assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006740725.1_ASM674072v1	NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	1	1695611-1695823	1,1,1	CRISPRCasFinder,PILER-CR,CRT	no		DEDDh,cas3,PD-DExK,WYL,csa3,DinG,cas2,cas1,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Orphan	TGTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCGCC,GTGTTCCCCGCGCCAGCGGGGATAAACCG	30,31,29	0	0	NA	NA	I-E:I-E:I-E	3,2,3	3	Orphan	DEDDh,cas3,PD-DExK,WYL,csa3,DinG,cas2,cas1,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	NA,NA	NA|447aa|up_9|NZ_CP038233.1_1679992_1681333_+	TIGR03247, glucar-dehydr, glucarate dehydratase	NA|381aa|up_8|NZ_CP038233.1_1681410_1682553_+	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism]	NA|919aa|up_7|NZ_CP038233.1_1682596_1685353_-	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional	NA|432aa|up_6|NZ_CP038233.1_1685410_1686706_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|752aa|up_5|NZ_CP038233.1_1686757_1689013_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|119aa|up_4|NZ_CP038233.1_1689075_1689432_+	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]	NA|267aa|up_3|NZ_CP038233.1_1690461_1691262_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_2|NZ_CP038233.1_1691489_1693127_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_1|NZ_CP038233.1_1693209_1694508_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_0|NZ_CP038233.1_1694643_1695315_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|down_0|NZ_CP038233.1_1695920_1696718_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|down_1|NZ_CP038233.1_1696807_1697170_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|down_2|NZ_CP038233.1_1697605_1699405_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|down_3|NZ_CP038233.1_1699404_1701117_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|down_4|NZ_CP038233.1_1701192_1701927_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|down_5|NZ_CP038233.1_1702014_1702968_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|303aa|down_6|NZ_CP038233.1_1707058_1707967_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_7|NZ_CP038233.1_1707976_1709416_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_8|NZ_CP038233.1_1709402_1710008_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_9|NZ_CP038233.1_1710025_1710382_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)
GCF_006740725.1_ASM674072v1	NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	2	1705354-1705748	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no		DEDDh,cas3,PD-DExK,WYL,csa3,DinG,cas2,cas1,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Orphan	GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG,GTGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	5,6,6	6	Orphan	DEDDh,cas3,PD-DExK,WYL,csa3,DinG,cas2,cas1,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	NA,NA	NA|267aa|up_9|NZ_CP038233.1_1690461_1691262_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_8|NZ_CP038233.1_1691489_1693127_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_7|NZ_CP038233.1_1693209_1694508_+	PRK00077, eno, enolase; Provisional	NA|224aa|up_6|NZ_CP038233.1_1694643_1695315_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|266aa|up_5|NZ_CP038233.1_1695920_1696718_+	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]	NA|121aa|up_4|NZ_CP038233.1_1696807_1697170_-	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS)	NA|600aa|up_3|NZ_CP038233.1_1697605_1699405_+	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit	NA|571aa|up_2|NZ_CP038233.1_1699404_1701117_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_1|NZ_CP038233.1_1701192_1701927_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	NA|318aa|up_0|NZ_CP038233.1_1702014_1702968_-	PRK15379, PRK15379, type III secretion system effector SopD	NA|303aa|down_0|NZ_CP038233.1_1707058_1707967_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|480aa|down_1|NZ_CP038233.1_1707976_1709416_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_2|NZ_CP038233.1_1709402_1710008_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|119aa|down_3|NZ_CP038233.1_1710025_1710382_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_4|NZ_CP038233.1_1710572_1710884_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_5|NZ_CP038233.1_1710902_1711613_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_6|NZ_CP038233.1_1711612_1712092_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_7|NZ_CP038233.1_1712088_1713138_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_8|NZ_CP038233.1_1713118_1713880_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional	NA|209aa|down_9|NZ_CP038233.1_1713873_1714500_+	PRK00312, pcm, protein-L-isoaspartate(D-aspartate) O-methyltransferase
GCF_006740725.1_ASM674072v1	NZ_CP038233	Salmonella enterica subsp. enterica serovar Javiana strain FARPER-220 chromosome, complete genome	3	4009933-4013988	3,3,3	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,cas5,cas7,cse2gr11,cas8e,cas3	DEDDh,cas3,PD-DExK,WYL,csa3,DinG,cas2,cas1,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	Type I-E	CGGTTTATCCCCGCTGACGCGGGGAACAC,CGGTTTATCCCCGCTGACGCGGGGAACACN,GTGTTCCCCGCGTCAGCGGGGATAAACCG	29,30,29	21	21	4010206-4010237|4010938-4010969|4011549-4011580|4011610-4011641|4011671-4011702|4011854-4011885|4011976-4012007|4012525-4012556|4012586-4012616|4012646-4012677|4012707-4012738|4012890-4012922|4013074-4013105|4013135-4013166|4012586-4012617|4012647-4012677|4012655-4012686|4012716-4012747|4012899-4012931|4013083-4013114|4013144-4013175	NZ_CP038233.1_4170857-4170826|NZ_CP038233.1_4178523-4178492|NZ_CP038233.1_4173496-4173465|NZ_CP038233.1_4170839-4170808|NZ_CP038233.1_4171373-4171404|NZ_CP038233.1_4169860-4169829|NZ_CP038233.1_4173238-4173269|NZ_CP038233.1_4172755-4172724|NZ_CP038233.1_4170166-4170136|NZ_CP038233.1_4171828-4171797|NZ_CP038233.1_4168889-4168858|NZ_CP038233.1_4177649-4177617|NZ_CP038233.1_4173136-4173105|NZ_CP038233.1_4169132-4169101|NZ_CP038233.1_4170166-4170135|NZ_CP038233.1_4171827-4171797|NZ_CP038233.1_4171828-4171797|NZ_CP038233.1_4168889-4168858|NZ_CP038233.1_4177649-4177617|NZ_CP038233.1_4173136-4173105|NZ_CP038233.1_4169132-4169101	I-E:I-E:I-E	66,66,45	66	TypeI-E	DEDDh,cas3,PD-DExK,WYL,csa3,DinG,cas2,cas1,cas5,cas7,cse2gr11,cas8e,c2c9_V-U4	NA|254aa|up_9|NZ_CP038233.1_3995820_3996582_+,NA|111aa|up_4|NZ_CP038233.1_4003267_4003600_+,NA|62aa|down_7|NZ_CP038233.1_4024554_4024740_+,NA|218aa|down_9|NZ_CP038233.1_4025781_4026435_-	NA|254aa|up_9|NZ_CP038233.1_3995820_3996582_+	NA	NA|65aa|up_8|NZ_CP038233.1_3997077_3997272_+	TIGR02999, Sig-70_X6, RNA polymerase sigma factor, TIGR02999 family	NA|209aa|up_7|NZ_CP038233.1_3997544_3998171_+	pfam11726, Inovirus_Gp2, Inovirus Gp2	NA|430aa|up_6|NZ_CP038233.1_4000818_4002108_-	COG3069, DcuC, C4-dicarboxylate transporter [Energy production and conversion]	NA|314aa|up_5|NZ_CP038233.1_4002244_4003186_+	PRK10341, PRK10341, transcriptional regulator TdcA	NA|111aa|up_4|NZ_CP038233.1_4003267_4003600_+	NA	NA|218aa|up_3|NZ_CP038233.1_4003966_4004620_-	pfam18739, HEPN_Apea, Apea-like HEPN	NA|413aa|up_2|NZ_CP038233.1_4005676_4006915_-	TIGR00891, Carboxylic_acid_transporter_protein_homolog, putative sialic acid transporter	NA|79aa|up_1|NZ_CP038233.1_4009059_4009296_-	PRK11415, PRK11415, hypothetical protein; Provisional	NA|55aa|up_0|NZ_CP038233.1_4009434_4009599_-	PRK10945, PRK10945, hemolysin expression modulator Hha	cas2|98aa|down_0|NZ_CP038233.1_4014084_4014378_-	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	cas1|307aa|down_1|NZ_CP038233.1_4014377_4015298_-	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas5|249aa|down_2|NZ_CP038233.1_4015925_4016672_-	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5	cas7|353aa|down_3|NZ_CP038233.1_4016682_4017741_-	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cse2gr11|183aa|down_4|NZ_CP038233.1_4017754_4018303_-	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas8e|519aa|down_5|NZ_CP038233.1_4018299_4019856_-	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1	cas3|887aa|down_6|NZ_CP038233.1_4020352_4023013_-	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms]	NA|62aa|down_7|NZ_CP038233.1_4024554_4024740_+	NA	NA|294aa|down_8|NZ_CP038233.1_4024903_4025785_-	PRK14845, PRK14845, translation initiation factor IF-2; Provisional	NA|218aa|down_9|NZ_CP038233.1_4025781_4026435_-	NA
