assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	1	10197-10311	1	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	TTTGCAGACGATAAAAATATTGTTGCCA	28	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|128aa|up_2|NZ_CP041614.1_8561_8945_+,NA|197aa|down_5|NZ_CP041614.1_17116_17707_-	NA|NA	NA	NA|463aa|up_8|NZ_CP041614.1_15_1404_+	TIGR00362, DnaA, chromosomal replication initiator protein DnaA	NA|367aa|up_7|NZ_CP041614.1_1423_2524_+	PRK05643, PRK05643, DNA polymerase III subunit beta; Validated	NA|366aa|up_6|NZ_CP041614.1_2860_3958_+	PRK00064, recF, recombination protein F; Reviewed	NA|807aa|up_5|NZ_CP041614.1_3959_6380_+	PRK14939, gyrB, DNA gyrase subunit B; Provisional	NA|110aa|up_4|NZ_CP041614.1_6955_7285_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|409aa|up_3|NZ_CP041614.1_7287_8514_+	cd02110, SO_family_Moco_dimer, Subgroup of sulfite oxidase (SO) family molybdopterin binding domains that contains conserved dimerization domain	NA|128aa|up_2|NZ_CP041614.1_8561_8945_+	NA	NA|117aa|up_1|NZ_CP041614.1_8946_9297_+	COG2863, COG2863, Cytochrome c553 [Energy production and conversion]	NA|246aa|up_0|NZ_CP041614.1_9343_10081_-	cd10801, LamB_YcsF_like_1, uncharacterized proteins similar to the Aspergillus nidulans lactam utilization protein LamB	NA|261aa|down_0|NZ_CP041614.1_11186_11969_-	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism]	NA|356aa|down_1|NZ_CP041614.1_12118_13186_+	pfam08668, HDOD, HDOD domain	NA|690aa|down_2|NZ_CP041614.1_13237_15307_-	PRK01233, glyS, glycyl-tRNA synthetase subunit beta; Validated	NA|302aa|down_3|NZ_CP041614.1_15318_16224_-	PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated	NA|200aa|down_4|NZ_CP041614.1_16404_17004_+	pfam03352, Adenine_glyco, Methyladenine glycosylase	NA|197aa|down_5|NZ_CP041614.1_17116_17707_-	NA	NA|146aa|down_6|NZ_CP041614.1_22001_22439_-	COG2258, COG2258, Uncharacterized protein conserved in bacteria [Function unknown]	NA|78aa|down_7|NZ_CP041614.1_22472_22706_-	PRK00299, PRK00299, sulfurtransferase TusA	NA|160aa|down_8|NZ_CP041614.1_22873_23353_-	cd00002, YbaK_deacylase, This CD includes cysteinyl-tRNA(Pro) deacylases from Haemophilus influenzae and Escherichia coli and other related bacterial proteins	NA|167aa|down_9|NZ_CP041614.1_23349_23850_-	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	2	224723-224802	2	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	TCCAGTTCGGCTTGTAACTCTGG	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA,NA|189aa|down_2|NZ_CP041614.1_228139_228706_-	NA|849aa|up_9|NZ_CP041614.1_209983_212530_-	cd06238, M14-like, Peptidase M14-like domain; uncharacterized subgroup	NA|193aa|up_8|NZ_CP041614.1_212781_213360_+	PRK11190, PRK11190, iron-sulfur cluster biogenesis protein NfuA	NA|446aa|up_7|NZ_CP041614.1_213495_214833_-	cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins	NA|354aa|up_6|NZ_CP041614.1_214854_215916_+	cd10973, CE4_DAC_u4_5s, Putative catalytic NodB homology domain of uncharacterized bacterial polysaccharide deacetylases which consist of a 5-stranded beta/alpha barrel	NA|347aa|up_5|NZ_CP041614.1_215964_217005_-	PRK00742, PRK00742, chemotaxis-specific protein-glutamate methyltransferase CheB	NA|279aa|up_4|NZ_CP041614.1_217078_217915_-	smart00138, MeTrc, Methyltransferase, chemotaxis proteins	NA|1063aa|up_3|NZ_CP041614.1_218165_221354_-	PRK15041, PRK15041, methyl-accepting chemotaxis protein	NA|192aa|up_2|NZ_CP041614.1_221560_222136_-	COG0835, CheW, Chemotaxis signal transduction protein [Cell motility and secretion / Signal transduction mechanisms]	NA|700aa|up_1|NZ_CP041614.1_222204_224304_-	COG0643, CheA, Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]	NA|121aa|up_0|NZ_CP041614.1_224344_224707_-	cd17562, REC_CheY4-like, phosphoacceptor receiver (REC) domain of chemotaxis response regulator CheY4 and similar CheY family proteins	NA|305aa|down_0|NZ_CP041614.1_226179_227094_-	PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional	NA|328aa|down_1|NZ_CP041614.1_227156_228140_-	pfam02628, COX15-CtaA, Cytochrome oxidase assembly protein	NA|189aa|down_2|NZ_CP041614.1_228139_228706_-	NA	NA|73aa|down_3|NZ_CP041614.1_229801_230020_+	pfam11137, DUF2909, Protein of unknown function (DUF2909)	NA|292aa|down_4|NZ_CP041614.1_230127_231003_-	cd01665, Cyt_c_Oxidase_III, Cytochrome c oxidase subunit III	NA|190aa|down_5|NZ_CP041614.1_230999_231569_-	PRK05089, PRK05089, cytochrome C oxidase assembly protein; Provisional	NA|543aa|down_6|NZ_CP041614.1_231571_233200_-	cd01663, Cyt_c_Oxidase_I, Cytochrome C oxidase subunit I	NA|374aa|down_7|NZ_CP041614.1_233209_234331_-	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|171aa|down_8|NZ_CP041614.1_234764_235277_-	NF033429, ImuA_translesion, translesion DNA synthesis-associated protein ImuA	NA|206aa|down_9|NZ_CP041614.1_235309_235927_-	PRK00215, PRK00215, transcriptional repressor LexA
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	3	795806-795908	3	CRISPRCasFinder	no	DEDDh	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Unclear	GGCCTGCAGTGGTTAGAGCTAAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|100aa|up_7|NZ_CP041614.1_789165_789465_+,NA|102aa|up_5|NZ_CP041614.1_789925_790231_+,NA	NA|360aa|up_9|NZ_CP041614.1_786684_787764_-	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain	NA|323aa|up_8|NZ_CP041614.1_787912_788881_+	PRK11815, PRK11815, tRNA dihydrouridine(20/20a) synthase DusA	NA|100aa|up_7|NZ_CP041614.1_789165_789465_+	NA	NA|73aa|up_6|NZ_CP041614.1_789611_789830_+	pfam04024, PspC, PspC domain	NA|102aa|up_5|NZ_CP041614.1_789925_790231_+	NA	NA|246aa|up_4|NZ_CP041614.1_790338_791076_-	PRK06688, PRK06688, enoyl-CoA hydratase; Provisional	NA|159aa|up_3|NZ_CP041614.1_791107_791584_+	pfam04314, PCuAC, Copper chaperone PCu(A)C	NA|324aa|up_2|NZ_CP041614.1_791614_792586_+	pfam10095, DUF2333, Uncharacterized protein conserved in bacteria (DUF2333)	NA|250aa|up_1|NZ_CP041614.1_792593_793343_+	TIGR04219, hypothetical_protein, outer membrane protein	NA|449aa|up_0|NZ_CP041614.1_793569_794916_-	PRK09465, tolC, outer membrane channel protein; Reviewed	NA|149aa|down_0|NZ_CP041614.1_796057_796504_+	pfam06853, DUF1249, Protein of unknown function (DUF1249)	NA|191aa|down_1|NZ_CP041614.1_797562_798135_+	PRK11071, PRK11071, esterase YqiA; Provisional	NA|629aa|down_2|NZ_CP041614.1_798190_800077_+	PRK05559, PRK05559, DNA topoisomerase IV subunit B; Reviewed	NA|388aa|down_3|NZ_CP041614.1_800130_801294_+	COG2133, COG2133, Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]	NA|64aa|down_4|NZ_CP041614.1_803645_803837_-	cd19945, Fer2_BFD, bacterioferritin-associated ferredoxin (BFD) [2Fe-2S]-binding domain	NA|526aa|down_5|NZ_CP041614.1_804102_805680_+	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer)	NA|309aa|down_6|NZ_CP041614.1_805749_806676_-	cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase	NA|111aa|down_7|NZ_CP041614.1_806734_807067_+	pfam11872, DUF3392, Protein of unknown function (DUF3392)	NA|231aa|down_8|NZ_CP041614.1_807200_807893_-	cd08562, GDPD_EcUgpQ_like, Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins	NA|1067aa|down_9|NZ_CP041614.1_807892_811093_-	PRK10929, PRK10929, putative mechanosensitive channel protein; Provisional
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	4	868480-868586	4	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	TTCCAGTGGTGATGATATGACTATGTTGCC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|170aa|up_7|NZ_CP041614.1_848604_849114_+,NA|143aa|up_0|NZ_CP041614.1_866909_867338_+,NA|450aa|down_9|NZ_CP041614.1_884859_886209_+	NA|79aa|up_9|NZ_CP041614.1_847212_847449_-	pfam06794, UPF0270, Uncharacterized protein family (UPF0270)	NA|324aa|up_8|NZ_CP041614.1_847451_848423_-	PRK10985, PRK10985, putative hydrolase; Provisional	NA|170aa|up_7|NZ_CP041614.1_848604_849114_+	NA	NA|532aa|up_6|NZ_CP041614.1_849208_850804_+	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|148aa|up_5|NZ_CP041614.1_851020_851464_-	pfam09523, DUF2390, Protein of unknown function (DUF2390)	NA|637aa|up_4|NZ_CP041614.1_851553_853464_-	PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional	NA|67aa|up_3|NZ_CP041614.1_853645_853846_+	TIGR02443, Hypothetical_protein_yheV	NA|378aa|up_2|NZ_CP041614.1_862211_863345_-	cd06160, S2P-M50_like_2, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms	NA|350aa|up_1|NZ_CP041614.1_865462_866512_-	PRK09489, rsmC, 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC	NA|143aa|up_0|NZ_CP041614.1_866909_867338_+	NA	NA|454aa|down_0|NZ_CP041614.1_871059_872421_-	COG1785, PhoA, Alkaline phosphatase [Inorganic ion transport and metabolism]	NA|318aa|down_1|NZ_CP041614.1_872493_873447_-	PRK05246, PRK05246, glutathione synthetase; Provisional	NA|243aa|down_2|NZ_CP041614.1_873630_874359_-	COG1385, COG1385, Uncharacterized protein conserved in bacteria [Function unknown]	NA|240aa|down_3|NZ_CP041614.1_874366_875086_-	PRK15137, PRK15137, DNA-specific endonuclease I; Provisional	NA|183aa|down_4|NZ_CP041614.1_875274_875823_-	PRK04860, PRK04860, SprT family zinc-dependent metalloprotease	NA|389aa|down_5|NZ_CP041614.1_875973_877140_-	cd00501, Peptidase_C15, Pyroglutamyl peptidase (PGP) type I, also known as pyrrolidone carboxyl peptidase (pcp) type I:  Enzymes responsible for cleaving pyroglutamate (pGlu) from the N-terminal end of specialized proteins	NA|304aa|down_6|NZ_CP041614.1_877420_878332_-	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|1519aa|down_7|NZ_CP041614.1_878451_883008_+	PRK08591, PRK08591, acetyl-CoA carboxylase biotin carboxylase subunit; Validated	NA|465aa|down_8|NZ_CP041614.1_883274_884669_+	PRK10446, PRK10446, 30S ribosomal protein S6--L-glutamate ligase	NA|450aa|down_9|NZ_CP041614.1_884859_886209_+	NA
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	5	1229607-1229708	5	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	GTTCTGACCCCTTTATCCGCTTTATCT	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|140aa|up_2|NZ_CP041614.1_1227317_1227737_-,NA|113aa|up_0|NZ_CP041614.1_1228905_1229244_-,NA|344aa|down_1|NZ_CP041614.1_1230490_1231522_-,NA|188aa|down_2|NZ_CP041614.1_1231633_1232197_-	NA|410aa|up_9|NZ_CP041614.1_1218248_1219478_-	PRK11192, PRK11192, ATP-dependent RNA helicase SrmB; Provisional	NA|251aa|up_8|NZ_CP041614.1_1219594_1220347_-	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only]	NA|448aa|up_7|NZ_CP041614.1_1220801_1222145_+	pfam05525, Branch_AA_trans, Branched-chain amino acid transport protein	NA|306aa|up_6|NZ_CP041614.1_1222244_1223162_+	PRK00283, xerD, tyrosine recombinase	NA|246aa|up_5|NZ_CP041614.1_1223596_1224334_+	PRK10877, PRK10877, protein disulfide isomerase II DsbC; Provisional	NA|575aa|up_4|NZ_CP041614.1_1224541_1226266_+	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ	NA|280aa|up_3|NZ_CP041614.1_1226291_1227131_-	COG2521, COG2521, Predicted archaeal methyltransferase [General function prediction only]	NA|140aa|up_2|NZ_CP041614.1_1227317_1227737_-	NA	NA|174aa|up_1|NZ_CP041614.1_1228176_1228698_-	cd04332, YbaK_like, YbaK-like	NA|113aa|up_0|NZ_CP041614.1_1228905_1229244_-	NA	NA|111aa|down_0|NZ_CP041614.1_1229794_1230127_+	TIGR04102, SEC-C_motif_domain_protein, SWIM/SEC-C metal-binding motif protein, PBPRA1643 family	NA|344aa|down_1|NZ_CP041614.1_1230490_1231522_-	NA	NA|188aa|down_2|NZ_CP041614.1_1231633_1232197_-	NA	NA|219aa|down_3|NZ_CP041614.1_1233360_1234017_-	PRK00702, PRK00702, ribose-5-phosphate isomerase RpiA	NA|317aa|down_4|NZ_CP041614.1_1234685_1235636_+	pfam05661, DUF808, Protein of unknown function (DUF808)	NA|220aa|down_5|NZ_CP041614.1_1235834_1236494_+	cd01920, cyclophilin_EcCYP_like, cyclophilin_EcCYP_like: cyclophilin-type A-like peptidylprolyl cis- trans isomerase (PPIase) domain similar to the cytosolic E	NA|296aa|down_6|NZ_CP041614.1_1236536_1237424_-	cd08438, PBP2_CidR, The C-terminal substrate binding domain of LysR-like transcriptional regulator CidR, contains the type 2 periplasmic binding fold	NA|134aa|down_7|NZ_CP041614.1_1237635_1238037_+	pfam03788, LrgA, LrgA family	NA|145aa|down_8|NZ_CP041614.1_1238807_1239242_-	cd04584, CBS_pair_AcuB_like, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the ACT domain	NA|591aa|down_9|NZ_CP041614.1_1239443_1241216_+	pfam09423, PhoD, PhoD-like phosphatase
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	6	1434585-1434690	6	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	CATCTTTCTCAGGATGTTAAACCGAGT	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA,NA|138aa|down_0|NZ_CP041614.1_1436477_1436891_+,NA|135aa|down_1|NZ_CP041614.1_1436894_1437299_+,NA|317aa|down_7|NZ_CP041614.1_1444009_1444960_+	NA|167aa|up_9|NZ_CP041614.1_1421910_1422411_+	pfam07295, DUF1451, Zinc-ribbon containing domain	NA|608aa|up_8|NZ_CP041614.1_1422840_1424664_+	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]	NA|515aa|up_7|NZ_CP041614.1_1424754_1426299_-	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|159aa|up_6|NZ_CP041614.1_1427274_1427751_-	PRK00016, PRK00016, metal-binding heat shock protein; Provisional	NA|348aa|up_5|NZ_CP041614.1_1427740_1428784_-	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]	NA|475aa|up_4|NZ_CP041614.1_1428929_1430354_-	PRK14325, PRK14325, (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional	NA|81aa|up_3|NZ_CP041614.1_1430443_1430686_-	TIGR04479, bcpD_PhpK_rSAM, radical SAM P-methyltransferase, PhpK family	NA|379aa|up_2|NZ_CP041614.1_1431054_1432191_+	PRK08849, PRK08849, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional	NA|195aa|up_1|NZ_CP041614.1_1432395_1432980_+	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional	NA|364aa|up_0|NZ_CP041614.1_1433110_1434202_+	PRK09601, PRK09601, redox-regulated ATPase YchF	NA|138aa|down_0|NZ_CP041614.1_1436477_1436891_+	NA	NA|135aa|down_1|NZ_CP041614.1_1436894_1437299_+	NA	NA|316aa|down_2|NZ_CP041614.1_1437359_1438307_-	PRK01259, PRK01259, ribose-phosphate diphosphokinase	NA|286aa|down_3|NZ_CP041614.1_1438380_1439238_-	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional	NA|224aa|down_4|NZ_CP041614.1_1439238_1439910_-	pfam03550, LolB, Outer membrane lipoprotein LolB	NA|417aa|down_5|NZ_CP041614.1_1440179_1441430_+	PRK00045, hemA, glutamyl-tRNA reductase; Reviewed	NA|281aa|down_6|NZ_CP041614.1_1442587_1443430_+	PRK09328, PRK09328, N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional	NA|317aa|down_7|NZ_CP041614.1_1444009_1444960_+	NA	NA|338aa|down_8|NZ_CP041614.1_1445072_1446086_+	cd00190, Tryp_SPc, Trypsin-like serine protease; Many of these are synthesized as inactive precursor zymogens that are cleaved during limited proteolysis to generate their active forms	NA|132aa|down_9|NZ_CP041614.1_1446505_1446901_+	pfam04247, SirB, Invasion gene expression up-regulator, SirB
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	7	1934758-1934865	7	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	ACGTTTAAATAAATGCTCTGATGTGA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA,NA	NA|571aa|up_9|NZ_CP041614.1_1917274_1918987_-	COG3829, RocR, Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]	NA|396aa|up_8|NZ_CP041614.1_1919403_1920591_+	PRK07200, PRK07200, aspartate/ornithine carbamoyltransferase family protein; Validated	NA|402aa|up_7|NZ_CP041614.1_1920670_1921876_+	PRK08206, PRK08206, diaminopropionate ammonia-lyase; Provisional	NA|404aa|up_6|NZ_CP041614.1_1921982_1923194_+	PRK13004, PRK13004, YgeY family selenium metabolism-linked hydrolase	NA|467aa|up_5|NZ_CP041614.1_1923310_1924711_+	PRK08323, PRK08323, phenylhydantoinase; Validated	NA|301aa|up_4|NZ_CP041614.1_1924803_1925706_+	PRK12354, PRK12354, carbamate kinase; Reviewed	NA|544aa|up_3|NZ_CP041614.1_1925820_1927452_+	PRK12771, PRK12771, putative glutamate synthase (NADPH) small subunit; Provisional	NA|1214aa|up_2|NZ_CP041614.1_1927461_1931103_+	TIGR02176, pyruvate_flavodoxin/ferrodoxin_oxidoreductase, pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric	NA|532aa|up_1|NZ_CP041614.1_1931578_1933174_-	TIGR03309, matur_yqeB, selenium-dependent molybdenum hydroxylase system protein, YqeB family	NA|311aa|up_0|NZ_CP041614.1_1933207_1934140_-	TIGR03172, Uncharacterized_protein_YqeC, probable selenium-dependent hydroxylase accessory protein YqeC	NA|1037aa|down_0|NZ_CP041614.1_1935189_1938300_+	PRK09853, PRK09853, putative selenate reductase subunit YgfK; Provisional	NA|443aa|down_1|NZ_CP041614.1_1938311_1939640_+	PRK07203, PRK07203, putative aminohydrolase SsnA	NA|161aa|down_2|NZ_CP041614.1_1942008_1942491_+	COG2080, CoxS, Aerobic-type carbon monoxide dehydrogenase, small subunit CoxS/CutS homologs [Energy production and conversion]	NA|284aa|down_3|NZ_CP041614.1_1942484_1943336_+	COG1319, CoxM, Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs [Energy production and conversion]	NA|311aa|down_4|NZ_CP041614.1_1943430_1944363_+	COG0540, PyrB, Aspartate carbamoyltransferase, catalytic chain [Nucleotide transport and metabolism]	NA|153aa|down_5|NZ_CP041614.1_1944362_1944821_+	PRK00893, PRK00893, aspartate carbamoyltransferase regulatory subunit; Reviewed	NA|265aa|down_6|NZ_CP041614.1_1945192_1945987_+	PRK09799, PRK09799, putative oxidoreductase; Provisional	NA|957aa|down_7|NZ_CP041614.1_1945989_1948860_+	PRK09800, PRK09800, putative hypoxanthine oxidase; Provisional	NA|471aa|down_8|NZ_CP041614.1_1949020_1950433_+	TIGR03173, pbuX, xanthine permease	NA|439aa|down_9|NZ_CP041614.1_1950498_1951815_+	PRK09228, PRK09228, guanine deaminase; Provisional
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	8	2224011-2224114	8	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	CTGTAAGTGAGCCTGCGAACGTTC	24	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|717aa|up_7|NZ_CP041614.1_2209404_2211555_-,NA|489aa|down_9|NZ_CP041614.1_2237634_2239101_+	NA|135aa|up_9|NZ_CP041614.1_2208306_2208711_+	pfam10975, DUF2802, Protein of unknown function (DUF2802)	NA|115aa|up_8|NZ_CP041614.1_2209003_2209348_-	COG2257, COG2257, Uncharacterized homolog of the cytoplasmic domain of flagellar protein FhlB [Function unknown]	NA|717aa|up_7|NZ_CP041614.1_2209404_2211555_-	NA	NA|276aa|up_6|NZ_CP041614.1_2211791_2212619_+	pfam04333, MlaA, MlaA lipoprotein	NA|368aa|up_5|NZ_CP041614.1_2212685_2213789_+	cd17555, REC_RssB-like, phosphoacceptor receiver (REC) domain of Pseudomonas aeruginosa RssB and similar domains	NA|116aa|up_4|NZ_CP041614.1_2214170_2214518_+	PRK12275, PRK12275, hypothetical protein; Reviewed	NA|493aa|up_3|NZ_CP041614.1_2214887_2216366_-	cd17346, MFS_DtpA_like, Dipeptide and tripeptide permease A (DtpA)-like subfamily of the Major Facilitator Superfamily of transporters	NA|511aa|up_2|NZ_CP041614.1_2216943_2218476_-	COG1236, YSH1, Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]	NA|181aa|up_1|NZ_CP041614.1_2219055_2219598_+	TIGR01955, Transcriptional_activator_rfaH	NA|912aa|up_0|NZ_CP041614.1_2220735_2223471_+	COG1596, Wza, Periplasmic protein involved in polysaccharide export, contains    SLBB domain of b-grasp fold [Cell wall/membrane/envelope biogenesis]	NA|319aa|down_0|NZ_CP041614.1_2224172_2225129_+	pfam02706, Wzz, Chain length determinant protein	NA|330aa|down_1|NZ_CP041614.1_2225148_2226138_+	TIGR03025, EPS_sugtrans, exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase	NA|150aa|down_2|NZ_CP041614.1_2226179_2226629_+	cd03430, GDPMH, GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily	NA|471aa|down_3|NZ_CP041614.1_2226659_2228072_+	TIGR01479, Mannose-1-phosphate_guanylyltransferase, mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	NA|309aa|down_4|NZ_CP041614.1_2231974_2232901_+	cd05239, GDP_FS_SDR_e, GDP-fucose synthetase, extended (e) SDRs	NA|391aa|down_5|NZ_CP041614.1_2232893_2234066_+	cd00616, AHBA_syn, 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)	NA|478aa|down_6|NZ_CP041614.1_2234170_2235604_+	COG2244, RfbX, Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]	NA|342aa|down_7|NZ_CP041614.1_2235600_2236626_+	pfam00852, Glyco_transf_10, Glycosyltransferase family 10 (fucosyltransferase) C-term	NA|340aa|down_8|NZ_CP041614.1_2236625_2237645_+	pfam13524, Glyco_trans_1_2, Glycosyl transferases group 1	NA|489aa|down_9|NZ_CP041614.1_2237634_2239101_+	NA
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	9	2297369-2297464	9	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	GTACAGATCAACTCGAAATTGAA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA,NA	NA|708aa|up_9|NZ_CP041614.1_2277142_2279266_-	pfam02397, Bac_transf, Bacterial sugar transferase	NA|348aa|up_8|NZ_CP041614.1_2279467_2280511_-	pfam00535, Glycos_transf_2, Glycosyl transferase family 2	NA|527aa|up_7|NZ_CP041614.1_2280500_2282081_-	cd13127, MATE_tuaB_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins	NA|114aa|up_6|NZ_CP041614.1_2282710_2283052_-	cd07043, STAS_anti-anti-sigma_factors, Sulphate Transporter and Anti-Sigma factor antagonist) domain of anti-anti-sigma factors, key regulators of anti-sigma factors by phosphorylation	NA|130aa|up_5|NZ_CP041614.1_2283541_2283931_-	pfam13581, HATPase_c_2, Histidine kinase-like ATPase domain	NA|293aa|up_4|NZ_CP041614.1_2285673_2286552_+	pfam12974, Phosphonate-bd, ABC transporter, phosphonate, periplasmic substrate-binding protein	NA|501aa|up_3|NZ_CP041614.1_2290226_2291729_+	COG2204, AtoC, Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]	NA|252aa|up_2|NZ_CP041614.1_2291788_2292544_+	PRK09248, PRK09248, putative hydrolase; Validated	NA|297aa|up_1|NZ_CP041614.1_2295590_2296481_+	PRK09557, PRK09557, fructokinase; Reviewed	NA|248aa|up_0|NZ_CP041614.1_2296554_2297298_+	PRK10494, PRK10494, envelope biogenesis factor ElyC	NA|140aa|down_0|NZ_CP041614.1_2298187_2298607_-	pfam04519, Bactofilin, Polymer-forming cytoskeletal	NA|162aa|down_1|NZ_CP041614.1_2298741_2299227_-	cd10564, NapF_like, NapF, iron-sulfur subunit of periplasmic nitrate reductase	NA|338aa|down_2|NZ_CP041614.1_2299311_2300325_-	PLN02240, PLN02240, UDP-glucose 4-epimerase	NA|266aa|down_3|NZ_CP041614.1_2301613_2302411_+	PRK11913, phhA, phenylalanine 4-monooxygenase; Reviewed	NA|113aa|down_4|NZ_CP041614.1_2302507_2302846_+	PRK00823, phhB, pterin-4-alpha-carbinolamine dehydratase; Validated	NA|513aa|down_5|NZ_CP041614.1_2303068_2304607_+	PRK10820, PRK10820, transcriptional regulator TyrR	NA|329aa|down_6|NZ_CP041614.1_2304858_2305845_+	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism]	NA|219aa|down_7|NZ_CP041614.1_2305940_2306597_+	TIGR01262, Maleylacetoacetate_isomerase, maleylacetoacetate isomerase	NA|114aa|down_8|NZ_CP041614.1_2306689_2307031_-	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones]	NA|296aa|down_9|NZ_CP041614.1_2307139_2308027_-	COG0583, LysR, Transcriptional regulator [Transcription]
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	10	2443132-2443243	10	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	TACTCACTCACTCACTAGCTAGAGTAACCAAGC	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA,NA|97aa|down_1|NZ_CP041614.1_2448284_2448575_+,NA|118aa|down_9|NZ_CP041614.1_2454940_2455294_-	NA|124aa|up_9|NZ_CP041614.1_2429861_2430233_-	pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3	NA|144aa|up_8|NZ_CP041614.1_2430440_2430872_-	cd04629, CBS_pair_bac, Two tandem repeats of the cystathionine beta-synthase (CBS pair) domains present in bacteria	NA|231aa|up_7|NZ_CP041614.1_2431168_2431861_+	COG3226, COG3226, Uncharacterized protein conserved in bacteria [Function unknown]	NA|323aa|up_6|NZ_CP041614.1_2431922_2432891_-	TIGR01139, Cysteine_synthase, cysteine synthase A	NA|159aa|up_5|NZ_CP041614.1_2436010_2436487_-	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein	NA|235aa|up_4|NZ_CP041614.1_2436613_2437318_-	TIGR02001, gcw_chp, conserved hypothetical protein, proteobacterial	NA|406aa|up_3|NZ_CP041614.1_2437347_2438565_-	COG1292, BetT, Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]	NA|567aa|up_2|NZ_CP041614.1_2438817_2440518_-	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|488aa|up_1|NZ_CP041614.1_2440521_2441985_-	PRK13252, PRK13252, betaine aldehyde dehydrogenase; Provisional	NA|202aa|up_0|NZ_CP041614.1_2441975_2442581_-	PRK00767, PRK00767, transcriptional regulator BetI; Validated	NA|729aa|down_0|NZ_CP041614.1_2445959_2448146_+	TIGR03549, TIGR03549, YcaO domain protein	NA|97aa|down_1|NZ_CP041614.1_2448284_2448575_+	NA	NA|184aa|down_2|NZ_CP041614.1_2448737_2449289_+	COG0664, Crp, cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases [Signal transduction mechanisms]	NA|157aa|down_3|NZ_CP041614.1_2449348_2449819_+	COG2153, ElaA, Predicted acyltransferase [General function prediction only]	NA|288aa|down_4|NZ_CP041614.1_2449818_2450682_+	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]	NA|153aa|down_5|NZ_CP041614.1_2450745_2451204_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|180aa|down_6|NZ_CP041614.1_2451696_2452236_+	COG5006, rhtA, Threonine/homoserine efflux transporter [Amino acid transport and metabolism]	NA|276aa|down_7|NZ_CP041614.1_2452389_2453217_-	pfam01569, PAP2, PAP2 superfamily	NA|118aa|down_8|NZ_CP041614.1_2453809_2454163_+	pfam03692, CxxCxxCC, Putative zinc- or iron-chelating domain	NA|118aa|down_9|NZ_CP041614.1_2454940_2455294_-	NA
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	11	4021589-4021694	11	CRISPRCasFinder	no	cas3	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Unclear	ACAATAAACGACTCATGAAGCTTCAC	26	0	0	NA	NA	NA	1	1	Unclear	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|120aa|up_8|NZ_CP041614.1_4002274_4002634_-,NA|198aa|down_1|NZ_CP041614.1_4023822_4024416_+,NA|258aa|down_9|NZ_CP041614.1_4034372_4035146_+	NA|431aa|up_9|NZ_CP041614.1_4000022_4001315_+	PRK05614, gltA, citrate synthase	NA|120aa|up_8|NZ_CP041614.1_4002274_4002634_-	NA	NA|357aa|up_7|NZ_CP041614.1_4003040_4004111_+	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit	NA|1090aa|up_6|NZ_CP041614.1_4004123_4007393_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|1019aa|up_5|NZ_CP041614.1_4007389_4010446_+	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms]	NA|241aa|up_4|NZ_CP041614.1_4013344_4014067_-	TIGR03724, Probable_serine/threonine-protein_kinase, Kae1-associated kinase Bud32	NA|60aa|up_3|NZ_CP041614.1_4014253_4014433_-	COG2835, COG2835, Uncharacterized conserved protein [Function unknown]	NA|341aa|up_2|NZ_CP041614.1_4014422_4015445_-	PRK00652, lpxK, tetraacyldisaccharide 4'-kinase; Reviewed	NA|607aa|up_1|NZ_CP041614.1_4015448_4017269_-	PRK11176, PRK11176, lipid A ABC transporter ATP-binding protein/permease MsbA	NA|171aa|up_0|NZ_CP041614.1_4019635_4020148_+	pfam09835, DUF2062, Uncharacterized protein conserved in bacteria (DUF2062)	NA|411aa|down_0|NZ_CP041614.1_4022492_4023725_-	TIGR02212, releasing_system_transmembrane_protein_lolC	NA|198aa|down_1|NZ_CP041614.1_4023822_4024416_+	NA	cas3|1162aa|down_2|NZ_CP041614.1_4024491_4027977_+	PRK10689, PRK10689, transcription-repair coupling factor; Provisional	NA|318aa|down_3|NZ_CP041614.1_4027966_4028920_+	pfam10972, CsiV, Peptidoglycan-binding protein, CsiV	NA|92aa|down_4|NZ_CP041614.1_4029013_4029289_-	PRK14429, PRK14429, acylphosphatase; Provisional	NA|180aa|down_5|NZ_CP041614.1_4029703_4030243_-	PRK04940, PRK04940, hypothetical protein; Provisional	NA|337aa|down_6|NZ_CP041614.1_4030339_4031350_-	PRK05337, PRK05337, beta-hexosaminidase; Provisional	NA|459aa|down_7|NZ_CP041614.1_4031701_4033078_+	TIGR00720, hypothetical_protein_NEICINOT_00681, L-serine dehydratase, iron-sulfur-dependent, single chain form	NA|325aa|down_8|NZ_CP041614.1_4033171_4034146_-	PRK12681, cysB, HTH-type transcriptional regulator CysB	NA|258aa|down_9|NZ_CP041614.1_4034372_4035146_+	NA
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	12	4468616-4468714	12	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	CCCTCTTACACCATCCCTGGTGTCCGGGGATAACT	35	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|222aa|up_9|NZ_CP041614.1_4455565_4456231_+,NA|64aa|up_7|NZ_CP041614.1_4457653_4457845_-,NA|132aa|up_1|NZ_CP041614.1_4466637_4467033_+,NA	NA|222aa|up_9|NZ_CP041614.1_4455565_4456231_+	NA	NA|290aa|up_8|NZ_CP041614.1_4456797_4457667_+	pfam00497, SBP_bac_3, Bacterial extracellular solute-binding proteins, family 3	NA|64aa|up_7|NZ_CP041614.1_4457653_4457845_-	NA	NA|185aa|up_6|NZ_CP041614.1_4457998_4458553_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain	NA|427aa|up_5|NZ_CP041614.1_4459119_4460400_-	TIGR02334, conserved_hypothetical_protein, probable AcnD-accessory protein PrpF	NA|874aa|up_4|NZ_CP041614.1_4460607_4463229_-	TIGR02333, 2-methyl_citrate_dehydratase_Fe-S_dependent_AcnD, 2-methylisocitrate dehydratase, Fe/S-dependent	NA|375aa|up_3|NZ_CP041614.1_4463303_4464428_-	PRK12351, PRK12351, methylcitrate synthase; Provisional	NA|293aa|up_2|NZ_CP041614.1_4464605_4465484_-	PRK11320, prpB, 2-methylisocitrate lyase; Provisional	NA|132aa|up_1|NZ_CP041614.1_4466637_4467033_+	NA	NA|454aa|up_0|NZ_CP041614.1_4467178_4468540_+	cd00433, Peptidase_M17, Cytosol aminopeptidase family, N-terminal and catalytic domains	NA|531aa|down_0|NZ_CP041614.1_4468796_4470389_-	PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional	NA|758aa|down_1|NZ_CP041614.1_4470587_4472861_-	cd02094, P-type_ATPase_Cu-like, P-type heavy metal-transporting ATPase, similar to human copper-transporting ATPases, ATP7A and ATP7B	NA|128aa|down_2|NZ_CP041614.1_4473077_4473461_+	cd01108, HTH_CueR, Helix-Turn-Helix DNA binding domain of CueR-like transcription regulators	NA|691aa|down_3|NZ_CP041614.1_4473543_4475616_-	COG1506, DAP2, Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]	NA|253aa|down_4|NZ_CP041614.1_4476087_4476846_-	PRK08217, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional	NA|307aa|down_5|NZ_CP041614.1_4476850_4477771_-	TIGR01692, 3-hydroxyisobutyrate_dehydrogenase_mitochondrial, 3-hydroxyisobutyrate dehydrogenase	NA|380aa|down_6|NZ_CP041614.1_4477824_4478964_-	pfam16113, ECH_2, Enoyl-CoA hydratase/isomerase	NA|386aa|down_7|NZ_CP041614.1_4479761_4480919_-	cd01162, IBD, Isobutyryl-CoA dehydrogenase	NA|502aa|down_8|NZ_CP041614.1_4481069_4482575_-	cd07085, ALDH_F6_MMSDH, Methylmalonate semialdehyde dehydrogenase and ALDH family members 6A1 and 6B2	NA|397aa|down_9|NZ_CP041614.1_4482805_4483996_-	PRK06954, PRK06954, acetyl-CoA C-acetyltransferase
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	13	4503215-4503328	13	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	TAAGAGTCATGCTGACGAATATCTGCT	27	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|136aa|up_8|NZ_CP041614.1_4493708_4494116_-,NA|111aa|up_7|NZ_CP041614.1_4494299_4494632_-,NA|88aa|down_5|NZ_CP041614.1_4509816_4510080_-	NA|507aa|up_9|NZ_CP041614.1_4491863_4493384_+	pfam00665, rve, Integrase core domain	NA|136aa|up_8|NZ_CP041614.1_4493708_4494116_-	NA	NA|111aa|up_7|NZ_CP041614.1_4494299_4494632_-	NA	NA|256aa|up_6|NZ_CP041614.1_4494708_4495476_+	cd05350, SDR_c6, classical (c) SDR, subgroup 6	NA|215aa|up_5|NZ_CP041614.1_4495602_4496247_-	PRK10959, PRK10959, outer membrane protein W; Provisional	NA|164aa|up_4|NZ_CP041614.1_4496556_4497048_-	pfam06042, NTP_transf_6, Nucleotidyltransferase	NA|737aa|up_3|NZ_CP041614.1_4497180_4499391_-	COG3459, COG3459, Cellobiose phosphorylase [Carbohydrate transport and metabolism]	NA|132aa|up_2|NZ_CP041614.1_4499586_4499982_-	pfam09619, YscW, Type III secretion system lipoprotein chaperone (YscW)	NA|289aa|up_1|NZ_CP041614.1_4500046_4500913_-	PRK10526, PRK10526, acyl-CoA thioesterase II; Provisional	NA|302aa|up_0|NZ_CP041614.1_4501108_4502014_-	cd05353, hydroxyacyl-CoA-like_DH_SDR_c-like, (3R)-hydroxyacyl-CoA dehydrogenase-like, classical(c)-like SDRs	NA|80aa|down_0|NZ_CP041614.1_4503378_4503618_+	pfam12292, DUF3624, Protein of unknown function (DUF3624)	NA|459aa|down_1|NZ_CP041614.1_4503628_4505005_-	sd00033, LRR_RI, leucine-rich repeats, ribonuclease inhibitor (RI)-like subfamily	NA|144aa|down_2|NZ_CP041614.1_4505087_4505519_-	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain	NA|759aa|down_3|NZ_CP041614.1_4505770_4508047_+	COG0826, COG0826, Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]	NA|247aa|down_4|NZ_CP041614.1_4508222_4508963_+	cd03196, GST_C_5, C-terminal, alpha helical domain of an unknown subfamily 5 of Glutathione S-transferases	NA|88aa|down_5|NZ_CP041614.1_4509816_4510080_-	NA	NA|347aa|down_6|NZ_CP041614.1_4510413_4511454_+	pfam03781, FGE-sulfatase, Sulfatase-modifying factor enzyme 1	NA|850aa|down_7|NZ_CP041614.1_4511463_4514013_-	cd00118, LysM, Lysin Motif is a small domain involved in binding peptidoglycan	NA|209aa|down_8|NZ_CP041614.1_4514027_4514654_-	pfam13503, DUF4123, Domain of unknown function (DUF4123)	NA|696aa|down_9|NZ_CP041614.1_4514632_4516720_-	TIGR03361, VI_Rhs_Vgr, type VI secretion system Vgr family protein
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	14	4839597-4839708	14	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	ACGTCAGCTCTTAAGAAAGATGATGAAATC	30	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|275aa|up_5|NZ_CP041614.1_4833313_4834138_+,NA|106aa|down_1|NZ_CP041614.1_4841152_4841470_+,NA|368aa|down_5|NZ_CP041614.1_4843205_4844309_-	NA|477aa|up_9|NZ_CP041614.1_4827697_4829128_-	pfam02028, BCCT, BCCT, betaine/carnitine/choline family transporter	NA|123aa|up_8|NZ_CP041614.1_4829305_4829674_-	COG1607, COG1607, Acyl-CoA hydrolase [Lipid metabolism]	NA|502aa|up_7|NZ_CP041614.1_4830061_4831567_+	smart00098, alkPPc, Alkaline phosphatase homologues	NA|544aa|up_6|NZ_CP041614.1_4831594_4833226_+	smart00098, alkPPc, Alkaline phosphatase homologues	NA|275aa|up_5|NZ_CP041614.1_4833313_4834138_+	NA	NA|337aa|up_4|NZ_CP041614.1_4834262_4835273_-	PRK10534, PRK10534, L-threonine aldolase; Provisional	NA|211aa|up_3|NZ_CP041614.1_4835644_4836277_+	COG2860, COG2860, Predicted membrane protein [Function unknown]	NA|281aa|up_2|NZ_CP041614.1_4836472_4837315_-	PRK10334, PRK10334, small-conductance mechanosensitive channel MscS	NA|191aa|up_1|NZ_CP041614.1_4837467_4838040_-	cd07185, OmpA_C-like, Peptidoglycan binding domains similar to the C-terminal domain of outer-membrane protein OmpA	NA|139aa|up_0|NZ_CP041614.1_4838251_4838668_-	COG4125, COG4125, Predicted membrane protein [Function unknown]	NA|187aa|down_0|NZ_CP041614.1_4840398_4840959_-	pfam13590, DUF4136, Domain of unknown function (DUF4136)	NA|106aa|down_1|NZ_CP041614.1_4841152_4841470_+	NA	NA|110aa|down_2|NZ_CP041614.1_4841672_4842002_+	PRK09019, PRK09019, stress response translation initiation inhibitor YciH	NA|187aa|down_3|NZ_CP041614.1_4842070_4842631_+	PRK00228, PRK00228, YqgE/AlgH family protein	NA|141aa|down_4|NZ_CP041614.1_4842673_4843096_+	PRK00109, PRK00109, Holliday junction resolvase RuvX	NA|368aa|down_5|NZ_CP041614.1_4843205_4844309_-	NA	NA|346aa|down_6|NZ_CP041614.1_4845612_4846650_-	COG2805, PilT, Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]	NA|232aa|down_7|NZ_CP041614.1_4846686_4847382_+	cd06824, PLPDE_III_Yggs_like, Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Yggs-like proteins	NA|273aa|down_8|NZ_CP041614.1_4847511_4848330_+	PRK11880, PRK11880, pyrroline-5-carboxylate reductase; Reviewed	NA|183aa|down_9|NZ_CP041614.1_4848389_4848938_+	pfam02325, YGGT, YGGT family
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	15	5300109-5300205	15	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	ATAATACGTGCGGTATAGAATTA	23	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA,NA|90aa|down_3|NZ_CP041614.1_5305148_5305418_+	NA|228aa|up_9|NZ_CP041614.1_5286601_5287285_+	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional	NA|274aa|up_8|NZ_CP041614.1_5287301_5288123_-	cd13704, PBP2_HisK, The periplasmic sensor domain of histidine kinase receptors; the type 2 periplasmic binding fold protein	NA|164aa|up_7|NZ_CP041614.1_5288409_5288901_+	pfam04170, NlpE, NlpE N-terminal domain	NA|935aa|up_6|NZ_CP041614.1_5289012_5291817_-	pfam01752, Peptidase_M9, Collagenase	NA|223aa|up_5|NZ_CP041614.1_5292184_5292853_-	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional	NA|193aa|up_4|NZ_CP041614.1_5292988_5293567_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|175aa|up_3|NZ_CP041614.1_5293672_5294197_+	COG2165, PulG, Type II secretory pathway, pseudopilin PulG [Cell motility and secretion / Intracellular trafficking and secretion]	NA|112aa|up_2|NZ_CP041614.1_5294439_5294775_+	pfam11342, DUF3144, Protein of unknown function (DUF3144)	NA|205aa|up_1|NZ_CP041614.1_5294827_5295442_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|832aa|up_0|NZ_CP041614.1_5295689_5298185_-	cd01347, ligand_gated_channel, TonB dependent/Ligand-Gated channels are created by a monomeric 22 strand (22,24) anti-parallel beta-barrel	NA|499aa|down_0|NZ_CP041614.1_5300384_5301881_+	TIGR02745, iron-sulfur_cluster-binding_protein, cytochrome c oxidase accessory protein FixG	NA|533aa|down_1|NZ_CP041614.1_5302161_5303760_+	PRK05677, PRK05677, long-chain-fatty-acid--CoA ligase; Validated	NA|269aa|down_2|NZ_CP041614.1_5303808_5304615_-	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|90aa|down_3|NZ_CP041614.1_5305148_5305418_+	NA	NA|339aa|down_4|NZ_CP041614.1_5305887_5306904_-	COG3547, COG3547, Transposase and inactivated derivatives [DNA replication, recombination, and repair]	NA|144aa|down_5|NZ_CP041614.1_5307105_5307537_-	pfam09391, DUF2000, Protein of unknown function (DUF2000)	NA|148aa|down_6|NZ_CP041614.1_5307661_5308105_+	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|623aa|down_7|NZ_CP041614.1_5308539_5310408_-	TIGR02204, system_ATPase_and_permease_component, ABC transporter, permease/ATP-binding protein	NA|200aa|down_8|NZ_CP041614.1_5310621_5311221_-	TIGR04110, hypothetical_protein_VSWAT3_12502, heme utilization protein HutZ	NA|177aa|down_9|NZ_CP041614.1_5311312_5311843_-	TIGR04108, Heme_utilization_protein_HuvX, putative heme utilization carrier protein HutX
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	16	5423383-5423483	16	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	CAGATTACCTCAGCAATTCATAGCAA	26	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|104aa|up_9|NZ_CP041614.1_5412956_5413268_-,NA|123aa|down_8|NZ_CP041614.1_5432121_5432490_-	NA|104aa|up_9|NZ_CP041614.1_5412956_5413268_-	NA	NA|192aa|up_8|NZ_CP041614.1_5413873_5414449_-	pfam00072, Response_reg, Response regulator receiver domain	NA|426aa|up_7|NZ_CP041614.1_5414642_5415920_-	PRK05015, PRK05015, aminopeptidase B; Provisional	NA|239aa|up_6|NZ_CP041614.1_5416044_5416761_+	PRK00347, PRK00347, DNA/RNA nuclease SfsA	NA|148aa|up_5|NZ_CP041614.1_5416920_5417364_+	PRK10778, dksA, RNA polymerase-binding protein DksA	NA|291aa|up_4|NZ_CP041614.1_5417501_5418374_+	PRK05710, PRK05710, tRNA glutamyl-Q(34) synthetase GluQRS	NA|457aa|up_3|NZ_CP041614.1_5418598_5419969_+	TIGR01942, pcnB, poly(A) polymerase	NA|164aa|up_2|NZ_CP041614.1_5419968_5420460_+	cd00483, HPPK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK)	NA|265aa|up_1|NZ_CP041614.1_5420545_5421340_+	PRK00311, panB, 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed	NA|282aa|up_0|NZ_CP041614.1_5421493_5422339_+	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed	NA|257aa|down_0|NZ_CP041614.1_5423918_5424689_-	PRK15066, PRK15066, inner membrane transport permease; Provisional	NA|177aa|down_1|NZ_CP041614.1_5425923_5426454_-	COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]	NA|221aa|down_2|NZ_CP041614.1_5426495_5427158_-	PRK05920, PRK05920, aromatic acid decarboxylase; Validated	NA|472aa|down_3|NZ_CP041614.1_5427210_5428626_-	TIGR01081, mpl, UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	NA|264aa|down_4|NZ_CP041614.1_5428827_5429619_+	pfam03649, UPF0014, Uncharacterized protein family (UPF0014)	NA|206aa|down_5|NZ_CP041614.1_5429686_5430304_-	cd01012, YcaC_related, YcaC related amidohydrolases; E	NA|225aa|down_6|NZ_CP041614.1_5430397_5431072_-	COG1741, COG1741, Pirin-related protein [General function prediction only]	NA|296aa|down_7|NZ_CP041614.1_5431225_5432113_+	cd08422, PBP2_CrgA_like, The C-terminal substrate binding domain of LysR-type transcriptional regulator CrgA and its related homologs, contains the type 2 periplasmic binding domain	NA|123aa|down_8|NZ_CP041614.1_5432121_5432490_-	NA	NA|272aa|down_9|NZ_CP041614.1_5432599_5433415_-	pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain
GCF_007197555.1_ASM719755v1	NZ_CP041614	Shewanella sp. YLB-06 chromosome, complete genome	17	6412898-6413016	17	CRISPRCasFinder	no		csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	Orphan	ACACATGAGCATAGATGATAAACAGGAAAAAGT	33	0	0	NA	NA	NA	1	1	Orphan	csa3,DEDDh,cas3,cas2,RT,DinG,WYL,cas3HD	NA|186aa|up_2|NZ_CP041614.1_6408055_6408613_+,NA|70aa|down_4|NZ_CP041614.1_6417691_6417901_+,NA|69aa|down_9|NZ_CP041614.1_6425700_6425907_-	NA|265aa|up_9|NZ_CP041614.1_6400150_6400945_-	PRK05815, PRK05815, F0F1 ATP synthase subunit A; Validated	NA|296aa|up_8|NZ_CP041614.1_6401563_6402451_-	TIGR04285, parB-like_partition_protein, nucleoid occlusion protein	NA|263aa|up_7|NZ_CP041614.1_6402466_6403255_-	COG1192, Soj, ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]	NA|207aa|up_6|NZ_CP041614.1_6403330_6403951_-	PRK00107, gidB, 16S rRNA (guanine(527)-N(7))-methyltransferase RsmG	NA|631aa|up_5|NZ_CP041614.1_6404071_6405964_-	PRK05192, PRK05192, tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	NA|147aa|up_4|NZ_CP041614.1_6406422_6406863_-	PRK09004, PRK09004, FMN-binding protein MioC; Provisional	NA|263aa|up_3|NZ_CP041614.1_6407057_6407846_-	PRK05134, PRK05134, bifunctional 2-polyprenyl-6-hydroxyphenol methylase/3-demethylubiquinol 3-O-methyltransferase UbiG	NA|186aa|up_2|NZ_CP041614.1_6408055_6408613_+	NA	NA|493aa|up_1|NZ_CP041614.1_6408861_6410340_+	COG1622, CyoA, Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]	NA|227aa|up_0|NZ_CP041614.1_6412186_6412867_+	cd02865, Heme_Cu_Oxidase_III_2, Heme-copper oxidase subunit III subfamily	NA|120aa|down_0|NZ_CP041614.1_6413822_6414182_+	COG5605, COG5605, Predicted small integral membrane protein [Function unknown]	NA|231aa|down_1|NZ_CP041614.1_6414298_6414991_+	cd02968, SCO, SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold	NA|324aa|down_2|NZ_CP041614.1_6415106_6416078_+	cd02650, nuc_hydro_CaPnhB, NH_hydro_CaPnhB: A subgroup of nucleoside hydrolases similar to Corynebacterium ammoniagenes Purine/pyrimidine nucleoside hydrolase (pnhB)	NA|215aa|down_3|NZ_CP041614.1_6416152_6416797_-	COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]	NA|70aa|down_4|NZ_CP041614.1_6417691_6417901_+	NA	NA|417aa|down_5|NZ_CP041614.1_6418287_6419538_+	COG3214, COG3214, Uncharacterized protein conserved in bacteria [Function unknown]	NA|329aa|down_6|NZ_CP041614.1_6419633_6420620_+	PRK10396, PRK10396, hypothetical protein; Provisional	NA|1056aa|down_7|NZ_CP041614.1_6420986_6424154_-	COG1061, SSL2, DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]	NA|366aa|down_8|NZ_CP041614.1_6424445_6425543_-	COG3177, COG3177, Fic family protein [Function unknown]	NA|69aa|down_9|NZ_CP041614.1_6425700_6425907_-	NA
