The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP021398	Bordetella hinzii strain 14-3425 chromosome, complete genome	4885078	528233	585644	4885078	terminase,head,integrase,transposase,tRNA	Aeromonas_phage(21.05%)	71	542293:542310	592190:592207
WP_032954962.1|528233_529346_+|tRNA	tRNA 2-selenouridine(34) synthase MnmH	tRNA	NA	NA	NA	NA
WP_029579130.1|529342_530116_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_029579129.1|530280_530754_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_029579128.1|530765_531200_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_032954961.1|531258_532245_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_029579126.1|532253_533507_+	CoA transferase	NA	NA	NA	NA	NA
WP_029579125.1|533519_533888_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029579124.1|533884_535042_+	thiolase	NA	NA	NA	NA	NA
WP_029579123.1|535198_535708_+	MaoC family dehydratase	NA	NA	NA	NA	NA
WP_032954960.1|535738_536719_+	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA	NA
WP_032954959.1|536676_538152_+	MmgE/PrpD family protein	NA	NA	NA	NA	NA
WP_029579119.1|538148_539321_+	acyl-CoA dehydrogenase	NA	NA	NA	NA	NA
WP_032960887.1|539317_540538_+	CoA transferase	NA	NA	NA	NA	NA
WP_029579117.1|540534_541332_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_032960884.1|541335_542145_+	CoA ester lyase	NA	NA	NA	NA	NA
542293:542310	attL	CGACGGCGAGACTCGAAC	NA	NA	NA	NA
WP_141984717.1|543712_544765_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032960881.1|545414_545720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984461.1|545845_546349_+	hypothetical protein	NA	NA	NA	NA	NA
WP_032960875.1|546612_547359_-	hypothetical protein	NA	A0A0F6TK45	Escherichia_coli_O157_typing_phage	47.7	1.6e-56
WP_032960872.1|547561_548860_-|integrase	integrase arm-type DNA-binding domain-containing protein	integrase	A0A0R6PH06	Moraxella_phage	30.9	3.2e-41
WP_141984463.1|549261_549789_-	hypothetical protein	NA	A0A2I7R2S9	Vibrio_phage	35.3	1.3e-20
WP_141984718.1|549785_550280_-	hypothetical protein	NA	Q775E1	Bordetella_phage	68.7	2.5e-63
WP_141984719.1|550276_550621_-	hypothetical protein	NA	NA	NA	NA	NA
WP_051621492.1|550708_551170_-	hypothetical protein	NA	B0VK51	Azospirillum_phage	49.3	1.3e-13
WP_141984720.1|551188_551968_-	hypothetical protein	NA	Q8HAM8	Burkholderia_phage	41.8	7.4e-17
WP_141984989.1|551957_552710_-	DUF2612 domain-containing protein	NA	A0A219YBB5	Aeromonas_phage	50.9	2.1e-45
WP_141984721.1|553468_554677_-	hypothetical protein	NA	A0A2R3UAL9	Myoviridae_environmental_samples	49.0	2.8e-100
WP_032970921.1|554684_555035_-	hypothetical protein	NA	A0A2R3UAP1	Myoviridae_environmental_samples	40.4	3.7e-16
WP_141984722.1|555036_555411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984543.1|555499_556739_+|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	78.8	7.1e-131
WP_141984723.1|556630_557167_-	hypothetical protein	NA	H9C0W9	Aeromonas_phage	39.1	1.2e-13
WP_141984990.1|557168_557321_-	transcription elongation factor GreA	NA	NA	NA	NA	NA
WP_141984724.1|557335_557773_-	hypothetical protein	NA	H9C0W7	Aeromonas_phage	45.6	7.8e-16
WP_141984725.1|557774_558206_-	hypothetical protein	NA	Q2NPD1	Xanthomonas_phage	40.5	2.2e-18
WP_141984726.1|558267_558900_-	HNH endonuclease	NA	A0A2I7QQE8	Vibrio_phage	46.5	2.0e-12
WP_141984727.1|559007_560486_-	DUF3383 family protein	NA	H9C0W5	Aeromonas_phage	40.3	7.3e-90
WP_141984728.1|560490_561024_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984729.1|561020_561398_-	hypothetical protein	NA	A0A077KAW7	Edwardsiella_phage	43.8	7.4e-23
WP_051621495.1|561394_561847_-	hypothetical protein	NA	A0A077KC03	Edwardsiella_phage	51.6	7.8e-27
WP_141984730.1|561834_562266_-	DUF4054 domain-containing protein	NA	H9C0W0	Aeromonas_phage	50.4	2.7e-21
WP_032970943.1|562275_562614_-	hypothetical protein	NA	A0A1X9SFA9	Acinetobacter_phage	36.5	5.5e-09
WP_141984731.1|562679_563705_-	DUF2184 domain-containing protein	NA	Q8HAP7	Burkholderia_phage	48.0	1.5e-81
WP_032970948.1|563709_564195_-	hypothetical protein	NA	A0A219YBF2	Aeromonas_phage	55.1	4.0e-37
WP_141984732.1|564195_565578_-	DUF2213 domain-containing protein	NA	A0A219YCD3	Aeromonas_phage	39.2	6.0e-70
WP_141984991.1|565574_566267_-|head	phage head morphogenesis protein	head	H9C0V1	Aeromonas_phage	49.1	3.2e-56
WP_141984733.1|566370_567921_-	DUF1073 domain-containing protein	NA	A0A2R3UAL5	Myoviridae_environmental_samples	44.5	1.9e-101
WP_141984734.1|567917_569408_-|terminase	phage terminase large subunit	terminase	J7I460	Acinetobacter_phage	38.1	2.5e-69
WP_141984735.1|569367_569955_-|terminase	terminase small subunit	terminase	U5PZD3	Bacillus_phage	38.5	7.0e-28
WP_141984736.1|569908_570478_-	hypothetical protein	NA	H9YT15	environmental_Halophage	40.7	7.8e-24
WP_141984737.1|570648_570951_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984738.1|570947_571304_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984739.1|571321_571735_-|transposase	transposase family protein	transposase	NA	NA	NA	NA
WP_032970963.1|571846_572176_-	DUF1064 domain-containing protein	NA	A0A0R6PI24	Moraxella_phage	50.0	9.7e-19
WP_141984740.1|572175_573567_-	replicative DNA helicase	NA	A0A077SK18	Escherichia_phage	45.6	1.1e-98
WP_141984741.1|573563_574385_-	hypothetical protein	NA	A0A2I7RQ47	Vibrio_phage	34.6	2.1e-09
WP_141984742.1|574405_575086_-	hypothetical protein	NA	A0A067YXB7	Escherichia_phage	37.1	4.3e-13
WP_141984992.1|574979_575405_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032970967.1|575437_575848_-	NinB phage protein	NA	Q8VNP6	Enterobacteria_phage	45.3	1.4e-19
WP_032970969.1|575847_576162_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_080700198.1|576613_576829_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984743.1|577435_578470_+	helix-turn-helix domain-containing protein	NA	A0A0R6PJ00	Moraxella_phage	45.0	1.7e-08
WP_141984744.1|578564_579578_-	hypothetical protein	NA	A0A0M4S6X1	Salmonella_phage	45.9	2.8e-77
WP_141984745.1|579733_580816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984746.1|581289_581760_+	hypothetical protein	NA	A0A2H4J6F5	uncultured_Caudovirales_phage	39.7	1.4e-23
WP_032961328.1|581775_581985_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141984747.1|581986_582382_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141984748.1|582473_582797_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141984749.1|582793_583135_+	hypothetical protein	NA	NA	NA	NA	NA
WP_048940006.1|583306_584164_+	exonuclease VIII	NA	A0A193GYP4	Enterobacter_phage	46.7	3.9e-35
WP_141984750.1|584160_584637_+	HNH endonuclease	NA	C4ML56	Xanthomonas_virus	43.9	6.9e-26
WP_141984751.1|584639_585644_+	recombination protein RecT	NA	Q858E1	Salmonella_phage	51.3	3.6e-56
592190:592207	attR	CGACGGCGAGACTCGAAC	NA	NA	NA	NA
>prophage 2
NZ_CP021398	Bordetella hinzii strain 14-3425 chromosome, complete genome	4885078	736451	744776	4885078		Rhodoferax_phage(14.29%)	11	NA	NA
WP_141984777.1|736451_738650_-	hypothetical protein	NA	A0A0E3GMB1	Rhodoferax_phage	32.7	8.3e-82
WP_080701623.1|738652_739942_-	hypothetical protein	NA	S5VY04	Leptospira_phage	37.4	2.5e-30
WP_032961358.1|740001_740331_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984778.1|740475_740688_-	hypothetical protein	NA	S4TRB9	Salmonella_phage	61.5	2.4e-10
WP_141984779.1|741335_741677_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984780.1|741654_742047_-	RusA family crossover junction endodeoxyribonuclease	NA	K7PKN5	Enterobacterial_phage	46.0	1.7e-22
WP_141984781.1|742046_742748_-	hypothetical protein	NA	F8TUP9	EBPR_podovirus	42.2	7.6e-29
WP_141984782.1|742710_743511_-	hypothetical protein	NA	A0A127KNX8	Pseudomonas_phage	54.7	6.2e-27
WP_141984783.1|743513_743870_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984784.1|743866_744226_-	recombinase	NA	NA	NA	NA	NA
WP_141984785.1|744359_744776_-	recombination protein NinB	NA	K7P6I8	Enterobacteria_phage	37.8	2.2e-15
>prophage 3
NZ_CP021398	Bordetella hinzii strain 14-3425 chromosome, complete genome	4885078	752828	760170	4885078	integrase	Synechococcus_phage(16.67%)	11	757124:757139	764603:764618
WP_080700246.1|752828_753167_+	HNH endonuclease	NA	H2BCQ8	Synechococcus_phage	43.0	2.1e-08
WP_141984796.1|753163_753670_+	siphovirus Gp157 family protein	NA	H2BDF7	Pseudomonas_virus	38.4	7.4e-18
WP_141984797.1|754381_754843_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141984798.1|754839_755856_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141984799.1|755852_756518_+	hypothetical protein	NA	F8TVI9	EBPR_siphovirus	46.1	5.0e-06
WP_043223539.1|756514_756772_+	hypothetical protein	NA	NA	NA	NA	NA
WP_029580409.1|756774_757056_+	hypothetical protein	NA	K4JS57	Caulobacter_phage	33.3	6.3e-11
WP_141984800.1|757059_758220_+	hypothetical protein	NA	NA	NA	NA	NA
757124:757139	attL	GCCAGGCGCACAGCAT	NA	NA	NA	NA
WP_141984993.1|758357_758867_+	HD domain-containing protein	NA	A0A1X9SH80	Bradyrhizobium_phage	38.4	2.5e-21
WP_141984801.1|759028_759346_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_141984802.1|759183_760170_+|integrase	tyrosine-type recombinase/integrase	integrase	A0A221SAN4	Ralstonia_phage	33.6	6.5e-10
764603:764618	attR	GCCAGGCGCACAGCAT	NA	NA	NA	NA
>prophage 4
NZ_CP021398	Bordetella hinzii strain 14-3425 chromosome, complete genome	4885078	4530669	4570238	4885078	integrase,transposase,holin	Streptococcus_phage(18.18%)	33	4529609:4529625	4574859:4574875
4529609:4529625	attL	CATCAAGGCGCTGGGCG	NA	NA	NA	NA
WP_032955724.1|4530669_4532883_+|holin	phospholipase C, phosphocholine-specific	holin	NA	NA	NA	NA
WP_032955726.1|4533006_4533780_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_032962772.1|4533810_4534968_-	iron-containing alcohol dehydrogenase	NA	NA	NA	NA	NA
WP_029580606.1|4534977_4536420_-	aldehyde dehydrogenase family protein	NA	NA	NA	NA	NA
WP_029580605.1|4536451_4537168_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	24.1	6.8e-09
WP_032962771.1|4537167_4538928_-	branched-chain amino acid ABC transporter ATP-binding protein/permease	NA	A0A2R8FG22	Brazilian_cedratvirus	29.0	1.4e-10
WP_032962770.1|4538924_4539833_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_032962769.1|4539843_4541025_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_029580601.1|4541081_4541417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032962824.1|4541413_4542751_-	DUF1446 domain-containing protein	NA	NA	NA	NA	NA
WP_029580599.1|4542852_4543755_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_032962768.1|4543835_4545296_+	DNA-3-methyladenine glycosylase 2 family protein	NA	A0A291LAM3	Bordetella_phage	33.3	5.5e-05
WP_032962767.1|4545306_4545846_+	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	M1PFU9	Streptococcus_phage	48.5	3.6e-31
WP_032962099.1|4546326_4546593_+|transposase	transposase	transposase	NA	NA	NA	NA
WP_141984583.1|4546445_4547117_+|transposase	IS3 family transposase	transposase	NA	NA	NA	NA
WP_141984584.1|4548288_4548618_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032964304.1|4548648_4548858_-	hypothetical protein	NA	NA	NA	NA	NA
WP_032964301.1|4548918_4550967_-	ParB N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_032964299.1|4551046_4551871_-	DUF945 domain-containing protein	NA	K4F5L3	Cronobacter_phage	40.3	1.2e-41
WP_080701660.1|4552423_4553023_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141984543.1|4554217_4555458_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	78.8	7.1e-131
WP_141984956.1|4557564_4557981_-	DNA mismatch endonuclease Vsr	NA	I6NSG0	Burkholderia_phage	55.1	4.8e-39
WP_141984957.1|4558167_4559070_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984958.1|4559069_4560302_-	DNA (cytosine-5-)-methyltransferase	NA	M1PSQ0	Streptococcus_phage	32.6	8.0e-50
WP_141984959.1|4560298_4560517_-	hypothetical protein	NA	NA	NA	NA	NA
WP_141984960.1|4560979_4561261_+	XRE family transcriptional regulator	NA	A0A2D1GR59	Pseudomonas_phage	48.4	7.2e-15
WP_141984543.1|4562947_4564188_-|transposase	IS3 family transposase	transposase	Q8W6R2	Burkholderia_virus	78.8	7.1e-131
WP_141984961.1|4564284_4565766_+	P-type conjugative transfer protein TrbL	NA	NA	NA	NA	NA
WP_141984962.1|4565771_4566089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_141984963.1|4566596_4567619_-	plasmid replication	NA	NA	NA	NA	NA
WP_141984964.1|4567599_4568499_-	AAA family ATPase	NA	NA	NA	NA	NA
WP_141985012.1|4568502_4568676_-	AlpA family phage regulatory protein	NA	NA	NA	NA	NA
WP_141984965.1|4569029_4570238_-|integrase	tyrosine-type recombinase/integrase	integrase	T1S9J3	Salmonella_phage	54.5	1.1e-120
4574859:4574875	attR	CATCAAGGCGCTGGGCG	NA	NA	NA	NA
>prophage 5
NZ_CP021398	Bordetella hinzii strain 14-3425 chromosome, complete genome	4885078	4633366	4641116	4885078	protease	uncultured_Caudovirales_phage(16.67%)	7	NA	NA
WP_029580525.1|4633366_4634020_+	transcriptional repressor LexA	NA	A0A2H4JG58	uncultured_Caudovirales_phage	50.7	1.9e-10
WP_029580524.1|4634146_4636576_-	endopeptidase La	NA	A0A0R6PGP8	Moraxella_phage	52.4	2.0e-222
WP_032964410.1|4636741_4638040_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	54.3	1.1e-129
WP_029580522.1|4638144_4638798_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	56.4	1.5e-55
WP_029580521.1|4638800_4640111_-	trigger factor	NA	NA	NA	NA	NA
WP_029580520.1|4640316_4640856_+	TIGR00645 family protein	NA	K4K6D8	Caulobacter_phage	33.7	1.1e-22
WP_029580519.1|4640909_4641116_-	cold-shock protein	NA	A0A2H4N7Y6	Lake_Baikal_phage	62.1	7.4e-17
