The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	25294	162766	2766162	plate,integrase,terminase,protease,holin,portal,head,capsid,tail,tRNA,transposase	Streptococcus_phage(12.73%)	148	76088:76106	112055:112073
WP_002286621.1|25294_28093_+|tRNA	isoleucine--tRNA ligase	tRNA	A0A2H4UVG0	Bodo_saltans_virus	26.4	1.6e-74
WP_002286618.1|28141_29668_-	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	35.3	8.9e-75
WP_002286616.1|29682_30330_-	metal-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286678.1|30513_30843_-	DUF4828 domain-containing protein	NA	NA	NA	NA	NA
WP_002286614.1|31019_31748_+	DNA/RNA nuclease SfsA	NA	NA	NA	NA	NA
WP_002286612.1|31763_32777_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002286608.1|32776_34054_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	28.8	5.8e-35
WP_002286607.1|34116_36819_+	sigma-54-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_002286606.1|36970_37288_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002286604.1|37317_37638_+	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002286601.1|37745_39206_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002286598.1|39273_39495_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286596.1|39525_39708_+	DUF3188 domain-containing protein	NA	NA	NA	NA	NA
WP_002286592.1|39707_40121_+	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
WP_141600676.1|40243_41425_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002286587.1|41955_43095_-|integrase	site-specific integrase	integrase	Q9AZR0	Lactococcus_phage	47.1	2.6e-95
WP_002303012.1|43393_44029_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296616.1|44141_44777_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303013.1|44810_45272_-	DUF4429 domain-containing protein	NA	A0A0F6N4L7	Staphylococcus_phage	34.8	4.5e-06
WP_002297218.1|45441_46737_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002296613.1|46923_47355_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA	NA
WP_002296612.1|47372_47693_-	helix-turn-helix transcriptional regulator	NA	A0A1S5SDR1	Streptococcus_phage	40.2	2.0e-13
WP_002290310.1|47991_48768_+	phage antirepressor protein	NA	A0A1Q1PVU2	Staphylococcus_phage	53.8	1.1e-73
WP_002296611.1|48782_48986_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002286573.1|49001_49340_+	DUF771 domain-containing protein	NA	NA	NA	NA	NA
WP_002296610.1|49326_49506_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286568.1|49548_50019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286562.1|50105_50804_+	phage regulatory protein	NA	D2IYT0	Enterococcus_phage	34.6	1.7e-25
WP_002286559.1|50981_51323_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286557.1|51315_51987_+	DUF1071 domain-containing protein	NA	A0A1B1P7F0	Bacillus_phage	47.4	4.2e-29
WP_002286553.1|51992_52679_+	hypothetical protein	NA	C9E2N1	Enterococcus_phage	69.1	3.2e-88
WP_002286552.1|52681_53431_+	helix-turn-helix domain-containing protein	NA	A0A1L2BY83	Clostridium_phage	54.0	1.7e-31
WP_002304429.1|53442_53712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303016.1|53874_54174_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303017.1|54173_54476_+	hypothetical protein	NA	D2IZY1	Enterococcus_phage	70.7	2.8e-33
WP_002303018.1|54515_54881_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303020.1|55507_55696_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002347162.1|55703_55898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303022.1|55930_56143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303023.1|56267_56471_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303024.1|56467_56740_+	DUF3850 domain-containing protein	NA	C9E2N9	Enterococcus_phage	61.6	5.5e-20
WP_002303025.1|56740_56926_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123838300.1|56912_57260_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303026.1|57219_57696_+	DUF1492 domain-containing protein	NA	A0A2H4JFW6	uncultured_Caudovirales_phage	50.8	2.2e-27
WP_002304433.1|57687_57873_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002349221.1|57841_58570_-	DUF4145 domain-containing protein	NA	A0A1X9I5M7	Streptococcus_phage	52.4	1.2e-58
WP_002303029.1|58617_58896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303030.1|58897_59284_+	hypothetical protein	NA	A0A1B1P7N8	Bacillus_phage	36.7	1.9e-10
WP_002304435.1|59280_59661_+	HNH endonuclease	NA	A0A1B1P7N1	Bacillus_phage	64.0	4.7e-41
WP_002303032.1|59772_60225_+	hypothetical protein	NA	A0A2H4JFK0	uncultured_Caudovirales_phage	66.2	6.8e-47
WP_002303033.1|60221_61949_+|terminase	terminase large subunit	terminase	A0A2H4JDG5	uncultured_Caudovirales_phage	73.3	6.9e-265
WP_002303034.1|61970_63200_+|portal	phage portal protein	portal	A0A2H4J9C7	uncultured_Caudovirales_phage	65.0	1.7e-145
WP_002349220.1|63165_63741_+|head,protease	HK97 family phage prohead protease	head,protease	A0A1B2APW1	Phage_Wrath	71.7	3.6e-69
WP_002303037.1|63753_65118_+|capsid	phage major capsid protein	capsid	A0A1B2APY9	Phage_Wrath	69.1	2.2e-125
WP_002303039.1|65119_65401_+|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1C8E967	Bacillus_phage	62.7	4.7e-22
WP_002303041.1|65378_65705_+|head	phage head closure protein	head	A0A0N7IRA3	Lactobacillus_phage	53.4	2.9e-23
WP_002303043.1|65694_66033_+	hypothetical protein	NA	A0A1B1P7P2	Bacillus_phage	45.9	9.6e-22
WP_002303045.1|66022_66388_+	HK97 gp10 family phage protein	NA	NA	NA	NA	NA
WP_002303047.1|66394_67021_+|tail	tail protein	tail	A0A2H4JGN2	uncultured_Caudovirales_phage	34.5	5.7e-28
WP_002303049.1|67020_67485_+	hypothetical protein	NA	A0A2H4J956	uncultured_Caudovirales_phage	38.9	1.4e-15
WP_002303051.1|67679_69989_+|tail	phage tail tape measure protein	tail	Q8W5Z7	Listeria_phage	50.1	5.5e-84
WP_002349218.1|70000_70705_+|tail	phage tail protein	tail	NA	NA	NA	NA
WP_002347164.1|70701_73461_+	CHAP domain-containing protein	NA	D7RWE0	Brochothrix_phage	55.7	1.6e-50
WP_002332773.1|73473_74382_+|plate	phage baseplate upper protein	plate	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
WP_002303523.1|74381_74999_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002301867.1|75002_75452_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305897.1|75451_75946_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002347165.1|75959_76391_+	hypothetical protein	NA	NA	NA	NA	NA
76088:76106	attL	TTTTGATAAAAAACAGTGG	NA	NA	NA	NA
WP_002303475.1|76392_76530_+	XkdX family protein	NA	NA	NA	NA	NA
WP_002303476.1|76566_76860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002286683.1|76856_77081_+|holin	holin	holin	NA	NA	NA	NA
WP_002303477.1|77077_78097_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.4e-60
WP_002302747.1|78873_79173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302745.1|79178_79409_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002286470.1|79658_79859_-|integrase	tyrosine-type recombinase/integrase	integrase	Q9AZR0	Lactococcus_phage	75.7	4.6e-08
WP_002296840.1|80175_81363_+|transposase	IS256-like element IS16 family transposase	transposase	A0A0K2CZ57	Paenibacillus_phage	46.3	8.2e-92
WP_002286469.1|81637_82870_-	aminopeptidase	NA	NA	NA	NA	NA
WP_002286467.1|83124_83694_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002286465.1|83871_84312_-	flavodoxin	NA	NA	NA	NA	NA
WP_002294533.1|84469_85234_+	type I methionyl aminopeptidase	NA	NA	NA	NA	NA
WP_002286461.1|85265_86189_+	YihY/virulence factor BrkB family protein	NA	NA	NA	NA	NA
WP_002286457.1|86264_87404_+	undecaprenyl/decaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphate transferase	NA	NA	NA	NA	NA
WP_002286455.1|87396_88197_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002286453.1|88196_89024_+	glycosyltransferase	NA	NA	NA	NA	NA
WP_002321540.1|89001_89736_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002286449.1|89835_90702_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	I7I009	Enterobacteria_phage	62.5	3.7e-102
WP_002286442.1|90715_91288_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	A0A291LA62	Escherichia_phage	49.2	8.3e-42
WP_002294532.1|91309_92338_+	dTDP-glucose 4,6-dehydratase	NA	A0A1D7XFE8	Escherichia_phage	42.9	6.4e-69
WP_002286428.1|92435_93287_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.0	1.7e-38
WP_002302719.1|93320_95354_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289081.1|96886_97693_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_002289079.1|97704_98925_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.9	1.1e-11
WP_002289078.1|98914_100501_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_002289076.1|100539_102678_+	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_002289074.1|103045_104029_-	serine hydrolase	NA	NA	NA	NA	NA
WP_002302725.1|104406_105798_+	sugar transferase	NA	NA	NA	NA	NA
WP_002289071.1|105813_106854_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	35.3	2.4e-07
WP_002289069.1|106872_107958_+	glycosyltransferase family 1 protein	NA	NA	NA	NA	NA
WP_002289068.1|107990_108953_+	glycosyl transferase	NA	NA	NA	NA	NA
WP_002347167.1|108945_110379_+	O-antigen ligase family protein	NA	NA	NA	NA	NA
WP_002292875.1|111431_112853_+	oligosaccharide flippase family protein	NA	NA	NA	NA	NA
112055:112073	attR	TTTTGATAAAAAACAGTGG	NA	NA	NA	NA
WP_002289359.1|112865_113873_+	polysaccharide biosynthesis protein	NA	A0A1V0SAI8	Catovirus	35.9	1.2e-40
WP_002292874.1|113884_114889_+	N-acetylneuraminate synthase	NA	NA	NA	NA	NA
WP_002289362.1|114885_116034_+	UDP-N-acetylglucosamine 2-epimerase (hydrolyzing)	NA	NA	NA	NA	NA
WP_002289363.1|116006_116684_+	acetyltransferase	NA	NA	NA	NA	NA
WP_002326811.1|116673_117816_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	A0A2K9L0G1	Tupanvirus	27.9	2.4e-24
WP_002289366.1|117828_118806_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA	NA
WP_002289368.1|118805_119714_+	dehydrogenase	NA	NA	NA	NA	NA
WP_002289370.1|119714_120467_+	acylneuraminate cytidylyltransferase family protein	NA	NA	NA	NA	NA
WP_002289372.1|120471_121419_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SKV4	Klosneuvirus	37.7	2.8e-50
WP_002296623.1|121592_122888_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	37.5	3.9e-55
WP_002285758.1|123011_123206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287659.1|123195_123549_+	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_002299190.1|123650_125198_+|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_002286097.1|125729_126683_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_000997695.1|127755_128934_-|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_002303174.1|129175_130798_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289161.1|131064_132234_-	serine hydrolase	NA	A0A2R4AS58	Mycobacterium_phage	26.3	1.6e-10
WP_002289159.1|132437_133613_+	endolytic transglycosylase MltG	NA	NA	NA	NA	NA
WP_002289156.1|133748_134228_+	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_002292871.1|134396_135128_+	cell wall-active antibiotics response protein	NA	NA	NA	NA	NA
WP_002289154.1|135124_136192_+	sensor histidine kinase	NA	NA	NA	NA	NA
WP_002289151.1|136365_137031_+	TrkA family potassium uptake protein	NA	NA	NA	NA	NA
WP_002303172.1|137058_137352_+	iron-sulfur cluster biosynthesis protein	NA	NA	NA	NA	NA
WP_002302440.1|137535_138837_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
WP_002289148.1|138920_139868_-	2-hydroxyacid dehydrogenase	NA	NA	NA	NA	NA
WP_002289147.1|140045_140849_-	DUF1189 domain-containing protein	NA	NA	NA	NA	NA
WP_002317368.1|140994_141909_+	cation transporter	NA	A0A1V0SED0	Indivirus	31.5	2.1e-10
WP_002292862.1|141956_142427_+	GtrA family protein	NA	NA	NA	NA	NA
WP_002295401.1|142511_143120_+	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	60.1	7.7e-70
WP_002292860.1|143253_143454_+	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	67.7	7.6e-19
WP_002295400.1|144207_145434_+	LytR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296956.1|145541_146012_-	tryptophan-rich sensory protein	NA	NA	NA	NA	NA
WP_002292856.1|146333_146912_+	chitin-binding protein	NA	A0A0K1Y848	Apis_mellifera_filamentous_virus	34.4	9.7e-14
WP_002295399.1|147085_148468_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	37.4	3.5e-86
WP_002295398.1|148574_149372_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_002296955.1|149364_150543_+	A/G-specific adenine glycosylase	NA	NA	NA	NA	NA
WP_002290817.1|150636_151170_+	DUF402 domain-containing protein	NA	NA	NA	NA	NA
WP_002290819.1|151247_151682_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002290821.1|151823_152942_+	AI-2E family transporter	NA	NA	NA	NA	NA
WP_002295395.1|153069_154446_+	HlyC/CorC family transporter	NA	NA	NA	NA	NA
WP_141600677.1|154408_154588_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002398627.1|154594_155869_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.4	9.2e-57
WP_002295394.1|156355_157936_+	peptide chain release factor 3	NA	A0A1B0RXH7	Streptococcus_phage	28.4	5.1e-33
WP_002287661.1|158133_158358_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302440.1|158648_159950_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
WP_002290825.1|160063_160384_-	DUF1827 family protein	NA	NA	NA	NA	NA
WP_002287598.1|160531_162766_-|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A223W0B1	Agrobacterium_phage	39.1	5.1e-127
>prophage 2
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	408384	417445	2766162		Gordonia_phage(16.67%)	9	NA	NA
WP_002288023.1|408384_409680_+	adenylosuccinate lyase	NA	A0A1B3B081	Gordonia_phage	33.1	4.5e-19
WP_002297115.1|409859_410237_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002288021.1|410492_411221_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	41.4	4.6e-45
WP_002295474.1|411220_411475_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002288017.1|411476_412148_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002288015.1|412148_414371_+	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	41.3	1.9e-150
WP_002288013.1|414355_415795_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	33.1	5.3e-53
WP_002321731.1|415826_416870_+	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	43.7	2.7e-62
WP_002288010.1|416866_417445_+	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	37.4	1.3e-26
>prophage 3
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	480138	529058	2766162	tRNA,transposase	Lysinibacillus_phage(13.33%)	42	NA	NA
WP_002297218.1|480138_481434_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
WP_002296887.1|481704_485232_+	ATP-dependent helicase	NA	NA	NA	NA	NA
WP_002296885.1|485228_488951_+	helicase-exonuclease AddAB subunit AddA	NA	S5MMD7	Bacillus_phage	23.3	2.7e-24
WP_002303789.1|489019_489361_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002295783.1|489669_490713_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	33.6	1.9e-31
WP_002296881.1|490717_493138_+|tRNA	phenylalanine--tRNA ligase subunit beta	tRNA	NA	NA	NA	NA
WP_002288045.1|493307_494318_-|tRNA	tryptophan--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002296877.1|494571_495309_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.6	7.7e-32
WP_002288041.1|495322_496138_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_002288038.1|496150_496798_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002296876.1|496813_497470_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_002317207.1|497631_498453_+	glutamate racemase	NA	NA	NA	NA	NA
WP_002296875.1|498455_499811_+	ribonuclease PH	NA	A0A0P0A2M4	Ugandan_cassava_brown_streak_virus	30.8	9.2e-15
WP_002288030.1|499811_500330_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_002295789.1|500436_500937_+	CBS domain-containing protein	NA	NA	NA	NA	NA
WP_002295791.1|501216_502137_-	mechanosensitive ion channel family protein	NA	NA	NA	NA	NA
WP_002296282.1|502301_503315_+	branched-chain amino acid aminotransferase	NA	NA	NA	NA	NA
WP_002295795.1|503424_504180_-	enoyl-ACP reductase FabI	NA	NA	NA	NA	NA
WP_002295797.1|504398_504839_+	3-hydroxyacyl-ACP dehydratase FabZ	NA	NA	NA	NA	NA
WP_002296283.1|504953_505715_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	38.0	6.7e-23
WP_002295800.1|505903_506998_+	DUF871 domain-containing protein	NA	NA	NA	NA	NA
WP_002303791.1|507083_508043_-|transposase	IS30-like element IS6770 family transposase	transposase	NA	NA	NA	NA
WP_002289735.1|508228_509164_+	alpha/beta hydrolase	NA	W5S4D8	Pithovirus	25.4	2.0e-05
WP_002289734.1|509248_510259_-	type I glyceraldehyde-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_002296575.1|510546_511860_+	GTPase ObgE	NA	NA	NA	NA	NA
WP_002295807.1|512080_512668_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002295809.1|512844_513786_+	ribonuclease Z	NA	NA	NA	NA	NA
WP_002296573.1|513782_514571_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_002295811.1|514580_515015_+	DUF1049 domain-containing protein	NA	NA	NA	NA	NA
WP_002296571.1|515156_517454_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	33.9	1.3e-80
WP_002362582.1|517467_517980_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	43.6	1.8e-32
WP_002287522.1|518393_518798_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002287525.1|518814_519963_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	93.4	1.2e-204
WP_002297436.1|520159_520378_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322319.1|520557_521190_-	transcriptional repressor LexA	NA	A0A1B2APZ1	Phage_Wrath	59.4	2.3e-16
WP_002295816.1|521327_521579_+	DUF896 family protein	NA	NA	NA	NA	NA
WP_002295818.1|521680_523678_+	transketolase	NA	NA	NA	NA	NA
WP_002326066.1|523855_524809_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002295819.1|524990_525878_+	LysM peptidoglycan-binding domain-containing protein	NA	A0A0K2CP65	Brevibacillus_phage	43.2	4.5e-18
WP_002296093.1|526017_526944_+	cysteine synthase A	NA	A0A1X9I5K7	Streptococcus_phage	57.2	2.7e-98
WP_002289542.1|527179_527626_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_002297218.1|527762_529058_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A2D1GQC1	Lysinibacillus_phage	20.9	2.1e-08
>prophage 4
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	703885	752587	2766162	integrase,protease,transposase	Synechococcus_phage(23.08%)	59	731832:731847	759205:759220
WP_002347126.1|703885_705421_-|transposase	IS1182-like element ISEfa7 family transposase	transposase	A0A1X9I5T2	Streptococcus_phage	48.2	3.3e-125
WP_002295142.1|705644_706016_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002291278.1|706271_706514_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_002296679.1|706545_707448_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA	NA
WP_002291274.1|707460_707649_-	DUF2273 domain-containing protein	NA	NA	NA	NA	NA
WP_002296677.1|707662_708226_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA	NA
WP_002300977.1|708263_709157_-	SDR family oxidoreductase	NA	A0A2N9QUX2	Trichoplusia_ni_ascovirus	46.0	5.2e-59
WP_002296674.1|709234_710173_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_002296672.1|710206_710557_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_002296671.1|710589_711492_-	glycosyltransferase family 8 protein	NA	NA	NA	NA	NA
WP_002296670.1|711484_712342_-	glycosyltransferase family 8 protein	NA	A0ZYL4	Archaeal_BJ1_virus	27.1	1.3e-19
WP_002296669.1|712675_713485_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_002296667.1|713524_714022_+	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002321681.1|714666_714990_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296665.1|715153_715408_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296663.1|715477_715723_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002296662.1|715798_716164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303842.1|716224_716788_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002293303.1|717355_717556_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	77.3	3.9e-23
WP_002296656.1|718307_719021_-	HAD family phosphatase	NA	A0A1D8KPI1	Synechococcus_phage	23.0	5.4e-06
WP_002296654.1|719013_720099_-	mannonate dehydratase	NA	NA	NA	NA	NA
WP_002296653.1|720115_720559_-	PTS fructose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002321678.1|720592_720946_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296650.1|721057_721459_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296648.1|721495_722005_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002303107.1|722026_722884_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_002296646.1|722901_723735_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002303106.1|723748_724546_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_002321677.1|724578_724863_-	alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_002296641.1|724859_725861_-	2-hydroxyacid dehydrogenase	NA	M1H9J0	Paramecium_bursaria_Chlorella_virus	29.0	2.8e-24
WP_002303105.1|725862_726765_-	decarboxylating 6-phosphogluconate dehydrogenase	NA	A0A1D8KGX1	Synechococcus_phage	35.3	2.5e-53
WP_002296639.1|726928_727777_+	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002296638.1|728422_728629_+	DUF3955 domain-containing protein	NA	NA	NA	NA	NA
WP_002296637.1|728830_729832_-	alpha/beta hydrolase	NA	M1PGN2	Moumouvirus	31.8	2.5e-09
WP_002311095.1|729836_731750_-	prolyl oligopeptidase family serine peptidase	NA	NA	NA	NA	NA
731832:731847	attL	AGAACAGGATTATTTT	NA	NA	NA	NA
WP_002296634.1|731917_732424_-	cysteine hydrolase	NA	NA	NA	NA	NA
WP_002296633.1|732583_733024_+	Spx/MgsR family RNA polymerase-binding regulatory protein	NA	NA	NA	NA	NA
WP_002296632.1|733049_734207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296631.1|734209_734566_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296629.1|734863_735838_-	LPXTG-anchored fibrinogen/nidogen-binding adhesin SgrA	NA	NA	NA	NA	NA
WP_002296628.1|736033_736873_-|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_002296627.1|737057_737945_+	rotamase	NA	NA	NA	NA	NA
WP_002311093.1|738528_739224_-	fructose-6-phosphate aldolase	NA	E3SKN5	Synechococcus_phage	31.5	1.0e-22
WP_002296624.1|739207_739606_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_002287107.1|740014_741265_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002289425.1|741406_742402_-	PTS glucitol/sorbitol transporter subunit IIB	NA	NA	NA	NA	NA
WP_002289423.1|742419_742974_-	PTS sorbitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002289422.1|742961_743453_-	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289421.1|743445_745314_-	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_002289420.1|745332_746133_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	26.2	2.6e-09
WP_002289418.1|746356_746572_+	DUF378 domain-containing protein	NA	NA	NA	NA	NA
WP_002303864.1|746710_747196_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289415.1|747651_748065_+	Hsp20/alpha crystallin family protein	NA	A0A1B2LRT2	Wolbachia_phage	31.5	2.1e-07
WP_002322258.1|748201_748462_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303865.1|748389_748629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002321532.1|748579_748870_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000997695.1|749115_750294_+|transposase	IS256-like element ISEf1 family transposase	transposase	NA	NA	NA	NA
WP_000222572.1|750449_751403_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002288357.1|751459_752587_+|integrase	site-specific integrase	integrase	A0A2I7SCV1	Paenibacillus_phage	55.5	1.8e-109
759205:759220	attR	AGAACAGGATTATTTT	NA	NA	NA	NA
>prophage 5
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	954815	964631	2766162	tRNA	Streptococcus_phage(50.0%)	10	NA	NA
WP_002293934.1|954815_956069_+	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	55.3	4.5e-24
WP_002288577.1|956139_956625_-|tRNA	Cys-tRNA(Pro) deacylase	tRNA	NA	NA	NA	NA
WP_002293935.1|956647_957406_-	type I 3-dehydroquinate dehydratase	NA	W6LP76	Streptococcus_phage	36.9	8.5e-26
WP_002302597.1|957421_958600_-	class I SAM-dependent rRNA methyltransferase	NA	W6LLI2	Streptococcus_phage	49.5	1.0e-102
WP_002302596.1|958829_960950_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	58.4	5.7e-221
WP_100066493.1|960885_961161_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297641.1|961172_961898_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302595.1|961887_962397_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302594.1|962466_963915_-	HAMP domain-containing histidine kinase	NA	A0A1V0SGX0	Hokovirus	29.3	1.7e-19
WP_002293942.1|963914_964631_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	1.0e-33
>prophage 6
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	1018252	1044707	2766162	integrase,tRNA,protease,transposase	Lactobacillus_phage(33.33%)	29	1020721:1020736	1054273:1054288
WP_002334341.1|1018252_1019206_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002288972.1|1019788_1019902_+|protease	CAAX amino protease	protease	NA	NA	NA	NA
WP_002288970.1|1019989_1020283_-	DUF2087 domain-containing protein	NA	NA	NA	NA	NA
WP_002286913.1|1020541_1020889_-	50S ribosomal protein L19	NA	NA	NA	NA	NA
1020721:1020736	attL	CGCTGATTCCAGCACC	NA	NA	NA	NA
WP_002293717.1|1021024_1021786_-|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	tRNA	NA	NA	NA	NA
WP_002293716.1|1021775_1022297_-	ribosome maturation factor RimM	NA	NA	NA	NA	NA
WP_002347114.1|1022466_1023258_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002290277.1|1023382_1023634_-	KH domain-containing protein	NA	NA	NA	NA	NA
WP_002290274.1|1023645_1023921_-	30S ribosomal protein S16	NA	NA	NA	NA	NA
WP_002293714.1|1024173_1024728_+	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	29.3	2.3e-12
WP_002303398.1|1024806_1025328_-	dihydrofolate reductase	NA	NA	NA	NA	NA
WP_002293710.1|1025331_1025910_-	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA	NA
WP_002303400.1|1026021_1027440_-	signal recognition particle protein	NA	NA	NA	NA	NA
WP_002293708.1|1027460_1027799_-	putative DNA-binding protein	NA	NA	NA	NA	NA
WP_002297194.1|1027758_1028262_-	DUF523 domain-containing protein	NA	NA	NA	NA	NA
WP_002293705.1|1028392_1029097_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	1.4e-38
WP_002303401.1|1029093_1030830_+	two-component sensor histidine kinase	NA	W8CYF6	Bacillus_phage	34.1	9.3e-28
WP_002303402.1|1030932_1033404_-	cation-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	29.2	1.8e-45
WP_002302566.1|1033728_1034619_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_002302564.1|1034815_1035298_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303350.1|1035503_1036463_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002289810.1|1036571_1036937_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303099.1|1038243_1039218_-	choloylglycine hydrolase family protein	NA	M1HVK5	Paramecium_bursaria_Chlorella_virus	31.8	5.4e-25
WP_002297404.1|1039627_1040878_+|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002295273.1|1041163_1041421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033611548.1|1041652_1042066_-	DUF4231 domain-containing protein	NA	NA	NA	NA	NA
WP_086953915.1|1042342_1043682_-|transposase	IS3-like element ISEnfa3 family transposase	transposase	A0A1B1P773	Bacillus_phage	52.7	2.6e-78
WP_002294831.1|1043753_1044446_-	N-acetylmuramoyl-L-alanine amidase	NA	Q9MCC6	Lactobacillus_phage	43.4	2.3e-30
WP_002294833.1|1044440_1044707_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A0P0I3D2	Lactobacillus_phage	58.7	2.8e-08
1054273:1054288	attR	CGCTGATTCCAGCACC	NA	NA	NA	NA
>prophage 7
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	1258824	1317700	2766162	plate,holin,tail,tRNA,transposase	Enterococcus_phage(23.08%)	60	NA	NA
WP_002303350.1|1258824_1259784_-|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002295061.1|1260004_1261108_-	L-lactate oxidase	NA	NA	NA	NA	NA
WP_002295059.1|1261329_1261800_-	DUF4809 family protein	NA	NA	NA	NA	NA
WP_000202380.1|1262056_1263376_+|transposase	IS1380-like element IS1678 family transposase	transposase	A0A1X9I6F6	Streptococcus_phage	82.7	4.8e-210
WP_002302982.1|1263816_1265457_+	NAD-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002302984.1|1265610_1266933_+	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_002295053.1|1266994_1267426_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_002302985.1|1267489_1268326_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_002295049.1|1268515_1268818_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_002290886.1|1268843_1269275_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_002290885.1|1269271_1269538_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_002290883.1|1269791_1270517_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_002289867.1|1271069_1271822_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_002289868.1|1271837_1272317_+	threonine/serine exporter	NA	NA	NA	NA	NA
WP_002296509.1|1272567_1274148_-	ABC transporter	NA	NA	NA	NA	NA
WP_002287741.1|1274140_1274884_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.9	3.6e-29
WP_002287742.1|1275059_1275836_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_002287743.1|1276083_1276920_-	TIGR03943 family protein	NA	NA	NA	NA	NA
WP_002287744.1|1276930_1277860_-	permease	NA	NA	NA	NA	NA
WP_002287745.1|1278051_1278405_+	thioredoxin family protein	NA	NA	NA	NA	NA
WP_002287746.1|1278478_1279135_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_002302987.1|1279360_1281292_+	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	31.9	8.7e-59
WP_002321414.1|1281377_1282601_-	glucuronyl hydrolase	NA	NA	NA	NA	NA
WP_002321415.1|1282594_1284493_-	DUF2264 domain-containing protein	NA	NA	NA	NA	NA
WP_002287753.1|1284486_1285605_-	glycosyl hydrolase family 88	NA	NA	NA	NA	NA
WP_002302991.1|1285687_1286521_-	carbohydrate ABC transporter permease	NA	NA	NA	NA	NA
WP_002287755.1|1286513_1287431_-	sugar ABC transporter permease	NA	NA	NA	NA	NA
WP_002287756.1|1287453_1287633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002287757.1|1287657_1288782_-	extracellular solute-binding protein	NA	NA	NA	NA	NA
WP_002296511.1|1288964_1289873_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002287759.1|1290013_1291627_+	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_000222572.1|1292277_1293231_+|transposase	IS30 family transposase	transposase	NA	NA	NA	NA
WP_002289406.1|1293264_1294494_-	GTPase HflX	NA	NA	NA	NA	NA
WP_002289405.1|1294495_1295413_-|tRNA	tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA	tRNA	NA	NA	NA	NA
WP_002289404.1|1295416_1296154_-	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	40.0	2.3e-12
WP_002289403.1|1296244_1296772_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289402.1|1296956_1297550_+	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	55.6	8.9e-55
WP_002289401.1|1297653_1298139_-	gamma carbonic anhydrase family protein	NA	NA	NA	NA	NA
WP_002296291.1|1298291_1298489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002289400.1|1298583_1300344_-	multidrug efflux ABC transporter subunit EfrB	NA	W8CYL7	Bacillus_phage	28.6	2.5e-52
WP_002296290.1|1300340_1302071_-	multidrug efflux ABC transporter subunit EfrA	NA	W8CYL7	Bacillus_phage	27.6	2.1e-43
WP_002287947.1|1302463_1302676_+	DNA-dependent RNA polymerase auxiliary subunit epsilon family protein	NA	NA	NA	NA	NA
WP_002287948.1|1302677_1304357_+	ribonuclease J	NA	NA	NA	NA	NA
WP_073119932.1|1304367_1304652_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002294067.1|1304610_1304811_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	71.2	3.7e-21
WP_002347086.1|1305886_1306285_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305550.1|1306277_1306730_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347085.1|1306716_1307124_-	hypothetical protein	NA	NA	NA	NA	NA
WP_025477679.1|1307102_1307405_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302755.1|1308399_1309608_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002302753.1|1309722_1310733_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1G5SA77	Enterococcus_phage	66.1	2.8e-61
WP_002349260.1|1310729_1311119_-|holin	phage holin family protein	holin	F0PIJ6	Enterococcus_phage	69.7	9.0e-40
WP_002302750.1|1311218_1311359_-	XkdX family protein	NA	A0A2H4JD72	uncultured_Caudovirales_phage	54.8	1.1e-08
WP_002332774.1|1311351_1311699_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347083.1|1311712_1312207_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002319918.1|1312206_1312656_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303306.1|1312659_1313280_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347082.1|1313279_1314188_-|plate	phage baseplate upper protein	plate	A0A1P8BLW0	Lactococcus_phage	25.2	7.8e-10
WP_002347081.1|1314200_1316963_-	CHAP domain-containing protein	NA	Q9AZX5	Lactococcus_phage	39.1	6.0e-138
WP_002303299.1|1316959_1317700_-|tail	tail protein	tail	NA	NA	NA	NA
>prophage 8
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	1326343	1350471	2766162	portal,terminase,tRNA	Enterococcus_phage(40.0%)	31	NA	NA
WP_002303292.1|1326343_1327873_-|portal	phage portal protein	portal	A0A0S2MVB2	Bacillus_phage	25.0	1.3e-28
WP_002298064.1|1327884_1329300_-	hypothetical protein	NA	C9E2I7	Enterococcus_phage	79.7	1.0e-218
WP_002303291.1|1329292_1330126_-|terminase	small subunit of terminase	terminase	D2IYW0	Enterococcus_phage	68.8	1.5e-79
WP_002332757.1|1330284_1330515_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303289.1|1330730_1330991_-	hypothetical protein	NA	A0A0S2MYE7	Enterococcus_phage	51.1	7.9e-16
WP_002303288.1|1331940_1332327_-	hypothetical protein	NA	O34053	Streptococcus_phage	53.5	1.6e-28
WP_002303286.1|1332339_1332753_-	autolysin	NA	C9E2P5	Enterococcus_phage	81.0	5.6e-56
WP_002303285.1|1332829_1333126_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303283.1|1333122_1333326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303282.1|1333332_1333563_-	hypothetical protein	NA	A0A0S2MYD2	Enterococcus_phage	52.1	1.6e-12
WP_002303281.1|1333559_1333943_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303280.1|1333939_1334482_-	DUF1642 domain-containing protein	NA	Q8W5X2	Listeria_phage	40.7	3.9e-17
WP_002303279.1|1334478_1334949_-	hypothetical protein	NA	A0A0A7RWK2	Clostridium_phage	33.8	9.6e-12
WP_002305847.1|1334950_1335133_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002317474.1|1335125_1335443_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002299339.1|1335439_1336291_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	30.2	2.3e-27
WP_002303278.1|1336305_1337106_-	hypothetical protein	NA	B4XYS6	Lactobacillus_phage	54.5	8.9e-58
WP_002303277.1|1337148_1338039_-	hypothetical protein	NA	D2IYT9	Enterococcus_phage	84.5	6.2e-137
WP_002303275.1|1338040_1338982_-	endonuclease	NA	D2IZK1	Enterococcus_phage	78.9	2.7e-146
WP_002303273.1|1339214_1339550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304466.1|1339801_1340041_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	81.1	1.8e-27
WP_002304465.1|1340349_1340538_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002304464.1|1340576_1340807_+	DUF2188 domain-containing protein	NA	E8ZD70	Streptococcus_phage	49.3	4.4e-10
WP_002303266.1|1340974_1341241_-	helix-turn-helix transcriptional regulator	NA	A0A1W6JP54	Staphylococcus_phage	52.7	5.4e-12
WP_002303265.1|1341440_1342145_+	LexA family transcriptional regulator	NA	D7RWF2	Brochothrix_phage	42.4	6.2e-39
WP_002303264.1|1342231_1343521_+	DUF4041 domain-containing protein	NA	M1NRY5	Streptococcus_phage	74.0	5.6e-46
WP_002303263.1|1343586_1344939_+	recombinase family protein	NA	D2IZV7	Enterococcus_phage	55.3	1.7e-133
WP_002304462.1|1344833_1345505_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_002287951.1|1345559_1346213_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_002294071.1|1346202_1347516_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_002287953.1|1347825_1350471_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	42.9	4.0e-163
>prophage 9
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	1859104	1928297	2766162	integrase,tRNA,transposase	Streptococcus_phage(60.0%)	58	1873753:1873768	1925707:1925722
WP_002302711.1|1859104_1860088_-|tRNA	tRNA-dihydrouridine synthase	tRNA	NA	NA	NA	NA
WP_071974491.1|1860256_1860403_+	hydrolase	NA	NA	NA	NA	NA
WP_002287492.1|1860502_1861273_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_002303703.1|1861265_1862201_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	35.1	8.0e-26
WP_002303702.1|1862256_1862460_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303701.1|1862516_1864166_-	DNA mismatch repair protein MutS	NA	A0A0N9R0S5	Chrysochromulina_ericina_virus	28.1	2.4e-17
WP_002302520.1|1864282_1866886_-	glycosyl hydrolase family 38	NA	NA	NA	NA	NA
WP_002305530.1|1866897_1867947_-	PTS fructose transporter subunit IIC	NA	NA	NA	NA	NA
WP_002302516.1|1867972_1868287_-	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
WP_002302514.1|1868302_1868749_-	PTS transporter subunit EIIA	NA	NA	NA	NA	NA
WP_002305529.1|1868749_1870726_-	transcription antiterminator	NA	NA	NA	NA	NA
WP_002303699.1|1870883_1871780_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_002303698.1|1871772_1872453_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	30.8	1.4e-24
WP_002303697.1|1872453_1873236_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_002287502.1|1873228_1874146_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	43.8	4.6e-42
1873753:1873768	attL	TCTTTGCTTTCTTTTT	NA	NA	NA	NA
WP_002305527.1|1874309_1874633_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303695.1|1875420_1878648_+	fibrinogen-binding MSCRAMM adhesin Fss3	NA	NA	NA	NA	NA
WP_002303694.1|1878759_1879074_+	YdcP family protein	NA	A0A1S5SF38	Streptococcus_phage	51.5	1.9e-24
WP_002302502.1|1879086_1879461_+	YdcP family protein	NA	A0A1S5SF96	Streptococcus_phage	63.9	6.4e-35
WP_002305525.1|1879461_1879815_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002347186.1|1879883_1880900_+	DUF87 domain-containing protein	NA	A0A1S5SFB5	Streptococcus_phage	56.9	2.6e-102
WP_096929203.1|1883492_1883849_+	cell division protein FtsK	NA	A0A1S5SFB5	Streptococcus_phage	84.6	1.3e-45
WP_002302494.1|1883893_1885036_+	DNA (cytosine-5-)-methyltransferase	NA	A0A1S5SEK0	Streptococcus_phage	62.4	1.6e-129
WP_002303689.1|1885570_1886755_+	XRE family transcriptional regulator	NA	A0A1S5SEX3	Streptococcus_phage	63.2	6.3e-145
WP_002302478.1|1886751_1886865_+	DUF3789 domain-containing protein	NA	NA	NA	NA	NA
WP_002298822.1|1886893_1887115_+	hypothetical protein	NA	A0A1S5SEY0	Streptococcus_phage	87.7	4.5e-28
WP_002302474.1|1887127_1887631_+	antirestriction protein ArdA	NA	A0A1S5SF25	Streptococcus_phage	60.4	2.0e-52
WP_002302472.1|1887756_1888794_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303688.1|1888808_1890506_+	ThiF family protein	NA	NA	NA	NA	NA
WP_002302466.1|1890498_1890960_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302464.1|1890972_1891833_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302462.1|1891870_1892260_+	conjugal transfer protein	NA	A0A1S5SEX7	Streptococcus_phage	67.5	5.1e-43
WP_002362292.1|1894219_1895986_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	27.2	1.0e-34
WP_002362294.1|1896025_1896916_+	hypothetical protein	NA	A0A1S5SF64	Streptococcus_phage	80.3	3.7e-121
WP_002302440.1|1897031_1898333_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	33.6	1.6e-48
WP_002302459.1|1898811_1900920_+	FUSC family protein	NA	A0A1S5SF30	Streptococcus_phage	60.9	4.5e-178
WP_002303684.1|1900916_1901867_+	peptidase P60	NA	A0A1S5SEZ8	Streptococcus_phage	64.8	2.1e-106
WP_002347183.1|1902580_1904410_+	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	29.8	3.8e-40
WP_002303681.1|1904409_1904568_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302456.1|1904586_1905498_+	conjugal transfer protein	NA	A0A1S5SF22	Streptococcus_phage	41.1	3.0e-62
WP_002297343.1|1906159_1906375_-	hypothetical protein	NA	NA	NA	NA	NA
WP_094029191.1|1906633_1906801_-|transposase	transposase	transposase	A0A288TXV8	Enterococcus_phage	75.0	4.4e-12
WP_002303678.1|1909132_1909804_-	hypothetical protein	NA	A0A0C5K996	Enterococcus_phage	33.9	4.1e-08
WP_010727027.1|1910152_1911604_-	peptidoglycan DD-metalloendopeptidase family protein	NA	A0A075BS18	Microcystis_phage	46.1	1.9e-18
WP_002303673.1|1911715_1913059_-	FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_002303671.1|1913192_1918895_-	YSIRK-type signal peptide-containing protein	NA	NA	NA	NA	NA
WP_002303670.1|1919511_1919817_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303669.1|1919961_1921167_-	YSIRK-targeted surface antigen transcriptional regulator	NA	NA	NA	NA	NA
WP_002302419.1|1921860_1922247_+	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_002302418.1|1922344_1922536_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002305515.1|1923049_1923382_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_002303668.1|1923291_1923495_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_002348989.1|1923525_1923672_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002348988.1|1923678_1923834_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	NA	NA	NA	NA
WP_002303667.1|1924109_1925450_+|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.0	5.1e-66
WP_002349038.1|1925485_1925728_-	hypothetical protein	NA	NA	NA	NA	NA
1925707:1925722	attR	TCTTTGCTTTCTTTTT	NA	NA	NA	NA
WP_002330794.1|1927422_1927641_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_106914383.1|1927661_1928297_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.1	1.2e-17
>prophage 10
NZ_CP041257	Enterococcus faecium strain 515 chromosome, complete genome	2766162	2729974	2738446	2766162		Streptococcus_phage(66.67%)	9	NA	NA
WP_002294039.1|2729974_2730619_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	52.6	4.2e-58
WP_002292340.1|2730633_2730963_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002288071.1|2730976_2731915_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	34.4	3.3e-35
WP_002288073.1|2731950_2732775_+	stage 0 sporulation family protein	NA	NA	NA	NA	NA
WP_002288076.1|2732767_2733115_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	41.1	5.1e-18
WP_002288078.1|2733183_2734056_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	60.4	3.1e-88
WP_002294035.1|2734164_2735286_+	DNA polymerase IV	NA	NA	NA	NA	NA
WP_002288081.1|2735339_2735942_-	anaerobic ribonucleoside-triphosphate reductase activating protein	NA	A0A288TZV3	Enterococcus_phage	58.6	1.7e-53
WP_002288083.1|2736256_2738446_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	66.6	1.8e-286
>prophage 1
NZ_CP041254	Enterococcus faecium strain 515 plasmid p169, complete sequence	63472	2216	51084	63472	holin,transposase,protease	Streptococcus_phage(50.0%)	58	NA	NA
WP_002300034.1|2216_4274_-|protease	serine protease	protease	NA	NA	NA	NA
WP_002300033.1|4418_4610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300032.1|4797_5253_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305782.1|5249_5492_+	DUF5415 family protein	NA	NA	NA	NA	NA
WP_002302862.1|5509_5812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302860.1|5880_7935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302859.1|7934_10547_+	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_002302858.1|10543_12922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302857.1|12982_13525_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302856.1|13602_13935_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302855.1|13935_14529_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302854.1|14550_16575_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302853.1|16574_17774_+	peptidoglycan DD-metalloendopeptidase family protein	NA	Q6SEC2	Lactobacillus_prophage	38.1	2.5e-32
WP_002302852.1|17789_18434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302851.1|18444_19251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033582323.1|19661_20597_+	DUF4199 domain-containing protein	NA	NA	NA	NA	NA
WP_002305788.1|20640_20910_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302849.1|21185_21461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302844.1|21502_21925_+	hypothetical protein	NA	NA	NA	NA	NA
WP_033582318.1|21944_23537_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302842.1|23557_23893_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002302840.1|24038_24233_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002297404.1|24368_25619_-|transposase	IS110 family transposase	transposase	M1NSC9	Streptococcus_phage	63.3	4.0e-113
WP_002305801.1|26028_28401_+	hypothetical protein	NA	B5SP25	Lactococcus_phage	29.7	3.4e-12
WP_002347152.1|28461_29922_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305772.1|29932_32137_+	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	50.7	6.1e-117
WP_002303311.1|32377_32971_+	abortive infection protein	NA	NA	NA	NA	NA
WP_002303312.1|32983_33883_+	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_002303313.1|33885_34371_+	single-stranded DNA-binding protein	NA	W6LM61	Streptococcus_phage	59.3	5.8e-44
WP_002316074.1|34511_34715_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_002295623.1|34789_35050_+	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	1.2e-11
WP_002347218.1|35486_35693_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002296238.1|35692_35944_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002300851.1|35958_36396_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303117.1|36388_37096_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002347143.1|37260_37461_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001120991.1|37476_37656_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000388479.1|37786_38056_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_000588503.1|38048_38306_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_001809248.1|38943_39768_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001261742.1|39932_40547_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	30.9	3.8e-16
WP_002303116.1|40784_41207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299573.1|41216_41420_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002299575.1|41630_42215_+	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	5.9e-43
WP_002303115.1|42585_43911_+	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	43.4	7.7e-99
WP_002303114.1|43903_44254_+	hypothetical protein	NA	NA	NA	NA	NA
WP_127821124.1|44310_44997_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.0e-126
WP_002347151.1|45044_45263_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303415.1|45310_45583_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303414.1|45572_45782_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002349053.1|45912_46233_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303412.1|46495_46804_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347150.1|46977_47346_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002347149.1|47459_48275_-	replication initiation protein	NA	NA	NA	NA	NA
WP_127821124.1|48352_49039_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.1	5.0e-126
WP_001021554.1|49095_49275_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000026576.1|49410_49701_+	hypothetical protein	NA	NA	NA	NA	NA
WP_059355959.1|49905_51084_-|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
>prophage 1
NZ_CP041256	Enterococcus faecium strain 515 plasmid p26, complete sequence	150610	10979	59448	150610	integrase,transposase	Bacillus_phage(18.75%)	47	34934:34993	50916:52126
WP_102642289.1|10979_12142_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	50.9	1.5e-77
WP_002303153.1|12790_13207_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303154.1|13312_13576_+	type II toxin-antitoxin system Phd/YefM family antitoxin	NA	NA	NA	NA	NA
WP_002305108.1|13575_13848_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA	NA
WP_002292678.1|13924_14254_+	AbrB family transcriptional regulator	NA	NA	NA	NA	NA
WP_002300557.1|14243_14531_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_002292680.1|14816_15674_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	30.7	8.1e-33
WP_002292681.1|15674_16223_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303155.1|16519_17467_-	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_002303156.1|17654_18842_+	NADP-dependent malic enzyme	NA	NA	NA	NA	NA
WP_002303157.1|18822_20127_+	2-hydroxycarboxylate transporter family protein	NA	NA	NA	NA	NA
WP_002303158.1|20152_21166_+	[citrate (pro-3S)-lyase] ligase	NA	NA	NA	NA	NA
WP_002303159.1|21169_21463_+	citrate lyase acyl carrier protein	NA	NA	NA	NA	NA
WP_002303160.1|21467_22373_+	citrate (pro-3S)-lyase subunit beta	NA	NA	NA	NA	NA
WP_002303161.1|22365_23925_+	citrate lyase subunit alpha	NA	NA	NA	NA	NA
WP_002305953.1|23921_24479_+	citrate lyase holo-[acyl-carrier protein] synthase	NA	NA	NA	NA	NA
WP_002303163.1|24471_25335_+	triphosphoribosyl-dephospho-CoA synthase CitG	NA	NA	NA	NA	NA
WP_002307493.1|25337_25550_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002316137.1|26614_27787_-|transposase	IS256 family transposase	transposase	A0A0N9STL0	Staphylococcus_phage	98.4	1.1e-133
WP_002307496.1|28002_28188_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002307497.1|28460_29273_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002303574.1|30907_31462_+|integrase	tyrosine-type recombinase/integrase	integrase	W8CYP1	Bacillus_phage	46.7	6.6e-36
WP_002347208.1|31517_31712_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287522.1|31797_32202_+|transposase	IS200/IS605-like element ISEfa4 family transposase	transposase	A0A286QN76	Streptococcus_phage	73.8	1.3e-52
WP_002330559.1|32218_33367_+|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	A0A288TXV8	Enterococcus_phage	91.0	1.0e-200
34934:34993	attL	GTAAGCGCCCCATAGAACAGTACCTGTACGTCAAATAACCCGACCTATAGAATAGAATCG	NA	NA	NA	NA
WP_002303202.1|35009_36557_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	2.8e-44
WP_002287659.1|36658_37012_-	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
WP_002285758.1|37001_37196_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300843.1|37377_38898_-|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	31.6	1.1e-48
WP_002305884.1|39140_39326_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_002300846.1|39309_39492_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301839.1|40445_41045_+|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	36.1	1.3e-29
WP_002322465.1|41108_41708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305879.1|42723_43596_-	ROK family protein	NA	NA	NA	NA	NA
WP_002303302.1|43859_45806_-	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002302078.1|45990_47430_+	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.1	1.4e-16
WP_002302077.1|47431_48394_+	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
WP_002354485.1|49024_49711_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_002301718.1|51104_51560_+|transposase	IS200/IS605 family transposase	transposase	I4AZI8	Saccharomonospora_phage	31.6	1.3e-13
WP_002325009.1|51580_51814_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002289255.1|52145_52376_-	resolvase	NA	NA	NA	NA	NA
50916:52126	attR	CGATTCTATTCTATAGGTCGGGTTATTTGACGTACAGGTACTGTTCTATGGGGCGCTTACCGTAAAGCGTGCGAAACAAGAAAACCGCGCGTTTCTACGCGTGGAAGAAGTATCTTTAGCGATAAAAACTCCTTTCGATATACTAGTGAGTGGCTACCAACCGCTCATCAGATCGAAAGGAGTTTTTTCATGTCAAATGACGATAAAAGTTTAGCATATACTCGTTGGAATTGTAAGTATCATATTATTTTTACACCAAAATATCAACGAAAAGTAATCTATGGGCAATTACGAAAAGATCTTGGAAAAATACTTAGGAAGTTGTGCGAAATGAAAGATGTGGAAATCATAGAAGCACATGCAATGCTAGATCATATTCACATGCTTGTTCGAGTACCACCAAAAATATGTATATCCAGTTTTATGGGGTATCTGAAAGGTCGTAGTGCGGTACTAATCCACGAGCAGCACGCAAATCTCAAATATAAATACGGAAACAAATCCTTTTGGTCGAAGAGATACTATGTGAGTACAGTCGGATTGAATCAAAAGACAAATGAAAAATACATCCGTGAACAAGAAGCTGATGATCGCATTCGATATATTATAAGTAAAAGAGAGTACGTAGAACCATTTAAAAAATAAAGAGAAGTAAGTGAGTGAAGATGAGCAGTTGGCGGTCTTTTAAAAATCCCCTTTTAAGGGGCAGCGAGTGTCGACCCCTTCTAGGGGGATTAAAAATACACCCGTCCTCACGGGTGTATGGGTTACTGATAGACTTGATTTTAACTGGTGTCAGAAACTTATGTCCAGAAAGGGTGATGAAATTTTGGCAATTTACGGCTATTCAAGAATTAGCACAAGCAACCAAGATTACAAAACACAAATTCAAACATTAGAAAATGCTGGCGCAGAAATAATCTTCCTAGAAAATCACTGGATTATCGAACACCTTTGGAAGTATTTTTGAGTTACGTAAGTATTGATGATCTGTCTAACTTAATTTGACAATTAAGAGTATATTTACTTCAGATGGTAAGGCAACAAAATAAAATACAATAGGCAGATGAACTAATAAATAAAATCTGTATTAAATACAGATAAATTAATATAAAAATCAAAAGGATCATAAACTTTTAACAAGTGATGAAATGGGTGGAAATTGATTCTTATAGACAGTTTGTCTCATAACATTGAAGTATTTTGCAATT	NA	NA	NA	NA
WP_002289254.1|52605_53424_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002289253.1|53584_54274_+	N-acetylmannosamine-6-phosphate 2-epimerase	NA	NA	NA	NA	NA
WP_002289252.1|54287_55790_+	PTS transporter subunit EIIC	NA	NA	NA	NA	NA
WP_002300328.1|55802_56279_+	PTS glucose transporter subunit IIA	NA	NA	NA	NA	NA
WP_002398627.1|56733_58008_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.4	9.2e-57
WP_086956687.1|58285_59448_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
>prophage 2
NZ_CP041256	Enterococcus faecium strain 515 plasmid p26, complete sequence	150610	64352	115949	150610	holin,bacteriocin,integrase,transposase	Leptospira_phage(29.41%)	51	85754:85813	101736:102946
WP_000222572.1|64352_65306_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
WP_002301126.1|65436_66687_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_002298736.1|66705_67632_-	PEP phosphonomutase	NA	NA	NA	NA	NA
WP_002301128.1|67710_68706_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_002301130.1|68721_69891_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002301131.1|69906_70641_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002398627.1|70784_72059_-|transposase	ISL3 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	36.4	9.2e-57
WP_087043335.1|72920_74083_-|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.2e-79
WP_002301811.1|74651_75944_-|transposase	IS256 family transposase	transposase	A0A218MNI5	uncultured_virus	41.0	6.1e-32
WP_002313174.1|76217_76478_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002346943.1|76728_77907_+|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.3	4.0e-30
WP_077828678.1|78216_78555_+|integrase,transposase	DDE-type integrase/transposase/recombinase	integrase,transposase	A0A0C5AEB1	Paenibacillus_phage	57.1	6.6e-23
WP_002287876.1|79503_79899_-	aspartate 1-decarboxylase	NA	NA	NA	NA	NA
WP_002287875.1|79908_80757_-	pantoate--beta-alanine ligase	NA	NA	NA	NA	NA
WP_002287874.1|80771_81599_-	3-methyl-2-oxobutanoate hydroxymethyltransferase	NA	NA	NA	NA	NA
WP_002287872.1|81610_82456_-	Rossmann-like and DUF2520 domain-containing protein	NA	NA	NA	NA	NA
WP_002285758.1|82669_82864_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287659.1|82853_83207_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
WP_002299190.1|83308_84856_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	2.8e-44
85754:85813	attL	GTAAGCGCCCCATAGAACAGTACCTGTACGTCAAATAACCCGACCTATAGAATAGAATCG	NA	NA	NA	NA
WP_002354485.1|87017_87704_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_002302077.1|88334_89297_-	LacI family transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	25.8	2.3e-20
WP_002302078.1|89298_90738_-	sucrose-6-phosphate hydrolase	NA	S6ATV4	Bacillus_phage	25.1	1.4e-16
WP_002303302.1|90922_92869_+	PTS beta-glucoside transporter subunit IIBCA	NA	NA	NA	NA	NA
WP_002305879.1|93132_94005_+	ROK family protein	NA	NA	NA	NA	NA
WP_002322465.1|95020_95620_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002301839.1|95683_96283_-|integrase	tyrosine-type recombinase/integrase	integrase	D2XR58	Bacillus_phage	36.1	1.3e-29
WP_002300846.1|97236_97419_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002305884.1|97402_97588_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA	NA
WP_002300843.1|97830_99351_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	31.6	1.1e-48
WP_002285758.1|99532_99727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002287659.1|99716_100070_+	IS66 family insertion sequence element accessory protein TnpB	NA	S5VXZ8	Leptospira_phage	38.7	5.7e-17
WP_002303202.1|100171_101719_+|transposase	IS66 family transposase	transposase	S5VTD3	Leptospira_phage	28.9	2.8e-44
WP_002300842.1|101890_102463_-	SIS domain-containing protein	NA	NA	NA	NA	NA
WP_002300841.1|102469_103132_-	ribulose-phosphate 3-epimerase	NA	NA	NA	NA	NA
101736:102946	attR	CGATTCTATTCTATAGGTCGGGTTATTTGACGTACAGGTACTGTTCTATGGGGCGCTTACGAATTATTAAGTTATGTCTAATCAAATAAAAAAACCATTCTCATATTTGCTGAATAATTAGCATTTAGAGAATGGTTTTTTATCTTTAAAATCTACTACTCAAAATCTGCATGTCGAGCAAACATCGTTTCTGAGCTTTCACCTGTTTTATCCATTAAAGATAACACTAAACTATCAAAGGTGAGAAATGCTAATTGTTCAAAACTTGAACCCATAGGTTGTGAAAAAGTATCTTCTTCTCGTTGATTTTCATCTTTGGTAATACCTGGTAATACAAGAACAGAATCTGCTAATTGACCAATCGACGAGTCTTTTTTCATGGTAACTAAAGCAATGCTTACACCACTTTGATTTGCTTTGGCCGCTAAATTTTTTAAACTACCTGTTTCACCTGAGCCAGAACAGATAATTAATAAATCTCCAGGTTGCGAATGTGGTGAACTAATTTCACCGACAAGGCTGACTGAAAAACCTAAATGCATTAAGCGATTCGTAAATGCTTGCATGGCAATTCCAGAGCGTCCTGCACCAGCTAGAAAGATGTGTTTAGCTTGAACAATTTTCTCACTAAATTGTTCTAACTCTACAGAATTAATACGTTTTGAGTTATTTTGTAATTCTAAGATAATCGCTTCTAAATAGTTTTTATTTTGGTCTTTATTGGTCATGATCTTTTACTTCACTTCCTCTAATGATTGATTTAGTTTATCAATTTGTTCTTGCGGGGTATTTTTCCCATTGAAGATGAAACCGCCTGATACAAAAATATCCGCCCCTGCTTTAGAACAAACTTTAATCGTTTGATTATCAATCTTGCCATCTACTTCAATATCATACGTATAATCATTTTGTTTGCGTATTACATCTAACTGTTCGATTTTAACTACTGTCTCTTGAATAAAATGCTTATTCTCTGTTCCTGGATTGATTGTCATTACTAATACTTGATCGACTAAAGATAATACTGGTTCAATAAAACTGACTGGTGTTGCAGGATTAAAAGTAATCCCTACTTTTGCTCCTGCTTCCTTGACTAACTGAATGACCTTCATTGCGTGTTTGGTAGCTTCAATGTGGAAGGTAACAATATCTGCTCCTGCTTCTACAAATCTTGTGACAATTTTTTCTGGTGTATCAATCATCAAATGAAC	NA	NA	NA	NA
WP_002300840.1|103147_103663_-	YjbQ family protein	NA	NA	NA	NA	NA
WP_002300838.1|103664_103949_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_002300836.1|103982_105311_-	PTS galactitol transporter subunit IIC	NA	NA	NA	NA	NA
WP_002300835.1|105324_105780_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_002332708.1|107724_108633_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_000997695.1|109164_110343_-|transposase	IS256-like element ISEf1 family transposase	transposase	A0A220NQR7	Corynebacterium_phage	25.6	3.0e-30
WP_002300807.1|110714_110978_-|bacteriocin	circular bacteriocin, circularin A/uberolysin family	bacteriocin	NA	NA	NA	NA
WP_000222572.1|111098_112052_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	35.8	3.7e-34
WP_125276106.1|112697_112976_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002311569.1|113020_113377_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300804.1|113435_113615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010729363.1|113630_113831_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300801.1|114059_114332_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002300797.1|114512_114764_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305810.1|114763_114970_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305809.1|115412_115637_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002295624.1|115826_115949_+|holin	putative holin-like toxin	holin	NA	NA	NA	NA
>prophage 1
NZ_CP041258	Enterococcus faecium strain 515 plasmid p27, complete sequence	81972	0	45260	81972	transposase	Streptococcus_phage(53.57%)	57	NA	NA
WP_002305774.1|429_837_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002305212.1|855_1674_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	34.6	6.5e-32
WP_002322251.1|1899_2193_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002322386.1|2204_2384_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303114.1|2380_2731_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303115.1|2723_4049_-	Y-family DNA polymerase	NA	M1Q231	Streptococcus_phage	43.4	7.7e-99
WP_002299575.1|4419_5004_-	recombinase family protein	NA	A0A0A7NPV4	Enterobacteria_phage	51.7	5.9e-43
WP_002299573.1|5214_5418_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303116.1|5427_5850_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002354485.1|6309_6996_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_002347145.1|7027_7342_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000947691.1|7476_8970_-	replication protein RepR	NA	NA	NA	NA	NA
WP_000429439.1|9581_10535_+	ParA family protein	NA	F0PIG8	Enterococcus_phage	26.1	7.7e-16
WP_001196543.1|10506_10782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000199136.1|10974_11229_+|transposase	transposase	transposase	A0A1P8CWP5	Bacillus_phage	47.6	2.1e-13
WP_077828739.1|11210_11594_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	45.5	1.6e-12
WP_086953888.1|11634_12796_+|transposase	IS3 family transposase	transposase	A0A2I7SC85	Paenibacillus_phage	51.3	1.6e-79
WP_073120187.1|12897_13470_+|transposase	IS3 family transposase	transposase	A0A1P8CWQ3	Bacillus_phage	57.1	5.0e-55
WP_002360715.1|13366_13606_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002303206.1|13942_14515_-	recombinase family protein	NA	A0A1J1J8Z4	Escherichia_phage	46.0	6.8e-36
WP_002362262.1|14530_15136_-	cell division protein Fic	NA	NA	NA	NA	NA
WP_002354485.1|15333_16020_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_002288897.1|16109_16733_-	recombinase family protein	NA	M9Q1K0	Clostridium_phage	30.1	1.8e-13
WP_000774078.1|17003_17516_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000357244.1|17522_18041_-	YfbU family protein	NA	NA	NA	NA	NA
WP_002349227.1|18202_18415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002354485.1|18617_19304_+|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_002294514.1|19440_20244_+	lincosamide nucleotidyltransferase Lnu(B)	NA	NA	NA	NA	NA
WP_002303393.1|21895_22120_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_002303392.1|22134_23004_+	hypothetical protein	NA	A0A1X9I6C9	Streptococcus_phage	90.3	5.7e-151
WP_000662263.1|22984_23719_+	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	100.0	1.5e-141
WP_001255866.1|23751_24660_+	aminoglycoside nucleotidyltransferase ANT(6)-Ia	NA	E4ZFP8	Streptococcus_phage	100.0	2.8e-177
WP_002347175.1|24656_24905_+	hypothetical protein	NA	A0A1B0RXL7	Streptococcus_phage	96.1	9.5e-27
WP_002324522.1|24907_25816_-|transposase	IS982-like element ISEfm1 family transposase	transposase	NA	NA	NA	NA
WP_002297218.1|25916_27212_-|transposase	ISL3-like element ISEfa11 family transposase	transposase	A0A1S5SBP9	Streptococcus_phage	29.1	1.0e-42
WP_001096887.1|27800_28595_+	aminoglycoside O-phosphotransferase APH(3')-IIIa	NA	E4ZFP6	Streptococcus_phage	100.0	2.3e-154
WP_031929417.1|29136_29220_+	23S rRNA methyltransferase attenuator leader peptide ErmL	NA	NA	NA	NA	NA
WP_001038796.1|29344_30082_+	23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(B)	NA	E4ZFQ0	Streptococcus_phage	99.6	2.4e-134
WP_001284311.1|30344_31208_-	toxin zeta	NA	NA	NA	NA	NA
WP_000301765.1|31209_31482_-	antitoxin	NA	A0A1X9I6E5	Streptococcus_phage	100.0	5.0e-05
WP_001835296.1|31498_31714_-	peptide-binding protein	NA	A0A1X9I6D5	Streptococcus_phage	97.1	4.2e-31
WP_002354485.1|32054_32741_-|transposase	IS6-like element IS1216 family transposase	transposase	A0A1X9I6C6	Streptococcus_phage	99.6	2.0e-127
WP_080386592.1|32779_33340_+	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	32.0	2.4e-09
WP_002321032.1|33363_33714_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	NA	NA	NA	NA
WP_002287514.1|33707_33971_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002298867.1|34283_34463_-	hypothetical protein	NA	NA	NA	NA	NA
WP_077495169.1|34478_34679_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326886.1|34907_35345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002299286.1|35360_35612_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296239.1|35611_35818_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002296240.1|36264_36525_-	hypothetical protein	NA	A0A0S2MYI8	Enterococcus_phage	51.4	3.4e-11
WP_002326885.1|36890_37388_-	single-stranded DNA-binding protein	NA	Q938M7	Temperate_phage	60.0	7.7e-44
WP_002326884.1|37390_38290_-	nucleotidyl transferase AbiEii/AbiGii toxin family protein	NA	NA	NA	NA	NA
WP_002326883.1|38302_38896_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002326882.1|39136_41341_-	type IA DNA topoisomerase	NA	A0A1X9I6W8	Streptococcus_phage	50.9	3.6e-117
WP_002300019.1|41351_42812_-	hypothetical protein	NA	NA	NA	NA	NA
WP_050558448.1|42872_45260_-	hypothetical protein	NA	B5SP25	Lactococcus_phage	32.1	2.1e-17
>prophage 2
NZ_CP041258	Enterococcus faecium strain 515 plasmid p27, complete sequence	81972	50895	52507	81972		Lactobacillus_prophage(100.0%)	2	NA	NA
WP_002305180.1|50895_52098_-	peptidoglycan DD-metalloendopeptidase family protein	NA	Q6SEC2	Lactobacillus_prophage	42.4	2.5e-32
WP_002297498.1|52171_52507_-	type II toxin-antitoxin system PemK/MazF family toxin	NA	A9D9Y1	Lactobacillus_prophage	27.1	2.4e-09
>prophage 3
NZ_CP041258	Enterococcus faecium strain 515 plasmid p27, complete sequence	81972	59439	61356	81972		Pseudomonas_phage(100.0%)	1	NA	NA
WP_002362048.1|59439_61356_-	group II intron reverse transcriptase/maturase	NA	A0A0U4J920	Pseudomonas_phage	27.4	9.3e-29
>prophage 4
NZ_CP041258	Enterococcus faecium strain 515 plasmid p27, complete sequence	81972	77106	77448	81972		Enterococcus_phage(100.0%)	1	NA	NA
WP_060812635.1|77106_77448_-	DUF5406 domain-containing protein	NA	F0PIH7	Enterococcus_phage	63.4	1.1e-36
