assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006740745.1_ASM674074v1	NZ_CP039546	Methylorubrum populi strain YC-XJ1 chromosome, complete genome	1	842803-842924	1	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,RT,Cas9_archaeal	Orphan	CCGGGCGGATTCGGCGGCGGCGG	23	0	0	NA	NA	NA	2	2	Orphan	DEDDh,csa3,WYL,cas3,RT,Cas9_archaeal	NA|500aa|up_9|NZ_CP039546.1_834683_836183_-,NA|64aa|up_2|NZ_CP039546.1_840090_840282_-,NA|91aa|up_1|NZ_CP039546.1_840278_840551_-,NA|292aa|up_0|NZ_CP039546.1_840709_841585_+,NA|224aa|down_2|NZ_CP039546.1_843924_844596_-	NA|500aa|up_9|NZ_CP039546.1_834683_836183_-	NA	NA|141aa|up_8|NZ_CP039546.1_836392_836815_+	PTZ00110, PTZ00110, helicase; Provisional	NA|86aa|up_7|NZ_CP039546.1_836918_837176_+	cd00291, SirA_YedF_YeeD, SirA, YedF, and YeeD	NA|189aa|up_6|NZ_CP039546.1_837205_837772_+	cd03424, ADPRase_NUDT5, ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate	NA|134aa|up_5|NZ_CP039546.1_838185_838587_+	pfam12616, DUF3775, Protein of unknown function (DUF3775)	NA|147aa|up_4|NZ_CP039546.1_838692_839133_-	cd04706, PLA2_plant, PLA2_plant: Plant-specific sub-family of  Phospholipase A2, a super-family of secretory and cytosolic enzymes; the latter are either Ca dependent or Ca independent	NA|250aa|up_3|NZ_CP039546.1_839281_840031_-	COG3637, COG3637, Opacity protein and related surface antigens [Cell envelope biogenesis, outer membrane]	NA|64aa|up_2|NZ_CP039546.1_840090_840282_-	NA	NA|91aa|up_1|NZ_CP039546.1_840278_840551_-	NA	NA|292aa|up_0|NZ_CP039546.1_840709_841585_+	NA	NA|231aa|down_0|NZ_CP039546.1_842961_843654_-	COG3577, COG3577, Predicted aspartyl protease [General function prediction only]	NA|71aa|down_1|NZ_CP039546.1_843650_843863_-	pfam06945, DUF1289, Protein of unknown function (DUF1289)	NA|224aa|down_2|NZ_CP039546.1_843924_844596_-	NA	NA|163aa|down_3|NZ_CP039546.1_844603_845092_-	pfam11663, Toxin_YhaV, Toxin with endonuclease activity, of toxin-antitoxin system	NA|134aa|down_4|NZ_CP039546.1_845088_845490_-	pfam15937, PrlF_antitoxin, prlF antitoxin for toxin YhaV_toxin	NA|276aa|down_5|NZ_CP039546.1_845528_846356_-	PRK00235, cobS, cobalamin synthase; Reviewed	NA|346aa|down_6|NZ_CP039546.1_846521_847559_+	PRK00105, cobT, nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Reviewed	NA|514aa|down_7|NZ_CP039546.1_847565_849107_-	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|152aa|down_8|NZ_CP039546.1_849438_849894_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|732aa|down_9|NZ_CP039546.1_849929_852125_+	COG1529, CoxL, Aerobic-type carbon monoxide dehydrogenase, large subunit CoxL/CutL homologs [Energy production and conversion]
GCF_006740745.1_ASM674074v1	NZ_CP039546	Methylorubrum populi strain YC-XJ1 chromosome, complete genome	2	3324874-3325007	2	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,RT,Cas9_archaeal	Orphan	CCCTCGGTCCCGCCGCGCTGGATCATCGTCCGCATGCCGGG	41	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,RT,Cas9_archaeal	NA|94aa|up_7|NZ_CP039546.1_3316582_3316864_+,NA	NA|554aa|up_9|NZ_CP039546.1_3312638_3314300_+	pfam02530, Porin_2, Porin subfamily	NA|679aa|up_8|NZ_CP039546.1_3314549_3316586_+	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|94aa|up_7|NZ_CP039546.1_3316582_3316864_+	NA	NA|428aa|up_6|NZ_CP039546.1_3316795_3318079_-	cd07302, CHD, cyclase homology domain	NA|201aa|up_5|NZ_CP039546.1_3318217_3318820_+	pfam13023, HD_3, HD domain	NA|775aa|up_4|NZ_CP039546.1_3318809_3321134_-	cd13401, Slt70-like, 70kDa soluble lytic transglycosylase (Slt70) and similar proteins	NA|297aa|up_3|NZ_CP039546.1_3321332_3322223_+	PRK03170, PRK03170, dihydrodipicolinate synthase; Provisional	NA|158aa|up_2|NZ_CP039546.1_3322294_3322768_+	PRK05422, smpB, SsrA-binding protein SmpB	NA|218aa|up_1|NZ_CP039546.1_3322916_3323570_-	cd10911, PIN_LabA, PIN domain of Synechococcus elongatus LabA (low-amplitude and bright) and related proteins	NA|197aa|up_0|NZ_CP039546.1_3324086_3324677_-	TIGR01367, Orotate_phosphoribosyltransferase, orotate phosphoribosyltransferase, Thermus family	NA|744aa|down_0|NZ_CP039546.1_3325240_3327472_-	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription]	NA|137aa|down_1|NZ_CP039546.1_3327724_3328135_-	PRK00392, rpoZ, DNA-directed RNA polymerase subunit omega; Reviewed	NA|189aa|down_2|NZ_CP039546.1_3328774_3329341_+	pfam08712, Nfu_N, Scaffold protein Nfu/NifU N terminal	NA|227aa|down_3|NZ_CP039546.1_3329517_3330198_+	TIGR03725, T6A_YeaZ, tRNA threonylcarbamoyl adenosine modification protein YeaZ	NA|174aa|down_4|NZ_CP039546.1_3330194_3330716_+	TIGR01575, rimI, ribosomal-protein-alanine acetyltransferase	NA|293aa|down_5|NZ_CP039546.1_3330741_3331620_+	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like	NA|147aa|down_6|NZ_CP039546.1_3331624_3332065_-	pfam08670, MEKHLA, MEKHLA domain	NA|447aa|down_7|NZ_CP039546.1_3332180_3333521_+	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|369aa|down_8|NZ_CP039546.1_3333557_3334664_+	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|162aa|down_9|NZ_CP039546.1_3334736_3335222_+	COG0319, COG0319, Predicted metal-dependent hydrolase [General function prediction only]
GCF_006740745.1_ASM674074v1	NZ_CP039546	Methylorubrum populi strain YC-XJ1 chromosome, complete genome	3	4176290-4176382	3	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,RT,Cas9_archaeal	Orphan	ACCGTGTCGTAGACCGGCGGCGTC	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,RT,Cas9_archaeal	NA|243aa|up_9|NZ_CP039546.1_4165723_4166452_+,NA|72aa|up_8|NZ_CP039546.1_4166550_4166766_+,NA|266aa|down_5|NZ_CP039546.1_4182655_4183453_+,NA|945aa|down_6|NZ_CP039546.1_4183647_4186482_+,NA|140aa|down_7|NZ_CP039546.1_4186550_4186970_+,NA|286aa|down_8|NZ_CP039546.1_4187169_4188027_+,NA|314aa|down_9|NZ_CP039546.1_4188034_4188976_+	NA|243aa|up_9|NZ_CP039546.1_4165723_4166452_+	NA	NA|72aa|up_8|NZ_CP039546.1_4166550_4166766_+	NA	NA|515aa|up_7|NZ_CP039546.1_4166915_4168460_+	PRK00286, xseA, exodeoxyribonuclease VII large subunit; Reviewed	NA|76aa|up_6|NZ_CP039546.1_4168588_4168816_+	pfam13773, DUF4170, Domain of unknown function (DUF4170)	NA|315aa|up_5|NZ_CP039546.1_4168984_4169929_+	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|219aa|up_4|NZ_CP039546.1_4169941_4170598_-	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|476aa|up_3|NZ_CP039546.1_4170594_4172022_-	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms]	NA|600aa|up_2|NZ_CP039546.1_4172248_4174048_+	cd10278, PQQ_MDH, Large subunit of methanol dehydrogenase (moxF)	NA|155aa|up_1|NZ_CP039546.1_4174357_4174822_-	PRK06342, PRK06342, transcription elongation factor GreA	NA|335aa|up_0|NZ_CP039546.1_4174836_4175841_-	cd08288, MDR_yhdh, Yhdh putative quinone oxidoreductases	NA|113aa|down_0|NZ_CP039546.1_4176998_4177337_+	pfam11953, DUF3470, Domain of unknown function (DUF3470)	NA|199aa|down_1|NZ_CP039546.1_4177845_4178442_+	COG1329, COG1329, Transcriptional regulators, similar to M	NA|291aa|down_2|NZ_CP039546.1_4178727_4179600_+	PRK07500, rpoH2, RNA polymerase factor sigma-32; Reviewed	NA|323aa|down_3|NZ_CP039546.1_4179761_4180730_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|101aa|down_4|NZ_CP039546.1_4182360_4182663_+	pfam12728, HTH_17, Helix-turn-helix domain	NA|266aa|down_5|NZ_CP039546.1_4182655_4183453_+	NA	NA|945aa|down_6|NZ_CP039546.1_4183647_4186482_+	NA	NA|140aa|down_7|NZ_CP039546.1_4186550_4186970_+	NA	NA|286aa|down_8|NZ_CP039546.1_4187169_4188027_+	NA	NA|314aa|down_9|NZ_CP039546.1_4188034_4188976_+	NA
GCF_006740745.1_ASM674074v1	NZ_CP039546	Methylorubrum populi strain YC-XJ1 chromosome, complete genome	4	4696248-4696330	4	CRISPRCasFinder	no		DEDDh,csa3,WYL,cas3,RT,Cas9_archaeal	Orphan	CCGCCGGGCCCCGCCCCGCCGGC	23	0	0	NA	NA	NA	1	1	Orphan	DEDDh,csa3,WYL,cas3,RT,Cas9_archaeal	NA|240aa|up_9|NZ_CP039546.1_4687820_4688540_-,NA|126aa|up_8|NZ_CP039546.1_4688707_4689085_+,NA|199aa|up_3|NZ_CP039546.1_4692747_4693344_-,NA|129aa|up_2|NZ_CP039546.1_4693340_4693727_-,NA|384aa|down_4|NZ_CP039546.1_4699482_4700634_+,NA|85aa|down_7|NZ_CP039546.1_4701745_4702000_+	NA|240aa|up_9|NZ_CP039546.1_4687820_4688540_-	NA	NA|126aa|up_8|NZ_CP039546.1_4688707_4689085_+	NA	NA|132aa|up_7|NZ_CP039546.1_4689097_4689493_-	cd16358, GlxI_Ni, Glyoxalase I that uses Ni(++) as cofactor	NA|368aa|up_6|NZ_CP039546.1_4689605_4690709_+	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed	NA|199aa|up_5|NZ_CP039546.1_4691021_4691618_-	pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch 1)	NA|329aa|up_4|NZ_CP039546.1_4691777_4692764_+	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family	NA|199aa|up_3|NZ_CP039546.1_4692747_4693344_-	NA	NA|129aa|up_2|NZ_CP039546.1_4693340_4693727_-	NA	NA|228aa|up_1|NZ_CP039546.1_4693838_4694522_+	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|276aa|up_0|NZ_CP039546.1_4694577_4695405_-	PRK08159, PRK08159, enoyl-[acyl-carrier-protein] reductase FabI	NA|184aa|down_0|NZ_CP039546.1_4696732_4697284_-	pfam16998, 17kDa_Anti_2, 17 kDa outer membrane surface antigen	NA|215aa|down_1|NZ_CP039546.1_4697370_4698015_+	PRK05679, PRK05679, pyridoxal 5'-phosphate synthase	NA|128aa|down_2|NZ_CP039546.1_4698030_4698414_-	cd17549, REC_DctD-like, phosphoacceptor receiver (REC) domain of C4-dicarboxylic acid transport protein D (DctD) and similar proteins	NA|241aa|down_3|NZ_CP039546.1_4698767_4699490_+	cd05233, SDR_c, classical (c) SDRs	NA|384aa|down_4|NZ_CP039546.1_4699482_4700634_+	NA	NA|160aa|down_5|NZ_CP039546.1_4700630_4701110_+	cd04673, Nudix_Hydrolase_15, Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X	NA|152aa|down_6|NZ_CP039546.1_4701106_4701562_+	pfam09539, DUF2385, Protein of unknown function (DUF2385)	NA|85aa|down_7|NZ_CP039546.1_4701745_4702000_+	NA	NA|447aa|down_8|NZ_CP039546.1_4702188_4703529_-	PRK09060, PRK09060, dihydroorotase; Validated	NA|286aa|down_9|NZ_CP039546.1_4703663_4704521_+	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only]
