3, HD domain	NA|131aa|down_1|NZ_AP019739.1_3300534_3300927_-	COG1188, COG1188, Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA	NA|NA	NA
