assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	1	1084277-1084611	1,1,1	PILER-CR,CRISPRCasFinder,CRT	no	cas3	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	GTGTTCCCCGCGCCAGCGGGGATAAACC,GTGTTCCCCGCGCCAGCGGGGATAAACCGA,GTGTTCCCCGCGCCAGCGGGGATAAACC	28,30,28	0	0	NA	NA	I-E:I-E:I-E	5,5,5	5	Unclear	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|47aa|up_1|NZ_CP041392.1_1082986_1083127_-,NA	NA|434aa|up_9|NZ_CP041392.1_1073683_1074985_+	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA|745aa|up_8|NZ_CP041392.1_1075032_1077267_+	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional	NA|83aa|up_7|NZ_CP041392.1_1077344_1077593_+	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE	NA|112aa|up_6|NZ_CP041392.1_1077592_1077928_+	PRK09907, PRK09907, endoribonuclease MazF	NA|264aa|up_5|NZ_CP041392.1_1077998_1078790_+	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed	NA|546aa|up_4|NZ_CP041392.1_1079017_1080655_+	PRK05380, pyrG, CTP synthetase; Validated	NA|433aa|up_3|NZ_CP041392.1_1080742_1082041_+	PRK00077, eno, enolase; Provisional	NA|291aa|up_2|NZ_CP041392.1_1082100_1082973_-	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only]	NA|47aa|up_1|NZ_CP041392.1_1082986_1083127_-	NA	NA|224aa|up_0|NZ_CP041392.1_1083265_1083937_+	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE	NA|493aa|down_0|NZ_CP041392.1_1085248_1086727_-	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins	NA|426aa|down_1|NZ_CP041392.1_1086753_1088031_-	cd06174, MFS, Major Facilitator Superfamily	NA|262aa|down_2|NZ_CP041392.1_1088349_1089135_+	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs	NA|485aa|down_3|NZ_CP041392.1_1089204_1090659_+	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion]	NA|446aa|down_4|NZ_CP041392.1_1090752_1092090_+	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily	NA|260aa|down_5|NZ_CP041392.1_1092067_1092847_+	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion]	NA|287aa|down_6|NZ_CP041392.1_1092843_1093704_+	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion]	NA|192aa|down_7|NZ_CP041392.1_1093851_1094427_-	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription]	NA|87aa|down_8|NZ_CP041392.1_1094443_1094704_-	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion]	NA|424aa|down_9|NZ_CP041392.1_1094694_1095966_-	PRK10015, PRK10015, oxidoreductase; Provisional
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	2	1110160-1110861	2,2,2	PILER-CR,CRISPRCasFinder,CRT	no	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Type I-E	GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG,GAGTTCCCCGCGCCAGCGGGGATAAACCG	29,29,29	0	0	NA	NA	I-E:I-E:I-E	7,11,11	11	TypeI-E	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|571aa|up_9|NZ_CP041392.1_1098523_1100236_+	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit	NA|245aa|up_8|NZ_CP041392.1_1100310_1101045_+	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase	cas3|889aa|up_7|NZ_CP041392.1_1101403_1104070_+	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3	cas8e|495aa|up_6|NZ_CP041392.1_1104508_1105993_+	PRK09693, PRK09693, Cascade antiviral complex protein; Validated	cse2gr11|161aa|up_5|NZ_CP041392.1_1105985_1106468_+	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2	cas7|364aa|up_4|NZ_CP041392.1_1106480_1107572_+	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI	cas5|225aa|up_3|NZ_CP041392.1_1107574_1108249_+	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI	cas6e|200aa|up_2|NZ_CP041392.1_1108235_1108835_+	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI	cas1|306aa|up_1|NZ_CP041392.1_1108850_1109768_+	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI	cas2|95aa|up_0|NZ_CP041392.1_1109769_1110054_+	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional	NA|346aa|down_0|NZ_CP041392.1_1110943_1111981_-	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional	NA|303aa|down_1|NZ_CP041392.1_1112232_1113141_+	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD	NA|476aa|down_2|NZ_CP041392.1_1113142_1114570_+	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional	NA|202aa|down_3|NZ_CP041392.1_1114569_1115175_+	PRK03846, PRK03846, adenylylsulfate kinase; Provisional	NA|108aa|down_4|NZ_CP041392.1_1115224_1115548_+	pfam12084, DUF3561, Protein of unknown function (DUF3561)	NA|104aa|down_5|NZ_CP041392.1_1115741_1116053_+	PRK00888, ftsB, cell division protein FtsB; Reviewed	NA|237aa|down_6|NZ_CP041392.1_1116071_1116782_+	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase	NA|160aa|down_7|NZ_CP041392.1_1116781_1117261_+	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed	NA|350aa|down_8|NZ_CP041392.1_1117257_1118307_+	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed	NA|254aa|down_9|NZ_CP041392.1_1118287_1119049_+	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	3	1606643-1606760	3	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCGAGCCGTAGGCCGGATAAGGCGTTCACGC	31	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|62aa|up_9|NZ_CP041392.1_1595928_1596114_-	PRK09956, PRK09956, ISNCY family transposase	NA|300aa|up_8|NZ_CP041392.1_1596126_1597026_-	PRK09956, PRK09956, ISNCY family transposase	NA|397aa|up_7|NZ_CP041392.1_1597218_1598409_-	TIGR03379, glycerol3P_GlpC, glycerol-3-phosphate dehydrogenase, anaerobic, C subunit	NA|420aa|up_6|NZ_CP041392.1_1598405_1599665_-	COG3075, GlpB, Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]	NA|543aa|up_5|NZ_CP041392.1_1599654_1601283_-	PRK11101, glpA, anaerobic glycerol-3-phosphate dehydrogenase subunit A	NA|453aa|up_4|NZ_CP041392.1_1601555_1602914_+	PRK11273, glpT, glycerol-3-phosphate transporter	NA|359aa|up_3|NZ_CP041392.1_1602918_1603995_+	PRK11143, glpQ, glycerophosphodiester phosphodiesterase; Provisional	NA|217aa|up_2|NZ_CP041392.1_1604457_1605108_+	PRK09902, PRK09902, lipopolysaccharide kinase InaA	NA|85aa|up_1|NZ_CP041392.1_1605161_1605416_-	PRK10713, PRK10713, 2Fe-2S ferredoxin-like protein	NA|377aa|up_0|NZ_CP041392.1_1605415_1606546_-	PRK09101, nrdB, ribonucleotide-diphosphate reductase subunit beta; Reviewed	NA|762aa|down_0|NZ_CP041392.1_1606779_1609065_-	PRK09103, PRK09103, ribonucleoside-diphosphate reductase subunit alpha	NA|1251aa|down_1|NZ_CP041392.1_1609760_1613513_+	PRK09752, PRK09752, AIDA-I family autotransporter YfaL	NA|241aa|down_2|NZ_CP041392.1_1613640_1614363_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|876aa|down_3|NZ_CP041392.1_1614509_1617137_+	PRK05560, PRK05560, DNA gyrase subunit A; Validated	NA|563aa|down_4|NZ_CP041392.1_1617285_1618974_+	COG4685, COG4685, Uncharacterized protein conserved in bacteria [Function unknown]	NA|208aa|down_5|NZ_CP041392.1_1618970_1619594_+	COG3234, COG3234, Uncharacterized protein conserved in bacteria [Function unknown]	NA|1465aa|down_6|NZ_CP041392.1_1619737_1624132_+	COG2373, COG2373, Large extracellular alpha-helical protein [General function prediction only]	NA|550aa|down_7|NZ_CP041392.1_1624132_1625782_+	COG5445, COG5445, Predicted secreted protein [Function unknown]	NA|259aa|down_8|NZ_CP041392.1_1625786_1626563_+	COG4676, COG4676, Uncharacterized protein conserved in bacteria [Function unknown]	NA|395aa|down_9|NZ_CP041392.1_1626636_1627821_-	PRK05790, PRK05790, putative acyltransferase; Provisional
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	4	2273821-2273944	4	CRISPRCasFinder	no	DEDDh	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|30aa|down_7|NZ_CP041392.1_2282840_2282930_+	NA|471aa|up_9|NZ_CP041392.1_2263275_2264688_-	PRK09206, PRK09206, pyruvate kinase PykF	NA|70aa|up_8|NZ_CP041392.1_2265244_2265454_+	PRK10292, PRK10292, fumarate hydratase FumD	NA|209aa|up_7|NZ_CP041392.1_2265908_2266535_+	PRK09898, PRK09898, ferredoxin-like protein	NA|701aa|up_6|NZ_CP041392.1_2266555_2268658_+	PRK09849, PRK09849, putative oxidoreductase; Provisional	NA|216aa|up_5|NZ_CP041392.1_2268661_2269309_+	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein	NA|223aa|up_4|NZ_CP041392.1_2269372_2270041_+	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein	NA|262aa|up_3|NZ_CP041392.1_2270037_2270823_+	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional	NA|271aa|up_2|NZ_CP041392.1_2270826_2271639_+	PRK09946, PRK09946, hypothetical protein; Provisional	NA|535aa|up_1|NZ_CP041392.1_2271650_2273255_-	PRK09897, PRK09897, FAD-NAD(P)-binding protein	NA|102aa|up_0|NZ_CP041392.1_2273380_2273686_-	PRK11118, PRK11118, putative monooxygenase; Provisional	NA|419aa|down_0|NZ_CP041392.1_2274258_2275515_+	PRK09945, PRK09945, hypothetical protein; Provisional	NA|458aa|down_1|NZ_CP041392.1_2275555_2276929_-	PRK01766, PRK01766, multidrug efflux protein; Reviewed	NA|214aa|down_2|NZ_CP041392.1_2277143_2277785_+	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional	NA|383aa|down_3|NZ_CP041392.1_2277824_2278973_-	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase	NA|404aa|down_4|NZ_CP041392.1_2279263_2280475_-	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter	NA|311aa|down_5|NZ_CP041392.1_2280587_2281520_+	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional	NA|342aa|down_6|NZ_CP041392.1_2281516_2282542_-	PRK10703, PRK10703, HTH-type transcriptional repressor PurR	NA|30aa|down_7|NZ_CP041392.1_2282840_2282930_+	NA	NA|390aa|down_8|NZ_CP041392.1_2283095_2284265_+	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|194aa|down_9|NZ_CP041392.1_2284499_2285081_-	PRK10543, PRK10543, superoxide dismutase [Fe]
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	5	2955508-2955599	5	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	CCACCTTTTTTACCTGCTTCAGATGC	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|60aa|up_7|NZ_CP041392.1_2949667_2949847_-,NA	NA|1321aa|up_9|NZ_CP041392.1_2944848_2948811_+	PRK11809, putA, trifunctional transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed	NA|213aa|up_8|NZ_CP041392.1_2948850_2949489_-	PRK15008, PRK15008, HTH-type transcriptional regulator RutR; Provisional	NA|60aa|up_7|NZ_CP041392.1_2949667_2949847_-	NA	NA|364aa|up_6|NZ_CP041392.1_2949776_2950868_+	TIGR03612, RutA, pyrimidine utilization protein A	NA|231aa|up_5|NZ_CP041392.1_2950867_2951560_+	TIGR03614, RutB, pyrimidine utilization protein B	NA|129aa|up_4|NZ_CP041392.1_2951571_2951958_+	TIGR03610, RutC, pyrimidine utilization protein C	NA|267aa|up_3|NZ_CP041392.1_2951965_2952766_+	TIGR03611, RutD, pyrimidine utilization protein D	NA|197aa|up_2|NZ_CP041392.1_2952775_2953366_+	PRK05365, PRK05365, malonic semialdehyde reductase; Provisional	NA|165aa|up_1|NZ_CP041392.1_2953376_2953871_+	TIGR03615, flavoprotein_oxidoreductase, pyrimidine utilization flavin reductase protein F	NA|443aa|up_0|NZ_CP041392.1_2953891_2955220_+	TIGR03616, Putative_pyrimidine_permease_RutG, pyrimidine utilization transport protein G	NA|199aa|down_0|NZ_CP041392.1_2956022_2956619_+	PRK03767, PRK03767, NAD(P)H:quinone oxidoreductase; Provisional	NA|76aa|down_1|NZ_CP041392.1_2956639_2956867_+	PRK10174, PRK10174, hypothetical protein; Provisional	NA|414aa|down_2|NZ_CP041392.1_2956904_2958146_-	PRK10173, PRK10173, glucose-1-phosphatase/inositol phosphatase; Provisional	NA|419aa|down_3|NZ_CP041392.1_2958438_2959695_-	PRK09784, PRK09784, YccE family protein	NA|307aa|down_4|NZ_CP041392.1_2959955_2960876_+	PRK10266, PRK10266, curved DNA-binding protein	NA|102aa|down_5|NZ_CP041392.1_2960875_2961181_+	PRK10265, PRK10265, chaperone modulator CbpM	NA|200aa|down_6|NZ_CP041392.1_2961332_2961932_-	PRK04976, torD, chaperone protein TorD; Validated	NA|849aa|down_7|NZ_CP041392.1_2961928_2964475_-	PRK15102, PRK15102, trimethylamine-N-oxide reductase TorA	NA|391aa|down_8|NZ_CP041392.1_2964474_2965647_-	PRK15032, PRK15032, pentaheme c-type cytochrome TorC	NA|231aa|down_9|NZ_CP041392.1_2965776_2966469_+	PRK10766, PRK10766, two-component system response regulator TorR
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	6	3217004-3217148	6	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	GTAGGTCGGATAAGATGCGCAAGCATCGCATCCGACAATAAGTGCCGGATGC	52	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|330aa|up_9|NZ_CP041392.1_3204902_3205892_-	PRK00164, moaA, GTP 3',8-cyclase MoaA	NA|303aa|up_8|NZ_CP041392.1_3206288_3207197_+	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related	NA|674aa|up_7|NZ_CP041392.1_3207388_3209410_-	PRK05298, PRK05298, excinuclease ABC subunit UvrB	NA|226aa|up_6|NZ_CP041392.1_3209988_3210666_-	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD	NA|252aa|up_5|NZ_CP041392.1_3210658_3211414_-	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional	NA|385aa|up_4|NZ_CP041392.1_3211400_3212555_-	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed	NA|347aa|up_3|NZ_CP041392.1_3212551_3213592_-	PRK15108, PRK15108, biotin synthase; Provisional	NA|430aa|up_2|NZ_CP041392.1_3213678_3214968_+	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated	NA|159aa|up_1|NZ_CP041392.1_3215026_3215503_+	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional	NA|428aa|up_0|NZ_CP041392.1_3215654_3216938_+	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase	NA|754aa|down_0|NZ_CP041392.1_3217171_3219433_-	PRK11413, PRK11413, putative hydratase; Provisional	NA|478aa|down_1|NZ_CP041392.1_3219615_3221049_-	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region	NA|351aa|down_2|NZ_CP041392.1_3221124_3222177_-	NF033377, OMA_tautomer, 4-oxalomesaconate tautomerase	NA|318aa|down_3|NZ_CP041392.1_3222360_3223314_+	cd08440, PBP2_LTTR_like_4, TThe C-terminal substrate binding domain of an uncharacterized LysR-type transcriptional regulator, contains the type 2 periplasmic binding fold	NA|332aa|down_4|NZ_CP041392.1_3223354_3224350_-	PRK11028, PRK11028, 6-phosphogluconolactonase; Provisional	NA|273aa|down_5|NZ_CP041392.1_3224504_3225323_+	PRK10530, PRK10530, pyridoxal phosphate (PLP) phosphatase; Provisional	NA|353aa|down_6|NZ_CP041392.1_3225323_3226382_-	PRK11144, modC, molybdenum ABC transporter ATP-binding protein ModC	NA|230aa|down_7|NZ_CP041392.1_3226384_3227074_-	PRK09421, modB, molybdate ABC transporter permease subunit	NA|258aa|down_8|NZ_CP041392.1_3227073_3227847_-	PRK10677, modA, molybdate transporter periplasmic protein; Provisional	NA|50aa|down_9|NZ_CP041392.1_3228013_3228163_-	pfam10766, AcrZ, Multidrug efflux pump-associated protein AcrZ
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	7	3468192-3468288	7	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTGTAGGCCTGATAAGATGCGTCAAGC	27	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|231aa|up_9|NZ_CP041392.1_3459987_3460680_-	PRK15195, PRK15195, molecular chaperone FimC	NA|181aa|up_8|NZ_CP041392.1_3460899_3461442_-	PRK15194, PRK15194, type 1 fimbrial protein subunit FimA	NA|289aa|up_7|NZ_CP041392.1_3461912_3462779_+	PRK10792, PRK10792, bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA|71aa|up_6|NZ_CP041392.1_3462780_3462993_+	PRK11507, PRK11507, ribosome-associated protein YbcJ	NA|174aa|up_5|NZ_CP041392.1_3463100_3463622_+	COG1988, COG1988, Predicted membrane-bound metal-dependent hydrolases [General function prediction only]	NA|462aa|up_4|NZ_CP041392.1_3463657_3465043_-	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated	NA|165aa|up_3|NZ_CP041392.1_3465216_3465711_+	PRK10791, PRK10791, peptidylprolyl isomerase B	NA|241aa|up_2|NZ_CP041392.1_3465713_3466436_+	PRK05340, PRK05340, UDP-2,3-diacylglucosamine hydrolase; Provisional	NA|170aa|up_1|NZ_CP041392.1_3466553_3467063_+	COG0041, PurE, Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]	NA|356aa|up_0|NZ_CP041392.1_3467059_3468127_+	PRK06019, PRK06019, phosphoribosylaminoimidazole carboxylase ATPase subunit; Reviewed	NA|298aa|down_0|NZ_CP041392.1_3468321_3469215_-	PRK09411, PRK09411, carbamate kinase; Reviewed	NA|272aa|down_1|NZ_CP041392.1_3469211_3470027_-	pfam11392, DUF2877, Protein of unknown function (DUF2877)	NA|420aa|down_2|NZ_CP041392.1_3470037_3471297_-	pfam06545, DUF1116, Protein of unknown function (DUF1116)	NA|556aa|down_3|NZ_CP041392.1_3471306_3472974_-	PRK06091, PRK06091, membrane protein FdrA; Validated	NA|350aa|down_4|NZ_CP041392.1_3473290_3474340_+	PRK15025, PRK15025, ureidoglycolate dehydrogenase; Provisional	NA|412aa|down_5|NZ_CP041392.1_3474361_3475597_+	TIGR03176, AllC, allantoate amidohydrolase	NA|262aa|down_6|NZ_CP041392.1_3475607_3476393_+	TIGR03214, ura-cupin, putative allantoin catabolism protein	NA|382aa|down_7|NZ_CP041392.1_3476620_3477766_-	PRK09932, PRK09932, glycerate 3-kinase	NA|434aa|down_8|NZ_CP041392.1_3477787_3479089_-	PRK11412, PRK11412, uracil/xanthine transporter	NA|454aa|down_9|NZ_CP041392.1_3479145_3480507_-	PRK08044, PRK08044, allantoinase AllB
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	8	3608330-3608474	8	CRISPRCasFinder	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TTTTGCAGGCCTGATAAGACGCGGCAAGCGTCGCATCAGGCAT	43	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA|28aa|down_2|NZ_CP041392.1_3610519_3610603_-	NA|357aa|up_9|NZ_CP041392.1_3593468_3594539_-	PRK00147, queA, S-adenosylmethionine:tRNA ribosyltransferase-isomerase; Provisional	NA|194aa|up_8|NZ_CP041392.1_3594631_3595213_+	PRK10045, PRK10045, ACP phosphodiesterase	NA|606aa|up_7|NZ_CP041392.1_3595217_3597035_-	PRK10785, PRK10785, maltodextrin glucosidase; Provisional	NA|458aa|up_6|NZ_CP041392.1_3597190_3598564_-	PRK10580, proY, putative proline-specific permease; Provisional	NA|440aa|up_5|NZ_CP041392.1_3598639_3599959_-	PRK15433, PRK15433, branched-chain amino acid transporter carrier protein BrnQ	NA|432aa|up_4|NZ_CP041392.1_3600365_3601661_-	PRK11006, phoR, phosphate regulon sensor histidine kinase PhoR	NA|230aa|up_3|NZ_CP041392.1_3601718_3602408_-	PRK10161, PRK10161, phosphate response regulator transcription factor PhoB	NA|401aa|up_2|NZ_CP041392.1_3602597_3603800_+	PRK10966, PRK10966, exonuclease subunit SbcD; Provisional	NA|1049aa|up_1|NZ_CP041392.1_3603796_3606943_+	PRK10246, PRK10246, exonuclease subunit SbcC; Provisional	NA|395aa|up_0|NZ_CP041392.1_3607068_3608253_+	PRK10091, PRK10091, MFS transport protein AraJ; Provisional	NA|303aa|down_0|NZ_CP041392.1_3608497_3609406_-	PRK09557, PRK09557, fructokinase; Reviewed	NA|304aa|down_1|NZ_CP041392.1_3609530_3610442_+	COG2974, RdgC, DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]	NA|28aa|down_2|NZ_CP041392.1_3610519_3610603_-	NA	NA|95aa|down_3|NZ_CP041392.1_3611088_3611373_-	PRK10579, PRK10579, pyrimidine/purine nucleoside phosphorylase	NA|226aa|down_4|NZ_CP041392.1_3611444_3612122_-	PRK10481, PRK10481, hypothetical protein; Provisional	NA|64aa|down_5|NZ_CP041392.1_3612379_3612571_-	PRK10380, PRK10380, hypothetical protein; Provisional	NA|175aa|down_6|NZ_CP041392.1_3612620_3613145_-	PRK03731, aroL, shikimate kinase AroL	NA|121aa|down_7|NZ_CP041392.1_3613327_3613690_-	PRK00124, PRK00124, YaiI/YqxD family protein	NA|270aa|down_8|NZ_CP041392.1_3613817_3614627_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|372aa|down_9|NZ_CP041392.1_3614643_3615759_-	PRK10245, adrA, diguanylate cyclase AdrA; Provisional
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	9	4037626-4037761	3	PILER-CR	no		cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Orphan	TGAATCACCAATATTGAAAA	20	0	0	NA	NA	NA	2	2	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA,NA	NA|126aa|up_9|NZ_CP041392.1_4028334_4028712_+	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed	NA|281aa|up_8|NZ_CP041392.1_4028718_4029561_+	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	NA|160aa|up_7|NZ_CP041392.1_4029638_4030118_-	PRK10769, folA, type 3 dihydrofolate reductase	NA|621aa|up_6|NZ_CP041392.1_4030309_4032172_-	PRK03562, PRK03562, glutathione-regulated potassium-efflux system protein KefC; Provisional	NA|177aa|up_5|NZ_CP041392.1_4032164_4032695_-	PRK00871, PRK00871, glutathione-regulated potassium-efflux system oxidoreductase KefF	NA|444aa|up_4|NZ_CP041392.1_4032802_4034134_-	cd17316, MFS_SV2_like, Metazoan Synaptic vesicle glycoprotein 2 (SV2) and related small molecule transporters of the Major Facilitator Superfamily	NA|96aa|up_3|NZ_CP041392.1_4034190_4034478_-	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional	NA|429aa|up_2|NZ_CP041392.1_4034474_4035761_-	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional	NA|314aa|up_1|NZ_CP041392.1_4035811_4036753_-	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein	NA|257aa|up_0|NZ_CP041392.1_4036767_4037538_-	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed	NA|505aa|down_0|NZ_CP041392.1_4038010_4039525_+	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter	NA|381aa|down_1|NZ_CP041392.1_4039555_4040698_+	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated	NA|406aa|down_2|NZ_CP041392.1_4040815_4042033_+	PRK03525, PRK03525, L-carnitine CoA-transferase	NA|507aa|down_3|NZ_CP041392.1_4042139_4043660_+	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated	NA|262aa|down_4|NZ_CP041392.1_4043768_4044554_+	PRK03580, PRK03580, crotonobetainyl-CoA hydratase	NA|197aa|down_5|NZ_CP041392.1_4044559_4045150_+	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional	NA|132aa|down_6|NZ_CP041392.1_4045268_4045664_-	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF	NA|1073aa|down_7|NZ_CP041392.1_4045924_4049143_-	PRK05294, carB, carbamoyl-phosphate synthase large subunit	NA|383aa|down_8|NZ_CP041392.1_4049160_4050309_-	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit	NA|274aa|down_9|NZ_CP041392.1_4050764_4051586_-	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism]
GCF_007012305.1_ASM701230v1	NZ_CP041392	Escherichia coli strain ECOL-18-VL-LA-PA-Ryan-0026 chromosome, complete genome	10	4217578-4217727	9	CRISPRCasFinder	no	RT	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	Unclear	TGAACGCCTTATCCGACCTACACAGCACTGAACTCGTAGGCCTGATAAGACGCG	54	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,PD-DExK,RT,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,DinG,c2c9_V-U4	NA|120aa|up_9|NZ_CP041392.1_4206789_4207149_-,NA|195aa|up_8|NZ_CP041392.1_4207141_4207726_-,NA|213aa|up_6|NZ_CP041392.1_4208395_4209034_-,NA	NA|120aa|up_9|NZ_CP041392.1_4206789_4207149_-	NA	NA|195aa|up_8|NZ_CP041392.1_4207141_4207726_-	NA	NA|77aa|up_7|NZ_CP041392.1_4207787_4208018_-	COG3311, AlpA, Predicted transcriptional regulator [Transcription]	NA|213aa|up_6|NZ_CP041392.1_4208395_4209034_-	NA	NA|421aa|up_5|NZ_CP041392.1_4209063_4210326_-	PRK09692, PRK09692, integrase; Provisional	NA|340aa|up_4|NZ_CP041392.1_4210770_4211790_+	cd05283, CAD1, Cinnamyl alcohol dehydrogenases (CAD)	NA|501aa|up_3|NZ_CP041392.1_4211917_4213420_+	pfam05872, DUF853, Bacterial protein of unknown function (DUF853)	NA|361aa|up_2|NZ_CP041392.1_4213580_4214663_-	PRK15071, PRK15071, lipopolysaccharide ABC transporter permease; Provisional	NA|367aa|up_1|NZ_CP041392.1_4214662_4215763_-	PRK15120, PRK15120, lipopolysaccharide ABC transporter permease LptF; Provisional	NA|504aa|up_0|NZ_CP041392.1_4216029_4217541_+	PRK00913, PRK00913, multifunctional aminopeptidase A; Provisional	NA|148aa|down_0|NZ_CP041392.1_4217894_4218338_+	PRK05728, PRK05728, DNA polymerase III subunit chi; Validated	NA|952aa|down_1|NZ_CP041392.1_4218337_4221193_+	PRK05729, valS, valyl-tRNA synthetase; Reviewed	NA|396aa|down_2|NZ_CP041392.1_4221244_4222432_-	COG4269, COG4269, Predicted membrane protein [Function unknown]	NA|168aa|down_3|NZ_CP041392.1_4222624_4223128_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|139aa|down_4|NZ_CP041392.1_4223173_4223590_-	PRK11191, PRK11191, ribonuclease E inhibitor RraB	NA|335aa|down_5|NZ_CP041392.1_4223751_4224756_+	PRK03515, PRK03515, ornithine carbamoyltransferase subunit I; Provisional	NA|151aa|down_6|NZ_CP041392.1_4226678_4227131_-	COG2731, EbgC, Beta-galactosidase, beta subunit [Carbohydrate transport and metabolism]	NA|198aa|down_7|NZ_CP041392.1_4227275_4227869_-	COG1309, AcrR, Transcriptional regulator [Transcription]	NA|238aa|down_8|NZ_CP041392.1_4227939_4228653_+	PRK12742, PRK12742, SDR family oxidoreductase	NA|132aa|down_9|NZ_CP041392.1_4228783_4229179_+	cd02198, YjgH_like, YjgH belongs to a large family of YjgF/YER057c/UK114-like proteins present in bacteria, archaea, and eukaryotes with no definitive function
