assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_006970285.1_ASM697028v1	NZ_CP031288	Mycoplasma capricolum subsp. capripneumoniae strain JF6042 chromosome, complete genome	1	249339-249447	1	CRISPRCasFinder	no		DEDDh	Orphan	AAGGAATTTCTGTGTATTTACACACTTTTTCCTTA	35	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|229aa|up_8|NZ_CP031288.1_220929_221616_+,NA|175aa|up_4|NZ_CP031288.1_232674_233199_+,NA|122aa|down_3|NZ_CP031288.1_254366_254732_-,NA|65aa|down_4|NZ_CP031288.1_254915_255110_-,NA|146aa|down_5|NZ_CP031288.1_255306_255744_-,NA|104aa|down_6|NZ_CP031288.1_256041_256353_-,NA|127aa|down_7|NZ_CP031288.1_257033_257414_+,NA|383aa|down_8|NZ_CP031288.1_257376_258525_-,NA|289aa|down_9|NZ_CP031288.1_259066_259933_-	NA|1028aa|up_9|NZ_CP031288.1_217166_220250_+	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold	NA|229aa|up_8|NZ_CP031288.1_220929_221616_+	NA	NA|294aa|up_7|NZ_CP031288.1_223502_224384_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|547aa|up_6|NZ_CP031288.1_224417_226058_-	TIGR03490, Uncharacterized_lipoprotein_lpp, mycoides cluster lipoprotein, LppA/P72 family	NA|600aa|up_5|NZ_CP031288.1_226795_228595_-	cd11338, AmyAc_CMD, Alpha amylase catalytic domain found in cyclomaltodextrinases and related proteins	NA|175aa|up_4|NZ_CP031288.1_232674_233199_+	NA	NA|598aa|up_3|NZ_CP031288.1_244069_245863_-	TIGR00181, Oligoendopeptidase_F_homolog, oligoendopeptidase F	NA|228aa|up_2|NZ_CP031288.1_245862_246546_-	cd17495, RMtype1_S_Cep9333ORF4827P-TRD2-CR2_like, Type I restriction-modification system specificity (S) subunit Target Recognition Domain-ConseRved domain (TRD-CR), similar to Crinalium epipsammum S subunit (S	NA|452aa|up_1|NZ_CP031288.1_246562_247918_-	pfam00883, Peptidase_M17, Cytosol aminopeptidase family, catalytic domain	NA|434aa|up_0|NZ_CP031288.1_248033_249335_-	COG1373, COG1373, Predicted ATPase (AAA+ superfamily) [General function prediction only]	NA|207aa|down_0|NZ_CP031288.1_249571_250192_+	COG2059, ChrA, Chromate transport protein ChrA [Inorganic ion transport and metabolism]	NA|226aa|down_1|NZ_CP031288.1_250191_250869_+	pfam02417, Chromate_transp, Chromate transporter	NA|127aa|down_2|NZ_CP031288.1_251136_251517_+	pfam07751, Abi_2, Abi-like protein	NA|122aa|down_3|NZ_CP031288.1_254366_254732_-	NA	NA|65aa|down_4|NZ_CP031288.1_254915_255110_-	NA	NA|146aa|down_5|NZ_CP031288.1_255306_255744_-	NA	NA|104aa|down_6|NZ_CP031288.1_256041_256353_-	NA	NA|127aa|down_7|NZ_CP031288.1_257033_257414_+	NA	NA|383aa|down_8|NZ_CP031288.1_257376_258525_-	NA	NA|289aa|down_9|NZ_CP031288.1_259066_259933_-	NA
GCF_006970285.1_ASM697028v1	NZ_CP031288	Mycoplasma capricolum subsp. capripneumoniae strain JF6042 chromosome, complete genome	2	358444-358630	1	PILER-CR	no		DEDDh	Orphan	ACCAACCCATTGGTAACTGAGATACTTCAAATGTAACTGATATGCGTTGTAT	52	1	1	358496-358518	NZ_CP031288.1_436803-436825	NA	2	2	Orphan	DEDDh	NA|46aa|up_8|NZ_CP031288.1_352235_352373_+,NA|216aa|up_7|NZ_CP031288.1_352390_353038_+,NA|202aa|up_5|NZ_CP031288.1_353525_354131_+,NA|86aa|up_4|NZ_CP031288.1_354558_354816_+,NA|71aa|up_2|NZ_CP031288.1_355877_356090_+,NA|64aa|up_1|NZ_CP031288.1_357620_357812_+,NA|94aa|up_0|NZ_CP031288.1_357901_358183_+,NA|62aa|down_0|NZ_CP031288.1_359908_360094_+,NA|204aa|down_1|NZ_CP031288.1_361160_361772_+,NA|138aa|down_2|NZ_CP031288.1_361822_362236_+,NA|126aa|down_8|NZ_CP031288.1_366919_367297_+,NA|182aa|down_9|NZ_CP031288.1_367375_367921_+	NA|151aa|up_9|NZ_CP031288.1_351734_352187_+	cd04496, SSB_OBF, SSB_OBF: A subfamily of OB folds similar to the OB fold of ssDNA-binding protein (SSB)	NA|46aa|up_8|NZ_CP031288.1_352235_352373_+	NA	NA|216aa|up_7|NZ_CP031288.1_352390_353038_+	NA	NA|128aa|up_6|NZ_CP031288.1_353063_353447_+	pfam01719, Rep_2, Plasmid replication protein	NA|202aa|up_5|NZ_CP031288.1_353525_354131_+	NA	NA|86aa|up_4|NZ_CP031288.1_354558_354816_+	NA	NA|246aa|up_3|NZ_CP031288.1_355140_355878_+	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|71aa|up_2|NZ_CP031288.1_355877_356090_+	NA	NA|64aa|up_1|NZ_CP031288.1_357620_357812_+	NA	NA|94aa|up_0|NZ_CP031288.1_357901_358183_+	NA	NA|62aa|down_0|NZ_CP031288.1_359908_360094_+	NA	NA|204aa|down_1|NZ_CP031288.1_361160_361772_+	NA	NA|138aa|down_2|NZ_CP031288.1_361822_362236_+	NA	NA|183aa|down_3|NZ_CP031288.1_362803_363352_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|272aa|down_4|NZ_CP031288.1_363405_364221_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|268aa|down_5|NZ_CP031288.1_364275_365079_+	TIGR00635, Holliday_junction_ATP-dependent_DNA_helicase_RuvB, Holliday junction DNA helicase, RuvB subunit	NA|223aa|down_6|NZ_CP031288.1_365079_365748_+	pfam02086, MethyltransfD12, D12 class N6 adenine-specific DNA methyltransferase	NA|157aa|down_7|NZ_CP031288.1_366237_366708_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|126aa|down_8|NZ_CP031288.1_366919_367297_+	NA	NA|182aa|down_9|NZ_CP031288.1_367375_367921_+	NA
GCF_006970285.1_ASM697028v1	NZ_CP031288	Mycoplasma capricolum subsp. capripneumoniae strain JF6042 chromosome, complete genome	3	747606-747746	2	CRISPRCasFinder	no		DEDDh	Orphan	GGTTGTGGTAGATTAGTGGTAGAAATATGGTAGATTAGAATATAAA	46	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|478aa|up_5|NZ_CP031288.1_737626_739060_-,NA|190aa|up_2|NZ_CP031288.1_741583_742153_-,NA|155aa|up_1|NZ_CP031288.1_742371_742836_-,NA|318aa|down_2|NZ_CP031288.1_753505_754459_+	NA|431aa|up_9|NZ_CP031288.1_729161_730454_-	cd17933, DEXSc_RecD-like, DEXS-box helicase domain of RecD and similar proteins	NA|282aa|up_8|NZ_CP031288.1_732912_733758_-	cd00947, TBP_aldolase_IIB, Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases	NA|245aa|up_7|NZ_CP031288.1_733961_734696_+	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism]	NA|314aa|up_6|NZ_CP031288.1_736604_737546_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|478aa|up_5|NZ_CP031288.1_737626_739060_-	NA	NA|316aa|up_4|NZ_CP031288.1_740126_741074_-	COG0507, RecD, ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member [DNA replication, recombination, and repair]	NA|178aa|up_3|NZ_CP031288.1_741039_741573_-	cd17934, DEXXQc_Upf1-like, DEXXQ-box helicase domain of Upf1-like helicase	NA|190aa|up_2|NZ_CP031288.1_741583_742153_-	NA	NA|155aa|up_1|NZ_CP031288.1_742371_742836_-	NA	NA|471aa|up_0|NZ_CP031288.1_746129_747542_-	COG2865, COG2865, Predicted transcriptional regulator containing an HTH domain and an uncharacterized domain shared with the mammalian protein Schlafen [Transcription]	NA|485aa|down_0|NZ_CP031288.1_749803_751258_+	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|614aa|down_1|NZ_CP031288.1_751592_753434_+	COG0595, COG0595, mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]	NA|318aa|down_2|NZ_CP031288.1_753505_754459_+	NA	NA|222aa|down_3|NZ_CP031288.1_760530_761196_+	COG1704, LemA, Uncharacterized conserved protein [Function unknown]	NA|142aa|down_4|NZ_CP031288.1_761842_762268_+	PRK12704, PRK12704, phosphodiesterase; Provisional	NA|405aa|down_5|NZ_CP031288.1_762345_763560_-	PRK00073, pgk, phosphoglycerate kinase; Provisional	NA|339aa|down_6|NZ_CP031288.1_763688_764705_-	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I	NA|312aa|down_7|NZ_CP031288.1_764797_765733_-	PRK08939, PRK08939, primosomal protein DnaI; Reviewed	NA|395aa|down_8|NZ_CP031288.1_765742_766927_-	COG3611, DnaB, Replication initiation/membrane attachment protein [DNA replication, recombination, and repair]	NA|275aa|down_9|NZ_CP031288.1_767084_767909_-	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
GCF_006970285.1_ASM697028v1	NZ_CP031288	Mycoplasma capricolum subsp. capripneumoniae strain JF6042 chromosome, complete genome	4	896433-896607	3	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	2	2	Orphan	DEDDh	NA|95aa|up_8|NZ_CP031288.1_882155_882440_-,NA|179aa|up_7|NZ_CP031288.1_883770_884307_-,NA	NA|438aa|up_9|NZ_CP031288.1_880799_882113_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|95aa|up_8|NZ_CP031288.1_882155_882440_-	NA	NA|179aa|up_7|NZ_CP031288.1_883770_884307_-	NA	NA|468aa|up_6|NZ_CP031288.1_884974_886378_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_CP031288.1_886379_887042_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|245aa|up_4|NZ_CP031288.1_888157_888892_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_CP031288.1_891106_891658_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|up_2|NZ_CP031288.1_891680_892988_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_CP031288.1_892971_894270_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_CP031288.1_894554_895355_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_CP031288.1_897263_898733_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|320aa|down_1|NZ_CP031288.1_898735_899695_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|672aa|down_2|NZ_CP031288.1_899953_901969_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_CP031288.1_901977_904818_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_CP031288.1_904810_905920_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_CP031288.1_905947_906622_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_CP031288.1_907656_909237_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_CP031288.1_909220_910153_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_CP031288.1_910161_911592_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_CP031288.1_911603_912533_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_006970285.1_ASM697028v1	NZ_CP031288	Mycoplasma capricolum subsp. capripneumoniae strain JF6042 chromosome, complete genome	5	896745-896993	4	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAGATTTATCAAAATGAGAT	24	0	0	NA	NA	NA	3	3	Orphan	DEDDh	NA|95aa|up_8|NZ_CP031288.1_882155_882440_-,NA|179aa|up_7|NZ_CP031288.1_883770_884307_-,NA	NA|438aa|up_9|NZ_CP031288.1_880799_882113_+	TIGR02644, Thymidine_phosphorylase, pyrimidine-nucleoside phosphorylase	NA|95aa|up_8|NZ_CP031288.1_882155_882440_-	NA	NA|179aa|up_7|NZ_CP031288.1_883770_884307_-	NA	NA|468aa|up_6|NZ_CP031288.1_884974_886378_+	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]	NA|221aa|up_5|NZ_CP031288.1_886379_887042_+	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed	NA|245aa|up_4|NZ_CP031288.1_888157_888892_-	pfam03382, DUF285, Mycoplasma protein of unknown function, DUF285	NA|184aa|up_3|NZ_CP031288.1_891106_891658_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|436aa|up_2|NZ_CP031288.1_891680_892988_-	cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase (ASL)_subgroup 1	NA|433aa|up_1|NZ_CP031288.1_892971_894270_-	PRK01117, PRK01117, adenylosuccinate synthetase; Provisional	NA|267aa|up_0|NZ_CP031288.1_894554_895355_-	cd01310, TatD_DNAse, TatD like proteins;  E	NA|490aa|down_0|NZ_CP031288.1_897263_898733_-	TIGR03752, conj_TIGR03752, integrating conjugative element protein, PFL_4705 family	NA|320aa|down_1|NZ_CP031288.1_898735_899695_-	COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair]	NA|672aa|down_2|NZ_CP031288.1_899953_901969_+	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|947aa|down_3|NZ_CP031288.1_901977_904818_+	PRK00349, uvrA, excinuclease ABC subunit UvrA	NA|370aa|down_4|NZ_CP031288.1_904810_905920_+	COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism]	NA|225aa|down_5|NZ_CP031288.1_905947_906622_+	TIGR04518, conserved_hypothetical_protein, ECF transporter S component, folate family	NA|527aa|down_6|NZ_CP031288.1_907656_909237_+	COG0682, Lgt, Prolipoprotein diacylglyceryltransferase [Cell envelope biogenesis, outer membrane]	NA|311aa|down_7|NZ_CP031288.1_909220_910153_+	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase	NA|477aa|down_8|NZ_CP031288.1_910161_911592_+	pfam01790, LGT, Prolipoprotein diacylglyceryl transferase	NA|310aa|down_9|NZ_CP031288.1_911603_912533_+	COG1481, COG1481, Uncharacterized protein conserved in bacteria [Function unknown]
GCF_006970285.1_ASM697028v1	NZ_CP031288	Mycoplasma capricolum subsp. capripneumoniae strain JF6042 chromosome, complete genome	6	980141-980242	5	CRISPRCasFinder	no		DEDDh	Orphan	AATCAAAATATAAATAATTCAAAT	24	0	0	NA	NA	NA	1	1	Orphan	DEDDh	NA|100aa|up_0|NZ_CP031288.1_979517_979817_-,NA|61aa|down_0|NZ_CP031288.1_982026_982209_+,NA|327aa|down_7|NZ_CP031288.1_989869_990850_-	NA|243aa|up_9|NZ_CP031288.1_964854_965583_-	COG2333, ComEC, Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]	NA|276aa|up_8|NZ_CP031288.1_972509_973337_+	cd07516, HAD_Pase, phosphatase, similar to Escherichia coli Cof and Thermotoga maritima TM0651; belongs to the haloacid dehalogenase-like superfamily	NA|103aa|up_7|NZ_CP031288.1_973348_973657_+	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains	NA|501aa|up_6|NZ_CP031288.1_973769_975272_-	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed	NA|325aa|up_5|NZ_CP031288.1_975274_976249_-	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family	NA|105aa|up_4|NZ_CP031288.1_976250_976565_-	pfam08921, DUF1904, Domain of unknown function (DUF1904)	NA|423aa|up_3|NZ_CP031288.1_976670_977939_-	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional	NA|276aa|up_2|NZ_CP031288.1_978019_978847_-	COG2364, COG2364, Predicted membrane protein [Function unknown]	NA|195aa|up_1|NZ_CP031288.1_978914_979499_-	TIGR04522, EcfS_MSC_0063, putative energy coupling factor transporter S component, MSC_0063 family	NA|100aa|up_0|NZ_CP031288.1_979517_979817_-	NA	NA|61aa|down_0|NZ_CP031288.1_982026_982209_+	NA	NA|581aa|down_1|NZ_CP031288.1_982252_983995_-	TIGR02002, PTS_system_glucose-specific_IIABC_component, PTS system, glucose-specific IIBC component	NA|150aa|down_2|NZ_CP031288.1_984102_984552_+	cd03017, PRX_BCP, Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of  thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides	NA|697aa|down_3|NZ_CP031288.1_984700_986791_+	pfam01732, DUF31, Putative peptidase (DUF31)	NA|302aa|down_4|NZ_CP031288.1_987527_988433_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|150aa|down_5|NZ_CP031288.1_988486_988936_+	pfam13518, HTH_28, Helix-turn-helix domain	NA|218aa|down_6|NZ_CP031288.1_988983_989637_-	cd09006, PNP_EcPNPI-like, purine nucleoside phosphorylases similar to Escherichia coli PNP-I (DeoD) and Trichomonas vaginalis PNP	NA|327aa|down_7|NZ_CP031288.1_989869_990850_-	NA	NA|312aa|down_8|NZ_CP031288.1_991703_992639_+	cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor 6-phosphofructokinase (pfkB) and related sugar kinases	NA|630aa|down_9|NZ_CP031288.1_996996_998886_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG
