assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007164525.1_ASM716452v1	NZ_AP019791	Rubrobacter xylanophilus strain AA3-22	1	331093-331187	1	CRISPRCasFinder	no		cas3,csa3,cas6,csx1,cas5,cas7,cas8b2,cas4,cas2,cas1,WYL,DEDDh,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8b1	Orphan	ACAGACAGGAGTAGCAGTCTTTCTAT	26	0	0	NA	NA	NA	1	1	Orphan	cas3,csa3,cas6,csx1,cas5,cas7,cas8b2,cas4,cas2,cas1,WYL,DEDDh,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8b1	NA|83aa|up_2|NZ_AP019791.1_327716_327965_+,NA|105aa|down_1|NZ_AP019791.1_331829_332144_+,NA|91aa|down_3|NZ_AP019791.1_333302_333575_+	NA|415aa|up_9|NZ_AP019791.1_318985_320230_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|308aa|up_8|NZ_AP019791.1_320226_321150_+	cd08343, ED_TypeI_classII_C, C-terminal domain of type I, class II extradiol dioxygenases, catalytic domain	NA|265aa|up_7|NZ_AP019791.1_321152_321947_+	TIGR04460, endura_MppR, enduracididine biosynthesis enzyme MppR	NA|489aa|up_6|NZ_AP019791.1_321943_323410_+	cd07093, ALDH_F8_HMSADH, Human aldehyde dehydrogenase family 8 member A1-like	NA|426aa|up_5|NZ_AP019791.1_323406_324684_+	cd03895, M20_ArgE_DapE-like, M20 Peptidases with similarity to acetylornithine deacetylases and succinyl-diaminopimelate desuccinylases	NA|511aa|up_4|NZ_AP019791.1_324683_326216_+	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism]	NA|483aa|up_3|NZ_AP019791.1_326212_327661_+	cd06450, DOPA_deC_like, DOPA decarboxylase family	NA|83aa|up_2|NZ_AP019791.1_327716_327965_+	NA	NA|437aa|up_1|NZ_AP019791.1_327998_329309_+	PRK13342, PRK13342, recombination factor protein RarA; Reviewed	NA|313aa|up_0|NZ_AP019791.1_329766_330705_+	pfam13546, DDE_5, DDE superfamily endonuclease	NA|192aa|down_0|NZ_AP019791.1_331257_331833_+	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate	NA|105aa|down_1|NZ_AP019791.1_331829_332144_+	NA	NA|306aa|down_2|NZ_AP019791.1_332319_333237_+	cd08270, MDR4, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family	NA|91aa|down_3|NZ_AP019791.1_333302_333575_+	NA	NA|281aa|down_4|NZ_AP019791.1_333768_334611_+	COG0384, COG0384, Predicted epimerase, PhzC/PhzF homolog [General function prediction only]	NA|312aa|down_5|NZ_AP019791.1_335925_336861_+	COG1846, MarR, Transcriptional regulators [Transcription]	NA|104aa|down_6|NZ_AP019791.1_339357_339669_+	pfam01527, HTH_Tnp_1, Transposase	NA|301aa|down_7|NZ_AP019791.1_339698_340601_+	PHA02517, PHA02517, putative transposase OrfB; Reviewed	NA|626aa|down_8|NZ_AP019791.1_340898_342776_-	pfam09594, GT87, Glycosyltransferase family 87	NA|385aa|down_9|NZ_AP019791.1_342772_343927_-	PRK13375, pimE, mannosyltransferase; Provisional
GCF_007164525.1_ASM716452v1	NZ_AP019791	Rubrobacter xylanophilus strain AA3-22	2	1669043-1679769	1,2,1,2,3	PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR	no	cas6,csx1,cas3,cas5,cas7,cas8b2,cas4,cas2,cas1,WYL	cas3,csa3,cas6,csx1,cas5,cas7,cas8b2,cas4,cas2,cas1,WYL,DEDDh,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8b1	Unclear	GTTGCAGAAGCCACTCCGCAACATAGGAGACTGAAAG,GTTGCAGAAGCCACTCCGCAACATAGGAGACTGAAAG,GTTGCAGAAGCCACTCCGCAACATAGGAGACTGAAAG,GTTGCAGAAGCCACTCCGCAACATAGGAGACTGAAAG,GTTTCAGAAGCCACTCCGCAACATAGGAGACTGAAAG	37,37,37,37,37	0	0	NA	NA	NA:NA:NA:NA:NA	142,145,145,142,142	145	Unclear	cas3,csa3,cas6,csx1,cas5,cas7,cas8b2,cas4,cas2,cas1,WYL,DEDDh,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8b1	NA,NA	csx1|410aa|up_9|NZ_AP019791.1_1657801_1659031_-	pfam09670, Cas_Cas02710, CRISPR-associated protein (Cas_Cas02710)	cas3|780aa|up_8|NZ_AP019791.1_1659169_1661509_-	TIGR01587, CRISPR-associated_endonuclease/helicase_Cas3, CRISPR-associated helicase Cas3	cas5|259aa|up_7|NZ_AP019791.1_1661511_1662288_-	TIGR01895, conserved_hypothetical_protein, CRISPR-associated protein Cas5, subtype I-B/TNEAP	cas7|354aa|up_6|NZ_AP019791.1_1662296_1663358_-	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP	cas8b2|464aa|up_5|NZ_AP019791.1_1663367_1664759_-	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1	cas4|286aa|up_4|NZ_AP019791.1_1665111_1665969_-	pfam06023, Csa1, CRISPR-associated exonuclease Csa1	cas4|197aa|up_3|NZ_AP019791.1_1665970_1666561_-	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4	cas2|85aa|up_2|NZ_AP019791.1_1666547_1666802_-	pfam09827, CRISPR_Cas2, CRISPR associated protein Cas2	cas1|334aa|up_1|NZ_AP019791.1_1666801_1667803_-	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1	WYL|303aa|up_0|NZ_AP019791.1_1667873_1668782_-	COG2378, COG2378, Predicted transcriptional regulator [Transcription]	NA|1616aa|down_0|NZ_AP019791.1_1679843_1684691_+	pfam05088, Bac_GDH, Bacterial NAD-glutamate dehydrogenase	NA|392aa|down_1|NZ_AP019791.1_1684687_1685863_-	PRK08235, PRK08235, acetyl-CoA C-acetyltransferase	NA|538aa|down_2|NZ_AP019791.1_1685993_1687607_+	cd05972, MACS_like, Medium-chain acyl-CoA synthetase (MACS or ACSM)	NA|251aa|down_3|NZ_AP019791.1_1687596_1688349_-	cd01144, BtuF, Cobalamin binding protein BtuF	NA|318aa|down_4|NZ_AP019791.1_1688358_1689312_-	COG1703, ArgK, Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]	NA|424aa|down_5|NZ_AP019791.1_1689311_1690583_-	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase	NA|946aa|down_6|NZ_AP019791.1_1690627_1693465_-	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed	NA|412aa|down_7|NZ_AP019791.1_1693705_1694941_+	COG0626, MetC, Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]	NA|121aa|down_8|NZ_AP019791.1_1694956_1695319_+	pfam01957, NfeD, NfeD-like C-terminal, partner-binding	NA|684aa|down_9|NZ_AP019791.1_1695305_1697357_-	COG1331, COG1331, Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
GCF_007164525.1_ASM716452v1	NZ_AP019791	Rubrobacter xylanophilus strain AA3-22	3	2585719-2589312	3,2,4	CRISPRCasFinder,CRT,PILER-CR	no	cas2,cas1,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,csx1,cas4,cas3,cas5,cas7,cas8b1,cas6	cas3,csa3,cas6,csx1,cas5,cas7,cas8b2,cas4,cas2,cas1,WYL,DEDDh,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8b1	Type I-B,Type III-A,Type III-B,Type III-C,Type III-D	GTTTCAATCCCTCATAGGTAGGCTCAAAAC,GTTTCAATCCCTCATAGGTAGGCTCAAAAC,GTTTCAATCCCTCATAGGTAGGCTCAAAAC	30,30,30	0	0	NA	NA	NA:NA:NA	53,53,52	53	TypeI-B,TypeIII-A,TypeIII-B,TypeIII-C,TypeIII-D	cas3,csa3,cas6,csx1,cas5,cas7,cas8b2,cas4,cas2,cas1,WYL,DEDDh,csm6,cmr6gr7,cmr5gr11,cmr4gr7,cmr3gr5,cas10,cmr1gr7,cas8b1	NA,NA	NA|453aa|up_9|NZ_AP019791.1_2573915_2575274_-	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase	NA|211aa|up_8|NZ_AP019791.1_2575354_2575987_-	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism]	NA|582aa|up_7|NZ_AP019791.1_2576084_2577830_+	pfam07228, SpoIIE, Stage II sporulation protein E (SpoIIE)	NA|244aa|up_6|NZ_AP019791.1_2578064_2578796_-	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]	NA|280aa|up_5|NZ_AP019791.1_2578788_2579628_-	cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system	NA|307aa|up_4|NZ_AP019791.1_2579620_2580541_-	cd06581, TM_PBP1_LivM_like, Transmembrane subunit (TM) of Escherichia coli LivM and related proteins	NA|292aa|up_3|NZ_AP019791.1_2580537_2581413_-	COG0559, LivH, Branched-chain amino acid ABC-type transport system, permease components [Amino acid transport and metabolism]	NA|419aa|up_2|NZ_AP019791.1_2581629_2582886_+	cd06346, PBP1_ABC_ligand_binding-like, type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions	NA|427aa|up_1|NZ_AP019791.1_2583215_2584496_-	TIGR01679, bact_FAD_ox, FAD-linked oxidoreductase	NA|408aa|up_0|NZ_AP019791.1_2584492_2585716_-	cd06813, PLPDE_III_DSD_D-TA_like_2, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzymes Similar to D-Serine Dehydratase and D-Threonine Aldolase, Unknown Group 2	cas2|90aa|down_0|NZ_AP019791.1_2589471_2589741_-	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2	cas1|332aa|down_1|NZ_AP019791.1_2589747_2590743_-	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1	csm6|374aa|down_2|NZ_AP019791.1_2590752_2591874_-	cd09742, Csm6_III-A, CRISPR/Cas system-associated protein Csm6	cmr6gr7|407aa|down_3|NZ_AP019791.1_2591866_2593087_-	cd09661, Cmr6_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr6	cmr5gr11|132aa|down_4|NZ_AP019791.1_2593086_2593482_-	cd09749, Cmr5_III-B, CRISPR/Cas system-associated protein Cmr5	cmr4gr7|265aa|down_5|NZ_AP019791.1_2593481_2594276_-	TIGR02580, putative_CRISPR-associated_protein, CRISPR type III-B/RAMP module RAMP protein Cmr4	cmr3gr5|353aa|down_6|NZ_AP019791.1_2594272_2595331_-	cd09748, Cmr3_III-B, CRISPR/Cas system-associated RAMP superfamily protein Cmr3	cas10|630aa|down_7|NZ_AP019791.1_2595327_2597217_-	cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10	cmr1gr7|316aa|down_8|NZ_AP019791.1_2597213_2598161_-	COG1367, COG1367, CRISPR system related protein, RAMP superfamily [Defense mechanisms]	csx1|582aa|down_9|NZ_AP019791.1_2598160_2599906_-	pfam09455, Cas_DxTHG, CRISPR-associated (Cas) DxTHG family
