The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_AP019698	Staphylococcus arlettae strain P2	2629900	1098681	1136756	2629900	tRNA	Staphylococcus_phage(88.89%)	36	NA	NA
WP_142019568.1|1098681_1099830_+	DegT/DnrJ/EryC1/StrS family aminotransferase	NA	A0A2D2W2B8	Stenotrophomonas_phage	25.2	8.1e-12
WP_103388009.1|1099929_1100556_-	AraC family transcriptional regulator	NA	NA	NA	NA	NA
WP_142019569.1|1102395_1103778_+	o-succinylbenzoate--CoA ligase	NA	A0A2H4PQM9	Staphylococcus_phage	59.1	9.0e-159
WP_103387794.1|1103795_1104791_+	o-succinylbenzoate synthase	NA	A0A2H4PQM0	Staphylococcus_phage	52.1	2.5e-94
WP_021459078.1|1104787_1105021_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	80.6	3.0e-30
WP_021459079.1|1105080_1105554_+	nucleoside triphosphatase YtkD	NA	A0A2H4PQM4	Staphylococcus_phage	55.4	3.6e-43
WP_002509985.1|1105540_1106335_+	S9 family peptidase	NA	A0A2H4PQM6	Staphylococcus_phage	67.8	2.4e-92
WP_002510562.1|1108047_1109643_-	phosphoenolpyruvate carboxykinase (ATP)	NA	A0A2H4PQN1	Staphylococcus_phage	80.6	1.3e-257
WP_002510563.1|1110016_1111213_+	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	85.1	3.8e-190
WP_002510564.1|1111305_1112214_+	NERD domain-containing protein	NA	A0A2H4PQQ8	Staphylococcus_phage	78.5	2.4e-107
WP_002510565.1|1112343_1113180_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	66.4	8.8e-109
WP_002510566.1|1113233_1113587_-	CrcB family protein	NA	NA	NA	NA	NA
WP_021459821.1|1113579_1113951_-	fluoride efflux transporter CrcB	NA	A0A2H4PQR0	Staphylococcus_phage	63.1	2.4e-34
WP_002510568.1|1114148_1114454_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002510569.1|1114734_1115448_+	transaldolase	NA	R9TM64	Synechococcus_phage	33.3	8.5e-20
WP_002510570.1|1115821_1116271_+	hypothetical protein	NA	A0A2H4PQT8	Staphylococcus_phage	45.3	1.4e-20
WP_002510571.1|1116278_1116713_-	competence protein ComK	NA	NA	NA	NA	NA
WP_037580146.1|1116728_1117199_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4PQT5	Staphylococcus_phage	44.1	1.6e-22
WP_002510573.1|1117411_1117636_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002510574.1|1117775_1118630_+	glucosaminidase domain-containing protein	NA	Q4ZE13	Staphylococcus_virus	38.9	6.6e-43
WP_002510575.1|1119192_1120116_-	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_021459818.1|1120289_1121765_+	FAD/NAD(P)-binding protein	NA	A0A2H4PQX2	Staphylococcus_phage	65.5	9.4e-13
WP_002510577.1|1122181_1123225_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	A0A2H4PQS8	Staphylococcus_phage	66.2	1.7e-130
WP_002510578.1|1123231_1123864_+	riboflavin synthase	NA	A0A2H4PQS5	Staphylococcus_phage	61.9	4.4e-68
WP_002510579.1|1123878_1125060_+	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	NA	A0A2H4PQS2	Staphylococcus_phage	71.2	1.0e-163
WP_002510580.1|1125072_1125537_+	6,7-dimethyl-8-ribityllumazine synthase	NA	A0A2H4PQS3	Staphylococcus_phage	75.3	4.6e-59
WP_142019570.1|1125746_1126781_-	proline dehydrogenase family protein	NA	A0A2H4PQT6	Staphylococcus_phage	69.2	7.5e-126
WP_002510582.1|1127041_1127866_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_142019571.1|1128041_1128992_+	L-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_002510584.1|1129154_1129556_+	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_002510585.1|1129596_1130157_-	methyltransferase domain-containing protein	NA	A0A2H4PQV0	Staphylococcus_phage	65.4	3.3e-67
WP_002510586.1|1130153_1131107_-	TIGR01212 family radical SAM protein	NA	A0A2H4PQV5	Staphylococcus_phage	84.8	1.6e-66
WP_142019572.1|1131215_1132394_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	71.9	3.8e-158
WP_142019573.1|1132696_1135114_+|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	84.0	0.0e+00
WP_002510589.1|1135135_1135447_+	rhodanese-like domain-containing protein	NA	A0A2H4PQR9	Staphylococcus_phage	66.0	4.5e-34
WP_002510590.1|1135496_1136756_-	NAD(P)/FAD-dependent oxidoreductase	NA	A0A2H4PQX1	Staphylococcus_phage	78.1	5.0e-39
>prophage 2
NZ_AP019698	Staphylococcus arlettae strain P2	2629900	1273198	1289419	2629900	tRNA	uncultured_Mediterranean_phage(44.44%)	12	NA	NA
WP_002510442.1|1273198_1274200_+	Holliday junction branch migration DNA helicase RuvB	NA	B3GAM6	uncultured_virus	29.1	4.9e-05
WP_142019611.1|1274202_1275228_+|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_002510444.1|1275247_1276387_+|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.6	6.0e-84
WP_002510445.1|1276403_1276664_+	preprotein translocase subunit YajC	NA	A0A1B1IVR5	uncultured_Mediterranean_phage	44.1	5.7e-06
WP_142019612.1|1276898_1279175_+	protein translocase subunit SecDF	NA	A0A1B1IVP7	uncultured_Mediterranean_phage	36.1	1.0e-29
WP_142019613.1|1279365_1281642_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	29.0	8.7e-66
WP_002510448.1|1281658_1282177_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	46.3	2.5e-29
WP_021459896.1|1282517_1284707_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	A0A1B1IUF0	uncultured_Mediterranean_phage	38.0	4.1e-12
WP_103387844.1|1284720_1285173_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_002510451.1|1285169_1286045_+	N-acetylmuramoyl-L-alanine amidase	NA	A0A067ZJB6	Vibrio_phage	31.7	7.8e-15
WP_112369439.1|1286377_1287646_+|tRNA	histidine--tRNA ligase	tRNA	NA	NA	NA	NA
WP_002510453.1|1287652_1289419_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9L3L6	Tupanvirus	32.2	1.5e-04
>prophage 3
NZ_AP019698	Staphylococcus arlettae strain P2	2629900	1832222	1840691	2629900		Prochlorococcus_phage(33.33%)	9	NA	NA
WP_002510860.1|1832222_1832789_-	phosphoribosylglycinamide formyltransferase	NA	M4QRX9	Synechococcus_phage	38.2	6.8e-28
WP_002510861.1|1832785_1833820_-	phosphoribosylformylglycinamidine cyclo-ligase	NA	Q58MH8	Prochlorococcus_phage	43.9	4.8e-64
WP_142019725.1|1833812_1835300_-	amidophosphoribosyltransferase	NA	A0A0M3SGR2	Mollivirus	31.3	5.7e-42
WP_002510863.1|1835278_1837468_-	phosphoribosylformylglycinamidine synthase subunit PurL	NA	A6N228	Microbacterium_phage	38.4	4.0e-137
WP_021459050.1|1837460_1838132_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA	NA
WP_002510865.1|1838131_1838392_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA	NA
WP_002510866.1|1838393_1839095_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	NA	E3SPA9	Prochlorococcus_phage	42.5	3.1e-46
WP_142019726.1|1839094_1840222_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA	NA
WP_002510868.1|1840208_1840691_-	5-(carboxyamino)imidazole ribonucleotide mutase	NA	A0A2P0VNU7	Tetraselmis_virus	44.0	3.1e-21
>prophage 4
NZ_AP019698	Staphylococcus arlettae strain P2	2629900	2026753	2051104	2629900	terminase,head,integrase	Staphylococcus_phage(52.17%)	32	2044544:2044560	2050398:2050414
WP_142019783.1|2026753_2027347_+	hypothetical protein	NA	A0A1D6Z277	Staphylococcus_phage	68.4	1.4e-12
WP_142019784.1|2028685_2029084_-	DUF1722 domain-containing protein	NA	NA	NA	NA	NA
WP_142019785.1|2029111_2029303_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	85.0	1.4e-25
WP_142019786.1|2029446_2030658_-	Fic family protein	NA	Q9AZ49	Lactococcus_phage	28.0	1.5e-37
WP_172604825.1|2030875_2031019_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142019787.1|2031104_2031446_-	sigma-70 family RNA polymerase sigma factor	NA	A0A2H4JEH8	uncultured_Caudovirales_phage	45.6	1.5e-19
WP_142020101.1|2031442_2031721_-	hypothetical protein	NA	A0A2H4JEA5	uncultured_Caudovirales_phage	46.7	1.5e-17
WP_002455574.1|2032414_2032975_+	TIGR00730 family Rossman fold protein	NA	NA	NA	NA	NA
WP_037554456.1|2033149_2033467_-|head	phage head closure protein	head	A0A2I7SC03	Paenibacillus_phage	41.1	1.2e-10
WP_037554460.1|2034087_2034609_+	hypothetical protein	NA	A0A0H3U494	Staphylococcus_phage	83.2	1.0e-83
WP_002455577.1|2034601_2035105_+	hypothetical protein	NA	A0A0H3U2S7	Staphylococcus_phage	67.7	1.1e-26
WP_002455578.1|2035287_2035776_+	ATP-binding protein	NA	A0A2H4JFX6	uncultured_Caudovirales_phage	100.0	3.2e-87
WP_002455579.1|2035804_2036215_-	YolD-like family protein	NA	U3PG23	Staphylococcus_phage	91.2	3.7e-68
WP_002455580.1|2036224_2036416_-	hypothetical protein	NA	U3PCX8	Staphylococcus_phage	100.0	2.9e-31
WP_002455582.1|2036891_2037227_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002455583.1|2037223_2037550_-	hypothetical protein	NA	A0A2H4JEA5	uncultured_Caudovirales_phage	47.6	1.4e-22
WP_002455584.1|2037546_2038083_-	hypothetical protein	NA	A0A2H4JB26	uncultured_Caudovirales_phage	50.8	5.4e-43
WP_002455585.1|2038108_2038582_-|terminase	phage terminase small subunit P27 family	terminase	A0A2H4JB21	uncultured_Caudovirales_phage	68.8	1.7e-53
WP_142019788.1|2039747_2040221_-	hypothetical protein	NA	A0A1W6JPF7	Staphylococcus_phage	39.5	6.0e-30
WP_002455587.1|2040236_2040854_-	hypothetical protein	NA	A0A1W6JPC6	Staphylococcus_phage	53.7	6.6e-53
WP_037554559.1|2041157_2041451_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142019789.1|2041969_2043490_-	nucleoside triphosphatase	NA	A0A1P8BMT9	Lactococcus_phage	44.6	9.1e-104
WP_142019790.1|2043502_2044387_-	primase C-terminal domain-containing protein	NA	A0A1W6JQL5	Staphylococcus_phage	51.7	9.7e-82
WP_142019791.1|2044485_2044785_-	DUF1474 family protein	NA	A0A1W6JPG5	Staphylococcus_phage	79.8	5.5e-37
2044544:2044560	attL	TCTTCTAACACTTTATC	NA	NA	NA	NA
WP_142019792.1|2044797_2045229_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142019793.1|2045230_2045410_-	hypothetical protein	NA	NA	NA	NA	NA
WP_142019794.1|2045426_2045645_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_037554465.1|2045644_2045866_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_142019795.1|2045959_2046544_+	helix-turn-helix domain-containing protein	NA	A0A1W6JPB6	Staphylococcus_phage	26.6	5.0e-10
WP_142019796.1|2046553_2047660_+|integrase	tyrosine-type recombinase/integrase	integrase	H0UST3	Bacillus_phage	42.7	3.2e-74
WP_002510524.1|2048229_2048694_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	92.9	7.9e-75
WP_002510525.1|2048716_2051104_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.4	6.2e-91
2050398:2050414	attR	TCTTCTAACACTTTATC	NA	NA	NA	NA
>prophage 5
NZ_AP019698	Staphylococcus arlettae strain P2	2629900	2108595	2126811	2629900		uncultured_Caudovirales_phage(33.33%)	14	NA	NA
WP_002509864.1|2108595_2109564_-	ABC transporter permease	NA	A0A2H4IY97	uncultured_Caudovirales_phage	77.6	2.0e-136
WP_142019804.1|2110028_2110997_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A2H4J4P3	uncultured_Caudovirales_phage	91.0	7.2e-171
WP_002508884.1|2111103_2113209_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A0A2H4J2N6	uncultured_Caudovirales_phage	91.4	0.0e+00
WP_002508885.1|2113171_2113570_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	NA	A0A2H4J545	uncultured_Caudovirales_phage	72.7	3.1e-51
WP_142019805.1|2114247_2115138_+	EamA family transporter	NA	NA	NA	NA	NA
WP_002508887.1|2115162_2115663_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	NA	E7DN65	Pneumococcus_phage	72.3	5.4e-53
WP_002508888.1|2115944_2117459_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	36.8	9.2e-72
WP_021459144.1|2117842_2119345_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.6	1.2e-66
WP_002508890.1|2119483_2120422_+	diacylglycerol kinase family lipid kinase	NA	A0A1V0SBJ0	Catovirus	25.8	4.0e-09
WP_002508891.1|2120471_2121008_-	5'-3'-deoxyribonucleotidase	NA	A0A0A0PKY7	Bacillus_phage	36.6	2.7e-26
WP_002508892.1|2121088_2122144_-	histidinol-phosphate transaminase	NA	A0A142C026	Faustovirus	24.0	3.4e-17
WP_142019806.1|2122332_2123847_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_142019807.1|2123843_2124800_-	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	35.2	2.1e-29
WP_002508895.1|2125032_2126811_-	DNA helicase RecQ	NA	M1PGQ0	Moumouvirus	37.9	1.7e-77
