The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	0	11458	4651105		Escherichia_phage(25.0%)	11	NA	NA
WP_000860681.1|1635_2079_+	transcriptional regulator	NA	NA	NA	NA	NA
WP_001527317.1|2095_2629_+	glycoside hydrolase family 108 protein	NA	A0A0U2I1S0	Escherichia_phage	56.6	4.0e-54
WP_000026889.1|2689_3034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001527493.1|3160_4108_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001119009.1|4388_5528_-	molecular chaperone DnaJ	NA	E3T4P7	Cafeteria_roenbergensis_virus	36.0	4.2e-29
WP_000516126.1|5613_7530_-	molecular chaperone DnaK	NA	G8DDB7	Micromonas_pusilla_virus	48.9	5.8e-148
WP_015406145.1|7878_8283_+	DUF2541 family protein	NA	NA	NA	NA	NA
WP_058673726.1|8318_9032_+	acidic protein MsyB	NA	NA	NA	NA	NA
WP_000528525.1|9180_9747_+	acetate uptake transporter	NA	NA	NA	NA	NA
WP_000380373.1|9803_10394_-	molybdopterin adenylyltransferase	NA	NA	NA	NA	NA
WP_000130175.1|10504_11458_-	transaldolase	NA	A0A127KNC6	Cyanophage	31.0	9.7e-11
>prophage 2
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	30206	31631	4651105		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
WP_001527372.1|30206_31631_-	two-component system sensor histidine kinase CreC	NA	Q8QKV7	Ectocarpus_siliculosus_virus	23.1	2.7e-09
>prophage 3
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	35581	40745	4651105		Bacillus_phage(33.33%)	3	NA	NA
WP_000373272.1|35581_37519_-	murein transglycosylase	NA	A0A1P8CWQ1	Bacillus_phage	36.4	1.8e-11
WP_000046770.1|37727_39395_+	energy-dependent translational throttle protein EttA	NA	A0A1V0SKJ1	Klosneuvirus	26.7	1.7e-42
WP_000093829.1|39512_40745_-	multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR	NA	A0A0C5K935	Enterococcus_phage	45.5	6.7e-89
>prophage 4
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	52883	54206	4651105		Geobacillus_virus(100.0%)	1	NA	NA
WP_000477840.1|52883_54206_-	thymidine phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	41.4	1.8e-79
>prophage 5
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	59752	62651	4651105		Salmonella_phage(50.0%)	3	NA	NA
WP_000490276.1|59752_59914_-	DUF1328 domain-containing protein	NA	A0A0N7CBR2	Salmonella_phage	66.0	1.8e-10
WP_000178963.1|60042_60660_-	molecular chaperone OsmY	NA	NA	NA	NA	NA
WP_000175965.1|61061_62651_-	peptide chain release factor 3	NA	D0R0F5	Streptococcus_phage	25.2	3.1e-30
>prophage 6
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	66424	67489	4651105		Bacillus_virus(100.0%)	1	NA	NA
WP_015406151.1|66424_67489_+	GGDEF domain-containing protein	NA	G3MA91	Bacillus_virus	33.1	9.4e-15
>prophage 7
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	72462	73742	4651105		Salmonella_phage(50.0%)	2	NA	NA
WP_000098578.1|72462_73002_+	primosomal protein DnaT	NA	T1SA92	Salmonella_phage	65.6	2.2e-28
WP_000799924.1|73004_73742_+	DNA replication protein DnaC	NA	V5UQI5	Shigella_phage	51.2	1.2e-64
>prophage 8
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	77033	78695	4651105		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_001527403.1|77033_78695_-	methyl-accepting chemotaxis protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	72.3	6.0e-08
>prophage 9
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	87345	88299	4651105	transposase	Sodalis_phage(100.0%)	1	NA	NA
WP_001527308.1|87345_88299_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	52.2	1.4e-65
>prophage 10
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	112564	122995	4651105	capsid,integrase	Enterobacteria_phage(60.0%)	13	111796:111813	133984:134001
111796:111813	attL	GGTTTAATTTCTTCCAGC	NA	NA	NA	NA
WP_080218154.1|112564_114898_-	DNA primase	NA	Q7M2A8	Enterobacteria_phage	84.9	0.0e+00
WP_000743144.1|114912_115233_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_001216597.1|115229_115457_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000979749.1|115453_116005_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	64.5	1.2e-29
WP_024134649.1|116590_116779_-	hypothetical protein	NA	NA	NA	NA	NA
WP_074421699.1|116691_117552_+|capsid	capsid protein	capsid	NA	NA	NA	NA
WP_142128308.1|117555_117795_+	hypothetical protein	NA	Q7M294	Enterobacteria_phage	59.3	2.4e-19
WP_024139042.1|118333_118519_-	hypothetical protein	NA	NA	NA	NA	NA
WP_106372056.1|118435_118630_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000775190.1|118808_119750_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080218162.1|119758_120214_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080218155.1|120236_121505_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	B7SYF8	Stenotrophomonas_phage	40.4	4.8e-74
WP_000152559.1|121975_122995_+	NAD(P)-dependent alcohol dehydrogenase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	30.1	2.1e-43
133984:134001	attR	GCTGGAAGAAATTAAACC	NA	NA	NA	NA
>prophage 11
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	130834	135781	4651105	tRNA	Mycoplasma_phage(50.0%)	3	NA	NA
WP_001527452.1|130834_132346_+	leucyl aminopeptidase	NA	Q6GYZ8	Mycoplasma_phage	38.7	6.4e-49
WP_000190720.1|132443_132926_+	DNA polymerase III subunit chi	NA	NA	NA	NA	NA
WP_001527326.1|132925_135781_+|tRNA	valine--tRNA ligase	tRNA	A0A1V0SK04	Klosneuvirus	37.2	1.3e-140
>prophage 12
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	147898	154453	4651105		Paramecium_bursaria_Chlorella_virus(33.33%)	6	NA	NA
WP_000013034.1|147898_148834_+	aspartate carbamoyltransferase	NA	M1HWF9	Paramecium_bursaria_Chlorella_virus	39.2	6.5e-52
WP_000148567.1|148846_149308_+	aspartate carbamoyltransferase regulatory subunit	NA	NA	NA	NA	NA
WP_000047544.1|149384_149771_+	2-iminobutanoate/2-iminopropanoate deaminase	NA	NA	NA	NA	NA
WP_015406162.1|150406_153115_-	magnesium-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	25.2	2.0e-45
WP_107320725.1|153255_153354_-	mgtA regulatory leader peptide MgtL	NA	NA	NA	NA	NA
WP_001181294.1|153505_154453_+	HTH-type transcriptional regulator TreR	NA	C6ZCU4	Enterobacteria_phage	21.5	3.2e-14
>prophage 13
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	158119	161459	4651105		uncultured_Caudovirales_phage(50.0%)	4	NA	NA
WP_000187818.1|158119_160258_+	anaerobic ribonucleoside-triphosphate reductase	NA	A0A2I7QNQ7	Vibrio_phage	64.6	1.5e-266
WP_001009178.1|160474_160939_+	anaerobic ribonucleoside-triphosphate reductase-activating protein	NA	K4F9T1	Cronobacter_phage	55.8	2.7e-51
WP_000220578.1|160942_161227_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	70.2	8.6e-32
WP_000212724.1|161216_161459_-	type II toxin-antitoxin system RelB/DinJ family antitoxin	NA	A0A2H4JBG1	uncultured_Caudovirales_phage	51.2	5.6e-16
>prophage 14
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	173381	175137	4651105		Klosneuvirus(50.0%)	2	NA	NA
WP_000853764.1|173381_174380_+	class 1 fructose-bisphosphatase	NA	A0A1V0SKX4	Klosneuvirus	42.4	1.3e-69
WP_000055079.1|174606_175137_+	inorganic diphosphatase	NA	A0A2H4J8U1	uncultured_Caudovirales_phage	63.3	4.2e-56
>prophage 15
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	210831	211995	4651105		Ralstonia_phage(100.0%)	1	NA	NA
WP_000943942.1|210831_211995_-	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	43.8	2.0e-82
>prophage 16
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	216024	220444	4651105		Lactococcus_phage(50.0%)	3	NA	NA
WP_000076354.1|216024_218463_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	33.3	2.6e-68
WP_001177632.1|218500_218926_-	nitric oxide-sensing transcriptional repressor NsrR	NA	NA	NA	NA	NA
WP_000527976.1|219145_220444_-	adenylosuccinate synthase	NA	W5S5V7	Pithovirus	35.6	8.4e-66
>prophage 17
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	225989	229175	4651105		Wolbachia_phage(50.0%)	2	NA	NA
WP_001527559.1|225989_227846_-	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	41.8	5.8e-60
WP_015406170.1|227855_229175_-	N-acetylmuramoyl-L-alanine amidase AmiB	NA	A0A067ZJB6	Vibrio_phage	29.2	1.8e-15
>prophage 18
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	234076	234622	4651105		Diachasmimorpha_longicaudata_entomopoxvirus(100.0%)	1	NA	NA
WP_001271546.1|234076_234622_-	oligoribonuclease	NA	Q8B5Y0	Diachasmimorpha_longicaudata_entomopoxvirus	41.6	4.5e-29
>prophage 19
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	241975	242953	4651105		Tupanvirus(100.0%)	1	NA	NA
WP_000004797.1|241975_242953_-	elongation factor P--(R)-beta-lysine ligase	NA	A0A2K9KZX5	Tupanvirus	29.1	1.7e-26
>prophage 20
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	246679	247213	4651105		Morganella_phage(100.0%)	1	NA	NA
WP_001527545.1|246679_247213_+	lipocalin family protein	NA	A0A1W6JNX6	Morganella_phage	54.1	6.1e-47
>prophage 21
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	252287	254271	4651105		Vibrio_phage(50.0%)	2	NA	NA
WP_080218161.1|252287_253934_-	chaperonin GroEL	NA	A0A2I7SAK5	Vibrio_phage	68.5	3.4e-189
WP_000027827.1|253977_254271_-	co-chaperone GroES	NA	K4F9I2	Cronobacter_phage	43.3	1.2e-12
>prophage 22
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	275979	280484	4651105		Escherichia_phage(100.0%)	4	NA	NA
WP_001112208.1|275979_276633_-	molecular chaperone	NA	A0A077SLS7	Escherichia_phage	72.4	7.9e-81
WP_001527235.1|276648_277422_-	dimethyl sulfoxide reductase anchor subunit	NA	A0A077SK59	Escherichia_phage	79.5	5.1e-103
WP_000816143.1|277414_278041_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	92.3	2.9e-120
WP_058674063.1|278054_280484_-	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	81.0	0.0e+00
>prophage 23
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	298664	307041	4651105		Bacillus_phage(25.0%)	8	NA	NA
WP_071585826.1|298664_299735_+	two-component system sensor histidine kinase PmrB	NA	W8CYF6	Bacillus_phage	25.3	7.8e-09
WP_000844399.1|299742_299832_-	LpxT activity modulator PmrR	NA	NA	NA	NA	NA
WP_000919710.1|299901_301404_-	glycine betaine/L-proline transporter ProP	NA	Q6JIH2	Burkholderia_virus	30.5	3.5e-55
WP_000056482.1|301871_302207_+	phnA family protein	NA	NA	NA	NA	NA
WP_001131302.1|302326_302770_+	VOC family metalloprotein YjdN	NA	NA	NA	NA	NA
WP_000602313.1|302891_303356_+	aminoalkylphosphonate N-acetyltransferase	NA	NA	NA	NA	NA
WP_000457033.1|303613_304522_+	lipid A hydroxylase LpxO	NA	H8ZJK8	Ostreococcus_tauri_virus	37.1	7.8e-34
WP_011233236.1|304893_307041_+	formate dehydrogenase H subunit alpha, selenocysteine-containing	NA	A0A077SK27	Escherichia_phage	24.5	1.0e-31
>prophage 24
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	316734	318693	4651105		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000083873.1|316734_318693_+	acetate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	40.4	5.7e-90
>prophage 25
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	324904	326254	4651105		Moraxella_phage(100.0%)	1	NA	NA
WP_000106907.1|324904_326254_-	guanine/hypoxanthine transporter GhxP	NA	A0A0R6PHV4	Moraxella_phage	71.4	6.7e-159
>prophage 26
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	331140	333207	4651105		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_000358575.1|331140_333207_-	peptidase domain-containing ABC transporter	NA	F2Y2R6	Organic_Lake_phycodnavirus	24.1	4.8e-15
>prophage 27
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	356364	359190	4651105		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000357725.1|356364_359190_+	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	55.7	0.0e+00
>prophage 28
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	363285	365812	4651105		Yellowstone_lake_mimivirus(50.0%)	2	NA	NA
WP_001147297.1|363285_364365_-	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	29.1	1.2e-28
WP_000918353.1|364396_365812_-	replicative DNA helicase	NA	A0A1B0VG30	Salmonella_phage	78.4	7.0e-199
>prophage 29
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	372546	373155	4651105		Lactococcus_phage(100.0%)	1	NA	NA
WP_000646079.1|372546_373155_-	repressor LexA	NA	Q9G0C2	Lactococcus_phage	38.0	1.0e-13
>prophage 30
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	380413	381523	4651105		Mycoplasma_phage(100.0%)	1	NA	NA
WP_000179176.1|380413_381523_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	NA	Q6GZ03	Mycoplasma_phage	47.2	6.2e-17
>prophage 31
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	404912	408596	4651105		Dickeya_phage(100.0%)	1	NA	NA
WP_001527379.1|404912_408596_-	methionine synthase	NA	A0A140XBC7	Dickeya_phage	90.2	1.3e-26
>prophage 32
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	429838	430111	4651105		Bacillus_phage(100.0%)	1	NA	NA
WP_001044509.1|429838_430111_-	DNA-binding protein HU-alpha	NA	A7KV42	Bacillus_phage	57.8	5.5e-20
>prophage 33
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	436957	437716	4651105		Indivirus(100.0%)	1	NA	NA
WP_080218242.1|436957_437716_+	HesA/MoeB/ThiF family protein	NA	A0A1V0SCZ9	Indivirus	31.1	1.0e-10
>prophage 34
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	441262	449591	4651105		Vibrio_phage(50.0%)	2	NA	NA
WP_000653965.1|441262_445486_-	DNA-directed RNA polymerase subunit beta'	NA	A0A2I7QNZ7	Vibrio_phage	27.1	5.0e-67
WP_000263105.1|445562_449591_-	DNA-directed RNA polymerase subunit beta	NA	A0A0N9R0J7	Chrysochromulina_ericina_virus	29.0	9.4e-23
>prophage 35
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	453707	456801	4651105		Tupanvirus(50.0%)	3	NA	NA
WP_000031748.1|453707_454892_-	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	26.5	2.6e-13
WP_001621476.1|455468_455642_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000023068.1|455850_456801_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.5	7.9e-29
>prophage 36
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	465587	467432	4651105		Acinetobacter_phage(100.0%)	1	NA	NA
WP_000591409.1|465587_467432_-	TonB-dependent vitamin B12 receptor BtuB	NA	A0A0P0I887	Acinetobacter_phage	30.0	2.2e-11
>prophage 37
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	488547	491722	4651105		Hokovirus(50.0%)	2	NA	NA
WP_015406191.1|488547_491049_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	27.4	3.6e-12
WP_000424861.1|491059_491722_+	fructose-6-phosphate aldolase	NA	M4SLG0	Cyanophage	34.1	9.3e-29
>prophage 38
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	514260	518871	4651105		Erwinia_phage(50.0%)	5	NA	NA
WP_001293360.1|514260_515592_+	HslU--HslV peptidase ATPase subunit	NA	W6AS21	Erwinia_phage	28.3	2.4e-44
WP_000139639.1|515658_516588_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA	NA
WP_000872918.1|516680_517166_+	ribonuclease E activity regulator RraA	NA	NA	NA	NA	NA
WP_000051370.1|517387_517627_-	septal ring assembly protein ZapB	NA	NA	NA	NA	NA
WP_000084285.1|518025_518871_+	aquaporin	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	28.6	2.0e-15
>prophage 39
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	529766	531239	4651105		Staphylococcus_phage(100.0%)	1	NA	NA
WP_142128315.1|529766_531239_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	NA	A0A2H4PQG7	Staphylococcus_phage	30.0	6.1e-20
>prophage 40
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	544294	548200	4651105		Feldmannia_irregularis_virus(33.33%)	5	NA	NA
WP_001033731.1|544294_544993_+	envelope stress response regulator transcription factor CpxR	NA	Q6XM27	Feldmannia_irregularis_virus	30.3	5.3e-06
WP_000580402.1|544989_546363_+	envelope stress sensor histidine kinase CpxA	NA	W8CYF6	Bacillus_phage	25.6	7.2e-15
WP_000133441.1|546413_546809_-	nuclear transport factor 2 family protein	NA	NA	NA	NA	NA
WP_076735184.1|546820_547573_-	6-N-hydroxylaminopurine resistance protein	NA	NA	NA	NA	NA
WP_000122632.1|547579_548200_-	superoxide dismutase [Mn]	NA	Q56AR7	Bacillus_thuringiensis_phage	58.9	2.4e-63
>prophage 41
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	565641	568692	4651105		Escherichia_phage(100.0%)	1	NA	NA
WP_139778962.1|565641_568692_+	formate dehydrogenase-N subunit alpha	NA	A0A077SK27	Escherichia_phage	24.3	1.6e-06
>prophage 42
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	572031	572961	4651105		Tupanvirus(100.0%)	1	NA	NA
WP_001127691.1|572031_572961_+	alpha/beta hydrolase	NA	A0A2K9L5W3	Tupanvirus	44.4	1.3e-07
>prophage 43
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	576891	579686	4651105		Escherichia_phage(50.0%)	3	NA	NA
WP_000059693.1|576891_577695_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	30.8	7.6e-25
WP_001528888.1|577728_578625_-	sugar kinase	NA	NA	NA	NA	NA
WP_000268248.1|578789_579686_+	sulfolactaldehyde 3-reductase	NA	D2K0C8	Staphylococcus_phage	100.0	1.5e-66
>prophage 44
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	598124	599174	4651105		Ectocarpus_siliculosus_virus(100.0%)	1	NA	NA
WP_000146194.1|598124_599174_+	nitrogen regulation protein NR(II)	NA	Q8QKV7	Ectocarpus_siliculosus_virus	26.1	1.5e-09
>prophage 45
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	604530	607317	4651105		Enterococcus_phage(100.0%)	1	NA	NA
WP_000249961.1|604530_607317_-	DNA polymerase I	NA	A0A0C5K9B9	Enterococcus_phage	26.8	2.9e-47
>prophage 46
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	619762	620377	4651105		Streptococcus_phage(100.0%)	1	NA	NA
WP_000378897.1|619762_620377_-	IMPACT family protein	NA	A0A1X9I5T8	Streptococcus_phage	39.3	6.2e-19
>prophage 47
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	631304	634740	4651105		uncultured_Mediterranean_phage(50.0%)	4	NA	NA
WP_000257554.1|631304_632084_-	Sec-independent protein translocase subunit TatC	NA	A0A1B1IVR7	uncultured_Mediterranean_phage	30.7	1.5e-25
WP_000459615.1|632086_632635_-	Sec-independent protein translocase subunit TatB	NA	NA	NA	NA	NA
WP_000508972.1|632638_632893_-	Sec-independent protein translocase subunit TatA	NA	NA	NA	NA	NA
WP_000187559.1|633099_634740_-	ubiquinone biosynthesis regulatory protein kinase UbiB	NA	M4R0M8	Ostreococcus_lucimarinus_virus	28.5	3.4e-40
>prophage 48
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	648983	650813	4651105		Catovirus(100.0%)	1	NA	NA
WP_015406206.1|648983_650813_-	ATP-dependent DNA helicase RecQ	NA	A0A1V0SBK0	Catovirus	37.4	2.6e-81
>prophage 49
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	655689	663569	4651105		Bacillus_phage(66.67%)	7	NA	NA
WP_000383436.1|655689_657852_-	DNA helicase II	NA	A7KV33	Bacillus_phage	37.1	1.7e-116
WP_001213560.1|657987_658704_-	5-amino-6-(5-phospho-D-ribitylamino)uracil phosphatase YigB	NA	NA	NA	NA	NA
WP_000132870.1|658703_659606_-	tyrosine recombinase XerC	NA	A0A142F1N9	Bacillus_phage	30.2	4.5e-26
WP_000812760.1|659602_660310_-	DUF484 domain-containing protein	NA	NA	NA	NA	NA
WP_001160671.1|660306_661131_-	diaminopimelate epimerase	NA	NA	NA	NA	NA
WP_000799903.1|661167_661371_-	lipoprotein	NA	NA	NA	NA	NA
WP_001528908.1|661556_663569_+	hypothetical protein	NA	A0A0U2C3T4	Salmonella_phage	96.6	3.3e-117
>prophage 50
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	680077	685580	4651105		Enterobacteria_phage(40.0%)	5	NA	NA
WP_000612076.1|680077_681208_-	dTDP-4-amino-4,6-dideoxygalactose transaminase	NA	A0A0F7LAY0	uncultured_marine_virus	40.9	3.3e-18
WP_000676080.1|681866_682091_-	sugar nucleotidyltransferase	NA	I7I009	Enterobacteria_phage	52.2	2.0e-07
WP_000822153.1|682123_683191_-	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.1	1.4e-98
WP_001528968.1|683190_684453_-	UDP-N-acetyl-D-mannosamine dehydrogenase	NA	M1H3J6	Paramecium_bursaria_Chlorella_virus	27.0	1.2e-24
WP_000866685.1|684449_685580_-	UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)	NA	A0A1V0SAG5	Catovirus	27.7	2.3e-27
>prophage 51
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	689703	695936	4651105		Vibrio_phage(40.0%)	6	NA	NA
WP_001280776.1|689703_690033_-	thioredoxin TrxA	NA	A0A1V0SD63	Indivirus	38.5	4.2e-14
WP_000047525.1|690176_691442_+	ATP-dependent RNA helicase RhlB	NA	E3T5E1	Cafeteria_roenbergensis_virus	31.7	3.7e-42
WP_001089447.1|691560_693042_+	guanosine-5'-triphosphate,3'-diphosphate diphosphatase	NA	NA	NA	NA	NA
WP_001238842.1|693081_695106_-	DNA helicase Rep	NA	A7KV33	Bacillus_phage	37.3	1.1e-112
WP_142128318.1|695205_695568_-	hypothetical protein	NA	A0A2I7SAC7	Vibrio_phage	27.7	2.1e-06
WP_142128320.1|695567_695936_-	hypothetical protein	NA	A0A126HGA3	Vibrio_phage	39.0	8.3e-11
>prophage 52
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	706871	708518	4651105		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_001528880.1|706871_708518_-	acetolactate synthase 2 catalytic subunit	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	31.5	1.2e-64
>prophage 53
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	723813	727831	4651105		Staphylococcus_phage(50.0%)	3	NA	NA
WP_058673973.1|723813_725319_-	ribose ABC transporter ATP-binding protein RbsA	NA	A0A2H4PQG7	Staphylococcus_phage	24.6	5.1e-14
WP_000715944.1|725326_725746_-	D-ribose pyranase	NA	NA	NA	NA	NA
WP_000102338.1|725962_727831_-	low affinity potassium transporter Kup	NA	M1I6H8	Paramecium_bursaria_Chlorella_virus	30.6	1.5e-63
>prophage 54
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	731124	732117	4651105		Heterosigma_akashiwo_virus(100.0%)	1	NA	NA
WP_000845120.1|731124_732117_-	aspartate--ammonia ligase	NA	A0A1C9C5F0	Heterosigma_akashiwo_virus	37.7	1.1e-49
>prophage 55
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	745001	748390	4651105		Chrysochromulina_ericina_virus(50.0%)	2	NA	NA
WP_000934847.1|745001_746372_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A0N7G7I9	Chrysochromulina_ericina_virus	38.7	8.7e-37
WP_000334069.1|746560_748390_+	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	A7IW18	Paramecium_bursaria_Chlorella_virus	43.2	5.6e-132
>prophage 56
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	752799	759715	4651105		Cyanophage(33.33%)	7	NA	NA
WP_000867131.1|752799_753840_+	phosphate ABC transporter substrate-binding protein PstS	NA	M4QHS4	Cyanophage	35.9	1.2e-46
WP_000741630.1|753975_754935_+	phosphate ABC transporter permease PstC	NA	NA	NA	NA	NA
WP_000212196.1|754934_755825_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_086007859.1|755908_756709_+	phosphate ABC transporter ATP-binding protein PstB	NA	W8CYL7	Bacillus_phage	30.6	2.7e-14
WP_000377800.1|756723_757449_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_001528219.1|757543_758209_-	6-phosphogluconate phosphatase	NA	NA	NA	NA	NA
WP_001519317.1|758377_759715_+	adenine permease AdeP	NA	A0A0R6PHV4	Moraxella_phage	37.1	1.4e-63
>prophage 57
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	766709	776499	4651105		Staphylococcus_phage(25.0%)	8	NA	NA
WP_001307474.1|766709_766967_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	56.7	5.4e-17
WP_000239725.1|766930_767290_-	ribonuclease P protein component	NA	NA	NA	NA	NA
WP_000831330.1|767306_767447_-	50S ribosomal protein L34	NA	NA	NA	NA	NA
WP_000059093.1|768107_769508_+	chromosomal replication initiator protein DnaA	NA	NA	NA	NA	NA
WP_000673474.1|769512_770613_+	DNA polymerase III subunit beta	NA	B4UTW9	Rhizobium_phage	34.7	4.1e-53
WP_000072047.1|771861_774276_+	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	34.6	2.2e-115
WP_001054595.1|774294_775191_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000975833.1|775305_776499_-	mandelate racemase/muconate lactonizing enzyme family protein	NA	Q6A202	Oenococcus_phage	32.7	3.6e-47
>prophage 58
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	782480	793694	4651105		Hokovirus(25.0%)	8	NA	NA
WP_015406219.1|782480_785216_-	TMAO reductase system sensor histidine kinase/response regulator TorS	NA	A0A1V0SGX0	Hokovirus	31.2	7.3e-35
WP_001528201.1|785295_786336_+	TMAO reductase system periplasmic protein TorT	NA	NA	NA	NA	NA
WP_001562512.1|786308_787001_-	two-component system response regulator TorR	NA	W8CYM9	Bacillus_phage	28.0	3.8e-17
WP_001230254.1|787130_788315_+	pentaheme c-type cytochrome TorC	NA	NA	NA	NA	NA
WP_080218232.1|788304_790857_+	trimethylamine-N-oxide reductase TorA	NA	A0A077SK27	Escherichia_phage	31.2	2.8e-73
WP_001528173.1|790849_791482_+	molecular chaperone TorD	NA	NA	NA	NA	NA
WP_000724469.1|791670_793071_+	c-type cytochrome	NA	NA	NA	NA	NA
WP_000888530.1|793076_793694_+	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A2R8FG22	Brazilian_cedratvirus	29.8	3.1e-10
>prophage 59
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	801335	802287	4651105		Cyanophage(50.0%)	2	NA	NA
WP_001532742.1|801335_801749_+	heat shock chaperone IbpA	NA	A0A1D7SU06	Cyanophage	37.0	1.0e-17
WP_001246919.1|801858_802287_+	heat shock chaperone IbpB	NA	A0A1D8KPX5	Synechococcus_phage	38.2	1.7e-15
>prophage 60
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	810790	815746	4651105		Salmonella_phage(50.0%)	6	NA	NA
WP_000828737.1|810790_811975_-	multidrug efflux MFS transporter EmrD	NA	S4TR35	Salmonella_phage	24.1	1.7e-12
WP_072202822.1|812177_813038_-	EamA family transporter	NA	NA	NA	NA	NA
WP_000117642.1|813130_813220_-	type I toxin-antitoxin system toxin TisB	NA	NA	NA	NA	NA
WP_142128322.1|813380_813578_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001541152.1|813852_813951_+	ilvB operon leader peptide IvbL	NA	NA	NA	NA	NA
WP_000168439.1|814057_815746_+	acetolactate synthase large subunit	NA	G8DDL3	Micromonas_pusilla_virus	30.7	4.2e-57
>prophage 61
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	832463	836945	4651105		Pseudomonas_phage(50.0%)	5	NA	NA
WP_000353909.1|832463_833243_-	hypothetical protein	NA	G9IA57	Pseudomonas_phage	38.0	4.5e-38
WP_001274841.1|833427_833751_-	DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_001217953.1|833734_834094_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_001004798.1|834309_835503_+	purine ribonucleoside efflux pump NepI	NA	NA	NA	NA	NA
WP_001270481.1|835562_836945_-	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	28.7	2.0e-41
>prophage 62
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	845308	851343	4651105	transposase	Sodalis_phage(33.33%)	4	NA	NA
WP_000749540.1|845308_846250_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	53.4	4.7e-66
WP_015406227.1|846292_847195_-	EamA family transporter	NA	NA	NA	NA	NA
WP_000392700.1|847701_848397_+	MgtC family protein	NA	G3MA03	Bacillus_virus	42.4	2.8e-15
WP_080218137.1|848616_851343_+	magnesium-translocating P-type ATPase	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	25.1	2.8e-34
>prophage 63
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	860056	861079	4651105		Wolbachia_phage(100.0%)	1	NA	NA
WP_001528290.1|860056_861079_-	virulence RhuM family protein	NA	Q9JMN3	Wolbachia_phage	47.0	1.4e-76
>prophage 64
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	870001	871393	4651105		environmental_Halophage(100.0%)	1	NA	NA
WP_000115428.1|870001_871393_-	xanthine/proton symporter XanP	NA	H9YQ34	environmental_Halophage	95.9	6.7e-69
>prophage 65
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	875641	880667	4651105		Bordetella_phage(33.33%)	4	NA	NA
WP_000280467.1|875641_877753_-	bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	NA	A0A291L9W9	Bordetella_phage	34.5	4.8e-10
WP_000135058.1|877771_878047_-	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_000046966.1|878101_878725_-	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	35.6	2.8e-19
WP_001528236.1|878981_880667_+	NAD-dependent DNA ligase LigB	NA	F8SJM3	Pseudomonas_phage	21.5	9.7e-22
>prophage 66
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	886643	891196	4651105		Xanthomonas_phage(33.33%)	6	NA	NA
WP_000717792.1|886643_887099_-	dUTP diphosphatase	NA	Q2NP83	Xanthomonas_phage	60.1	1.2e-48
WP_000380156.1|888474_889140_+	JAB domain-containing protein	NA	NA	NA	NA	NA
WP_001519051.1|889357_889594_+	50S ribosomal protein L28	NA	NA	NA	NA	NA
WP_001051798.1|889614_889782_+	50S ribosomal protein L33	NA	NA	NA	NA	NA
WP_080218138.1|889879_890689_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	F8WPX6	Bacillus_phage	31.8	1.3e-24
WP_001171884.1|890716_891196_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	43.8	1.2e-28
>prophage 67
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	906303	915802	4651105		Prochlorococcus_phage(16.67%)	9	NA	NA
WP_058673980.1|906303_907236_-	ADP-glyceromanno-heptose 6-epimerase	NA	R9S880	Prochlorococcus_phage	36.4	5.0e-36
WP_001213790.1|907438_908635_+	glycine C-acetyltransferase	NA	V5LQ39	Emiliania_huxleyi_virus	30.0	1.9e-35
WP_000645990.1|908644_909670_+	L-threonine 3-dehydrogenase	NA	R9TPW0	Vibrio_phage	84.6	2.1e-19
WP_142128326.1|909961_910996_+	glycosyltransferase	NA	A0A1V0SAH6	Catovirus	31.3	2.4e-07
WP_001135514.1|910982_911945_-	divergent polysaccharide deacetylase family protein	NA	NA	NA	NA	NA
WP_001214132.1|911948_913232_-	murein hydrolase activator EnvC	NA	G9BW84	Planktothrix_phage	30.3	6.1e-08
WP_001528242.1|913241_914786_-	2,3-bisphosphoglycerate-independent phosphoglycerate mutase	NA	NA	NA	NA	NA
WP_001156179.1|915033_915465_+	rhodanese-like domain-containing protein	NA	NA	NA	NA	NA
WP_001273795.1|915550_915802_+	glutaredoxin 3	NA	V9QKN6	Rhizobium_phage	53.4	2.2e-15
>prophage 68
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	935643	937494	4651105		Tupanvirus(100.0%)	1	NA	NA
WP_000582383.1|935643_937494_+	selenocysteine-specific translation elongation factor	NA	A0A2K9KZ60	Tupanvirus	24.7	5.8e-12
>prophage 69
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	965267	966263	4651105		Escherichia_coli_O157_typing_phage(100.0%)	1	NA	NA
WP_058673704.1|965267_966263_-	acyltransferase	NA	A0A0F6TJ51	Escherichia_coli_O157_typing_phage	27.1	2.2e-13
>prophage 70
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	970331	970589	4651105	transposase	Macacine_betaherpesvirus(100.0%)	1	NA	NA
WP_001631215.1|970331_970589_+|transposase	IS3 family transposase	transposase	A0A2I6AZV9	Macacine_betaherpesvirus	65.2	5.2e-20
>prophage 71
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	975978	978942	4651105		Morganella_phage(50.0%)	4	NA	NA
WP_000014594.1|975978_976191_-	RNA chaperone/antiterminator CspA	NA	A0A1W6JNX5	Morganella_phage	72.9	2.7e-22
WP_000455790.1|976478_976769_-	HTH-type transcriptional regulator	NA	NA	NA	NA	NA
WP_001528166.1|977207_977918_+	DUF3053 domain-containing protein	NA	NA	NA	NA	NA
WP_001528209.1|977967_978942_-	glyoxylate/hydroxypyruvate reductase GhrB	NA	M1HST2	Paramecium_bursaria_Chlorella_virus	26.7	2.1e-16
>prophage 72
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	994319	996313	4651105		Planktothrix_phage(50.0%)	2	NA	NA
WP_001196509.1|994319_995303_+	dipeptide ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.3	3.3e-14
WP_000103561.1|995299_996313_+	dipeptide ABC transporter ATP binding subunit DppF	NA	G3M9Y6	Bacillus_virus	28.9	9.6e-17
>prophage 73
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1025041	1025944	4651105		Burkholderia_virus(100.0%)	1	NA	NA
WP_000968870.1|1025041_1025944_-	LysR family transcriptional regulator	NA	Q6JIH3	Burkholderia_virus	24.5	3.4e-05
>prophage 74
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1040661	1042704	4651105		Indivirus(100.0%)	1	NA	NA
WP_001528193.1|1040661_1042704_+	oligopeptidase A	NA	A0A1V0SD92	Indivirus	23.2	3.6e-47
>prophage 75
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1050948	1053690	4651105		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001528258.1|1050948_1053690_+	ribosome-associated ATPase/putative transporter RbbA	NA	A0A2H4PQG7	Staphylococcus_phage	29.5	4.6e-21
>prophage 76
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1059071	1070734	4651105		Dickeya_phage(28.57%)	12	NA	NA
WP_058673711.1|1059071_1059737_-	7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter	NA	A0A2I7SAW6	Vibrio_phage	54.4	2.8e-57
WP_001541054.1|1059906_1060152_+	sulfurtransferase TusA	NA	A0A140XB86	Dickeya_phage	83.3	6.1e-10
WP_001528186.1|1060175_1061819_-	methyl-accepting chemotaxis citrate transducer	NA	A0A2H4J162	uncultured_Caudovirales_phage	29.4	4.0e-12
WP_001528131.1|1062018_1064217_-	Zn(II)/Cd(II)/Pb(II) translocating P-type ATPase ZntA	NA	E4ZFI9	Streptococcus_phage	35.8	6.5e-111
WP_000964735.1|1064297_1064924_-	lysoplasmalogenase	NA	A0A140XAH6	Dickeya_phage	64.6	3.8e-32
WP_000042852.1|1065065_1065437_+	DUF2500 domain-containing protein	NA	NA	NA	NA	NA
WP_001663114.1|1065458_1065731_-	DUF1145 family protein	NA	NA	NA	NA	NA
WP_000743275.1|1065717_1066314_-	16S rRNA (guanine(966)-N(2))-methyltransferase	NA	NA	NA	NA	NA
WP_001528170.1|1066439_1067915_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA	NA
WP_000617729.1|1067917_1068586_+	cell division ATP-binding protein FtsE	NA	A0A2H4PQG7	Staphylococcus_phage	24.6	1.9e-13
WP_001528283.1|1068578_1069634_+	cell division protein FtsX	NA	NA	NA	NA	NA
WP_000159621.1|1069879_1070734_+	RNA polymerase sigma factor RpoH	NA	A0A248SJA5	Salicola_phage	42.3	7.0e-45
>prophage 77
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1076525	1078008	4651105		Anomala_cuprea_entomopoxvirus(50.0%)	2	NA	NA
WP_001528264.1|1076525_1077293_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivG	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.0	1.5e-14
WP_000416114.1|1077294_1078008_+	high-affinity branched-chain amino acid ABC transporter ATP-binding protein LivF	NA	G9BWD6	Planktothrix_phage	30.7	3.7e-15
>prophage 78
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1081834	1083642	4651105		Planktothrix_phage(50.0%)	2	NA	NA
WP_000907842.1|1081834_1082905_+	sn-glycerol-3-phosphate import ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	32.5	2.0e-20
WP_000073548.1|1082901_1083642_+	glycerophosphodiester phosphodiesterase	NA	A0A0S2MYI4	Enterococcus_phage	25.0	1.4e-09
>prophage 79
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1105278	1107726	4651105		Dickeya_phage(100.0%)	1	NA	NA
WP_000993424.1|1105278_1107726_+	glycogen phosphorylase	NA	A0A140XAG6	Dickeya_phage	82.1	3.6e-33
>prophage 80
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1117241	1119635	4651105		Iris_mild_mosaic_virus(100.0%)	1	NA	NA
WP_001528143.1|1117241_1119635_+	maltodextrin phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	40.2	4.7e-14
>prophage 81
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1125695	1126622	4651105	transposase	Sodalis_phage(100.0%)	1	NA	NA
WP_001528287.1|1125695_1126622_-|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	50.8	1.7e-68
>prophage 82
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1133234	1136997	4651105		Bacillus_phage(66.67%)	3	NA	NA
WP_001157751.1|1133234_1133954_+	two-component system response regulator OmpR	NA	W8CYM9	Bacillus_phage	34.7	3.5e-29
WP_001253818.1|1133950_1135303_+	two-component system sensor histidine kinase EnvZ	NA	W8CYF6	Bacillus_phage	22.9	9.5e-12
WP_001265689.1|1135377_1136997_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	53.3	1.2e-141
>prophage 83
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1154034	1154871	4651105		Vibrio_phage(100.0%)	1	NA	NA
WP_000742132.1|1154034_1154871_+	adenine-specific DNA-methyltransferase	NA	A0A1S6L1V5	Vibrio_phage	48.7	1.9e-66
>prophage 84
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1172425	1176422	4651105		Acinetobacter_phage(50.0%)	3	NA	NA
WP_000601879.1|1172425_1172989_+	aminodeoxychorismate synthase component 2	NA	A0A0P0IKJ1	Acinetobacter_phage	55.8	1.2e-61
WP_001528172.1|1173074_1174292_+	aspartate aminotransferase family protein	NA	NA	NA	NA	NA
WP_000269311.1|1174334_1176422_-	membrane protein	NA	H9YQA8	environmental_Halophage	89.1	4.2e-67
>prophage 85
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1180861	1182769	4651105		Tupanvirus(100.0%)	1	NA	NA
WP_000634765.1|1180861_1182769_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	33.7	6.5e-75
>prophage 86
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1188730	1194301	4651105		uncultured_Caudovirales_phage(33.33%)	7	NA	NA
WP_017442189.1|1188730_1189117_+	sulfurtransferase complex subunit TusD	NA	A0A2H4JA39	uncultured_Caudovirales_phage	39.8	1.3e-19
WP_001646490.1|1189116_1189473_+	sulfurtransferase complex subunit TusC	NA	NA	NA	NA	NA
WP_000903398.1|1189480_1189768_+	sulfurtransferase complex subunit TusB	NA	NA	NA	NA	NA
WP_000246815.1|1189893_1190268_+	30S ribosomal protein S12	NA	NA	NA	NA	NA
WP_001138043.1|1190363_1190834_+	30S ribosomal protein S7	NA	NA	NA	NA	NA
WP_000124693.1|1190930_1193045_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.5	8.1e-58
WP_000031748.1|1193116_1194301_+	elongation factor Tu	NA	A0A2K9L516	Tupanvirus	26.5	2.6e-13
>prophage 87
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1214194	1218514	4651105	tRNA	Prochlorococcus_phage(33.33%)	6	NA	NA
WP_001285165.1|1214194_1215142_-|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	35.9	8.4e-07
WP_000114987.1|1215157_1215667_-	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.1	6.7e-19
WP_015406263.1|1215798_1216923_+	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_000460663.1|1216894_1217368_+	DUF494 domain-containing protein	NA	NA	NA	NA	NA
WP_001129708.1|1217394_1217937_+	DNA topoisomerase	NA	NA	NA	NA	NA
WP_001063621.1|1217941_1218514_+	L-threonylcarbamoyladenylate synthase type 1 TsaC	NA	S4VW33	Pandoravirus	27.2	2.9e-10
>prophage 88
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1232596	1235977	4651105		Bacillus_virus(50.0%)	3	NA	NA
WP_001145337.1|1232596_1234696_-	bifunctional diguanylate cyclase/phosphodiesterase	NA	G3MA91	Bacillus_virus	33.5	7.1e-22
WP_000620015.1|1234845_1235010_-	DUF2556 family protein	NA	NA	NA	NA	NA
WP_080218236.1|1235092_1235977_-	adenine-specific DNA-methyltransferase	NA	M4QNN5	Ostreococcus_lucimarinus_virus	33.2	4.4e-26
>prophage 89
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1248061	1249105	4651105		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_000913396.1|1248061_1249105_+	rod shape-determining protein	NA	F2Y0P3	Organic_Lake_phycodnavirus	22.3	6.7e-05
>prophage 90
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1267556	1268825	4651105		Oenococcus_phage(100.0%)	1	NA	NA
WP_000433390.1|1267556_1268825_+	SLC13/DASS family transporter	NA	Q6A201	Oenococcus_phage	33.0	1.1e-59
>prophage 91
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1275835	1277203	4651105	protease	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000716690.1|1275835_1277203_-|protease	serine endoprotease DegQ	protease	A0A1B1IT49	uncultured_Mediterranean_phage	26.3	2.7e-22
>prophage 92
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1282071	1286106	4651105	protease	Pseudomonas_phage(50.0%)	4	NA	NA
WP_000366112.1|1282071_1282572_+|protease	ClpXP protease specificity-enhancing factor	protease	A0A1S5R3H3	Pseudomonas_phage	55.8	2.5e-26
WP_000382926.1|1282680_1283472_+	transcriptional regulator NanR	NA	NA	NA	NA	NA
WP_001029667.1|1283606_1284500_+	N-acetylneuraminate lyase	NA	NA	NA	NA	NA
WP_000108071.1|1284615_1286106_+	sialic acid transporter NanT	NA	Q6JIH2	Burkholderia_virus	21.9	2.7e-07
>prophage 93
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1290895	1291999	4651105		Salmonella_phage(100.0%)	1	NA	NA
WP_001529295.1|1290895_1291999_-	DUF1016 domain-containing protein	NA	A0A0U2BZN7	Salmonella_phage	88.1	1.9e-74
>prophage 94
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1298765	1313668	4651105		Staphylococcus_phage(28.57%)	16	NA	NA
WP_001176888.1|1298765_1299695_+	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	33.3	2.6e-16
WP_000809807.1|1299788_1302125_+	aerobic respiration two-component sensor histidine kinase ArcB	NA	A0A1V0SGX0	Hokovirus	30.6	6.0e-38
WP_000719811.1|1302351_1303005_+	isoprenoid biosynthesis glyoxalase ElbB	NA	NA	NA	NA	NA
WP_001529270.1|1303001_1303730_+	monofunctional biosynthetic peptidoglycan transglycosylase	NA	NA	NA	NA	NA
WP_000576803.1|1303804_1304437_-	PhoP regulatory network protein YrbL	NA	NA	NA	NA	NA
WP_000216797.1|1304683_1304956_-	PTS phosphocarrier protein NPr	NA	NA	NA	NA	NA
WP_000243749.1|1304952_1305807_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	28.4	1.4e-05
WP_000609332.1|1305852_1306344_-	PTS IIA-like nitrogen regulatory protein PtsN	NA	NA	NA	NA	NA
WP_001176587.1|1306461_1306749_-	ribosome hibernation promoting factor	NA	NA	NA	NA	NA
WP_000809020.1|1306771_1308205_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_000224104.1|1308252_1308978_-	LPS export ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.4	7.1e-22
WP_000669770.1|1308984_1309539_-	lipopolysaccharide ABC transporter substrate-binding protein LptA	NA	NA	NA	NA	NA
WP_000047845.1|1309507_1310083_-	LPS export ABC transporter periplasmic protein LptC	NA	NA	NA	NA	NA
WP_000030029.1|1310079_1310646_-	3-deoxy-manno-octulosonate-8-phosphatase KdsC	NA	A0A140XBD6	Dickeya_phage	74.3	3.6e-53
WP_000018617.1|1310666_1311653_-	arabinose-5-phosphate isomerase KdsD	NA	A0A2P0VNK5	Tetraselmis_virus	31.2	1.1e-38
WP_000531566.1|1312855_1313668_+	phospholipid ABC transporter ATP-binding protein MlaF	NA	G3M9Y6	Bacillus_virus	30.2	9.7e-20
>prophage 95
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1317776	1319267	4651105		Vibrio_phage(50.0%)	2	NA	NA
WP_000444168.1|1317776_1318064_-	DNA-binding transcriptional regulator SfsB	NA	A0A2I7S995	Vibrio_phage	68.7	3.5e-17
WP_001047354.1|1318295_1319267_-	octaprenyl diphosphate synthase	NA	A0A1V0SE37	Indivirus	25.8	7.8e-08
>prophage 96
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1325989	1337716	4651105	protease	Micromonas_pusilla_virus(25.0%)	8	NA	NA
WP_001107480.1|1325989_1327924_+|protease	ATP-dependent zinc metalloprotease FtsH	protease	G8DDJ2	Micromonas_pusilla_virus	43.3	7.0e-117
WP_080218094.1|1328028_1328877_+	dihydropteroate synthase	NA	S4W084	Pandoravirus	30.0	3.2e-21
WP_000071171.1|1328869_1330207_+	phosphoglucosamine mutase	NA	NA	NA	NA	NA
WP_000272680.1|1330429_1330762_+	preprotein translocase subunit SecG	NA	NA	NA	NA	NA
WP_076735173.1|1331059_1332469_-	argininosuccinate synthase	NA	A0A140XAJ5	Dickeya_phage	92.9	3.2e-63
WP_000105461.1|1333030_1333483_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_001031038.1|1333510_1335013_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_000133064.1|1335037_1337716_+	translation initiation factor IF-2	NA	E3T4N3	Cafeteria_roenbergensis_virus	26.3	1.9e-24
>prophage 97
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1343251	1345141	4651105		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_000807248.1|1343251_1345141_+	DEAD/DEAH family ATP-dependent RNA helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	30.8	7.7e-52
>prophage 98
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1350920	1352217	4651105		Invertebrate_iridovirus(50.0%)	3	NA	NA
WP_000928379.1|1350920_1351238_-	GIY-YIG nuclease family protein	NA	S6DF82	Invertebrate_iridovirus	50.0	8.4e-12
WP_000380406.1|1351275_1351719_+	YhbP family protein	NA	NA	NA	NA	NA
WP_000037599.1|1351698_1352217_-	protein/nucleic acid deglycase	NA	A0A0N7KVR4	Yellowstone_lake_phycodnavirus	28.2	9.0e-11
>prophage 99
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1356704	1357568	4651105		Streptococcus_phage(100.0%)	1	NA	NA
WP_000812288.1|1356704_1357568_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	42.3	9.6e-50
>prophage 100
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1373612	1374758	4651105		Streptococcus_phage(100.0%)	1	NA	NA
WP_000706458.1|1373612_1374758_+	glycerate 2-kinase	NA	W6LM47	Streptococcus_phage	40.6	3.5e-47
>prophage 101
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1381025	1383320	4651105		Tetraselmis_virus(100.0%)	1	NA	NA
WP_001528020.1|1381025_1383320_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	41.2	9.7e-158
>prophage 102
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1396514	1397483	4651105		Enterobacteria_phage(100.0%)	1	NA	NA
WP_001098833.1|1396514_1397483_-	TerC family protein	NA	I7HPH5	Enterobacteria_phage	34.9	5.0e-39
>prophage 103
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1405480	1420514	4651105	tRNA	Salmonella_phage(16.67%)	12	NA	NA
WP_000094645.1|1405480_1407001_+	PAS domain-containing methyl-accepting chemotaxis protein	NA	A0A1B0V854	Salmonella_phage	47.8	8.4e-33
WP_000478462.1|1407387_1408956_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.5	2.2e-12
WP_001528114.1|1409830_1410598_+	siderophore-interacting protein	NA	NA	NA	NA	NA
WP_000237776.1|1410878_1411385_+	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA	NA
WP_001519776.1|1411508_1413356_-	RNA polymerase sigma factor RpoD	NA	A0A2I7SAT0	Vibrio_phage	33.7	8.4e-35
WP_000918862.1|1413505_1415251_-	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	38.4	2.1e-72
WP_001144069.1|1415486_1415702_-	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_001264396.1|1415929_1416943_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	59.5	6.3e-109
WP_001272785.1|1417165_1417783_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA	NA
WP_001528101.1|1417889_1418249_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA	NA
WP_080218095.1|1418346_1419168_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_001528087.1|1419272_1420514_-	multifunctional CCA addition/repair protein	NA	A0A0F6YPT7	Sinorhizobium_phage	47.7	5.0e-92
>prophage 104
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1425742	1427176	4651105		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_000867682.1|1425742_1427176_+	bifunctional D-glycero-beta-D-manno-heptose-7-phosphate kinase/D-glycero-beta-D-manno-heptose 1-phosphate adenylyltransferase HldE	NA	A0A1B1IUK5	uncultured_Mediterranean_phage	29.0	8.8e-40
>prophage 105
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1431192	1431846	4651105		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001076978.1|1431192_1431846_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	NA	A0A2H4PQS2	Staphylococcus_phage	43.8	1.6e-44
>prophage 106
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1437602	1439443	4651105		Ralstonia_phage(50.0%)	2	NA	NA
WP_000442833.1|1437602_1438766_-	glutathionylspermidine synthase family protein	NA	B2ZXR7	Ralstonia_phage	42.9	1.4e-88
WP_000831528.1|1438771_1439443_-	DUF1190 family protein	NA	A0A173GEW8	Erwinia_phage	44.9	5.7e-34
>prophage 107
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1443843	1445736	4651105		Bacillus_virus(100.0%)	1	NA	NA
WP_000195318.1|1443843_1445736_+	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	34.8	5.3e-93
>prophage 108
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1449051	1451832	4651105		Stx_converting_phage(50.0%)	2	NA	NA
WP_000731553.1|1449051_1449444_+	YgiW/YdeI family stress tolerance OB fold protein	NA	A0A1I9LJU6	Stx_converting_phage	48.6	2.7e-20
WP_001281853.1|1449573_1451832_+	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	35.8	3.0e-87
>prophage 109
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1459862	1465566	4651105		Pseudomonas_phage(33.33%)	5	NA	NA
WP_001274469.1|1459862_1462034_+	YgiQ family radical SAM protein	NA	M1QSD9	Pseudomonas_phage	70.8	2.0e-104
WP_000525382.1|1462236_1462431_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527932.1|1462588_1463044_-	HIT family protein	NA	Q5YEY9	Rock_bream_iridovirus	36.8	1.9e-20
WP_015406284.1|1463087_1464542_-	DASS family sodium-coupled anion symporter	NA	NA	NA	NA	NA
WP_000013104.1|1464738_1465566_-	2,5-didehydrogluconate reductase DkgA	NA	A0A2H4PQR8	Staphylococcus_phage	46.0	2.5e-63
>prophage 110
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1471507	1476438	4651105		Diadromus_pulchellus_ascovirus(50.0%)	6	NA	NA
WP_000019032.1|1471507_1472392_-	SDR family oxidoreductase	NA	F2NZ40	Diadromus_pulchellus_ascovirus	48.2	1.5e-66
WP_000665657.1|1472515_1472920_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000936444.1|1472906_1473317_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000433045.1|1473408_1473924_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000439335.1|1473994_1474489_+	TIGR00645 family protein	NA	NA	NA	NA	NA
WP_142128556.1|1474947_1476438_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	56.7	9.8e-10
>prophage 111
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1491861	1493334	4651105		Micromonas_pusilla_virus(100.0%)	1	NA	NA
WP_001527959.1|1491861_1493334_-	fructuronate reductase	NA	G9E6E2	Micromonas_pusilla_virus	28.5	7.1e-45
>prophage 112
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1499088	1500900	4651105		Vaccinia_virus(100.0%)	1	NA	NA
WP_080218098.1|1499088_1500900_-	beta-glucuronidase	NA	B9U1V4	Vaccinia_virus	82.1	3.4e-307
>prophage 113
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1524968	1526054	4651105		Geobacillus_virus(100.0%)	1	NA	NA
WP_000976289.1|1524968_1526054_-	membrane-bound lytic murein transglycosylase MltC	NA	A0A0H3V0Q1	Geobacillus_virus	39.0	5.8e-12
>prophage 114
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1543358	1544513	4651105		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001062140.1|1543358_1544513_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	63.9	1.5e-130
>prophage 115
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1557384	1558074	4651105		Bacillus_virus(100.0%)	1	NA	NA
WP_001528104.1|1557384_1558074_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	29.2	9.1e-11
>prophage 116
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1569155	1570388	4651105		Catovirus(100.0%)	1	NA	NA
WP_001151627.1|1569155_1570388_+	phosphoglycerate dehydrogenase	NA	A0A1V0SBV6	Catovirus	47.9	1.8e-102
>prophage 117
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1578655	1584359	4651105		Prochlorococcus_phage(50.0%)	4	NA	NA
WP_000194973.1|1578655_1581529_+	aminomethyl-transferring glycine dehydrogenase	NA	M4QFZ1	Prochlorococcus_phage	50.9	3.4e-261
WP_001751796.1|1581754_1581901_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527943.1|1581984_1582878_+	transporter	NA	NA	NA	NA	NA
WP_001230152.1|1582925_1584359_-	6-phospho-beta-glucosidase BglA	NA	A0A0B5JD41	Pandoravirus	26.2	2.0e-31
>prophage 118
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1588352	1598883	4651105	tRNA	Brevibacillus_phage(16.67%)	11	NA	NA
WP_000434300.1|1588352_1589249_+	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	28.9	6.1e-31
WP_000745614.1|1589272_1589986_+	bifunctional protein-disulfide isomerase/oxidoreductase DsbC	NA	NA	NA	NA	NA
WP_000813387.1|1589991_1591725_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.4	1.4e-63
WP_010989230.1|1591829_1592927_+	peptide chain release factor 2	NA	A0A0S4KWG0	Pseudomonas_phage	39.0	1.8e-05
WP_000003339.1|1592937_1594455_+|tRNA	lysine--tRNA ligase	tRNA	A0A1V0SAC0	Catovirus	37.1	4.8e-89
WP_000133994.1|1594530_1595076_-	isopentenyl-diphosphate Delta-isomerase	NA	NA	NA	NA	NA
WP_071585809.1|1595126_1595315_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000244328.1|1595340_1596099_+	peptidoglycan DD-metalloendopeptidase family protein	NA	I2E8W3	Clostridium_phage	39.5	1.2e-11
WP_001635492.1|1596375_1597182_-	DUF1460 domain-containing protein	NA	NA	NA	NA	NA
WP_001607915.1|1598115_1598301_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001038504.1|1598346_1598883_+	porin family protein	NA	A5LH44	Enterobacteria_phage	30.2	4.3e-16
>prophage 119
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1613541	1616073	4651105		Trichoplusia_ni_ascovirus(50.0%)	2	NA	NA
WP_000602478.1|1613541_1614303_+	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA	Q06VL0	Trichoplusia_ni_ascovirus	31.3	8.5e-18
WP_000253650.1|1614654_1616073_+	arabinose-proton symporter AraE	NA	O13311	Aichi_virus	26.7	3.5e-25
>prophage 120
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1626901	1633855	4651105		Moraxella_phage(33.33%)	6	NA	NA
WP_000895635.1|1626901_1627615_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	47.3	6.9e-46
WP_001274930.1|1627796_1628492_-	DNA mismatch repair endonuclease MutH	NA	NA	NA	NA	NA
WP_000564481.1|1629174_1629705_+	RNA pyrophosphohydrolase	NA	NA	NA	NA	NA
WP_099562393.1|1629717_1631946_+	phosphoenolpyruvate--protein phosphotransferase	NA	A0A1V0SGR7	Hokovirus	25.1	1.3e-10
WP_000204645.1|1632178_1633054_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_000816247.1|1633060_1633855_+	thymidylate synthase	NA	R4IFY1	Cronobacter_phage	63.2	2.6e-118
>prophage 121
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1639337	1655916	4651105	tRNA	Klosneuvirus(16.67%)	10	NA	NA
WP_058674048.1|1639337_1642226_+	pitrilysin	NA	A0A1V0SJA4	Klosneuvirus	23.8	2.1e-61
WP_058674049.1|1642218_1645764_+	exodeoxyribonuclease V subunit beta	NA	A7KV33	Bacillus_phage	21.6	1.4e-09
WP_000155138.1|1645760_1647596_+	exodeoxyribonuclease V subunit alpha	NA	A0A2P0VMS9	Tetraselmis_virus	25.2	1.4e-18
WP_001528000.1|1647698_1649030_-	amino-acid N-acetyltransferase	NA	NA	NA	NA	NA
WP_015406301.1|1649262_1650516_+	N-acetylmuramoyl-L-alanine amidase AmiC	NA	E5DV68	Deep-sea_thermophilic_phage	28.9	1.9e-14
WP_058674050.1|1651015_1652113_+	murein transglycosylase A	NA	NA	NA	NA	NA
WP_001528031.1|1652222_1653029_+|tRNA	tRNA cyclic N6-threonylcarbamoyladenosine(37) synthase TcdA	tRNA	S4VW33	Pandoravirus	32.8	1.9e-15
WP_014343890.1|1653080_1653968_-	EamA family transporter RarD	NA	NA	NA	NA	NA
WP_001527998.1|1654267_1654711_-	cysteine desulfurase sulfur acceptor subunit CsdE	NA	NA	NA	NA	NA
WP_001527933.1|1654710_1655916_-	cysteine desulfurase CsdA	NA	Q2XUY6	environmental_halophage	35.5	8.1e-71
>prophage 122
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1667459	1668317	4651105		Bacillus_phage(100.0%)	1	NA	NA
WP_142128330.1|1667459_1668317_-	flap endonuclease Xni	NA	F8WQ40	Bacillus_phage	31.2	7.4e-10
>prophage 123
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1673141	1673990	4651105		Vibrio_phage(100.0%)	1	NA	NA
WP_058674051.1|1673141_1673990_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	A0A2I7SAX1	Vibrio_phage	37.5	2.7e-41
>prophage 124
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1681410	1686706	4651105		Streptococcus_phage(33.33%)	3	NA	NA
WP_000706486.1|1681410_1682553_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	41.0	2.0e-47
WP_000186400.1|1682596_1685353_-	two-component sensor histidine kinase BarA	NA	A0A1V0SGX0	Hokovirus	29.3	3.0e-52
WP_015406304.1|1685410_1686706_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A2K5B251	Erysipelothrix_phage	28.0	2.4e-36
>prophage 125
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1691489	1695315	4651105		Only_Syngen_Nebraska_virus(33.33%)	3	NA	NA
WP_000210864.1|1691489_1693127_+	CTP synthase (glutamine hydrolyzing)	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	51.1	2.1e-154
WP_000036734.1|1693209_1694508_+	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	58.6	1.3e-130
WP_001199956.1|1694643_1695315_+	7-carboxy-7-deazaguanine synthase QueE	NA	A0A2I7S8X1	Vibrio_phage	24.6	3.9e-14
>prophage 126
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1707976	1710008	4651105		Hokovirus(50.0%)	2	NA	NA
WP_001528082.1|1707976_1709416_+	sulfate adenylyltransferase subunit CysN	NA	A0A1V0SGC3	Hokovirus	26.5	2.1e-33
WP_001173661.1|1709402_1710008_+	adenylyl-sulfate kinase	NA	A0A2K9L4R9	Tupanvirus	39.6	2.9e-29
>prophage 127
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1713118	1723545	4651105		Escherichia_phage(50.0%)	12	NA	NA
WP_001221538.1|1713118_1713880_+	5'/3'-nucleotidase SurE	NA	A0A1B1ITZ2	uncultured_Mediterranean_phage	48.8	1.4e-57
WP_000253545.1|1713873_1714500_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	NA	A0A1B1IU40	uncultured_Mediterranean_phage	49.4	4.8e-35
WP_001272628.1|1714675_1715809_+	murein hydrolase activator NlpD	NA	D7RWE0	Brochothrix_phage	35.6	5.0e-06
WP_000081498.1|1715871_1716864_+	RNA polymerase sigma factor RpoS	NA	G8CLC7	Synechococcus_phage	37.6	6.1e-32
WP_000562967.1|1716908_1717145_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000863168.1|1717155_1718583_-	UbiD family decarboxylase	NA	NA	NA	NA	NA
WP_001237180.1|1718582_1719176_-	UbiX family flavin prenyltransferase	NA	NA	NA	NA	NA
WP_000423338.1|1719346_1719751_+	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_000613179.1|1719769_1720534_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	57.5	1.1e-70
WP_000206958.1|1720730_1721654_+	NAD(P)-dependent oxidoreductase	NA	A0A077SLF7	Escherichia_phage	77.4	1.7e-116
WP_000912487.1|1721647_1722910_+	3-oxo-tetronate kinase	NA	A0A077SLJ7	Escherichia_phage	61.8	1.7e-132
WP_058673991.1|1722906_1723545_+	aldolase	NA	A0A077SK32	Escherichia_phage	74.5	4.4e-84
>prophage 128
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1729510	1733711	4651105		Catovirus(50.0%)	3	NA	NA
WP_080218106.1|1729510_1732078_-	DNA mismatch repair protein MutS	NA	A0A1V0SC35	Catovirus	21.2	4.3e-29
WP_023139931.1|1732235_1732646_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527958.1|1733054_1733711_-	protein-serine/threonine phosphatase	NA	Q71TJ1	Escherichia_phage	46.0	2.3e-48
>prophage 129
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1737339	1739028	4651105		Vibrio_phage(100.0%)	1	NA	NA
WP_000848099.1|1737339_1739028_+	type III secretion system outer membrane ring protein InvG	NA	R9TEZ5	Vibrio_phage	27.8	1.8e-15
>prophage 130
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1772509	1773331	4651105		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000083153.1|1772509_1773331_-	iron/manganese ABC transporter ATP-binding protein SitB	NA	A0A2R8FG22	Brazilian_cedratvirus	26.5	3.1e-13
>prophage 131
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1797246	1798212	4651105		Tetraselmis_virus(100.0%)	1	NA	NA
WP_001278206.1|1797246_1798212_-	arabinose-5-phosphate isomerase GutQ	NA	A0A2P0VNK5	Tetraselmis_virus	34.5	3.0e-36
>prophage 132
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1804118	1811503	4651105	tRNA	Pseudomonas_phage(20.0%)	7	NA	NA
WP_001528025.1|1804118_1804616_+	nicotinamide-nucleotide amidase	NA	B5TK85	Pseudomonas_phage	51.6	3.4e-31
WP_000963150.1|1804700_1805762_+	recombinase RecA	NA	A0A2D1GPX2	Mycobacterium_phage	63.8	3.0e-114
WP_001294867.1|1805878_1806379_+	recombination regulator RecX	NA	NA	NA	NA	NA
WP_001277278.1|1806375_1806582_+	hypothetical protein	NA	NA	NA	NA	NA
WP_080218108.1|1806614_1809245_+|tRNA	alanine--tRNA ligase	tRNA	A0A1V0SK38	Klosneuvirus	38.3	4.6e-79
WP_000906486.1|1809479_1809665_+	carbon storage regulator CsrA	NA	A0A2I7RT00	Vibrio_phage	66.7	4.9e-12
WP_001528554.1|1810936_1811503_+	fructose-1-phosphate/6-phosphogluconate phosphatase	NA	M1I5S4	Acanthocystis_turfacea_Chlorella_virus	27.1	1.6e-13
>prophage 133
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1824890	1828388	4651105		Mycobacterium_phage(33.33%)	3	NA	NA
WP_058673999.1|1824890_1825850_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A0M4S3B4	Mycobacterium_phage	72.1	2.1e-130
WP_058674000.1|1825860_1828005_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	V9VI16	Lactococcus_phage	48.6	1.4e-195
WP_001275402.1|1827977_1828388_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A142F1R4	Bacillus_phage	41.8	4.3e-16
>prophage 134
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1835088	1839092	4651105		Clostridium_phage(50.0%)	4	NA	NA
WP_000522406.1|1835088_1835538_+	peptidoglycan-binding protein LysM	NA	A0A090DBR9	Clostridium_phage	38.2	7.5e-06
WP_000126152.1|1835559_1836237_-	DNA-binding transcriptional regulator CsiR	NA	NA	NA	NA	NA
WP_079915166.1|1836187_1837678_-	GABA permease	NA	NA	NA	NA	NA
WP_001095554.1|1837808_1839092_-	4-aminobutyrate--2-oxoglutarate transaminase	NA	A0A1V0SKB7	Klosneuvirus	31.1	6.0e-32
>prophage 135
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1859467	1865855	4651105		Bacillus_phage(50.0%)	4	NA	NA
WP_001528633.1|1859467_1863124_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	28.8	1.4e-44
WP_001528704.1|1863204_1864320_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_071587898.1|1864424_1864607_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000190917.1|1865282_1865855_-	flagellar phase variation DNA invertase Hin	NA	A0A0A7NPV4	Enterobacteria_phage	72.1	2.0e-67
>prophage 136
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1868890	1874703	4651105		Enterobacteria_phage(100.0%)	8	NA	NA
WP_000783706.1|1868890_1871224_-	toprim domain-containing protein	NA	Q7M2A8	Enterobacteria_phage	83.5	0.0e+00
WP_032074336.1|1871238_1871559_-	DUF5375 domain-containing protein	NA	NA	NA	NA	NA
WP_001216598.1|1871555_1871783_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000980354.1|1871779_1872337_-	ash family protein	NA	Q7M2A7	Enterobacteria_phage	66.4	2.7e-29
WP_129361496.1|1872551_1872755_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000194694.1|1873140_1873878_+	hypothetical protein	NA	Q7M2A2	Enterobacteria_phage	65.3	3.1e-81
WP_000984206.1|1873874_1874120_+	transcriptional regulator	NA	Q7M294	Enterobacteria_phage	76.5	4.8e-31
WP_000210079.1|1874136_1874703_+	phage polarity suppression protein	NA	Q7M2A1	Enterobacteria_phage	62.2	3.8e-55
>prophage 137
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1877792	1882956	4651105	integrase	Escherichia_phage(50.0%)	3	1873668:1873683	1881601:1881616
1873668:1873683	attL	GCAGCAGGTGAAAGCG	NA	NA	NA	NA
WP_000124716.1|1877792_1878986_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A1B5FPC6	Escherichia_phage	49.6	2.6e-106
WP_072101562.1|1879604_1880768_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA	NA
WP_001528595.1|1880775_1882956_-	type I secretion system permease/ATPase	NA	F2Y302	Organic_Lake_phycodnavirus	34.0	9.9e-19
1881601:1881616	attR	CGCTTTCACCTGCTGC	NA	NA	NA	NA
>prophage 138
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1896516	1896999	4651105		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001518569.1|1896516_1896999_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	47.4	5.2e-29
>prophage 139
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1908712	1911954	4651105		Pseudomonas_phage(50.0%)	3	NA	NA
WP_001030990.1|1908712_1909933_-	diguanylate cyclase DgcN	NA	A0A2K8I9Y5	Pseudomonas_phage	37.0	1.7e-07
WP_001212375.1|1909925_1910444_-	YfiR family protein	NA	NA	NA	NA	NA
WP_001168062.1|1910883_1911954_+	3-deoxy-7-phosphoheptulonate synthase AroF	NA	A0A0F6R6T6	Escherichia_coli_O157_typing_phage	51.8	2.4e-90
>prophage 140
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1918739	1921313	4651105		Enterobacteria_phage(100.0%)	1	NA	NA
WP_001235092.1|1918739_1921313_+	ATP-dependent chaperone ClpB	NA	H6X3M6	Enterobacteria_phage	35.5	2.6e-127
>prophage 141
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1927196	1929057	4651105		Prochlorococcus_phage(50.0%)	2	NA	NA
WP_000985653.1|1927196_1927652_+	DUF4385 domain-containing protein	NA	E3SMI8	Prochlorococcus_phage	50.0	3.0e-34
WP_000807820.1|1927755_1929057_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	30.6	9.1e-44
>prophage 142
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1934358	1940528	4651105	tRNA	Achromobacter_phage(25.0%)	6	NA	NA
WP_001098732.1|1934358_1934778_-	thioredoxin TrxC	NA	A0A0K2FIM3	Achromobacter_phage	40.6	1.2e-16
WP_000997366.1|1934981_1936019_+|tRNA	tRNA/rRNA methyltransferase	tRNA	NA	NA	NA	NA
WP_000179978.1|1936134_1936824_-	uracil-DNA glycosylase	NA	A0A172DS90	Canid_alphaherpesvirus	49.5	4.6e-55
WP_000627811.1|1937142_1937526_+	autonomous glycyl radical cofactor GrcA	NA	Q7Y524	Enterobacteria_phage	74.0	6.1e-33
WP_000365861.1|1938276_1939176_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000219174.1|1939193_1940528_-	ATP-dependent RNA helicase SrmB	NA	A0A1B1IS59	uncultured_Mediterranean_phage	29.7	1.6e-43
>prophage 143
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1946613	1971421	4651105	tail,lysis,integrase	Salmonella_phage(50.0%)	28	1942948:1942961	1954012:1954025
1942948:1942961	attL	CCGCGCCGCTGCCG	NA	NA	NA	NA
WP_001007935.1|1946613_1947843_+|integrase	site-specific integrase	integrase	H6WRW7	Salmonella_phage	94.1	6.4e-233
WP_014344516.1|1947820_1948105_-	excisionase Xis	NA	H6WRW8	Salmonella_phage	87.2	1.1e-42
WP_016062826.1|1948145_1948385_-	DUF4060 family protein	NA	H6WRW9	Salmonella_phage	100.0	3.3e-37
WP_058674076.1|1948809_1949559_+	ATP-binding protein	NA	S4TNF5	Salmonella_phage	99.6	1.2e-138
WP_142128335.1|1949569_1949944_+	DUF977 family protein	NA	H6WRX9	Salmonella_phage	97.3	5.0e-56
WP_000065102.1|1949912_1950431_+	ead/Ea22-like family protein	NA	S4TNP2	Salmonella_phage	89.8	1.4e-40
WP_000704096.1|1950457_1951450_-	peptidase M85	NA	NA	NA	NA	NA
WP_058674074.1|1951719_1951953_+	DinI family protein	NA	H6WRY5	Salmonella_phage	98.7	2.1e-36
WP_001533556.1|1952147_1952363_+	hypothetical protein	NA	A5LH82	Enterobacteria_phage	47.5	2.2e-08
WP_080218244.1|1952340_1952829_+	lysozyme	NA	M9P0E5	Enterobacteria_phage	69.4	1.9e-58
WP_001673842.1|1952825_1953317_+|lysis	lysis protein	lysis	S4TNN7	Salmonella_phage	74.2	9.6e-55
WP_000669689.1|1953505_1953907_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024138937.1|1953944_1954130_-	hypothetical protein	NA	NA	NA	NA	NA
1954012:1954025	attR	CGGCAGCGGCGCGG	NA	NA	NA	NA
WP_058674088.1|1954185_1954677_+	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	56.9	2.9e-43
WP_000218814.1|1955496_1955739_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142128337.1|1955793_1958166_+|tail	phage tail protein	tail	A0A0K2FIZ6	Escherichia_phage	64.0	4.0e-90
WP_000143150.1|1958165_1958744_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	92.1	5.4e-97
WP_071530035.1|1958840_1959041_-	PagK	NA	NA	NA	NA	NA
WP_080218228.1|1959684_1963050_+	DUF4765 family protein	NA	A0A0N7KZG3	Stx2-converting_phage	50.6	0.0e+00
WP_000790154.1|1963576_1965376_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	24.9	7.2e-23
WP_000002559.1|1965392_1966367_+	signal peptidase I	NA	NA	NA	NA	NA
WP_058674028.1|1966639_1967320_+	ribonuclease III	NA	A0A2K9L5P0	Tupanvirus	31.8	5.6e-21
WP_000102230.1|1967316_1968222_+	GTPase Era	NA	NA	NA	NA	NA
WP_000399380.1|1968233_1968962_+	DNA repair protein RecO	NA	NA	NA	NA	NA
WP_000818972.1|1968973_1969705_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA	NA
WP_000986043.1|1969704_1970085_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_001196290.1|1970196_1970457_-	YfhL family 4Fe-4S dicluster ferredoxin	NA	A0A1B1IWY9	uncultured_Mediterranean_phage	52.3	1.4e-17
WP_001022476.1|1970494_1971421_-	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	24.4	2.3e-09
>prophage 144
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1980005	1989994	4651105		Bacillus_phage(50.0%)	5	NA	NA
WP_000970049.1|1980005_1983893_+	phosphoribosylformylglycinamidine synthase	NA	A9YX36	Burkholderia_phage	57.6	6.1e-128
WP_001676035.1|1984540_1985971_+	two component system sensor histidine kinase QseE/GlrK	NA	W8CYF6	Bacillus_phage	26.1	1.5e-15
WP_000625591.1|1986732_1988070_+	two-component system response regulator GlrR	NA	W8CYM9	Bacillus_phage	29.2	1.8e-10
WP_000717694.1|1988146_1988485_+	nitrogen regulatory protein P-II	NA	NA	NA	NA	NA
WP_000856788.1|1988533_1989994_-	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	28.8	2.2e-46
>prophage 145
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	1997205	1998459	4651105		Aeromonas_phage(100.0%)	1	NA	NA
WP_000919178.1|1997205_1998459_+	serine hydroxymethyltransferase	NA	A0A240F3L3	Aeromonas_phage	53.0	1.3e-100
>prophage 146
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2005877	2015828	4651105	tRNA	Heterosigma_akashiwo_virus(16.67%)	12	NA	NA
WP_000174950.1|2005877_2006756_-	alpha/beta hydrolase	NA	A0A1C9C5K3	Heterosigma_akashiwo_virus	24.7	1.7e-14
WP_000553473.1|2006900_2007704_-	inositol-1-monophosphatase	NA	NA	NA	NA	NA
WP_000940032.1|2007822_2008554_+|tRNA	tRNA (cytosine(32)/uridine(32)-2'-O)-methyltransferase TrmJ	tRNA	NA	NA	NA	NA
WP_001241346.1|2008712_2009207_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA	NA
WP_000775263.1|2009387_2010602_+	cysteine desulfurase	NA	A0A1X7C038	Faustovirus	32.6	1.2e-34
WP_000331704.1|2010629_2011016_+	Fe-S cluster assembly scaffold IscU	NA	A0A218MKD1	uncultured_virus	78.9	2.4e-53
WP_000028952.1|2011044_2011368_+	iron-sulfur cluster assembly protein IscA	NA	A0A2H4N7N5	Lake_Baikal_phage	48.6	4.1e-22
WP_001528546.1|2011563_2012079_+	co-chaperone HscB	NA	NA	NA	NA	NA
WP_001196651.1|2012091_2013942_+	Fe-S protein assembly chaperone HscA	NA	A0A167RF67	Powai_lake_megavirus	39.1	2.7e-102
WP_001124466.1|2013943_2014279_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA	NA
WP_000523621.1|2014290_2014491_+	Fe-S cluster assembly protein IscX	NA	NA	NA	NA	NA
WP_000133546.1|2014544_2015828_+	aminopeptidase PepB	NA	Q6GYZ8	Mycoplasma_phage	38.2	1.2e-35
>prophage 147
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2026626	2031875	4651105		Escherichia_phage(66.67%)	5	NA	NA
WP_077906012.1|2026626_2029032_+	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	38.2	1.1e-140
WP_001528728.1|2029028_2029658_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	56.4	9.4e-63
WP_001528647.1|2029650_2030460_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_000247782.1|2030459_2031323_+	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_000963846.1|2031443_2031875_+	nucleoside-diphosphate kinase	NA	A0A167REB2	Powai_lake_megavirus	37.1	1.1e-17
>prophage 148
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2064211	2067188	4651105		Bodo_saltans_virus(50.0%)	2	NA	NA
WP_058673746.1|2064211_2065561_-	exodeoxyribonuclease VII large subunit	NA	A0A2H4UVM9	Bodo_saltans_virus	35.3	9.7e-41
WP_080218198.1|2065721_2067188_+	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	38.5	1.2e-87
>prophage 149
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2070429	2075648	4651105		Escherichia_phage(75.0%)	6	NA	NA
WP_000782337.1|2070429_2071893_-	DUF1254 domain-containing protein	NA	M1H738	Paramecium_bursaria_Chlorella_virus	25.6	3.6e-33
WP_001528718.1|2071907_2073386_-	DUF1254 domain-containing protein	NA	NA	NA	NA	NA
WP_100068659.1|2073787_2074093_+	ATPase	NA	NA	NA	NA	NA
WP_001528683.1|2074157_2074697_-	DUF5384 family protein	NA	G9L6F0	Escherichia_phage	76.0	6.7e-25
WP_001009636.1|2074712_2075228_-	glycine zipper 2TM domain-containing protein	NA	G9L6F1	Escherichia_phage	85.4	1.8e-48
WP_000075924.1|2075456_2075648_-	DUF2633 family protein	NA	G9L6F2	Escherichia_phage	84.1	6.4e-23
>prophage 150
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2082110	2087385	4651105		Prochlorococcus_phage(25.0%)	7	NA	NA
WP_001028589.1|2082110_2082749_-	phosphoribosylglycinamide formyltransferase	NA	E3SNR5	Prochlorococcus_phage	43.4	9.6e-31
WP_000130477.1|2082748_2083786_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	A0A1D7SE90	Cyanophage	41.8	2.9e-69
WP_057521204.1|2083821_2084001_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000706208.1|2084199_2084826_+	uracil phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000198341.1|2084913_2086203_+	uracil permease	NA	Q9KX94	Enterobacteria_phage	36.6	6.6e-63
WP_000100388.1|2086273_2086999_+	DnaA inactivator Hda	NA	NA	NA	NA	NA
WP_000132650.1|2087025_2087385_-	arsenate reductase (glutaredoxin)	NA	A0A2H4J8T1	uncultured_Caudovirales_phage	45.6	1.1e-18
>prophage 151
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2092967	2094107	4651105		Streptococcus_phage(100.0%)	1	NA	NA
WP_000706384.1|2092967_2094107_+	glycerate kinase	NA	W6LM47	Streptococcus_phage	39.8	5.5e-45
>prophage 152
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2097445	2098159	4651105		Synechococcus_phage(100.0%)	1	NA	NA
WP_001171630.1|2097445_2098159_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	M4R1E8	Synechococcus_phage	37.5	9.1e-38
>prophage 153
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2116781	2117732	4651105		Cyanophage(100.0%)	1	NA	NA
WP_001072443.1|2116781_2117732_-	transaldolase	NA	A0A127KNC6	Cyanophage	30.3	8.2e-10
>prophage 154
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2136489	2146091	4651105		Paenibacillus_phage(20.0%)	11	NA	NA
WP_000102880.1|2136489_2137359_-	N-acetylmuramoyl-L-alanine amidase AmiA	NA	A0A0N9SGH1	Paenibacillus_phage	31.9	2.8e-17
WP_014344511.1|2137460_2137997_+	GNAT family acetyltransferase	NA	NA	NA	NA	NA
WP_000842940.1|2137983_2138433_+	DUF2919 domain-containing protein	NA	NA	NA	NA	NA
WP_000838968.1|2138494_2139070_+	RpoE-regulated lipoprotein	NA	NA	NA	NA	NA
WP_000084583.1|2139164_2140064_+	porphyrinogen peroxidase	NA	S4VVJ7	Pandoravirus	33.3	3.8e-25
WP_000517460.1|2140301_2141093_+	SDR family oxidoreductase UcpA	NA	Q06VL0	Trichoplusia_ni_ascovirus	30.6	1.5e-17
WP_001528664.1|2141250_2142267_+	thiosulfate/sulfate ABC transporter substrate-binding protein CysP	NA	NA	NA	NA	NA
WP_000881746.1|2142266_2143100_+	sulfate/thiosulfate ABC transporter permease CysT	NA	NA	NA	NA	NA
WP_000852706.1|2143099_2143975_+	sulfate/thiosulfate ABC transporter permease CysW	NA	NA	NA	NA	NA
WP_001528536.1|2143964_2145059_+	sulfate/thiosulfate ABC transporter ATP-binding protein CysA	NA	G3M9Y6	Bacillus_virus	32.7	2.1e-25
WP_001093874.1|2145179_2146091_+	cysteine synthase CysM	NA	A0A1X9I5F1	Streptococcus_phage	41.8	7.7e-58
>prophage 155
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2150484	2160482	4651105		Hokovirus(25.0%)	9	NA	NA
WP_000623114.1|2150484_2152212_-	phosphoenolpyruvate-protein phosphotransferase PtsI	NA	A0A1V0SGR7	Hokovirus	31.1	7.4e-17
WP_000487600.1|2152260_2152518_-	phosphocarrier protein Hpr	NA	NA	NA	NA	NA
WP_000036904.1|2152901_2153873_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	51.0	7.4e-75
WP_000255004.1|2154184_2154946_-	sulfate transporter CysZ	NA	NA	NA	NA	NA
WP_000983114.1|2155177_2156164_+	cell division protein ZipA	NA	NA	NA	NA	NA
WP_058673757.1|2156235_2158251_+	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	42.8	1.5e-146
WP_001519708.1|2158252_2158471_+	DUF3820 family protein	NA	NA	NA	NA	NA
WP_000765569.1|2158467_2159466_-	bile acid:sodium symporter	NA	NA	NA	NA	NA
WP_001109838.1|2159555_2160482_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	25.7	1.4e-09
>prophage 156
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2189423	2190344	4651105		Morganella_phage(100.0%)	1	NA	NA
WP_000484431.1|2189423_2190344_-	kdo(2)-lipid IV(A) palmitoleoyltransferase	NA	A0A1W6JP29	Morganella_phage	53.5	1.1e-75
>prophage 157
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2199156	2200098	4651105		Enterobacteria_phage(100.0%)	1	NA	NA
WP_000377772.1|2199156_2200098_-	membrane protein	NA	E7DYY8	Enterobacteria_phage	88.2	1.4e-147
>prophage 158
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2220114	2221251	4651105		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000699176.1|2220114_2221251_+	4-phosphoerythronate dehydrogenase PdxB	NA	A0A2R8FDS8	Brazilian_cedratvirus	29.1	3.8e-22
>prophage 159
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2227752	2229270	4651105		Mollivirus(100.0%)	1	NA	NA
WP_000334205.1|2227752_2229270_+	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	44.0	6.3e-89
>prophage 160
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2240701	2241475	4651105		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_001293591.1|2240701_2241475_+	histidine ABC transporter ATP-binding protein HisP	NA	M1I0T9	Acanthocystis_turfacea_Chlorella_virus	29.1	1.7e-10
>prophage 161
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2245203	2246223	4651105		Enterobacteria_phage(100.0%)	1	NA	NA
WP_000026949.1|2245203_2246223_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	27.7	3.2e-20
>prophage 162
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2257031	2260317	4651105		Acanthocystis_turfacea_Chlorella_virus(50.0%)	3	NA	NA
WP_001555201.1|2257031_2257709_+	sugar phosphatase	NA	M1IMD4	Acanthocystis_turfacea_Chlorella_virus	33.3	9.3e-08
WP_001528519.1|2257785_2259612_+	SLC13 family permease	NA	NA	NA	NA	NA
WP_000813882.1|2259717_2260317_-	5'-deoxynucleotidase	NA	A0A2L0V156	Salmonella_phage	38.6	7.0e-07
>prophage 163
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2279164	2280169	4651105		Bacillus_thuringiensis_phage(100.0%)	1	NA	NA
WP_000368564.1|2279164_2280169_-	chemotaxis protein CheV	NA	Q56AR1	Bacillus_thuringiensis_phage	25.6	3.2e-28
>prophage 164
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2292737	2297745	4651105		Tupanvirus(66.67%)	3	NA	NA
WP_000648764.1|2292737_2294720_-	bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	NA	A0A2K9KZK0	Tupanvirus	26.4	1.0e-22
WP_058673770.1|2295701_2296841_-	UDP-4-amino-4-deoxy-L-arabinose aminotransferase	NA	A0A2K9L0G1	Tupanvirus	29.3	7.0e-32
WP_000879257.1|2297139_2297745_+	lipopolysaccharide core heptose(II)-phosphate phosphatase	NA	A0A2L1IV13	Escherichia_phage	43.8	2.5e-12
>prophage 165
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2307727	2314927	4651105		Pseudomonas_phage(50.0%)	6	NA	NA
WP_058673772.1|2307727_2308798_+	glycerophosphodiester phosphodiesterase	NA	A0A220BYK6	Staphylococcus_phage	46.0	6.6e-08
WP_000176721.1|2308913_2309792_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000660248.1|2309952_2311143_+	MFS transporter	NA	NA	NA	NA	NA
WP_000533921.1|2311144_2311399_-	ferredoxin-like diferric-tyrosyl radical cofactor maintenance protein YfaE	NA	G9IAA2	Pseudomonas_phage	74.6	3.1e-25
WP_000332026.1|2311398_2312529_-	ribonucleotide-diphosphate reductase subunit beta	NA	G9IAA3	Pseudomonas_phage	79.4	8.7e-176
WP_001528471.1|2312641_2314927_-	ribonucleoside-diphosphate reductase subunit alpha	NA	I3UMG3	Colwellia_phage	63.8	1.8e-284
>prophage 166
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2319980	2325581	4651105		Bacillus_virus(50.0%)	2	NA	NA
WP_001281271.1|2319980_2322617_+	DNA topoisomerase (ATP-hydrolyzing) subunit A	NA	G3M9Z5	Bacillus_virus	30.7	4.3e-93
WP_000876070.1|2322734_2325581_+	two-component system sensor histidine kinase RcsC	NA	A0A1V0SGX0	Hokovirus	26.4	7.1e-41
>prophage 167
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2329748	2335566	4651105		Enterobacteria_phage(33.33%)	5	NA	NA
WP_000865520.1|2329748_2330885_+	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	58.8	6.6e-115
WP_000784297.1|2330999_2332052_+	FAD:protein FMN transferase ApbE	NA	NA	NA	NA	NA
WP_001528501.1|2332132_2333194_+	bifunctional DNA-binding transcriptional regulator/O6-methylguanine-DNA methyltransferase Ada	NA	A0A167R6J9	Powai_lake_megavirus	58.0	1.4e-18
WP_058673778.1|2333196_2333847_+	DNA oxidative demethylase AlkB	NA	NA	NA	NA	NA
WP_000421586.1|2333922_2335566_+	multidrug ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.2	4.4e-11
>prophage 168
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2342664	2343282	4651105		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_000888530.1|2342664_2343282_+	cytochrome c biogenesis heme-transporting ATPase CcmA	NA	A0A2R8FG22	Brazilian_cedratvirus	29.8	3.1e-10
>prophage 169
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2353792	2361483	4651105		Vibrio_phage(50.0%)	7	NA	NA
WP_000050806.1|2353792_2354800_+	nucleoid-associated protein YejK	NA	A0A1V0E8C0	Vibrio_phage	48.3	4.5e-83
WP_000494192.1|2354920_2355205_-	50S ribosomal protein L25	NA	NA	NA	NA	NA
WP_069721487.1|2355329_2357090_-	DEAD/DEAH box helicase	NA	M4Q3N1	Vibrio_phage	41.6	3.2e-100
WP_001234836.1|2357241_2357937_+	16S rRNA pseudouridine(516) synthase RsuA	NA	NA	NA	NA	NA
WP_000213349.1|2357964_2359155_+	Bcr/CflA family multidrug efflux MFS transporter	NA	S4TR35	Salmonella_phage	22.2	5.4e-19
WP_001094639.1|2359545_2359890_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000203619.1|2359893_2361483_-	microcin C ABC transporter ATP-binding protein YejF	NA	G9BWD6	Planktothrix_phage	32.1	3.2e-19
>prophage 170
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2367407	2367980	4651105		Clostridioides_phage(100.0%)	1	NA	NA
WP_000241015.1|2367407_2367980_-	bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	NA	A0A1V0DZX6	Clostridioides_phage	38.9	8.1e-13
>prophage 171
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2383090	2385082	4651105		Acinetobacter_phage(100.0%)	1	NA	NA
WP_000488258.1|2383090_2385082_+	catecholate siderophore receptor CirA	NA	A0A0P0I887	Acinetobacter_phage	37.9	6.7e-14
>prophage 172
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2395148	2396669	4651105		Organic_Lake_phycodnavirus(100.0%)	1	NA	NA
WP_058673792.1|2395148_2396669_+	galactose/methyl galactoside ABC transporter ATP-binding protein MglA	NA	F2Y2R6	Organic_Lake_phycodnavirus	31.9	7.7e-10
>prophage 173
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2424532	2431895	4651105	tRNA	Enterobacteria_phage(80.0%)	7	NA	NA
WP_001240418.1|2424532_2425264_-	HTH-type transcriptional regulator MlrA	NA	Q9EYF2	Enterobacteria_phage	87.9	4.5e-101
WP_000272850.1|2425488_2427174_+	sensor histidine kinase	NA	Q9EYF3	Enterobacteria_phage	91.3	4.8e-279
WP_000598637.1|2427170_2427890_+	two-component system response regulator BtsR	NA	NA	NA	NA	NA
WP_000950413.1|2427936_2428404_+	DUF1456 family protein	NA	Q9EYF4	Enterobacteria_phage	90.3	3.9e-74
WP_001528371.1|2428460_2428991_-	YehR family lipoprotein	NA	NA	NA	NA	NA
WP_000703136.1|2429162_2429621_-	YehR family lipoprotein	NA	Q9EYF5	Enterobacteria_phage	73.2	7.6e-54
WP_001528465.1|2429861_2431895_-|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SDF2	Indivirus	27.6	6.1e-55
>prophage 174
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2449506	2450868	4651105	tRNA	Phage_TP(100.0%)	1	NA	NA
WP_001517981.1|2449506_2450868_-|tRNA	tRNA 5-hydroxyuridine modification protein YegQ	tRNA	Q6DW11	Phage_TP	95.4	2.3e-207
>prophage 175
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2463555	2470167	4651105		Bacillus_phage(66.67%)	4	NA	NA
WP_000137854.1|2463555_2464278_-	two-component system response regulator BaeR	NA	W8CYM9	Bacillus_phage	33.6	6.4e-31
WP_000870073.1|2464274_2465678_-	two-component system sensor histidine kinase BaeS	NA	W8CYF6	Bacillus_phage	28.7	3.6e-30
WP_000137818.1|2465677_2467090_-	MFS transporter	NA	NA	NA	NA	NA
WP_001528475.1|2467086_2470167_-	multidrug efflux RND transporter permease subunit MdtC	NA	S5VTK5	Leptospira_phage	23.4	3.8e-64
>prophage 176
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2480612	2489911	4651105		Catovirus(25.0%)	6	NA	NA
WP_000132082.1|2480612_2481254_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	36.9	2.5e-34
WP_001234783.1|2481344_2481926_+	dCTP deaminase	NA	I4AZP2	Saccharomonospora_phage	43.2	9.3e-33
WP_000454712.1|2483905_2485486_-	TerC family protein	NA	A0A0R6PEZ3	Moraxella_phage	45.4	1.1e-38
WP_000978077.1|2486160_2487300_+	polysaccharide export protein	NA	NA	NA	NA	NA
WP_000482224.1|2487305_2487755_+	low molecular weight protein-tyrosine-phosphatase Wzb	NA	NA	NA	NA	NA
WP_001528363.1|2487751_2489911_+	tyrosine-protein kinase Wzc	NA	A0A1X9I5D6	Streptococcus_phage	30.8	5.4e-17
>prophage 177
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2495086	2501792	4651105		Synechococcus_phage(25.0%)	6	NA	NA
WP_080218166.1|2495086_2496208_+	GDP-mannose 4,6-dehydratase	NA	M4QRT5	Synechococcus_phage	65.2	1.5e-132
WP_058673829.1|2496210_2497176_+	GDP-L-fucose synthase	NA	D1LW79	Prochlorococcus_phage	50.2	1.3e-84
WP_001528436.1|2497178_2497652_+	GDP-mannose mannosyl hydrolase	NA	NA	NA	NA	NA
WP_000699653.1|2497648_2498872_+	colanic acid biosynthesis fucosyltransferase WcaI	NA	NA	NA	NA	NA
WP_000605942.1|2498868_2500311_+	mannose-1-phosphate guanyltransferase	NA	A0A1V0SH58	Hokovirus	29.7	5.5e-50
WP_001528359.1|2500421_2501792_+	phosphomannomutase CpsG	NA	A0A127AWJ1	Bacillus_phage	27.4	7.6e-33
>prophage 178
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2507379	2519772	4651105		Enterobacteria_phage(25.0%)	11	NA	NA
WP_001528434.1|2507379_2508783_+	colanic acid biosynthesis protein WcaM	NA	A0A291LBB9	Klebsiella_phage	26.5	2.3e-21
WP_000981469.1|2508960_2509854_+	GalU regulator GalF	NA	A0A127AW70	Bacillus_phage	42.2	4.8e-44
WP_000697846.1|2510230_2511316_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	53.9	1.6e-102
WP_015405858.1|2511315_2512215_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	36.0	6.7e-30
WP_000973709.1|2513140_2513692_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	58.0	1.3e-52
WP_001528498.1|2513697_2514672_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA	NA
WP_000648785.1|2514687_2515461_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA	NA
WP_001528452.1|2515465_2516545_+	CDP-glucose 4,6-dehydratase	NA	A0A222YY99	Synechococcus_phage	24.5	2.3e-16
WP_000126349.1|2516571_2517885_+	lipopolysaccharide biosynthesis protein RfbH	NA	H8ZJ36	Ostreococcus_tauri_virus	35.1	7.0e-52
WP_001528480.1|2517919_2518759_+	CDP-paratose synthase	NA	NA	NA	NA	NA
WP_000770933.1|2518755_2519772_+	CDP-paratose 2-epimerase	NA	E3T4Y8	Cafeteria_roenbergensis_virus	27.1	2.1e-24
>prophage 179
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2524725	2526165	4651105		Hokovirus(100.0%)	1	NA	NA
WP_001528486.1|2524725_2526165_+	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA	A0A1V0SH58	Hokovirus	30.7	1.7e-54
>prophage 180
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2529249	2532059	4651105		Ostreococcus_lucimarinus_virus(50.0%)	2	NA	NA
WP_023225597.1|2529249_2530656_+	NADP-dependent phosphogluconate dehydrogenase	NA	M4QQM4	Ostreococcus_lucimarinus_virus	28.3	1.2e-36
WP_000704820.1|2530892_2532059_+	UDP-glucose 6-dehydrogenase	NA	M1I798	Paramecium_bursaria_Chlorella_virus	53.0	2.0e-111
>prophage 181
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2539516	2540416	4651105		Cellulophaga_phage(100.0%)	1	NA	NA
WP_000886599.1|2539516_2540416_-	ATP phosphoribosyltransferase	NA	A0A0F7Q4B0	Cellulophaga_phage	100.0	1.7e-12
>prophage 182
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2551369	2554005	4651105		Escherichia_phage(50.0%)	3	NA	NA
WP_001016239.1|2551369_2551948_+	thiosulfate reductase electron transport protein PhsB	NA	A0A077SL61	Escherichia_phage	38.2	5.1e-23
WP_001092553.1|2551944_2552709_+	thiosulfate reductase cytochrome B subunit	NA	NA	NA	NA	NA
WP_000925050.1|2552832_2554005_+	serine-type D-Ala-D-Ala carboxypeptidase DacD	NA	B6DZZ7	Stx2-converting_phage	87.4	5.2e-200
>prophage 183
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2573712	2574507	4651105		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_142128560.1|2573712_2574507_+	propanediol diffusion facilitator PduF	NA	A0A1J0F964	Only_Syngen_Nebraska_virus	27.2	1.6e-11
>prophage 184
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2588017	2588833	4651105		Amsacta_moorei_entomopoxvirus(100.0%)	1	NA	NA
WP_000881544.1|2588017_2588833_+	energy-coupling factor ABC transporter ATP-binding protein	NA	Q9EMR9	Amsacta_moorei_entomopoxvirus	24.7	5.9e-09
>prophage 185
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2603739	2604216	4651105		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_001101540.1|2603739_2604216_+	arsenate reductase ArsC	NA	A0A2H4J8A6	uncultured_Caudovirales_phage	52.5	2.3e-37
>prophage 186
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2607501	2607804	4651105		Dichelobacter_phage(100.0%)	1	NA	NA
WP_058673839.1|2607501_2607804_-	DUF4102 domain-containing protein	NA	A7X7X0	Dichelobacter_phage	51.9	7.5e-10
>prophage 187
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2616060	2627459	4651105		Burkholderia_phage(28.57%)	12	NA	NA
WP_001529335.1|2616060_2617329_+	Y-family DNA polymerase	NA	I6RSM4	Salmonella_phage	92.2	1.4e-227
WP_000208509.1|2617783_2617996_+	cold-shock protein	NA	A0A1W6JNX5	Morganella_phage	70.0	3.9e-21
WP_024131163.1|2618006_2618195_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015405879.1|2618454_2619633_-	porin OmpS1	NA	Q1MVN1	Enterobacteria_phage	57.0	1.1e-109
WP_000107437.1|2620282_2620594_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001529334.1|2620673_2621369_+	phosphohydrolase	NA	A0A1D6Y7U0	Golden_Marseillevirus	28.2	2.1e-07
WP_001157312.1|2621442_2622873_+	DNA cytosine methyltransferase	NA	E5E3X6	Burkholderia_phage	57.5	3.5e-105
WP_000785978.1|2622853_2623324_+	very short patch repair endonuclease	NA	E5E3X5	Burkholderia_phage	46.9	1.2e-30
WP_001212264.1|2623312_2624233_-	drug/metabolite exporter YedA	NA	NA	NA	NA	NA
WP_001529330.1|2624408_2625320_+	DUF808 domain-containing protein	NA	NA	NA	NA	NA
WP_001178602.1|2625336_2625582_+	YodC family protein	NA	NA	NA	NA	NA
WP_001119833.1|2625746_2627459_+	cellulose biosynthesis regulator YedQ	NA	A0A127AWB9	Bacillus_phage	37.4	1.6e-19
>prophage 188
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2655138	2655891	4651105		Bacillus_virus(100.0%)	1	NA	NA
WP_001273033.1|2655138_2655891_+	L-cystine ABC transporter ATP-binding protein YecC	NA	G3M9Y6	Bacillus_virus	34.5	3.2e-25
>prophage 189
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2664154	2664820	4651105		Sphingomonas_phage(100.0%)	1	NA	NA
WP_080218113.1|2664154_2664820_+	YecA family protein	NA	H9NBT7	Sphingomonas_phage	62.1	1.5e-05
>prophage 190
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2680092	2684234	4651105		Bacillus_thuringiensis_phage(66.67%)	4	NA	NA
WP_000483279.1|2680092_2681754_+	methyl-accepting chemotaxis protein II	NA	A0A2H4J162	uncultured_Caudovirales_phage	25.0	5.8e-11
WP_000204370.1|2681914_2682781_+	protein-glutamate O-methyltransferase CheR	NA	NA	NA	NA	NA
WP_000036389.1|2682777_2683827_+	protein-glutamate methylesterase/protein glutamine deamidase	NA	Q56AR1	Bacillus_thuringiensis_phage	32.8	1.0e-05
WP_000763861.1|2683844_2684234_+	chemotaxis protein CheY	NA	Q56AR1	Bacillus_thuringiensis_phage	30.4	2.2e-06
>prophage 191
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2692186	2698744	4651105	tRNA	Tupanvirus(33.33%)	6	NA	NA
WP_001529203.1|2692186_2693920_-|tRNA	arginine--tRNA ligase	tRNA	A0A2K9L2F0	Tupanvirus	33.4	1.8e-84
WP_001185781.1|2694743_2695490_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_000569026.1|2695725_2696697_-|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	tRNA	NA	NA	NA	NA
WP_000019607.1|2696693_2697437_-	carboxy-S-adenosyl-L-methionine synthase CmoA	NA	F5B419	Synechococcus_phage	30.9	4.1e-25
WP_001529230.1|2697477_2697873_-	membrane protein	NA	NA	NA	NA	NA
WP_058673841.1|2697925_2698744_-	DUF72 domain-containing protein	NA	Q859D1	Escherichia_coli_phage	79.5	1.7e-56
>prophage 192
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2702763	2710900	4651105		Bacillus_virus(50.0%)	9	NA	NA
WP_000022509.1|2702763_2703285_+	crossover junction endodeoxyribonuclease RuvC	NA	G3MA90	Bacillus_virus	35.1	2.6e-10
WP_000716739.1|2703286_2703886_-	YebB family permuted papain-like enzyme	NA	NA	NA	NA	NA
WP_072202801.1|2704305_2704782_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000580333.1|2705295_2705907_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_080218115.1|2705915_2706926_+	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	26.2	6.9e-07
WP_000571507.1|2707004_2707790_-	zinc ABC transporter permease subunit ZnuB	NA	NA	NA	NA	NA
WP_000203013.1|2707786_2708542_-	zinc ABC transporter ATP-binding protein ZnuC	NA	G3M9Y6	Bacillus_virus	29.4	8.5e-18
WP_000939597.1|2708620_2709565_+	zinc ABC transporter substrate-binding protein ZnuA	NA	NA	NA	NA	NA
WP_001184028.1|2709580_2710900_+	murein DD-endopeptidase MepM	NA	A8ATH6	Listeria_phage	40.9	2.6e-14
>prophage 193
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2714837	2716313	4651105		Cyanophage(100.0%)	1	NA	NA
WP_000301711.1|2714837_2716313_+	glucose-6-phosphate dehydrogenase	NA	H6WFS4	Cyanophage	37.5	2.6e-79
>prophage 194
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2724211	2735063	4651105	tail,integrase	Salmonella_phage(40.0%)	15	2712134:2712148	2730457:2730471
2712134:2712148	attL	ACCAGGTCGCCGGAA	NA	NA	NA	NA
WP_000944280.1|2724211_2724910_-	exodeoxyribonuclease X	NA	Q6UAU3	Klebsiella_phage	40.4	2.8e-07
WP_000100257.1|2724933_2725590_-	carbon-nitrogen hydrolase family protein	NA	NA	NA	NA	NA
WP_000856225.1|2725696_2725927_-	DNA polymerase III subunit theta	NA	H9C187	Pectobacterium_phage	60.3	2.9e-14
WP_000168393.1|2726064_2726439_+	CopC domain-containing protein YobA	NA	NA	NA	NA	NA
WP_001529229.1|2726439_2727315_+	copper homeostasis membrane protein CopD	NA	NA	NA	NA	NA
WP_000722368.1|2727331_2727685_+	YebY family protein	NA	NA	NA	NA	NA
WP_001529245.1|2728058_2729138_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	53.2	5.1e-101
WP_001529201.1|2729134_2730241_-	exodeoxyribonuclease 8	NA	Q9QF34	Lambdoid_phage	66.1	2.6e-55
WP_001529234.1|2730271_2730559_+	glycoside hydrolase family 19 protein	NA	Q8HA86	Salmonella_phage	95.1	1.9e-39
2730457:2730471	attR	TTCCGGCGACCTGGT	NA	NA	NA	NA
WP_001529209.1|2730555_2731089_+	DUF2514 domain-containing protein	NA	A0A291LBG9	Klebsiella_phage	42.4	1.6e-10
WP_000789530.1|2731345_2731513_-	lytic enzyme	NA	NA	NA	NA	NA
WP_000348550.1|2731815_2732307_+	DUF1441 family protein	NA	Q9EYD0	Enterobacteria_phage	56.2	7.6e-44
WP_001529243.1|2732859_2734197_+|tail	phage tail protein	tail	E5G6P0	Salmonella_phage	52.1	9.9e-78
WP_001529204.1|2734168_2734489_+	hypothetical protein	NA	A0A0M4QWS3	Salmonella_phage	79.2	2.9e-44
WP_015405891.1|2734478_2735063_+|tail	tail fiber assembly protein	tail	A0A0M4RTP2	Salmonella_phage	80.1	2.2e-82
>prophage 195
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2743780	2746905	4651105		Enterobacteria_phage(50.0%)	4	NA	NA
WP_000422881.1|2743780_2744176_-	DUF1398 domain-containing protein	NA	C6ZCX4	Enterobacteria_phage	32.8	1.2e-15
WP_001529242.1|2744859_2745582_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA	NA
WP_001134856.1|2745866_2746031_+	membrane protein	NA	NA	NA	NA	NA
WP_001529250.1|2746254_2746905_+	protein-serine/threonine phosphatase	NA	A0A222YWF0	Escherichia_phage	51.4	8.5e-59
>prophage 196
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2754410	2756459	4651105		Moraxella_phage(100.0%)	1	NA	NA
WP_001529239.1|2754410_2756459_+	carboxy terminal-processing peptidase	NA	A0A0R6PIZ1	Moraxella_phage	33.5	4.7e-87
>prophage 197
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2761835	2762045	4651105		Morganella_phage(100.0%)	1	NA	NA
WP_001062678.1|2761835_2762045_+	transcription antiterminator/RNA stability regulator CspE	NA	A0A1W6JNX5	Morganella_phage	78.1	1.6e-22
>prophage 198
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2769532	2771092	4651105		Moraxella_phage(100.0%)	1	NA	NA
WP_000421820.1|2769532_2771092_+	CNNM family cation transport protein YoaE	NA	A0A0R6PEZ3	Moraxella_phage	44.4	9.5e-40
>prophage 199
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2775062	2782374	4651105	tRNA	Pandoravirus(33.33%)	7	NA	NA
WP_001529323.1|2775062_2776427_-	aminodeoxychorismate synthase component 1	NA	A0A0B5J984	Pandoravirus	35.0	3.3e-44
WP_000457328.1|2776507_2776687_+	YoaH family protein	NA	NA	NA	NA	NA
WP_000029550.1|2776692_2777037_-	RidA family protein	NA	NA	NA	NA	NA
WP_058673845.1|2777167_2779078_+	ATP-dependent DNA helicase	NA	A0A127AW80	Bacillus_phage	32.8	7.0e-93
WP_001221017.1|2779135_2779831_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	tRNA	NA	NA	NA	NA
WP_000290594.1|2779902_2780484_+	Slp family lipoprotein	NA	NA	NA	NA	NA
WP_001529322.1|2780688_2782374_+	long-chain-fatty-acid--CoA ligase FadD	NA	A0A2H4PQM9	Staphylococcus_phage	26.2	2.9e-34
>prophage 200
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2817074	2819832	4651105		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_001037186.1|2817074_2818760_-	C4-dicarboxylic acid transporter DauA	NA	A0A2H4J153	uncultured_Caudovirales_phage	23.3	3.9e-23
WP_001518537.1|2818884_2819832_-	ribose-phosphate pyrophosphokinase	NA	A0A2K9L2G2	Tupanvirus	37.8	8.6e-44
>prophage 201
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2823179	2828837	4651105		Pseudomonas_phage(33.33%)	7	NA	NA
WP_001527749.1|2823179_2824262_+	peptide chain release factor 1	NA	W8EDB3	Pseudomonas_phage	41.6	8.7e-08
WP_001527743.1|2824261_2825095_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_015405903.1|2825091_2825481_+	SirB family protein	NA	NA	NA	NA	NA
WP_001257065.1|2825484_2826294_+	tetratricopeptide repeat-containing protein	NA	NA	NA	NA	NA
WP_000811046.1|2826331_2827186_+	3-deoxy-8-phosphooctulonate synthase	NA	E3T537	Cafeteria_roenbergensis_virus	38.8	1.9e-45
WP_000148418.1|2827239_2828340_-	sodium-potassium/proton antiporter ChaA	NA	NA	NA	NA	NA
WP_001146392.1|2828606_2828837_+	putative cation transport regulator ChaB	NA	A0A1S5YE01	Mythimna_unipuncta_granulovirus	41.3	1.1e-05
>prophage 202
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2839156	2849764	4651105		Escherichia_phage(25.0%)	10	NA	NA
WP_000702629.1|2839156_2840692_+	nitrate reductase subunit beta	NA	A0A077SL61	Escherichia_phage	41.4	4.8e-20
WP_001527628.1|2840688_2841399_+	nitrate reductase molybdenum cofactor assembly chaperone	NA	NA	NA	NA	NA
WP_000545594.1|2841398_2842076_+	respiratory nitrate reductase subunit gamma	NA	NA	NA	NA	NA
WP_001191156.1|2843356_2844199_-	formyltetrahydrofolate deformylase	NA	M4QRX9	Synechococcus_phage	48.8	7.5e-15
WP_001540172.1|2844249_2844708_-	YchJ family protein	NA	NA	NA	NA	NA
WP_080218170.1|2844818_2845724_+	patatin-like phospholipase RssA	NA	NA	NA	NA	NA
WP_000193432.1|2845814_2846828_+	two-component system response regulator RssB	NA	NA	NA	NA	NA
WP_000729450.1|2847030_2847939_+	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	47.5	8.2e-60
WP_001287383.1|2848070_2848484_-	DNA-binding transcriptional regulator H-NS	NA	NA	NA	NA	NA
WP_000068097.1|2849146_2849764_+	thymidine kinase	NA	A0A023W530	Serratia_phage	54.2	2.7e-54
>prophage 203
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2858136	2861029	4651105		Planktothrix_phage(33.33%)	3	NA	NA
WP_000058861.1|2858136_2859144_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	28.9	1.7e-13
WP_000994697.1|2859140_2860145_+	murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF	NA	G3M9Y6	Bacillus_virus	29.1	8.1e-16
WP_000059073.1|2860192_2861029_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	42.4	1.0e-08
>prophage 204
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2872690	2875648	4651105		Acinetobacter_phage(100.0%)	2	NA	NA
WP_001195293.1|2872690_2874049_-	bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF	NA	A0A0P0IR83	Acinetobacter_phage	40.7	3.0e-37
WP_000763497.1|2874052_2875648_-	bifunctional anthranilate synthase glutamate amidotransferase component TrpG/anthranilate phosphoribosyltransferase TrpD	NA	A0A0N7IRD9	Acinetobacter_phage	39.1	2.0e-53
>prophage 205
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2880629	2882675	4651105	protease	Chrysochromulina_ericina_virus(50.0%)	2	NA	NA
WP_000559313.1|2880629_2881391_-	YciK family oxidoreductase	NA	A0A0N9R355	Chrysochromulina_ericina_virus	22.2	7.5e-06
WP_000422082.1|2881628_2882675_+|protease	protease SohB	protease	A0A2H4UUF9	Bodo_saltans_virus	29.5	1.6e-19
>prophage 206
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2891053	2891644	4651105		Staphylococcus_phage(100.0%)	1	NA	NA
WP_001176284.1|2891053_2891644_-	GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	48.4	2.9e-42
>prophage 207
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2899471	2901406	4651105		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_000485041.1|2899471_2901406_-	exoribonuclease II	NA	A0A2H4UVB7	Bodo_saltans_virus	23.5	1.5e-05
>prophage 208
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2906782	2913524	4651105		Salmonella_phage(33.33%)	9	NA	NA
WP_000230462.1|2906782_2907589_-	peptide ABC transporter ATP-binding protein SapF	NA	G3M9Y6	Bacillus_virus	27.4	4.6e-14
WP_001128869.1|2907590_2908583_-	peptide ABC transporter ATP-binding protein SapD	NA	NA	NA	NA	NA
WP_001146150.1|2908582_2909473_-	peptide ABC transporter permease SapC	NA	NA	NA	NA	NA
WP_024138900.1|2909596_2909998_+	DUF4102 domain-containing protein	NA	K7PGY1	Enterobacteria_phage	58.4	1.1e-32
WP_058673848.1|2910377_2911100_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001096568.1|2911570_2911753_+	hypothetical protein	NA	S4TSR3	Salmonella_phage	77.6	1.0e-22
WP_001605117.1|2912001_2912142_+	hypothetical protein	NA	A0A0U2KD26	Escherichia_phage	77.1	6.5e-09
WP_001611630.1|2912180_2912480_+	pertussis toxin subunit	NA	A0A0U2KD26	Escherichia_phage	52.9	9.4e-13
WP_077905325.1|2913209_2913524_+	recombinase family protein	NA	A0A1S6L009	Salmonella_phage	86.1	4.3e-40
>prophage 209
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2930368	2931238	4651105		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000456775.1|2930368_2931238_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.2	3.9e-51
>prophage 210
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2934786	2935644	4651105		Streptococcus_phage(100.0%)	1	NA	NA
WP_077905324.1|2934786_2935644_-	helix-turn-helix domain-containing protein	NA	A0A1B0RXG1	Streptococcus_phage	27.1	3.4e-07
>prophage 211
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2945853	2953901	4651105	tRNA	Streptococcus_phage(20.0%)	10	NA	NA
WP_000945034.1|2945853_2946369_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	54.5	2.3e-22
WP_001046799.1|2946626_2947190_+	DNA endonuclease SmrA	NA	NA	NA	NA	NA
WP_023226169.1|2947600_2948755_+	chemoreceptor protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	27.8	1.5e-10
WP_000387374.1|2948900_2949884_+	zinc transporter ZntB	NA	NA	NA	NA	NA
WP_015405931.1|2950159_2950342_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527783.1|2950370_2951744_+	ATP-dependent RNA helicase DbpA	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	32.0	1.6e-51
WP_001156210.1|2951787_2952723_-|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	tRNA	A0A0U2S5Z2	Escherichia_phage	97.3	9.4e-144
WP_000089155.1|2952933_2953086_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000159240.1|2953078_2953417_+	EamA family transporter	NA	NA	NA	NA	NA
WP_001082296.1|2953466_2953901_-	universal stress protein UspF	NA	A0A1W6JNV4	Morganella_phage	52.1	9.4e-30
>prophage 212
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2959013	2960003	4651105		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_000762206.1|2959013_2960003_-	D-lactate dehydrogenase	NA	M1I4S0	Paramecium_bursaria_Chlorella_virus	42.5	1.2e-69
>prophage 213
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2964823	2970237	4651105		Catovirus(50.0%)	3	NA	NA
WP_023139936.1|2964823_2968726_+	ATP-dependent RNA helicase HrpA	NA	A0A1V0SBU4	Catovirus	30.2	4.2e-52
WP_058673852.1|2968789_2969590_+	YdcF family protein	NA	NA	NA	NA	NA
WP_058673853.1|2969706_2970237_+	cytochrome b561	NA	A0A0U2QLA7	Escherichia_phage	43.9	2.7e-18
>prophage 214
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2973996	2974728	4651105		Planktothrix_phage(100.0%)	1	NA	NA
WP_001527803.1|2973996_2974728_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.1	1.2e-24
>prophage 215
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	2981301	2988392	4651105		Synechococcus_phage(33.33%)	5	NA	NA
WP_001527796.1|2981301_2982420_+	S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase	NA	E3SJ82	Synechococcus_phage	29.1	5.8e-31
WP_080218175.1|2982589_2984215_+	HAMP domain-containing protein	NA	A0A2H4J162	uncultured_Caudovirales_phage	33.1	6.5e-07
WP_000414259.1|2984275_2985199_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_058673855.1|2985491_2986835_+	VOC family protein	NA	NA	NA	NA	NA
WP_080218176.1|2986883_2988392_+	carboxylesterase/lipase family protein	NA	G5CSV8	Megavirus	37.9	9.2e-32
>prophage 216
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3004493	3006458	4651105		Phage_TP(100.0%)	1	NA	NA
WP_001527629.1|3004493_3006458_+	U32 family peptidase	NA	Q6DW11	Phage_TP	26.7	8.6e-22
>prophage 217
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3024022	3026143	4651105		Salmonella_phage(100.0%)	1	NA	NA
WP_015405942.1|3024022_3026143_-	TonB-dependent receptor	NA	A0A1B0VCF0	Salmonella_phage	65.9	7.4e-136
>prophage 218
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3043785	3044874	4651105		Enterobacteria_phage(100.0%)	1	NA	NA
WP_000769035.1|3043785_3044874_-	porin OmpD	NA	Q1MVN1	Enterobacteria_phage	75.1	4.0e-154
>prophage 219
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3051242	3052253	4651105		Tupanvirus(100.0%)	1	NA	NA
WP_000642447.1|3051242_3052253_-	alcohol dehydrogenase AdhP	NA	A0A2K9L339	Tupanvirus	25.9	8.6e-26
>prophage 220
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3077392	3077677	4651105		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000221344.1|3077392_3077677_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	A0A2H4JBF4	uncultured_Caudovirales_phage	55.9	5.2e-21
>prophage 221
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3096706	3097825	4651105		Enterobacteria_phage(100.0%)	1	NA	NA
WP_000758335.1|3096706_3097825_-	porin OmpC	NA	Q1MVN1	Enterobacteria_phage	58.5	1.6e-113
>prophage 222
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3106760	3107144	4651105		Streptococcus_phage(100.0%)	1	NA	NA
WP_000091194.1|3106760_3107144_+	MDR efflux pump AcrAB transcriptional activator MarA	NA	D0R0F8	Streptococcus_phage	32.3	4.7e-09
>prophage 223
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3116428	3116632	4651105		Salmonella_phage(100.0%)	1	NA	NA
WP_000989267.1|3116428_3116632_+	putative selenium delivery protein YdfZ	NA	J9Q802	Salmonella_phage	55.2	2.9e-13
>prophage 224
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3120770	3122433	4651105		Oenococcus_phage(50.0%)	2	NA	NA
WP_058673872.1|3120770_3121985_-	starvation-sensing protein RspA	NA	Q6A202	Oenococcus_phage	28.7	1.5e-45
WP_000921389.1|3122106_3122433_-	YnfA family protein	NA	A0A218MNG8	uncultured_virus	52.9	2.2e-23
>prophage 225
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3127377	3135708	4651105		Escherichia_phage(75.0%)	8	NA	NA
WP_058673874.1|3127377_3129813_+	dimethyl sulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	47.9	9.5e-204
WP_058673875.1|3129823_3130441_+	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	4.3e-76
WP_000534706.1|3130442_3131300_+	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_000206567.1|3131342_3131957_+	Tat proofreading chaperone DmsD	NA	A0A077SLS7	Escherichia_phage	37.3	7.3e-28
WP_058673876.1|3132261_3132972_+	osmoprotectant ABC transporter permease OsmY	NA	NA	NA	NA	NA
WP_001211193.1|3133000_3133903_+	osmoprotectant ABC transporter substrate-binding protein OsmX	NA	NA	NA	NA	NA
WP_000379674.1|3133912_3134560_+	osmoprotectant ABC transporter permease OsmW	NA	NA	NA	NA	NA
WP_000593089.1|3134559_3135708_+	osmoprotectant ABC transporter ATP-binding protein OsmV	NA	G9BWD6	Planktothrix_phage	33.9	2.2e-25
>prophage 226
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3153420	3157843	4651105		Enterobacteria_phage(50.0%)	3	NA	NA
WP_001527805.1|3153420_3154572_+	porin OmpS2	NA	Q1MVN1	Enterobacteria_phage	59.3	5.4e-117
WP_072202808.1|3154724_3156431_+	amidohydrolase	NA	NA	NA	NA	NA
WP_001527854.1|3156541_3157843_+	two-component system sensor histidine kinase RstB	NA	W8CYF6	Bacillus_phage	22.7	2.0e-14
>prophage 227
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3182923	3184198	4651105	tRNA	Cronobacter_phage(100.0%)	1	NA	NA
WP_000168626.1|3182923_3184198_-|tRNA	tyrosine--tRNA ligase	tRNA	K4F5T3	Cronobacter_phage	42.1	1.6e-85
>prophage 228
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3191114	3191636	4651105		Salmonella_phage(100.0%)	1	NA	NA
WP_000826820.1|3191114_3191636_-	superoxide dismutase [Cu-Zn] SodC2	NA	Q9MC02	Salmonella_phage	60.3	4.0e-51
>prophage 229
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3196710	3204134	4651105		Streptococcus_phage(20.0%)	8	NA	NA
WP_023225763.1|3196710_3197565_+	C40 family peptidase	NA	A0A1S5SEZ8	Streptococcus_phage	41.0	1.2e-15
WP_000007294.1|3197691_3198273_+	superoxide dismutase [Fe]	NA	Q56AR7	Bacillus_thuringiensis_phage	46.0	2.6e-43
WP_000102277.1|3198355_3198445_-	YnhF family membrane protein	NA	NA	NA	NA	NA
WP_000190993.1|3198740_3199766_+	HTH-type transcriptional repressor PurR	NA	C6ZCU4	Enterobacteria_phage	31.6	3.1e-31
WP_000269512.1|3199762_3200695_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_001182318.1|3200807_3202013_+	Bcr/CflA family multidrug efflux MFS transporter	NA	NA	NA	NA	NA
WP_000098879.1|3202302_3203451_+	cyclopropane fatty acyl phospholipid synthase	NA	A0A2K9L4K8	Tupanvirus	45.9	2.5e-85
WP_000493971.1|3203492_3204134_-	riboflavin synthase	NA	A0A2I2L4R9	Orpheovirus	38.3	8.8e-24
>prophage 230
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3228030	3232369	4651105		Ectocarpus_siliculosus_virus(50.0%)	3	NA	NA
WP_001050758.1|3228030_3230793_+	two component system sensor kinase	NA	Q8QKV7	Ectocarpus_siliculosus_virus	27.3	6.0e-29
WP_000666335.1|3230823_3231462_+	two component system response regulator	NA	NA	NA	NA	NA
WP_001527807.1|3231640_3232369_+	MerR family transcriptional regulator	NA	Q9EYF2	Enterobacteria_phage	46.9	4.1e-46
>prophage 231
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3250544	3253754	4651105		environmental_halophage(50.0%)	3	NA	NA
WP_000143863.1|3250544_3251765_-	cysteine desulfurase SufS	NA	Q2XUY6	environmental_halophage	40.8	1.3e-92
WP_001527739.1|3251761_3253033_-	Fe-S cluster assembly protein SufD	NA	NA	NA	NA	NA
WP_000948904.1|3253007_3253754_-	Fe-S cluster assembly ATPase SufC	NA	A0A1V0SE00	Indivirus	24.2	2.5e-06
>prophage 232
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3276115	3295744	4651105	tRNA	Tupanvirus(22.22%)	18	NA	NA
WP_000117494.1|3276115_3277756_+	medium-chain fatty-acid--CoA ligase	NA	A0A1V0SBX8	Catovirus	24.6	1.4e-20
WP_000069340.1|3277797_3280176_-	phosphoenolpyruvate synthase	NA	A0A1V0SGR7	Hokovirus	36.7	2.5e-172
WP_000370992.1|3280512_3281346_+	posphoenolpyruvate synthetase regulatory kinase/phosphorylase PpsR	NA	NA	NA	NA	NA
WP_001082196.1|3281501_3282548_+	3-deoxy-7-phosphoheptulonate synthase AroH	NA	S4W5F1	Pandoravirus	47.6	9.7e-81
WP_000089115.1|3282704_3282896_+	hemin uptake protein HemP	NA	NA	NA	NA	NA
WP_015405975.1|3282931_3284374_-	YdiU family protein	NA	NA	NA	NA	NA
WP_001527640.1|3284435_3285149_-	anti-FlhDC factor YdiV	NA	NA	NA	NA	NA
WP_001213256.1|3285462_3285927_-	lipoprotein	NA	A0A1V0DZX6	Clostridioides_phage	39.4	2.0e-14
WP_000080607.1|3286003_3286753_-	vitamin B12 ABC transporter ATP-binding protein BtuD	NA	A0A2R8FG22	Brazilian_cedratvirus	28.2	4.6e-08
WP_001181565.1|3286752_3287304_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_001527850.1|3287395_3288376_-	vitamin B12 ABC transporter permease BtuC	NA	NA	NA	NA	NA
WP_001229266.1|3288578_3288878_-	integration host factor subunit alpha	NA	A0A0H3UZA0	Geobacillus_virus	40.0	7.2e-13
WP_000018570.1|3291284_3292268_-|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2K9L3A8	Tupanvirus	38.5	1.1e-33
WP_001386830.1|3292404_3292449_-	pheST operon leader peptide PheM	NA	NA	NA	NA	NA
WP_000124850.1|3292569_3292926_-	50S ribosomal protein L20	NA	NA	NA	NA	NA
WP_001124225.1|3292976_3293174_-	50S ribosomal protein L35	NA	NA	NA	NA	NA
WP_001574431.1|3293269_3293812_-	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	32.7	4.8e-15
WP_058673890.1|3293815_3295744_-|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L297	Tupanvirus	37.4	1.4e-128
>prophage 233
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3308423	3310676	4651105		Tupanvirus(100.0%)	1	NA	NA
WP_000019114.1|3308423_3310676_+	catalase HPII	NA	A0A2K9L0T1	Tupanvirus	49.8	1.7e-143
>prophage 234
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3316843	3317671	4651105		Bacillus_virus(100.0%)	1	NA	NA
WP_000174980.1|3316843_3317671_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	54.6	5.0e-72
>prophage 235
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3324369	3325596	4651105		Klosneuvirus(100.0%)	1	NA	NA
WP_001527632.1|3324369_3325596_-	aspartate aminotransferase family protein	NA	A0A1V0SKB7	Klosneuvirus	27.8	6.2e-26
>prophage 236
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3329183	3331133	4651105		Streptococcus_phage(100.0%)	1	NA	NA
WP_001235862.1|3329183_3331133_-	DNA topoisomerase III	NA	A0A1X9I6W8	Streptococcus_phage	28.7	3.1e-40
>prophage 237
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3336018	3336675	4651105		Tupanvirus(100.0%)	1	NA	NA
WP_000184705.1|3336018_3336675_+	bifunctional nicotinamidase/pyrazinamidase	NA	A0A2K9L2K0	Tupanvirus	35.2	9.6e-18
>prophage 238
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3346076	3349502	4651105		Bacillus_phage(100.0%)	3	NA	NA
WP_000219713.1|3346076_3347363_+	YeaH/YhbH family protein	NA	A0A140HLI1	Bacillus_phage	36.3	1.3e-10
WP_139115274.1|3347488_3347677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001527766.1|3348008_3349502_+	GGDEF domain-containing protein	NA	A0A127AWB9	Bacillus_phage	28.3	2.0e-10
>prophage 239
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3369813	3370344	4651105		Escherichia_phage(100.0%)	1	NA	NA
WP_000929974.1|3369813_3370344_+	cytochrome b	NA	A0A0U2QLA7	Escherichia_phage	70.5	2.8e-36
>prophage 240
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3374996	3399018	4651105	tail,integrase	Enterobacteria_phage(18.75%)	26	3385078:3385093	3397715:3397730
WP_001529121.1|3374996_3375554_-	virulence membrane protein PagC	NA	Q9LA63	Enterobacterial_phage	33.0	1.7e-15
WP_071585785.1|3375587_3375785_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001529092.1|3376120_3376312_-	hypothetical protein	NA	NA	NA	NA	NA
WP_024138908.1|3376360_3376624_+	virulence protein PagD	NA	NA	NA	NA	NA
WP_001529140.1|3376764_3376977_+	cold shock-like protein CspH	NA	NA	NA	NA	NA
WP_058673896.1|3377393_3377915_+	ricin-type beta-trefoil lectin domain protein	NA	NA	NA	NA	NA
WP_000497451.1|3378105_3378345_+	virulence protein MsgA	NA	K7P6H1	Enterobacteria_phage	88.6	8.5e-33
WP_001529135.1|3379224_3380034_+	cytolethal distending toxin S-CDT	NA	A5LH53	Enterobacteria_phage	50.0	2.1e-62
WP_001277616.1|3380106_3380484_+	DUF1353 domain-containing protein	NA	I1TQ41	Pseudomonas_phage	38.4	2.2e-14
WP_000158843.1|3380631_3381174_-	glycoside hydrolase family 108 protein	NA	A0A0U2S643	Escherichia_phage	67.0	6.2e-71
WP_001529122.1|3381357_3382086_-	pertussis-like toxin subunit ArtA	NA	A0A0U2KD26	Escherichia_phage	52.0	4.6e-61
WP_000275697.1|3382102_3382516_-	subtilase cytotoxin subunit B	NA	A0A0U2KD34	Escherichia_phage	37.7	3.2e-19
WP_001529189.1|3383559_3384684_-	type III secretion system effector SopF	NA	NA	NA	NA	NA
3385078:3385093	attL	TAATAAAAACGGGAAC	NA	NA	NA	NA
WP_001521673.1|3385130_3385343_-	isocitrate dehydrogenase	NA	Q77Z09	Phage_21	92.6	1.5e-20
WP_000334552.1|3385596_3386268_+	SOS response-associated peptidase	NA	A0A2H4J5W2	uncultured_Caudovirales_phage	59.9	8.2e-81
WP_000481982.1|3386587_3388690_-	type III secretion system effector E3 ubiquitin transferase SspH1	NA	Q9MBL9	Phage_Gifsy-2	48.5	1.0e-28
WP_000457876.1|3390219_3390345_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001520426.1|3390608_3390725_+	hypothetical protein	NA	NA	NA	NA	NA
WP_071587915.1|3390915_3391116_+	PagK	NA	NA	NA	NA	NA
WP_001529184.1|3391212_3391623_-|tail	tail assembly protein	tail	A0A1B0V844	Salmonella_phage	83.6	2.0e-58
WP_023219691.1|3391629_3392724_-	hypothetical protein	NA	Q8HAB4	Salmonella_phage	98.2	1.0e-56
WP_071646071.1|3392710_3393298_-	DUF2313 domain-containing protein	NA	A0A192Y5V3	Salmonella_phage	99.5	8.3e-114
WP_001529171.1|3395102_3395492_-	RusA family crossover junction endodeoxyribonuclease	NA	K7PH72	Enterobacteria_phage	86.8	9.2e-61
WP_000089141.1|3396285_3396522_+	excisionase	NA	NA	NA	NA	NA
WP_023139988.1|3396511_3397654_+|integrase	tyrosine-type recombinase/integrase	integrase	O21929	Phage_21	80.0	1.8e-173
WP_000444507.1|3397767_3399018_-	NADP-dependent isocitrate dehydrogenase	NA	Q77Z09	Phage_21	90.7	1.1e-19
3397715:3397730	attR	TAATAAAAACGGGAAC	NA	NA	NA	NA
>prophage 241
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3402545	3403916	4651105		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_000423763.1|3402545_3403916_+	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	45.3	8.5e-109
>prophage 242
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3409290	3411274	4651105		Bacillus_virus(50.0%)	2	NA	NA
WP_000531582.1|3409290_3410427_+	spermidine/putrescine ABC transporter ATP-binding protein PotA	NA	G3M9Y6	Bacillus_virus	34.0	2.1e-28
WP_000799391.1|3410410_3411274_+	spermidine/putrescine ABC transporter permease PotB	NA	Q6GZ02	Mycoplasma_phage	26.2	2.0e-10
>prophage 243
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3414860	3418586	4651105		Vibrio_phage(50.0%)	4	NA	NA
WP_001191856.1|3414860_3415682_-	NAD-dependent protein deacylase	NA	A0A2I7S9Y2	Vibrio_phage	33.5	1.0e-21
WP_000291330.1|3415700_3416612_-	N-acetylglucosamine kinase	NA	NA	NA	NA	NA
WP_001529117.1|3416640_3417885_-	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA	NA
WP_001033714.1|3417884_3418586_-	lipoprotein-releasing ABC transporter ATP-binding protein LolD	NA	G9BWD6	Planktothrix_phage	40.7	2.4e-35
>prophage 244
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3424771	3425029	4651105		Erwinia_phage(100.0%)	1	NA	NA
WP_000706734.1|3424771_3425029_-	DUF1471 domain-containing protein	NA	A0A1B2IFR9	Erwinia_phage	37.1	2.1e-05
>prophage 245
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3438188	3438830	4651105		Pseudomonas_phage(100.0%)	1	NA	NA
WP_000535399.1|3438188_3438830_-	dTMP kinase	NA	Q2Z0N0	Pseudomonas_phage	35.7	3.2e-26
>prophage 246
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3448449	3449576	4651105		Ralstonia_phage(50.0%)	2	NA	NA
WP_000103754.1|3448449_3448686_-	acyl carrier protein	NA	B2ZXV3	Ralstonia_phage	45.2	1.5e-10
WP_000007236.1|3448841_3449576_-	3-oxoacyl-ACP reductase FabG	NA	Q06VL0	Trichoplusia_ni_ascovirus	33.5	1.7e-15
>prophage 247
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3463380	3464331	4651105		Brevibacillus_phage(100.0%)	1	NA	NA
WP_000578688.1|3463380_3464331_-	flagellar assembly peptidoglycan hydrolase FlgJ	NA	S5M633	Brevibacillus_phage	31.8	2.2e-10
>prophage 248
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3480341	3480587	4651105		Salmonella_phage(100.0%)	1	NA	NA
WP_142128369.1|3480341_3480587_+	DNA damage-inducible protein I	NA	H6WRY5	Salmonella_phage	52.6	2.6e-13
>prophage 249
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3485246	3486167	4651105		Morganella_phage(100.0%)	1	NA	NA
WP_000163973.1|3485246_3486167_+	LpxL/LpxP family Kdo(2)-lipid IV(A) lauroyl/palmitoleoyl acyltransferasee	NA	A0A1W6JP29	Morganella_phage	40.5	8.1e-55
>prophage 250
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3495229	3495769	4651105		Scale_drop_disease_virus(100.0%)	1	NA	NA
WP_000203939.1|3495229_3495769_-	O-acetyl-ADP-ribose deacetylase	NA	A0A0K1L687	Scale_drop_disease_virus	49.7	6.4e-28
>prophage 251
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3499920	3500754	4651105		Pelagibacter_phage(100.0%)	1	NA	NA
WP_001137620.1|3499920_3500754_+	curli production assembly/transport protein CsgG	NA	M1ICK2	Pelagibacter_phage	40.5	3.3e-39
>prophage 252
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3510653	3514276	4651105		Aeromonas_phage(33.33%)	3	NA	NA
WP_000628085.1|3510653_3512150_+	sodium:solute symporter	NA	A0A240F3J2	Aeromonas_phage	22.9	1.3e-17
WP_000433674.1|3512434_3513316_+	MurR/RpiR family transcriptional regulator	NA	A0A2P0VNK5	Tetraselmis_virus	28.9	3.3e-05
WP_001617488.1|3513421_3514276_-	phosphate starvation-inducible protein PhoH	NA	R4II13	Cronobacter_phage	76.7	5.9e-92
>prophage 253
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3522219	3522387	4651105		Enterobacteria_phage(100.0%)	1	NA	NA
WP_001273663.1|3522219_3522387_-	general stress protein	NA	Q9KX95	Enterobacteria_phage	92.6	1.4e-05
>prophage 254
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3528671	3530913	4651105		Klosneuvirus(50.0%)	3	NA	NA
WP_000420603.1|3528671_3529592_+	curved DNA-binding protein	NA	A0A1V0SIM1	Klosneuvirus	46.7	3.2e-11
WP_001284251.1|3529591_3529897_+	chaperone modulator CbpM	NA	NA	NA	NA	NA
WP_001537781.1|3530550_3530913_+	anti-adapter protein IraM	NA	Q20GJ2	Phage_258-320	43.5	2.4e-23
>prophage 255
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3544276	3544957	4651105		Bacillus_phage(100.0%)	1	NA	NA
WP_001529126.1|3544276_3544957_+	response regulator transcription factor HprR	NA	W8CYM9	Bacillus_phage	36.1	1.3e-33
>prophage 256
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3552907	3554706	4651105	protease	Phage_Gifsy-2(50.0%)	2	NA	NA
WP_000594485.1|3552907_3553429_+	PipA/GogA/GtgA family type III secretion system effector	NA	Q9MBM0	Phage_Gifsy-2	73.3	7.8e-63
WP_000374046.1|3554046_3554706_+|protease	FtsH protease modulator YccA	protease	A0A2H4JFM9	uncultured_Caudovirales_phage	52.4	2.7e-44
>prophage 257
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3560485	3562540	4651105		Bacillus_phage(100.0%)	1	NA	NA
WP_001529137.1|3560485_3562540_-	DNA helicase IV	NA	A7KV33	Bacillus_phage	27.3	1.4e-19
>prophage 258
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3575061	3576969	4651105		Tupanvirus(100.0%)	1	NA	NA
WP_000053043.1|3575061_3576969_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	29.8	2.4e-53
>prophage 259
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3582221	3592216	4651105	tRNA	Acinetobacter_phage(25.0%)	7	NA	NA
WP_000193775.1|3582221_3584834_-	aminopeptidase N	NA	A0A0P0IY26	Acinetobacter_phage	22.8	3.7e-20
WP_001528805.1|3585100_3586303_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_000117870.1|3586471_3587872_+|tRNA	asparagine--tRNA ligase	tRNA	A0A167RLM0	Powai_lake_megavirus	35.1	4.5e-81
WP_000977709.1|3588464_3589556_+	porin OmpF	NA	Q1MVN1	Enterobacteria_phage	51.7	1.7e-99
WP_000462653.1|3589740_3590931_+	aspartate transaminase	NA	NA	NA	NA	NA
WP_058673968.1|3590992_3591640_-	MBL fold metallo-hydrolase	NA	NA	NA	NA	NA
WP_000357052.1|3591667_3592216_-	YcbK family protein	NA	A0A0K1LKR7	Rhodobacter_phage	33.7	1.2e-05
>prophage 260
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3607159	3611663	4651105		Bacillus_phage(66.67%)	3	NA	NA
WP_080218208.1|3607159_3608908_-	lipid A ABC transporter ATP-binding protein/permease MsbA	NA	W8CYL7	Bacillus_phage	30.5	4.2e-60
WP_015406036.1|3608944_3611149_-	ComEC family protein	NA	Q332C0	Clostridium_botulinum_C_phage	22.6	1.6e-08
WP_000167332.1|3611378_3611663_-	integration host factor subunit beta	NA	A7KV42	Bacillus_phage	40.2	4.1e-10
>prophage 261
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3616719	3617808	4651105		Streptococcus_phage(100.0%)	1	NA	NA
WP_001604263.1|3616719_3617808_-	3-phosphoserine/phosphohydroxythreonine transaminase	NA	M1Q1P2	Streptococcus_phage	46.5	1.2e-78
>prophage 262
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3621903	3626590	4651105		Tetraselmis_virus(100.0%)	3	NA	NA
WP_001292803.1|3621903_3624186_+	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	42.0	1.1e-161
WP_058673966.1|3624257_3625217_-	type III secretion system effector SopD2	NA	NA	NA	NA	NA
WP_023785365.1|3625765_3626590_+	pyruvate formate lyase 1-activating protein	NA	A0A2P0VNQ0	Tetraselmis_virus	26.5	2.8e-22
>prophage 263
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3630883	3647675	4651105	tRNA	Escherichia_phage(25.0%)	10	NA	NA
WP_000213069.1|3630883_3631501_-	dimethylsulfoxide reductase subunit B	NA	A0A077SL61	Escherichia_phage	59.6	4.3e-76
WP_000850250.1|3631511_3633956_-	dimethylsulfoxide reductase subunit A	NA	A0A077SK27	Escherichia_phage	50.5	5.4e-223
WP_000886699.1|3634193_3635486_-|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	44.9	7.3e-94
WP_001528842.1|3635744_3637088_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	40.9	1.6e-80
WP_001519746.1|3637097_3637709_-	outer membrane lipoprotein chaperone LolA	NA	NA	NA	NA	NA
WP_001528816.1|3637851_3641928_-	DNA translocase FtsK	NA	S5VNE3	Mycobacterium_phage	49.5	2.9e-88
WP_000228469.1|3642062_3642557_-	leucine-responsive transcriptional regulator Lrp	NA	NA	NA	NA	NA
WP_000537406.1|3643103_3644072_+	thioredoxin-disulfide reductase	NA	A0A2I2L5E1	Orpheovirus	45.5	6.5e-63
WP_001044531.1|3644186_3645953_+	cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	NA	W8CYL7	Bacillus_phage	25.1	6.0e-22
WP_001202257.1|3645953_3647675_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	NA	W8CYL7	Bacillus_phage	23.5	6.4e-13
>prophage 264
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3652229	3658524	4651105	protease	Agrobacterium_phage(20.0%)	5	NA	NA
WP_000934064.1|3652229_3654506_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	protease	A0A223W0B1	Agrobacterium_phage	42.3	6.2e-165
WP_000520789.1|3654536_3654857_-|protease	ATP-dependent Clp protease adapter ClpS	protease	A0A1B1IT64	uncultured_Mediterranean_phage	45.7	4.5e-13
WP_000447499.1|3655180_3655402_+	cold shock-like protein CspD	NA	A0A2H4N7Y6	Lake_Baikal_phage	64.2	9.3e-18
WP_000125899.1|3655531_3657478_-	macrolide ABC transporter ATP-binding protein/permease MacB	NA	G9BWD6	Planktothrix_phage	42.3	9.1e-40
WP_142128375.1|3657474_3658524_-	macrolide transporter subunit MacA	NA	A0A140XAI1	Dickeya_phage	38.9	1.3e-08
>prophage 265
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3665376	3667095	4651105		Yellowstone_lake_phycodnavirus(100.0%)	1	NA	NA
WP_000815324.1|3665376_3667095_+	ubiquinone-dependent pyruvate dehydrogenase	NA	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	24.2	6.4e-29
>prophage 266
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3670684	3673435	4651105		Roseobacter_phage(50.0%)	4	NA	NA
WP_001202293.1|3670684_3671515_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0UZW5	Roseobacter_phage	30.7	2.3e-08
WP_001160725.1|3671511_3671835_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA	NA
WP_001270726.1|3671962_3672478_+	lipoprotein	NA	NA	NA	NA	NA
WP_000027186.1|3672706_3673435_+	arginine ABC transporter ATP-binding protein ArtP	NA	G9BWD6	Planktothrix_phage	35.8	5.1e-28
>prophage 267
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3680232	3689398	4651105		Streptococcus_phage(25.0%)	11	NA	NA
WP_001528785.1|3680232_3681360_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	NA	A0A1X9I6F4	Streptococcus_phage	25.7	3.4e-23
WP_000505788.1|3681402_3681876_-	YbjO family protein	NA	NA	NA	NA	NA
WP_001528847.1|3681949_3682795_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA	NA
WP_000105453.1|3682791_3683745_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA	NA
WP_001000698.1|3683754_3684888_-	putrescine ABC transporter ATP-binding subunit PotG	NA	G3M9Y6	Bacillus_virus	34.9	6.5e-30
WP_000125769.1|3684975_3686088_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA	NA
WP_000624810.1|3686436_3686913_-	YbjN domain-containing protein	NA	NA	NA	NA	NA
WP_000684361.1|3687008_3687911_-	30S ribosomal protein S6--L-glutamate ligase	NA	A0A1D7SR78	Cyanophage	34.0	3.5e-34
WP_000075300.1|3687968_3688691_-	nitroreductase NfsA	NA	NA	NA	NA	NA
WP_001259128.1|3688674_3688965_-	YbjC family protein	NA	NA	NA	NA	NA
WP_000495513.1|3689134_3689398_+	glutaredoxin, GrxA family	NA	A0A2I7SAE2	Vibrio_phage	70.5	5.9e-27
>prophage 268
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3696969	3698975	4651105		Escherichia_phage(50.0%)	2	NA	NA
WP_000450103.1|3696969_3697728_+	DNA-binding transcriptional repressor DeoR	NA	A0A077SK06	Escherichia_phage	29.6	5.2e-15
WP_000195710.1|3697772_3698975_-	serine-type D-Ala-D-Ala carboxypeptidase	NA	B6DZZ7	Stx2-converting_phage	47.1	3.1e-99
>prophage 269
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3720698	3727262	4651105		Citrobacter_phage(50.0%)	4	NA	NA
WP_000192667.1|3720698_3723131_+	glycyl radical protein	NA	A0A076YHZ7	Citrobacter_phage	43.5	2.1e-09
WP_000217907.1|3723208_3724018_-	HAD family hydrolase	NA	NA	NA	NA	NA
WP_058673959.1|3724279_3725545_+	DUF1479 domain-containing protein	NA	NA	NA	NA	NA
WP_000961480.1|3725666_3727262_-	ABC-F family ATPase	NA	A0A2K9L0W2	Tupanvirus	27.9	2.7e-58
>prophage 270
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3732249	3737559	4651105		Enterobacteria_phage(33.33%)	6	NA	NA
WP_000716763.1|3732249_3732765_-	outer membrane protein OmpX	NA	A5LH44	Enterobacteria_phage	34.2	1.1e-16
WP_001119555.1|3733118_3734006_+	threonine/homoserine exporter RhtA	NA	NA	NA	NA	NA
WP_000100805.1|3734308_3734812_+	DNA starvation/stationary phase protection protein Dps	NA	A0A222YYG6	Streptomyces_phage	23.0	7.1e-05
WP_000838671.1|3735288_3736035_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA	NA
WP_001159076.1|3736180_3736840_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA	NA
WP_000569093.1|3736836_3737559_+	glutamine ABC transporter ATP-binding protein GlnQ	NA	G9BWD6	Planktothrix_phage	43.2	1.9e-35
>prophage 271
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3741033	3750346	4651105		Acinetobacter_phage(25.0%)	8	NA	NA
WP_000146332.1|3741033_3741300_+	DksA/TraR family C4-type zinc finger protein	NA	E5E4B1	Acinetobacter_phage	52.8	1.7e-13
WP_000849089.1|3741584_3741845_+	DUF1471 domain-containing protein	NA	NA	NA	NA	NA
WP_000386492.1|3742000_3742975_-	DNA-binding protein YbiB	NA	NA	NA	NA	NA
WP_001218630.1|3743004_3745149_-	ATP-dependent DNA helicase DinG	NA	A0A127AW80	Bacillus_phage	26.7	7.4e-43
WP_001528759.1|3745356_3746718_-	ATP-dependent RNA helicase RhlE	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	34.2	5.0e-53
WP_001025260.1|3746947_3747622_+	transcriptional regulator CecR	NA	NA	NA	NA	NA
WP_001528821.1|3747621_3748617_+	secretion protein HlyD	NA	NA	NA	NA	NA
WP_001528746.1|3748609_3750346_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	30.9	3.5e-19
>prophage 272
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3761290	3764556	4651105		Streptococcus_phage(50.0%)	2	NA	NA
WP_001528781.1|3761290_3762199_+	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	29.9	2.0e-26
WP_001528838.1|3762288_3764556_-	SPI-1 type III secretion system effector E3 ubiquitin transferase SlrP	NA	Q9MBL9	Phage_Gifsy-2	43.0	1.1e-15
>prophage 273
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3771416	3774846	4651105		Klosneuvirus(50.0%)	3	NA	NA
WP_001528769.1|3771416_3772706_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	NA	A0A1V0SKB7	Klosneuvirus	28.5	7.7e-19
WP_000767403.1|3772763_3773240_+	kinase inhibitor	NA	NA	NA	NA	NA
WP_142128377.1|3773385_3774846_-	histidine ammonia-lyase	NA	A0A1V0S940	Catovirus	40.2	3.2e-82
>prophage 274
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3785223	3792840	4651105		Planktothrix_phage(33.33%)	8	NA	NA
WP_000891710.1|3785223_3786282_-	molybdenum ABC transporter ATP-binding protein ModC	NA	G9BWD6	Planktothrix_phage	34.3	5.1e-21
WP_000604026.1|3786284_3786974_-	molybdate ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_000951416.1|3786973_3787747_-	molybdate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_000891513.1|3787912_3788062_-	multidrug efflux pump-associated protein, AcrZ family	NA	NA	NA	NA	NA
WP_001147416.1|3788190_3788979_+	molybdenum-dependent transcriptional regulator	NA	NA	NA	NA	NA
WP_001528770.1|3789046_3790522_+	molybdate ABC transporter ATP-binding protein ModF	NA	A0A2R8FG22	Brazilian_cedratvirus	29.2	8.8e-11
WP_001528748.1|3790692_3791601_+	DUF2167 domain-containing protein	NA	NA	NA	NA	NA
WP_001528808.1|3791823_3792840_+	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	47.3	4.2e-81
>prophage 275
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3797148	3802681	4651105		Bacillus_virus(25.0%)	6	NA	NA
WP_001528834.1|3797148_3797925_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	25.5	3.2e-12
WP_001528782.1|3797924_3799004_-	iron ABC transporter permease	NA	NA	NA	NA	NA
WP_001528822.1|3799157_3800210_-	3-deoxy-7-phosphoheptulonate synthase AroG	NA	A0A0B6VT43	Edwardsiella_phage	47.1	4.9e-80
WP_000784380.1|3800529_3800916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000951250.1|3801026_3801965_+	CDF family zinc transporter ZitB	NA	A0A1V0SED0	Indivirus	28.1	1.0e-25
WP_000345365.1|3801961_3802681_-	nicotinamide riboside transporter PnuC	NA	A0A126HGA3	Vibrio_phage	35.3	3.7e-23
>prophage 276
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3828980	3829772	4651105		Kaumoebavirus(100.0%)	1	NA	NA
WP_001528819.1|3828980_3829772_-	endonuclease VIII	NA	A0A1V0CNR6	Kaumoebavirus	25.7	6.8e-10
>prophage 277
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3834884	3842075	4651105	integrase	Tupanvirus(33.33%)	7	3831368:3831382	3843315:3843329
3831368:3831382	attL	TCAGCATGAACATTG	NA	NA	NA	NA
WP_001528845.1|3834884_3835595_-	ABC transporter ATP-binding protein	NA	A0A2K9L3Z8	Tupanvirus	25.8	2.8e-07
WP_000998822.1|3835598_3836369_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_001528796.1|3836496_3837630_-	glycosyltransferase family 4 protein	NA	NA	NA	NA	NA
WP_015406050.1|3837642_3838536_-	glycosyltransferase family 2 protein	NA	NA	NA	NA	NA
WP_001528772.1|3838535_3839687_-	UDP-galactopyranose mutase	NA	E4ZFQ1	Streptococcus_phage	41.6	1.4e-80
WP_001194235.1|3839972_3840713_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000824704.1|3841508_3842075_-|integrase	tyrosine-type recombinase/integrase	integrase	A0A2L1IV36	Escherichia_phage	54.4	4.3e-51
3843315:3843329	attR	CAATGTTCATGCTGA	NA	NA	NA	NA
>prophage 278
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3845983	3853416	4651105		Acinetobacter_phage(33.33%)	6	NA	NA
WP_001041124.1|3845983_3847465_+	MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	28.7	1.4e-45
WP_001528762.1|3847503_3848925_-	deoxyribodipyrimidine photo-lyase	NA	A0A1V0SGL1	Hokovirus	31.7	2.7e-57
WP_000401437.1|3849035_3849242_-	YbfA family protein	NA	NA	NA	NA	NA
WP_001670793.1|3849578_3849668_+	K(+)-transporting ATPase subunit F	NA	NA	NA	NA	NA
WP_000730068.1|3849667_3851347_+	potassium-transporting ATPase subunit KdpA	NA	NA	NA	NA	NA
WP_000088026.1|3851367_3853416_+	potassium-transporting ATPase subunit KdpB	NA	M1HBF8	Paramecium_bursaria_Chlorella_virus	23.3	1.9e-27
>prophage 279
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3856686	3857364	4651105		Bacillus_phage(100.0%)	1	NA	NA
WP_000186053.1|3856686_3857364_+	two-component system response regulator KdpE	NA	W8CYM9	Bacillus_phage	30.6	5.8e-26
>prophage 280
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3868447	3878442	4651105	tRNA	Lactobacillus_phage(25.0%)	7	NA	NA
WP_000228705.1|3868447_3869851_+	FAD-dependent tricarballylate dehydrogenase TcuA	NA	A0A2P0ZL82	Lactobacillus_phage	26.2	7.8e-09
WP_058673950.1|3869837_3870977_+	tricarballylate utilization protein TcuB	NA	NA	NA	NA	NA
WP_000057014.1|3871027_3872332_+	tricarballylate/proton symporter TcuC	NA	Q6JIH2	Burkholderia_virus	34.9	1.2e-59
WP_000722260.1|3872380_3872713_-	lipoprotein	NA	NA	NA	NA	NA
WP_001258803.1|3872762_3874169_-	chitoporin	NA	NA	NA	NA	NA
WP_001529063.1|3874614_3876279_-|tRNA	glutamine--tRNA ligase	tRNA	A0A222YZ70	Escherichia_phage	95.8	0.0e+00
WP_001529049.1|3876489_3878442_-	PTS N-acetyl glucosamine transporter subunit IIABC	NA	A0A2I7SAJ6	Vibrio_phage	48.6	6.4e-09
>prophage 281
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3883096	3884761	4651105		Ostreococcus_tauri_virus(100.0%)	1	NA	NA
WP_058673949.1|3883096_3884761_+	asparagine synthase B	NA	A9YVS6	Ostreococcus_tauri_virus	39.0	2.1e-85
>prophage 282
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3888732	3889818	4651105		Pseudomonas_phage(100.0%)	1	NA	NA
WP_000493272.1|3888732_3889818_+	PhoH family protein	NA	A0A0S0MVD6	Pseudomonas_phage	45.6	6.6e-48
>prophage 283
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3895718	3896444	4651105		Planktothrix_phage(100.0%)	1	NA	NA
WP_000631369.1|3895718_3896444_+	glutamate/aspartate ABC transporter ATP binding protein GltL	NA	G9BWD6	Planktothrix_phage	36.3	8.7e-28
>prophage 284
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3902912	3905495	4651105	tRNA	Staphylococcus_phage(100.0%)	1	NA	NA
WP_001157912.1|3902912_3905495_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	42.7	5.6e-186
>prophage 285
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3913721	3916206	4651105		Synechococcus_phage(50.0%)	2	NA	NA
WP_001529015.1|3913721_3914855_+	endolytic peptidoglycan transglycosylase RlpA	NA	F5B3X9	Synechococcus_phage	53.2	4.8e-09
WP_000858711.1|3914994_3916206_+	D-alanyl-D-alanine carboxypeptidase DacA	NA	B6DZZ7	Stx2-converting_phage	49.7	3.4e-101
>prophage 286
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3921041	3921695	4651105		uncultured_Caudovirales_phage(50.0%)	2	NA	NA
WP_000939753.1|3921041_3921425_+	fluoride efflux transporter CrcB	NA	A0A2H4J148	uncultured_Caudovirales_phage	48.6	1.7e-22
WP_000034826.1|3921485_3921695_-	transcription antiterminator/RNA stability regulator CspE	NA	A0A1W6JNX5	Morganella_phage	78.1	5.9e-22
>prophage 287
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3936811	3943357	4651105		Morganella_phage(33.33%)	6	NA	NA
WP_000278499.1|3936811_3937240_+	universal stress protein UspG	NA	A0A1W6JNV4	Morganella_phage	39.2	1.3e-18
WP_001528999.1|3937306_3938074_-	dimethyl sulfoxide reductase anchor subunit	NA	NA	NA	NA	NA
WP_015406061.1|3938073_3938631_-	4Fe-4S dicluster domain-containing protein	NA	NA	NA	NA	NA
WP_001529022.1|3938627_3940907_-	molybdopterin-dependent oxidoreductase	NA	A0A077SK27	Escherichia_phage	25.4	2.9e-45
WP_000377439.1|3940899_3941460_-	molecular chaperone	NA	NA	NA	NA	NA
WP_000887644.1|3941791_3943357_-	alkyl hydroperoxide reductase subunit F	NA	G3MA85	Bacillus_virus	34.0	3.2e-43
>prophage 288
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3946732	3948558	4651105		Streptococcus_phage(50.0%)	2	NA	NA
WP_058673947.1|3946732_3947968_+	phosphoadenosine phosphosulfate reductase	NA	A0A220GKF8	Streptococcus_phage	33.8	2.3e-60
WP_001164752.1|3947940_3948558_+	ParB-like nuclease domain-containing protein	NA	A0A0F7L444	uncultured_marine_virus	51.3	1.7e-53
>prophage 289
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3963030	3969149	4651105		Klosneuvirus(50.0%)	3	NA	NA
WP_000140623.1|3963030_3963825_+	iron-enterobactin ABC transporter ATP-binding protein	NA	A0A1V0SJ29	Klosneuvirus	24.4	6.4e-08
WP_058673944.1|3963878_3965015_-	LPS O-antigen length regulator	NA	NA	NA	NA	NA
WP_001529061.1|3965264_3969149_-	enterobactin non-ribosomal peptide synthetase EntF	NA	A0A2K9KZV5	Tupanvirus	28.5	8.4e-61
>prophage 290
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	3985360	3994943	4651105	integrase	Salmonella_phage(60.0%)	8	3990393:3990406	3999418:3999431
WP_015406068.1|3985360_3986686_-	pyridine nucleotide-disulfide oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	46.5	6.1e-104
WP_001529002.1|3986901_3987756_+	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_071587908.1|3988160_3988451_+	GHKL domain-containing protein	NA	NA	NA	NA	NA
WP_000981670.1|3988686_3988896_+	hypothetical protein	NA	NA	NA	NA	NA
WP_000915523.1|3989320_3989683_+	GtrA family protein	NA	I1TED9	Salmonella_phage	100.0	3.9e-61
WP_001528973.1|3989679_3990606_+	glycosyltransferase family 2 protein	NA	I1TED8	Salmonella_phage	97.4	3.8e-169
3990393:3990406	attL	TATGTCATTCCTTT	NA	NA	NA	NA
WP_124084117.1|3992294_3992525_-	hypothetical protein	NA	A0A291AX01	Salmonella_phage	65.2	9.7e-18
WP_142128383.1|3993617_3994943_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A221SAN4	Ralstonia_phage	26.7	6.5e-05
3999418:3999431	attR	TATGTCATTCCTTT	NA	NA	NA	NA
>prophage 291
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4032154	4032640	4651105		Ralstonia_phage(100.0%)	1	NA	NA
WP_142128428.1|4032154_4032640_-	transglycosylase SLT domain-containing protein	NA	A0A0K2QQJ4	Ralstonia_phage	32.7	6.9e-05
>prophage 292
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4043476	4044217	4651105		Vibrio_virus(100.0%)	1	NA	NA
WP_142128443.1|4043476_4044217_-	type IV pilus major pilin	NA	Q8LTI3	Vibrio_virus	35.1	1.3e-15
>prophage 293
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4054322	4055927	4651105	transposase	uncultured_virus(100.0%)	1	NA	NA
WP_142128456.1|4054322_4055927_-|transposase	IS66 family transposase	transposase	A0A218MNE7	uncultured_virus	38.9	5.3e-86
>prophage 294
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4071334	4072117	4651105		Escherichia_phage(100.0%)	1	NA	NA
WP_032666787.1|4071334_4072117_+	AAA family ATPase	NA	A0A2L1IVB6	Escherichia_phage	97.3	1.6e-136
>prophage 295
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4080115	4084620	4651105		Pseudomonas_phage(50.0%)	9	NA	NA
WP_142128498.1|4080115_4080934_+	DUF932 domain-containing protein	NA	K4F5L3	Cronobacter_phage	36.8	5.3e-42
WP_142128500.1|4080933_4081206_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142128502.1|4081326_4081698_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142128504.1|4081778_4082237_+	antirestriction protein	NA	I6WC98	Pseudomonas_phage	31.9	2.3e-10
WP_142128505.1|4082248_4082728_+	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_142128507.1|4082743_4083034_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142128509.1|4083030_4083252_+	DUF987 family protein	NA	A0A142F0X9	Klebsiella_phage	40.3	5.7e-07
WP_142128511.1|4083607_4083979_+	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA	NA
WP_142128513.1|4083975_4084620_+	antitoxin of toxin-antitoxin stability system	NA	A0A2I6PI07	Pseudomonas_phage	32.9	1.7e-27
>prophage 296
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4096850	4101283	4651105	tRNA	Enterococcus_phage(50.0%)	5	NA	NA
WP_080218124.1|4096850_4097717_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	36.5	4.2e-29
WP_000190278.1|4097718_4097931_+	ribosome-associated protein YbcJ	NA	NA	NA	NA	NA
WP_001143505.1|4098058_4098604_+	metal-dependent hydrolase	NA	NA	NA	NA	NA
WP_001529075.1|4099029_4099854_+	DUF2145 domain-containing protein	NA	NA	NA	NA	NA
WP_001529008.1|4099897_4101283_-|tRNA	cysteine--tRNA ligase	tRNA	M1PG92	Moumouvirus	35.5	1.1e-44
>prophage 297
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4106237	4107254	4651105		Planktothrix_phage(100.0%)	1	NA	NA
WP_000569662.1|4106237_4107254_-	virulence-associated ABC transporter ATP-binding protein SfbB	NA	G9BWD6	Planktothrix_phage	38.2	1.3e-32
>prophage 298
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4112107	4112794	4651105		Planktothrix_phage(100.0%)	1	NA	NA
WP_001110598.1|4112107_4112794_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	2.1e-31
>prophage 299
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4116068	4121287	4651105		Bacillus_virus(50.0%)	5	NA	NA
WP_000140195.1|4116068_4116746_-	iron ABC transporter ATP-binding protein FetA	NA	G3M9Y6	Bacillus_virus	32.5	3.0e-22
WP_080218122.1|4116892_4117810_+	SPFH/Band 7/PHB domain protein	NA	NA	NA	NA	NA
WP_000561177.1|4117806_4118259_+	NfeD family protein	NA	NA	NA	NA	NA
WP_001026760.1|4118259_4118676_-	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA	NA
WP_000083913.1|4118785_4121287_+	copper-exporting P-type ATPase CopA	NA	A0A218MNH6	uncultured_virus	37.2	6.7e-112
>prophage 300
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4130385	4141245	4651105	transposase	Acanthamoeba_polyphaga_moumouvirus(20.0%)	12	NA	NA
WP_001529070.1|4130385_4131357_+	acetyl esterase	NA	L7RDF8	Acanthamoeba_polyphaga_moumouvirus	27.4	6.6e-15
WP_080218121.1|4131353_4132316_-	ferrochelatase	NA	NA	NA	NA	NA
WP_001529019.1|4132500_4133145_-	adenylate kinase	NA	NA	NA	NA	NA
WP_001523272.1|4133386_4135261_-	molecular chaperone HtpG	NA	A0A1B1ISV4	uncultured_Mediterranean_phage	36.9	1.7e-115
WP_001195023.1|4135371_4135977_-	recombination protein RecR	NA	NA	NA	NA	NA
WP_000467098.1|4135976_4136306_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_001529011.1|4136351_4138280_-	DNA polymerase III subunit gamma/tau	NA	A0A1L2BWV7	Bacteriophage	41.5	2.3e-43
WP_000127350.1|4138393_4138945_-	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	45.2	1.0e-28
WP_001189860.1|4139097_4139475_-	DUF454 family protein	NA	NA	NA	NA	NA
WP_000926652.1|4139555_4140071_+	primosomal replication protein N''	NA	NA	NA	NA	NA
WP_000051161.1|4140084_4140252_+	pleiotropic regulatory protein RsmS	NA	NA	NA	NA	NA
WP_000440518.1|4140321_4141245_+|transposase	Rpn family recombination-promoting nuclease/putative transposase	transposase	Q2A0A7	Sodalis_phage	52.1	9.5e-64
>prophage 301
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4158862	4162409	4651105		Bacillus_phage(100.0%)	2	NA	NA
WP_001528972.1|4158862_4160644_-	SmdB family multidrug efflux ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.7	4.1e-39
WP_001235559.1|4160636_4162409_-	SmdA family multidrug ABC transporter permease/ATP-binding protein	NA	W8CYL7	Bacillus_phage	29.8	4.7e-51
>prophage 302
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4166806	4170971	4651105	transposase	uncultured_Caudovirales_phage(33.33%)	6	NA	NA
WP_015406079.1|4166806_4167502_+	7-cyano-7-deazaguanine synthase QueC	NA	A0A2H4J8Q7	uncultured_Caudovirales_phage	68.9	2.5e-88
WP_001194543.1|4167608_4168007_-	long-chain acyl-CoA thioesterase FadM	NA	NA	NA	NA	NA
WP_001529012.1|4168110_4168485_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142128518.1|4168677_4169655_+|transposase	IS110 family transposase	transposase	Q75QL1	Wolbachia_phage	35.4	3.9e-31
WP_142128520.1|4169656_4169839_+	hypothetical protein	NA	NA	NA	NA	NA
WP_142128522.1|4169777_4170971_+	hypothetical protein	NA	R9TRC1	Vibrio_phage	36.7	1.7e-44
>prophage 303
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4176865	4177045	4651105		Klebsiella_phage(100.0%)	1	NA	NA
WP_142128539.1|4176865_4177045_+	hypothetical protein	NA	A0A248SL60	Klebsiella_phage	58.5	1.5e-05
>prophage 304
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4181475	4186640	4651105	protease	Bacillus_phage(33.33%)	3	NA	NA
WP_001043544.1|4181475_4181748_-	DNA-binding protein HU-beta	NA	A7KV42	Bacillus_phage	58.4	1.9e-20
WP_000130314.1|4184494_4185766_-|protease	ATP-dependent protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	56.5	5.6e-131
WP_000122257.1|4186016_4186640_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	63.9	2.9e-64
>prophage 305
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4204303	4205413	4651105		Bacillus_virus(100.0%)	1	NA	NA
WP_001527281.1|4204303_4205413_+	2-aminoethylphosphonate ABC transport system ATP-binding subunit PhnT	NA	G3M9Y6	Bacillus_virus	32.8	2.8e-25
>prophage 306
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4214929	4216592	4651105		Staphylococcus_phage(50.0%)	2	NA	NA
WP_001021370.1|4214929_4215400_-	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	49.0	1.3e-29
WP_001527501.1|4215488_4216592_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A1V0SE20	Indivirus	35.2	1.1e-50
>prophage 307
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4219968	4224307	4651105	tRNA	uncultured_Mediterranean_phage(100.0%)	3	NA	NA
WP_000046629.1|4219968_4220940_-	protein translocase subunit SecF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	38.1	2.3e-44
WP_000007628.1|4222824_4223157_-	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	33.0	3.7e-10
WP_000667305.1|4223179_4224307_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	45.8	9.5e-90
>prophage 308
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4233642	4242196	4651105		Bacillus_phage(50.0%)	6	NA	NA
WP_000113918.1|4233642_4234332_-	phosphate response regulator transcription factor PhoB	NA	W8CYM9	Bacillus_phage	38.0	2.6e-37
WP_142128545.1|4234546_4235749_+	exonuclease subunit SbcD	NA	A0A0A0PQ58	Bacillus_phage	26.4	3.3e-08
WP_001527482.1|4235745_4238886_+	exonuclease subunit SbcC	NA	G3MAB6	Bacillus_virus	26.9	3.4e-12
WP_015406081.1|4239058_4240231_+	MFS transporter AraJ	NA	NA	NA	NA	NA
WP_001527114.1|4240250_4241159_-	fructokinase	NA	NA	NA	NA	NA
WP_000964305.1|4241284_4242196_+	recombination-associated protein RdgC	NA	S4TWL4	Salmonella_phage	63.6	7.1e-104
>prophage 309
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4245883	4246996	4651105		Bacillus_phage(100.0%)	1	NA	NA
WP_000484093.1|4245883_4246996_-	diguanylate cyclase AdrA	NA	A0A127AWB9	Bacillus_phage	33.1	7.3e-18
>prophage 310
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4261586	4263473	4651105		Staphylococcus_phage(100.0%)	1	NA	NA
WP_000010219.1|4261586_4263473_-	propionate--CoA ligase	NA	A0A2H4PQU7	Staphylococcus_phage	29.2	1.2e-52
>prophage 311
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4276878	4286589	4651105		Escherichia_phage(33.33%)	6	NA	NA
WP_077905989.1|4276878_4279851_-	type III restriction-modification system endonuclease	NA	Q71TG1	Escherichia_phage	26.2	2.7e-83
WP_001527437.1|4279860_4281819_-	site-specific DNA-methyltransferase	NA	Q1MVP0	Enterobacteria_phage	32.4	5.7e-82
WP_000288504.1|4282007_4283261_-	MFS transporter	NA	NA	NA	NA	NA
WP_001159470.1|4283552_4283747_-	gold resistance metallochaperone GolB	NA	NA	NA	NA	NA
WP_001020583.1|4283824_4284289_-	Au(I) sensor transcriptional regulator GolS	NA	NA	NA	NA	NA
WP_015406085.1|4284300_4286589_-	gold/copper-translocating P-type ATPase GolT	NA	E4ZFI9	Streptococcus_phage	33.2	6.0e-91
>prophage 312
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4294234	4294759	4651105		Escherichia_phage(100.0%)	1	NA	NA
WP_000830237.1|4294234_4294759_-	outer membrane beta-barrel protein	NA	B0FEG7	Escherichia_phage	29.2	1.3e-09
>prophage 313
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4308322	4379859	4651105	tail,plate,integrase	Salmonella_phage(38.89%)	73	4301338:4301352	4323499:4323513
4301338:4301352	attL	GTATTGTTATTGTTA	NA	NA	NA	NA
WP_000006337.1|4308322_4308730_-|tail	tail assembly protein	tail	A0A1B0V844	Salmonella_phage	84.2	4.1e-59
WP_080218118.1|4309958_4310639_-	DUF2612 domain-containing protein	NA	A0A0M5M1K4	Salmonella_phage	97.8	1.3e-126
WP_058673930.1|4310635_4311835_-	hypothetical protein	NA	A0A0M4RD32	Salmonella_phage	96.7	7.2e-213
WP_001526515.1|4311835_4312189_-	hypothetical protein	NA	A0A0M4R339	Salmonella_phage	96.6	2.1e-59
WP_058673929.1|4312188_4312944_-	hypothetical protein	NA	A0A0M5M1K7	Salmonella_phage	92.0	5.9e-128
WP_058673928.1|4313004_4313415_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023204233.1|4313416_4314169_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058673927.1|4314257_4314590_-	hypothetical protein	NA	A0A0M4RTY3	Salmonella_phage	68.4	8.5e-23
WP_015406092.1|4316248_4316470_+	ANR family transcriptional regulator	NA	NA	NA	NA	NA
WP_015406093.1|4316459_4316702_+	hypothetical protein	NA	NA	NA	NA	NA
WP_058673925.1|4316685_4316955_+	VRR-NUC domain-containing protein	NA	B6SD64	Bacteriophage	64.7	7.4e-25
WP_015406094.1|4316957_4317671_-	hypothetical protein	NA	NA	NA	NA	NA
WP_001527373.1|4317709_4319101_+	DEAD/DEAH box helicase	NA	Q3LZN8	Bacteriophage	73.5	1.6e-211
WP_000189281.1|4319097_4319286_+	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_001046411.1|4319292_4319760_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000772661.1|4319760_4320933_-|integrase	tyrosine-type recombinase/integrase	integrase	Q7M297	Enterobacteria_phage	49.0	5.0e-110
WP_000893217.1|4321277_4322528_-	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	48.2	4.7e-98
WP_001285275.1|4322539_4323643_-	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	39.8	6.9e-61
4323499:4323513	attR	TAACAATAACAATAC	NA	NA	NA	NA
WP_001043667.1|4323925_4324978_+	phosphoporin PhoE	NA	Q1MVN1	Enterobacteria_phage	58.8	2.6e-113
WP_000174693.1|4325028_4325430_-	sigma factor-binding protein Crl	NA	NA	NA	NA	NA
WP_000189586.1|4325487_4326732_-	esterase FrsA	NA	NA	NA	NA	NA
WP_001292018.1|4326820_4327279_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_001527425.1|4327527_4328985_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA	NA
WP_058673924.1|4329140_4329755_-	peptide chain release factor H	NA	NA	NA	NA	NA
WP_058673923.1|4329751_4330891_-	RNA ligase RtcB family protein	NA	A0A222ZM82	Mycobacterium_phage	30.5	2.9e-30
WP_001527121.1|4331109_4332165_-	DNA polymerase IV	NA	NA	NA	NA	NA
WP_001225658.1|4332414_4333155_+	murein L,D-transpeptidase	NA	NA	NA	NA	NA
WP_000333387.1|4333125_4333893_-	class II glutamine amidotransferase	NA	NA	NA	NA	NA
WP_000284051.1|4334105_4334684_-	D-sedoheptulose 7-phosphate isomerase	NA	A0A067XQR2	Caulobacter_phage	30.8	1.3e-13
WP_000973043.1|4334923_4337368_+	acyl-CoA dehydrogenase FadE	NA	NA	NA	NA	NA
WP_000015789.1|4337476_4338244_+	amidohydrolase	NA	NA	NA	NA	NA
WP_000788200.1|4338553_4338961_+	Spy/CpxP family protein refolding chaperone	NA	NA	NA	NA	NA
WP_000787605.1|4339291_4340011_+	adhesin/invasin protein PagN	NA	NA	NA	NA	NA
WP_031619101.1|4340014_4340143_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012532524.1|4340315_4340510_+	hypothetical protein	NA	NA	NA	NA	NA
WP_001527177.1|4340973_4341591_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000141548.1|4341730_4342186_-	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA	NA
WP_058673922.1|4342318_4343398_-	fimbrial protein TcfD	NA	NA	NA	NA	NA
WP_001632496.1|4343419_4346107_-	fimbrial outer membrane usher protein TcfC	NA	NA	NA	NA	NA
WP_000287812.1|4346215_4346791_-	fimbrial protein TcfB	NA	NA	NA	NA	NA
WP_058673920.1|4346841_4347552_-	fimbrial protein TcfA	NA	NA	NA	NA	NA
WP_001531405.1|4347574_4347754_-	hypothetical protein	NA	NA	NA	NA	NA
WP_023892102.1|4349422_4349737_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
WP_077463746.1|4349803_4350082_-	hypothetical protein	NA	NA	NA	NA	NA
WP_109139795.1|4350164_4350338_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058673914.1|4350522_4350780_+	type I toxin-antitoxin system SymE family toxin	NA	NA	NA	NA	NA
WP_058673913.1|4350844_4351138_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058673912.1|4351808_4352276_-	hypothetical protein	NA	NA	NA	NA	NA
WP_080242080.1|4352277_4352505_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058673910.1|4354017_4354476_-	DcrB-related protein	NA	NA	NA	NA	NA
WP_000968384.1|4357165_4357687_-	DUF2778 domain-containing protein	NA	NA	NA	NA	NA
WP_001632444.1|4357710_4358127_-	DUF2195 family protein	NA	NA	NA	NA	NA
WP_080218117.1|4359210_4360101_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000118729.1|4360097_4361441_-|plate	type VI secretion system baseplate subunit TssK	plate	NA	NA	NA	NA
WP_023263004.1|4361444_4361981_-	type VI secretion system lipoprotein TssJ	NA	NA	NA	NA	NA
WP_023260516.1|4362047_4362533_-	type VI secretion system tube protein Hcp	NA	NA	NA	NA	NA
WP_077684073.1|4362786_4363119_-	hypothetical protein	NA	NA	NA	NA	NA
WP_000013884.1|4363418_4364927_-	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA	NA
WP_000996818.1|4364950_4365493_-	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA	NA
WP_000175471.1|4365556_4365847_-	hypothetical protein	NA	NA	NA	NA	NA
WP_058673907.1|4365932_4368596_-	type VI secretion system ATPase TssH	NA	A0A248SJW6	Salicola_phage	31.2	1.4e-75
WP_058673906.1|4368963_4369866_+	type VI secretion system-associated protein TagK	NA	NA	NA	NA	NA
WP_058673905.1|4369852_4370677_+	impE family protein	NA	NA	NA	NA	NA
WP_000108007.1|4370673_4371168_+|plate	type VI secretion system baseplate subunit TssE	plate	NA	NA	NA	NA
WP_058673904.1|4371183_4373067_+|plate	type VI secretion system baseplate subunit TssF	plate	NA	NA	NA	NA
WP_058673903.1|4373063_4373411_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_142128547.1|4373411_4374059_+|plate	type VI secretion system baseplate subunit TssG	plate	NA	NA	NA	NA
WP_000367617.1|4374069_4375119_+	ImpA family type VI secretion system protein	NA	NA	NA	NA	NA
WP_001562201.1|4375648_4376380_-	DNA polymerase III subunit epsilon	NA	A0A1X9SH08	Bradyrhizobium_phage	39.0	9.9e-40
WP_000917872.1|4376443_4376911_+	ribonuclease HI	NA	J9Q745	Salmonella_phage	58.9	4.7e-51
WP_000801238.1|4376907_4377630_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA	NA
WP_001052773.1|4377664_4378420_+	hydroxyacylglutathione hydrolase	NA	NA	NA	NA	NA
WP_000644706.1|4378491_4379859_+	murein transglycosylase D	NA	A0A0A7NU10	Lactobacillus_phage	33.0	1.4e-10
>prophage 314
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4383910	4384714	4651105		Indivirus(100.0%)	1	NA	NA
WP_080218116.1|4383910_4384714_-	2,5-didehydrogluconate reductase DkgB	NA	A0A1V0SDE7	Indivirus	35.8	5.4e-39
>prophage 315
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4391417	4392449	4651105		Planktothrix_phage(100.0%)	1	NA	NA
WP_015406100.1|4391417_4392449_+	methionine ABC transporter ATP-binding protein MetN	NA	G9BWD6	Planktothrix_phage	40.6	1.5e-36
>prophage 316
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4406436	4410539	4651105		Saccharomonospora_phage(50.0%)	2	NA	NA
WP_001294832.1|4406436_4409919_-	DNA polymerase III subunit alpha	NA	Q8W6C3	Saccharomonospora_phage	36.8	3.7e-209
WP_000569411.1|4409942_4410539_-	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	39.3	4.3e-25
>prophage 317
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4419371	4420130	4651105		Flavobacterium_phage(100.0%)	1	NA	NA
WP_000947413.1|4419371_4420130_-	(2E,6E)-farnesyl-diphosphate-specific ditrans,polycis-undecaprenyl-diphosphate synthase	NA	R9W0U9	Flavobacterium_phage	42.2	1.9e-25
>prophage 318
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4432353	4438182	4651105	protease	Cyclophragma_undans_nucleopolyhedrovirus(50.0%)	3	NA	NA
WP_058674015.1|4432353_4435323_+	viral enhancin protein	NA	A0A288QW20	Cyclophragma_undans_nucleopolyhedrovirus	26.3	1.1e-49
WP_000929420.1|4435444_4436602_-	CdaR family transcriptional regulator	NA	NA	NA	NA	NA
WP_000753958.1|4436754_4438182_-|protease	serine endoprotease DegP	protease	A0A1B1IT49	uncultured_Mediterranean_phage	29.2	4.2e-26
>prophage 319
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4442165	4442510	4651105		Lake_Baikal_phage(100.0%)	1	NA	NA
WP_001278668.1|4442165_4442510_-	iron-sulfur cluster insertion protein ErpA	NA	A0A2H4N7M3	Lake_Baikal_phage	50.5	1.0e-26
>prophage 320
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4448491	4449289	4651105		Planktothrix_phage(100.0%)	1	NA	NA
WP_001157204.1|4448491_4449289_-	Fe3+-hydroxamate ABC transporter ATP-binding protein FhuC	NA	G9BWD6	Planktothrix_phage	27.4	2.7e-14
>prophage 321
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4454478	4456953	4651105		Bodo_saltans_virus(100.0%)	1	NA	NA
WP_001527468.1|4454478_4456953_-	ATP-dependent helicase HrpB	NA	A0A2H4UU36	Bodo_saltans_virus	27.7	1.2e-33
>prophage 322
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4459968	4461387	4651105		unidentified_phage(100.0%)	1	NA	NA
WP_000174615.1|4459968_4461387_+	polynucleotide adenylyltransferase PcnB	NA	H7BUW3	unidentified_phage	37.8	1.4e-26
>prophage 323
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4479889	4489593	4651105		Anomala_cuprea_entomopoxvirus(25.0%)	9	NA	NA
WP_000150617.1|4479889_4480816_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	32.7	5.9e-21
WP_000651590.1|4480924_4481587_+	carbonate dehydratase	NA	NA	NA	NA	NA
WP_000683341.1|4481644_4482181_-	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	33.1	7.8e-18
WP_000829733.1|4482386_4484777_+	pyrroloquinoline quinone-dependent dehydrogenase	NA	NA	NA	NA	NA
WP_001527544.1|4484854_4486465_-	multicopper oxidase CueO	NA	A0A0C6DWA2	Mamastrovirus	59.8	2.3e-20
WP_000846613.1|4486666_4487014_+	YacC family pilotin-like protein	NA	NA	NA	NA	NA
WP_000829974.1|4487120_4487981_+	polyamine aminopropyltransferase	NA	NA	NA	NA	NA
WP_000734276.1|4488001_4488796_+	adenosylmethionine decarboxylase	NA	NA	NA	NA	NA
WP_001527445.1|4488825_4489593_-	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	35.2	6.3e-29
>prophage 324
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4499604	4501029	4651105		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_001527420.1|4499604_4501029_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.1	1.2e-41
>prophage 325
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4512267	4512831	4651105		Sphingobium_phage(100.0%)	1	NA	NA
WP_000936326.1|4512267_4512831_-	1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD	NA	A0A1W6DX33	Sphingobium_phage	30.0	2.6e-11
>prophage 326
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4517088	4518132	4651105		Chrysochromulina_ericina_virus(100.0%)	1	NA	NA
WP_001217361.1|4517088_4518132_-	GMP reductase	NA	A0A0N9Q9A5	Chrysochromulina_ericina_virus	56.2	2.6e-102
>prophage 327
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4548441	4550013	4651105		Micromonas_sp._RCC1109_virus(100.0%)	1	NA	NA
WP_000082819.1|4548441_4550013_+	2-isopropylmalate synthase	NA	E5EQ69	Micromonas_sp._RCC1109_virus	26.1	6.9e-06
>prophage 328
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4558011	4558719	4651105		Bacillus_virus(100.0%)	1	NA	NA
WP_000915967.1|4558011_4558719_+	thiamine ABC transporter ATP-binding protein ThiQ	NA	G3M9Y6	Bacillus_virus	38.3	8.2e-23
>prophage 329
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4566429	4573869	4651105	transposase	Enterobacteria_phage(25.0%)	5	NA	NA
WP_072204682.1|4566429_4567638_-|transposase	IS200/IS605 family element transposase accessory protein TnpB	transposase	O80301	Enterobacteria_phage	88.0	2.1e-167
WP_031617948.1|4567657_4568098_+|transposase	IS200/IS605 family transposase	transposase	I4AZM1	Saccharomonospora_phage	53.6	2.1e-32
WP_001527484.1|4568163_4568394_+	hypothetical protein	NA	NA	NA	NA	NA
WP_015406126.1|4568437_4570789_+	DNA polymerase II	NA	B3GAM5	uncultured_virus	23.8	1.8e-21
WP_001116966.1|4570962_4573869_+	RNA polymerase-associated protein RapA	NA	A0A1B1IUI1	uncultured_Mediterranean_phage	37.1	2.9e-21
>prophage 330
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4581592	4583016	4651105		Enterococcus_phage(50.0%)	2	NA	NA
WP_000257211.1|4581592_4582441_+	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA	A0A0E3T919	Enterococcus_phage	47.8	5.8e-07
WP_000624379.1|4582536_4583016_-	type 3 dihydrofolate reductase	NA	A0A219UQN5	Bacillus_phage	47.1	2.3e-29
>prophage 331
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4586152	4588042	4651105		Catovirus(100.0%)	1	NA	NA
WP_058673735.1|4586152_4588042_-	sulfatase-like hydrolase/transferase	NA	A0A1V0SA98	Catovirus	24.7	5.0e-27
>prophage 332
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4595802	4601442	4651105		Vibrio_phage(50.0%)	4	NA	NA
WP_001527283.1|4595802_4597320_+	L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA	A0A2I7QNT1	Vibrio_phage	22.2	1.4e-08
WP_000347134.1|4597354_4598497_+	crotonobetainyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_001016212.1|4598608_4599826_+	L-carnitine CoA-transferase	NA	NA	NA	NA	NA
WP_001527592.1|4599888_4601442_+	crotonobetaine/carnitine-CoA ligase	NA	Q75ZG1	Hepacivirus	24.6	2.0e-29
>prophage 333
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4606978	4608127	4651105		Halovirus(100.0%)	1	NA	NA
WP_000597273.1|4606978_4608127_-	glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit	NA	R4TGJ8	Halovirus	32.8	4.4e-50
>prophage 334
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4619238	4622073	4651105	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_015406136.1|4619238_4622073_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A2K9L260	Tupanvirus	26.1	2.9e-79
>prophage 335
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4628576	4629743	4651105		uncultured_Caudovirales_phage(100.0%)	1	NA	NA
WP_000681340.1|4628576_4629743_-	Na+/H+ antiporter NhaA	NA	A0A2H4J5W3	uncultured_Caudovirales_phage	51.1	7.5e-90
>prophage 336
NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	4651105	4633000	4634494	4651105		Tetraselmis_virus(100.0%)	1	NA	NA
WP_000754364.1|4633000_4634494_-	sulfatase-like hydrolase/transferase	NA	A0A2P0VMN7	Tetraselmis_virus	29.3	1.5e-29
