The following contents displays predicted prophage regions
first line of each prophage describes the prophage information and the following lines describe the proteins and homology proteins in uniprot database
bacteria_id bac_def genome_size prophage_start  prophage_end    key_proteins    best_hit_species    CDS_number  attl_region attr_region
>prophage 1
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	0	58680	3035735	portal,head,integrase,terminase,tail,holin,protease	Lactobacillus_phage(76.09%)	66	17479:17494	50023:50038
WP_012491332.1|62_446_-	hypothetical protein	NA	A0A1B0YC24	Lactobacillus_phage	100.0	2.6e-68
WP_143959121.1|435_765_-	hypothetical protein	NA	A0A1B0Y3M9	Lactobacillus_phage	98.2	9.9e-56
WP_143959122.1|748_1084_-|head	phage head closure protein	head	A0A0N7IRA3	Lactobacillus_phage	97.3	3.8e-55
WP_003582271.1|1022_1349_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1B0Y2R7	Lactobacillus_phage	100.0	7.0e-54
WP_012491330.1|1362_1611_-	hypothetical protein	NA	A0A1B0Y2R9	Lactobacillus_phage	100.0	7.0e-38
WP_012491328.1|2916_3624_-|protease	Clp protease ClpP	protease	A0A1B0Y857	Lactobacillus_phage	100.0	1.4e-128
WP_012491327.1|3601_4837_-|portal	phage portal protein	portal	A0A1B0Y4Q9	Lactobacillus_phage	100.0	1.2e-234
WP_012491326.1|4855_6586_-|terminase	terminase large subunit	terminase	A0A1B0Y6B8	Lactobacillus_phage	100.0	0.0e+00
WP_003582259.1|6588_6963_-	hypothetical protein	NA	A0A1B0YE76	Lactobacillus_phage	100.0	3.6e-62
WP_012491324.1|7031_7412_-	HNH endonuclease	NA	A0A1B0YEC6	Lactobacillus_phage	100.0	1.5e-71
WP_012491323.1|7576_7981_-	transcriptional regulator	NA	A0A1B0YC57	Lactobacillus_phage	100.0	9.3e-72
WP_012491322.1|7977_8232_-	hypothetical protein	NA	A0A1B0Y3N3	Lactobacillus_phage	100.0	2.3e-44
WP_012491321.1|8218_8806_-	HNH endonuclease	NA	A0A1B0Y2T0	Lactobacillus_phage	100.0	9.9e-107
WP_014951787.1|8798_9146_-	hypothetical protein	NA	A0A1B0Y2S9	Lactobacillus_phage	99.1	2.2e-58
WP_012491319.1|9114_9399_-	hypothetical protein	NA	A0A1B0Y2T1	Lactobacillus_phage	100.0	6.8e-45
WP_012491318.1|9405_9720_-	VRR-NUC domain-containing protein	NA	A0A1B0YA93	Lactobacillus_phage	100.0	1.4e-54
WP_012491317.1|9994_11230_-	helicase	NA	A0A1B0Y896	Lactobacillus_phage	100.0	1.1e-237
WP_012491316.1|11234_12032_-	bifunctional DNA primase/polymerase	NA	A0A1B0Y4T1	Lactobacillus_phage	100.0	1.4e-151
WP_012491315.1|12098_12608_-	hypothetical protein	NA	A0A1B0Y6E2	Lactobacillus_phage	100.0	4.1e-93
WP_012491314.1|12610_13351_-	AAA family ATPase	NA	A0A1B0YEB5	Lactobacillus_phage	100.0	4.1e-134
WP_012491313.1|13352_14720_-	DEAD/DEAH box helicase	NA	A0A1B0YC45	Lactobacillus_phage	100.0	1.6e-264
WP_012491312.1|14719_14950_-	hypothetical protein	NA	A0A1B0Y3N2	Lactobacillus_phage	100.0	3.0e-35
WP_012491311.1|14961_15456_-	siphovirus Gp157 family protein	NA	A0A1B0Y2S7	Lactobacillus_phage	100.0	9.9e-84
WP_012491310.1|15460_15700_-	hypothetical protein	NA	A0A1B0Y2S6	Lactobacillus_phage	100.0	7.7e-34
WP_012491309.1|15713_15905_-	hypothetical protein	NA	A0A1B0Y2S8	Lactobacillus_phage	100.0	6.4e-31
WP_012491308.1|15965_16277_+	hypothetical protein	NA	A0A1B0YA89	Lactobacillus_phage	100.0	8.2e-52
WP_012491305.1|16544_16868_-	DUF771 domain-containing protein	NA	A0A1B0Y6D5	Lactobacillus_phage	100.0	1.2e-58
WP_012491304.1|16899_17673_-	ORF6N domain-containing protein	NA	A0A1B0YEA7	Lactobacillus_phage	100.0	1.3e-143
17479:17494	attL	ATCTTTGACTTGGTCC	NA	NA	NA	NA
WP_012491303.1|17675_17888_-	helix-turn-helix transcriptional regulator	NA	A0A1B0YC38	Lactobacillus_phage	100.0	3.7e-32
WP_012491302.1|18144_18471_+	helix-turn-helix transcriptional regulator	NA	A0A1B0Y3N1	Lactobacillus_phage	100.0	3.4e-56
WP_012491301.1|18467_18872_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A1B0Y2S4	Lactobacillus_phage	100.0	2.1e-76
WP_012491300.1|18943_19723_+	ion transporter	NA	A0A1B0Y2S3	Lactobacillus_phage	100.0	9.1e-116
WP_012491299.1|19978_20209_-	hypothetical protein	NA	U5U783	Lactobacillus_phage	100.0	7.2e-37
WP_012491298.1|20227_20989_+	hypothetical protein	NA	A0A1B0YA83	Lactobacillus_phage	100.0	1.2e-144
WP_012491297.1|21099_22251_+|integrase	site-specific integrase	integrase	Q8W767	Lactobacillus_phage	100.0	2.2e-219
WP_003564255.1|22655_23246_-	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	NA	A0A223W000	Agrobacterium_phage	52.3	1.1e-52
WP_003564253.1|23362_23818_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012491296.1|24203_25151_-	DNA-binding protein WhiA	NA	Q7AWZ3	Streptococcus_phage	40.7	9.2e-54
WP_003564250.1|25155_26184_-	uridine diphosphate-N-acetylglucosamine-binding protein YvcK	NA	A1IMD5	Streptococcus_phage	51.2	2.3e-90
WP_003564248.1|26180_27068_-	RNase adapter RapZ	NA	A0A0R8VB27	Thermobifida_phage	31.4	1.1e-08
WP_003564246.1|27230_27770_-	DUF308 domain-containing protein	NA	NA	NA	NA	NA
WP_012491295.1|28121_31013_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	56.2	1.9e-307
WP_003578292.1|31280_33296_-	excinuclease ABC subunit UvrB	NA	NA	NA	NA	NA
WP_003564240.1|33501_34149_-	HD domain-containing protein	NA	NA	NA	NA	NA
WP_014566756.1|34306_36673_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_014566477.1|37443_38454_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_003569557.1|38446_39094_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_012491290.1|39328_41056_-	phospho-sugar mutase	NA	A0A1X9I671	Streptococcus_phage	54.9	3.3e-182
WP_012491289.1|41639_42593_-	thioredoxin-disulfide reductase	NA	G3MA85	Bacillus_virus	47.9	8.9e-81
WP_003583985.1|42658_43714_-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA	NA
WP_003578277.1|43724_44552_-	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA	NA
WP_003564222.1|44553_45513_-	HPr kinase/phosphorylase	NA	NA	NA	NA	NA
WP_003564220.1|45704_46040_-|holin	phage holin family protein	holin	NA	NA	NA	NA
WP_003564219.1|46039_46309_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003564216.1|46320_47802_-	daptomycin-sensing surface protein LiaX	NA	NA	NA	NA	NA
WP_003569545.1|48221_48899_-	phosphate signaling complex protein PhoU	NA	NA	NA	NA	NA
WP_003578265.1|48909_49674_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.1	4.2e-17
WP_003564210.1|49683_50502_-	phosphate ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.5	4.0e-13
50023:50038	attR	ATCTTTGACTTGGTCC	NA	NA	NA	NA
WP_012491288.1|50581_51466_-	phosphate ABC transporter permease PstA	NA	NA	NA	NA	NA
WP_003564205.1|51462_52386_-	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA	NA
WP_012491287.1|52526_53387_-	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_003564201.1|53489_55157_-	PAS domain-containing protein	NA	Q8QNA2	Ectocarpus_siliculosus_virus	27.8	1.2e-11
WP_003564199.1|55149_55857_-	response regulator transcription factor	NA	NA	NA	NA	NA
WP_003564197.1|55853_56957_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_014566476.1|57116_58004_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012491286.1|57993_58680_-	cell division ATP-binding protein FtsE	NA	G9BWD6	Planktothrix_phage	30.4	8.5e-25
>prophage 2
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	64049	69018	3035735		Streptococcus_phage(66.67%)	4	NA	NA
WP_016379935.1|64049_65312_-	DEAD/DEAH box helicase family protein	NA	A0A1X9I5S6	Streptococcus_phage	38.6	5.1e-60
WP_012491283.1|65339_65990_+	YigZ family protein	NA	A0A1X9I5T8	Streptococcus_phage	43.3	1.2e-41
WP_003657913.1|66083_67655_-	ribonuclease Y	NA	NA	NA	NA	NA
WP_003598111.1|67956_69018_-	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	65.9	8.0e-123
>prophage 3
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	75584	136936	3035735	portal,tRNA,head,holin,terminase,tail,capsid,integrase,protease,transposase	Lactobacillus_phage(94.23%)	75	70580:70597	144505:144522
70580:70597	attL	TCGCAGTCGCAGAAACCT	NA	NA	NA	NA
WP_003604697.1|75584_77906_-	DNA translocase FtsK	NA	G1FGP1	Mycobacterium_phage	50.0	8.5e-85
WP_003564159.1|78078_78489_-	DUF1149 family protein	NA	NA	NA	NA	NA
WP_003564157.1|78615_79125_-|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	tRNA	NA	NA	NA	NA
WP_012491280.1|79379_80222_-	methyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_003564155.1|80287_81235_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_012491279.1|81462_82452_+	GMP reductase	NA	Q4ZCY7	Staphylococcus_virus	71.6	1.4e-137
WP_003564153.1|82579_82849_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_014566472.1|82960_83338_-	PTS glucitol/sorbitol transporter subunit IIA	NA	NA	NA	NA	NA
WP_012491278.1|83609_84650_+	lactonase family protein	NA	NA	NA	NA	NA
WP_014566471.1|84852_85671_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA	NA
WP_003569480.1|85692_86328_+	copper homeostasis protein CutC	NA	NA	NA	NA	NA
WP_012491276.1|86484_87543_+	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_012491275.1|87651_88554_-	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_003564146.1|88553_89351_-	NAD kinase	NA	NA	NA	NA	NA
WP_003564145.1|89352_90024_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA	NA
WP_003601679.1|90217_90811_+	CYTH domain-containing protein	NA	NA	NA	NA	NA
WP_003601677.1|90880_91516_+	DsbA family protein	NA	NA	NA	NA	NA
WP_003569473.1|91705_92761_-	competence protein	NA	NA	NA	NA	NA
WP_014951764.1|92870_94214_-	PFL family protein	NA	NA	NA	NA	NA
WP_003564140.1|94262_94529_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_012491272.1|94719_96048_+	metallophosphoesterase	NA	NA	NA	NA	NA
WP_012490951.1|96285_97284_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.4	2.5e-49
WP_003569466.1|97300_98506_-	putative C-S lyase	NA	NA	NA	NA	NA
WP_003564137.1|98972_99446_-	glutathione peroxidase	NA	NA	NA	NA	NA
WP_012491271.1|99542_101102_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_012491270.1|101129_102641_-	glycosyltransferase	NA	NA	NA	NA	NA
WP_012491268.1|103162_104137_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0P0I7S1	Lactobacillus_phage	100.0	9.1e-198
WP_012491267.1|104123_104312_-	hypothetical protein	NA	A0A0P0IQT6	Lactobacillus_phage	100.0	6.7e-25
WP_012491266.1|104311_104746_-|holin	phage holin	holin	A0A0P0IDC6	Lactobacillus_phage	100.0	7.4e-51
WP_012491265.1|104735_105029_-	hypothetical protein	NA	A0A0P0IK41	Lactobacillus_phage	100.0	4.0e-48
WP_012491264.1|105074_105344_-	hypothetical protein	NA	A0A0P0I3K6	Lactobacillus_phage	100.0	2.4e-39
WP_012491263.1|105346_105772_-	DUF1617 family protein	NA	A0A1B0Y2S1	Lactobacillus_phage	100.0	8.8e-73
WP_014566469.1|105800_110207_-|tail	phage tail protein	tail	A0A0N7IRA4	Lactobacillus_phage	100.0	0.0e+00
WP_012491261.1|110203_110899_-	hypothetical protein	NA	A0A0P0HRV6	Lactobacillus_phage	100.0	8.3e-129
WP_012491260.1|110905_113878_-	tape measure protein	NA	A0A0P0IZN3	Lactobacillus_phage	100.0	1.3e-292
WP_003582283.1|113897_114059_-	hypothetical protein	NA	A0A0P0IJV2	Lactobacillus_phage	100.0	7.5e-25
WP_012491259.1|114139_114505_-	hypothetical protein	NA	A0A0P0IXK4	Lactobacillus_phage	100.0	4.6e-62
WP_012491258.1|114581_115229_-	hypothetical protein	NA	A0A0P0I7R6	Lactobacillus_phage	100.0	1.5e-119
WP_012491257.1|115240_115624_-	hypothetical protein	NA	A0A0P0IQS9	Lactobacillus_phage	100.0	4.5e-68
WP_012491256.1|115613_115943_-	hypothetical protein	NA	A0A0P0IDB8	Lactobacillus_phage	100.0	3.1e-57
WP_012491255.1|115926_116265_-|head	phage head closure protein	head	A0A0N7IRA3	Lactobacillus_phage	100.0	2.2e-58
WP_003582271.1|116203_116530_-|head,tail	phage gp6-like head-tail connector protein	head,tail	A0A1B0Y2R7	Lactobacillus_phage	100.0	7.0e-54
WP_012491254.1|116543_116792_-	hypothetical protein	NA	A0A0P0I3K0	Lactobacillus_phage	100.0	9.1e-38
WP_012491253.1|116865_118095_-|capsid	phage major capsid protein	capsid	A0A0P0IV50	Lactobacillus_phage	100.0	7.3e-229
WP_012491252.1|118099_118807_-|protease	Clp protease ClpP	protease	A0A0P0HRU7	Lactobacillus_phage	100.0	7.2e-128
WP_143959123.1|118784_120020_-|portal	phage portal protein	portal	A0A0P0IZM3	Lactobacillus_phage	99.8	7.6e-234
WP_012491250.1|120038_121769_-|terminase	terminase large subunit	terminase	A0A0P0IJU3	Lactobacillus_phage	100.0	0.0e+00
WP_003582259.1|121771_122146_-	hypothetical protein	NA	A0A1B0YE76	Lactobacillus_phage	100.0	3.6e-62
WP_012491248.1|122215_122596_-	HNH endonuclease	NA	A0A0P0HRY0	Lactobacillus_phage	100.0	2.5e-71
WP_012491247.1|122820_123270_-	hypothetical protein	NA	A0A0P0IZR0	Lactobacillus_phage	100.0	1.2e-80
WP_012491246.1|123348_123672_-	hypothetical protein	NA	A0A0N7IRA8	Lactobacillus_phage	100.0	9.7e-56
WP_012491245.1|123695_123959_-	hypothetical protein	NA	A0A0P0IJX1	Lactobacillus_phage	100.0	6.1e-40
WP_012491244.1|123963_124386_-	RusA family crossover junction endodeoxyribonuclease	NA	A0A0P0IXM5	Lactobacillus_phage	100.0	5.5e-75
WP_012491243.1|124399_124978_-	HNH endonuclease	NA	A0A0P0I7T6	Lactobacillus_phage	100.0	1.1e-105
WP_014566751.1|124970_125318_-	hypothetical protein	NA	A0A0P0IQU7	Lactobacillus_phage	100.0	1.5e-62
WP_014566466.1|125286_125571_-	hypothetical protein	NA	A0A0P0IDD7	Lactobacillus_phage	100.0	8.8e-45
WP_012491240.1|125533_125833_-	hypothetical protein	NA	A0A0P0IK66	Lactobacillus_phage	100.0	2.1e-49
WP_012491239.1|125829_126651_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	100.0	6.1e-155
WP_012491238.1|126688_127534_-	DnaD domain protein	NA	A0A0N7IRA7	Lactobacillus_phage	100.0	1.0e-133
WP_012491237.1|127538_127784_-	helix-turn-helix transcriptional regulator	NA	A0A0P0IV68	Lactobacillus_phage	100.0	2.6e-37
WP_012491236.1|127792_128680_-	recombinase RecT	NA	A0A0P0HRX2	Lactobacillus_phage	100.0	8.6e-163
WP_012491235.1|128679_128874_-	hypothetical protein	NA	A0A0P0IZQ2	Lactobacillus_phage	100.0	2.5e-30
WP_012491234.1|128876_129752_-	YqaJ viral recombinase family protein	NA	A0A0P0IJW5	Lactobacillus_phage	100.0	1.1e-170
WP_012491233.1|129761_129974_-	hypothetical protein	NA	A0A0P0IXL9	Lactobacillus_phage	100.0	2.5e-36
WP_003657835.1|130062_130287_-	DUF771 domain-containing protein	NA	A0A0P0IQT9	Lactobacillus_phage	100.0	2.6e-39
WP_014951753.1|130395_130608_-	hypothetical protein	NA	A0A0N7IRA6	Lactobacillus_phage	100.0	7.8e-30
WP_012491231.1|130615_131338_-	Rha family transcriptional regulator	NA	A0A0P0IDD0	Lactobacillus_phage	100.0	1.4e-126
WP_003578190.1|131334_131532_-	hypothetical protein	NA	A0A0P0IK60	Lactobacillus_phage	100.0	5.2e-28
WP_012491230.1|131787_132156_+	helix-turn-helix domain-containing protein	NA	A0A0P0I3L3	Lactobacillus_phage	100.0	2.8e-59
WP_012491229.1|132142_133003_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0P0IV64	Lactobacillus_phage	100.0	2.8e-158
WP_003598059.1|133186_133480_+	hypothetical protein	NA	A0A0P0HRW5	Lactobacillus_phage	100.0	5.7e-47
WP_012491228.1|133483_133966_+	hypothetical protein	NA	A0A0P0IZP3	Lactobacillus_phage	100.0	2.1e-83
WP_003598055.1|134035_134467_+	hypothetical protein	NA	A0A0P0IJV8	Lactobacillus_phage	100.0	6.8e-73
WP_003598052.1|134611_135679_+	Abi family protein	NA	A0A0N7IRA5	Lactobacillus_phage	100.0	1.1e-207
WP_012491227.1|135796_136936_+|integrase	site-specific integrase	integrase	A0A0P0IXL3	Lactobacillus_phage	100.0	2.4e-218
144505:144522	attR	AGGTTTCTGCGACTGCGA	NA	NA	NA	NA
>prophage 4
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	141679	144091	3035735	tRNA	Staphylococcus_phage(100.0%)	1	NA	NA
WP_003578174.1|141679_144091_-|tRNA	leucine--tRNA ligase	tRNA	A0A2H4PQS0	Staphylococcus_phage	68.4	0.0e+00
>prophage 5
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	150069	151254	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003564111.1|150069_151254_-	methionine adenosyltransferase	NA	A0A2H4PQS6	Staphylococcus_phage	66.0	1.5e-141
>prophage 6
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	158773	160867	3035735		Streptococcus_phage(100.0%)	1	NA	NA
WP_012491223.1|158773_160867_-	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	46.9	6.1e-151
>prophage 7
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	180295	182632	3035735		Catovirus(33.33%)	3	NA	NA
WP_012491221.1|180295_180880_-	peptidylprolyl isomerase	NA	A0A1V0S9I2	Catovirus	41.1	2.7e-24
WP_012491220.1|181103_182090_+	NAD(P)/FAD-dependent oxidoreductase	NA	Q9JRK7	Streptococcus_phage	37.9	1.9e-17
WP_003566812.1|182128_182632_+	phosphatidylglycerophosphatase A	NA	G3MBC5	Bacillus_virus	53.4	2.1e-41
>prophage 8
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	187054	191538	3035735		Pseudomonas_phage(50.0%)	5	NA	NA
WP_014566749.1|187054_187657_-	metallophosphoesterase	NA	A0A291LAY4	Pseudomonas_phage	34.5	6.3e-16
WP_014566462.1|187658_188396_-	YibE/F family protein	NA	NA	NA	NA	NA
WP_012491215.1|188392_189460_-	YibE/F family protein	NA	NA	NA	NA	NA
WP_014566461.1|189763_189994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491213.1|190197_191538_+	glycerophosphodiester phosphodiesterase	NA	M1HE48	Acanthocystis_turfacea_Chlorella_virus	32.9	4.8e-08
>prophage 9
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	197848	198835	3035735	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_012491210.1|197848_198835_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	36.6	6.2e-45
>prophage 10
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	206188	225887	3035735	tRNA	Tupanvirus(25.0%)	19	NA	NA
WP_003564035.1|206188_206926_+	aquaporin family protein	NA	M1HWZ0	Paramecium_bursaria_Chlorella_virus	30.3	1.1e-25
WP_012491205.1|206988_207513_-	metallophosphoesterase	NA	NA	NA	NA	NA
WP_012491204.1|207509_208964_-	glutamate racemase	NA	Q66YC8	Euphorbia_ringspot_virus	29.7	2.4e-05
WP_012491203.1|209407_209902_+	YslB family protein	NA	NA	NA	NA	NA
WP_014566458.1|210043_211315_-	D-alanyl-lipoteichoic acid biosynthesis protein DltD	NA	NA	NA	NA	NA
WP_003564027.1|211311_211557_-	D-alanine--poly(phosphoribitol) ligase subunit 2	NA	NA	NA	NA	NA
WP_003564026.1|211625_212843_-	D-alanyl-lipoteichoic acid biosynthesis protein DltB	NA	A0A125RNP0	Pseudomonas_phage	25.3	7.7e-21
WP_012491201.1|212842_214363_-	D-alanine--poly(phosphoribitol) ligase subunit DltA	NA	A0A2K9KZV5	Tupanvirus	28.8	3.1e-43
WP_003564021.1|214430_214580_-	teichoic acid D-Ala incorporation-associated protein DltX	NA	NA	NA	NA	NA
WP_003564019.1|215077_215389_-	thioredoxin	NA	A0A2L1IVW2	Streptomyces_phage	36.7	4.7e-07
WP_012491200.1|215455_217816_-	endonuclease MutS2	NA	Q94M10	Lactobacillus_phage	98.2	4.2e-55
WP_003564014.1|217884_218418_-	CvpA family protein	NA	NA	NA	NA	NA
WP_003569330.1|218430_218676_-	cell division protein ZapA	NA	NA	NA	NA	NA
WP_003564011.1|218983_219304_-	DUF1292 domain-containing protein	NA	NA	NA	NA	NA
WP_003564009.1|219353_219788_-	Holliday junction resolvase RuvX	NA	NA	NA	NA	NA
WP_003564007.1|219787_220048_-	IreB family regulatory phosphoprotein	NA	NA	NA	NA	NA
WP_012491199.1|220511_223157_-|tRNA	alanine--tRNA ligase	tRNA	A0A2K9L3D8	Tupanvirus	32.1	2.0e-61
WP_012491198.1|223600_224536_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491197.1|224540_225887_-	DEAD/DEAH box helicase	NA	A0A0N9Q9J4	Chrysochromulina_ericina_virus	31.8	5.7e-49
>prophage 11
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	229750	231238	3035735		Cyanophage(100.0%)	1	NA	NA
WP_012491195.1|229750_231238_-	glucose-6-phosphate dehydrogenase	NA	M4SIY3	Cyanophage	34.8	8.4e-70
>prophage 12
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	235536	242706	3035735	tRNA	uncultured_Mediterranean_phage(25.0%)	7	NA	NA
WP_012491194.1|235536_236679_-|tRNA	tRNA guanosine(34) transglycosylase Tgt	tRNA	A0A1B1IVQ4	uncultured_Mediterranean_phage	43.8	4.6e-84
WP_014566456.1|237199_238273_-|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	tRNA	NA	NA	NA	NA
WP_003583784.1|238456_239473_-	Holliday junction branch migration DNA helicase RuvB	NA	A0A127AWE7	Bacillus_phage	27.1	8.2e-08
WP_003563967.1|239583_240180_-	Holliday junction branch migration protein RuvA	NA	NA	NA	NA	NA
WP_003563965.1|240272_240869_+	TVP38/TMEM64 family protein	NA	M1Q152	Streptococcus_phage	43.4	5.4e-36
WP_003563944.1|240974_241448_-	S-ribosylhomocysteine lyase	NA	NA	NA	NA	NA
WP_003563941.1|241572_242706_-	vitamin B12 independent methionine synthase	NA	A0A218MNE0	uncultured_virus	42.1	4.0e-72
>prophage 13
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	246350	247175	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003563931.1|246350_247175_+	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	38.7	4.5e-49
>prophage 14
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	253659	261565	3035735		uncultured_virus(25.0%)	6	NA	NA
WP_012491186.1|253659_256008_+	cation-translocating P-type ATPase	NA	A0A218MNH6	uncultured_virus	26.1	9.7e-28
WP_003563911.1|256112_256562_+	nucleoside-diphosphate kinase	NA	A0A2K9L595	Tupanvirus	36.3	6.1e-16
WP_003563906.1|256589_257324_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012491185.1|257506_257857_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491184.1|258000_259812_+	oligoendopeptidase F	NA	A0A1X9I5X5	Streptococcus_phage	41.1	2.0e-126
WP_012491183.1|259972_261565_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	31.9	1.6e-13
>prophage 15
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	273722	274349	3035735		Phage_Wrath(100.0%)	1	NA	NA
WP_003563873.1|273722_274349_-	transcriptional repressor LexA	NA	A0A1B2APZ3	Phage_Wrath	35.9	4.9e-11
>prophage 16
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	288714	298127	3035735		Bacillus_phage(25.0%)	7	NA	NA
WP_003563812.1|288714_289410_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.9	1.3e-33
WP_012491167.1|289567_289975_+	GtrA family protein	NA	NA	NA	NA	NA
WP_012491166.1|289961_292112_+	glycosyltransferase family 39 protein	NA	NA	NA	NA	NA
WP_003563806.1|292147_293125_+	glycosyltransferase	NA	I1TED8	Salmonella_phage	38.0	4.0e-52
WP_012491165.1|293363_296027_+	cation-translocating P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	30.8	3.7e-76
WP_011674252.1|296136_297096_+	acryloyl-CoA reductase	NA	NA	NA	NA	NA
WP_012491164.1|297323_298127_-	ATP-binding cassette domain-containing protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.4	4.9e-08
>prophage 17
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	315571	321727	3035735		Escherichia_phage(100.0%)	4	NA	NA
WP_012491156.1|315571_318697_-	SMC family ATPase	NA	A0A193GZI3	Escherichia_phage	23.4	7.3e-07
WP_003577967.1|318696_319818_-	exonuclease SbcCD subunit D	NA	NA	NA	NA	NA
WP_003563745.1|319878_320505_+	HAD-IA family hydrolase	NA	NA	NA	NA	NA
WP_003563743.1|320950_321727_+	DeoR/GlpR transcriptional regulator	NA	A0A077SK06	Escherichia_phage	28.8	6.7e-18
>prophage 18
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	332072	335574	3035735		Enterobacteria_phage(50.0%)	3	NA	NA
WP_012491149.1|332072_333086_-	LacI family DNA-binding transcriptional regulator	NA	C6ZCU4	Enterobacteria_phage	24.3	1.2e-11
WP_012491148.1|333121_334582_-	UDP-glucose--hexose-1-phosphate uridylyltransferase	NA	NA	NA	NA	NA
WP_003563715.1|334578_335574_-	UDP-glucose 4-epimerase GalE	NA	A0A2K9L5H6	Tupanvirus	37.9	1.4e-52
>prophage 19
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	346619	352185	3035735		Paramecium_bursaria_Chlorella_virus(33.33%)	4	NA	NA
WP_012491143.1|346619_347327_+	aquaporin family protein	NA	M1HQW3	Paramecium_bursaria_Chlorella_virus	34.0	5.1e-25
WP_011674225.1|347832_348414_-	uracil-DNA glycosylase family protein	NA	NA	NA	NA	NA
WP_012491142.1|348410_350087_-	DNA mismatch repair protein	NA	F2QAF9	Pyramimonas_orientalis_virus	29.0	2.8e-13
WP_016388687.1|350559_352185_-	ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.4	6.6e-44
>prophage 20
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	356934	360376	3035735		Bacillus_virus(50.0%)	3	NA	NA
WP_003563659.1|356934_357606_-	MgtC/SapB family protein	NA	G3MA03	Bacillus_virus	45.9	8.9e-19
WP_012491138.1|357735_358677_+	Dyp-type peroxidase	NA	NA	NA	NA	NA
WP_003563654.1|359059_360376_+	ammonium transporter	NA	H8ZJB2	Ostreococcus_tauri_virus	30.1	1.6e-32
>prophage 21
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	363879	364773	3035735		Brazilian_cedratvirus(100.0%)	1	NA	NA
WP_012491134.1|363879_364773_+	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	34.4	1.2e-18
>prophage 22
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	373059	378528	3035735		Klosneuvirus(33.33%)	6	NA	NA
WP_012491131.1|373059_373905_+	aldo/keto reductase	NA	A0A1V0SKP9	Klosneuvirus	23.8	3.6e-09
WP_003573864.1|374479_375103_+	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_126139139.1|375453_376935_+	ABC-F type ribosomal protection protein	NA	Q6DMX7	Streptococcus_phage	26.5	1.5e-31
WP_003563625.1|377134_377575_+	OsmC family protein	NA	NA	NA	NA	NA
WP_003563623.1|377726_378164_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003563620.1|378327_378528_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	67.7	3.1e-20
>prophage 23
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	391099	394604	3035735		Bacillus_phage(100.0%)	2	NA	NA
WP_003563585.1|391099_392881_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	26.7	2.7e-46
WP_003573839.1|392885_394604_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	23.9	3.1e-31
>prophage 24
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	400845	401640	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003563574.1|400845_401640_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	31.3	4.7e-27
>prophage 25
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	426044	440782	3035735	transposase	Lactobacillus_phage(85.71%)	16	NA	NA
WP_012491106.1|426044_427547_-|transposase	IS66 family transposase	transposase	NA	NA	NA	NA
WP_003585300.1|427647_428001_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_012491105.1|427975_428173_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491103.1|428519_430199_-	D-lactate dehydrogenase	NA	NA	NA	NA	NA
WP_123031263.1|430403_431147_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	98.4	1.5e-136
WP_012491102.1|431419_431551_-|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	90.7	2.3e-16
WP_010010565.1|431824_433093_-	NADPH-dependent oxidoreductase	NA	A0A2P0ZL82	Lactobacillus_phage	47.7	1.8e-49
WP_003593246.1|433103_433712_-	NAD(P)H-dependent oxidoreductase	NA	A0A2P0ZL77	Lactobacillus_phage	52.8	1.8e-50
WP_003593245.1|433858_434776_-	FAD:protein FMN transferase	NA	NA	NA	NA	NA
WP_012491102.1|435032_435164_+|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	90.7	2.3e-16
WP_123031263.1|435436_436180_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	98.4	1.5e-136
WP_123796556.1|436631_437418_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_012491099.1|437405_437663_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003567312.1|437940_438498_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003591692.1|438698_440027_-	MFS transporter	NA	NA	NA	NA	NA
WP_012491097.1|440194_440782_-	recombinase family protein	NA	M4QQC6	Vibrio_phage	42.3	1.0e-18
>prophage 26
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	447051	508470	3035735	transposase,integrase	Lactobacillus_phage(56.52%)	74	476610:476625	507935:507950
WP_012491088.1|447051_447672_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	52.9	4.9e-56
WP_123796556.1|447821_448608_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_005688360.1|448617_449772_-	cation:proton antiporter	NA	NA	NA	NA	NA
WP_012491085.1|450246_450930_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.3	3.1e-59
WP_012491084.1|451471_454276_+	cation-transporting P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	27.6	1.5e-72
WP_012491083.1|454335_454608_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003586210.1|454643_455021_+	hypothetical protein	NA	NA	NA	NA	NA
WP_095691935.1|454975_455762_+|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
WP_041168760.1|456447_458004_-	ClC family H(+)/Cl(-) exchange transporter	NA	NA	NA	NA	NA
WP_012491081.1|458424_458655_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491080.1|458789_459461_-	class A sortase	NA	NA	NA	NA	NA
WP_012491079.1|459539_459899_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_012491078.1|459915_460797_-	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_012491077.1|461299_461746_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003660106.1|462501_462645_+	hypothetical protein	NA	NA	NA	NA	NA
WP_164546521.1|462647_463037_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566424.1|463638_466185_-	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_016379926.1|466171_466417_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491069.1|466458_467703_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491068.1|467695_468130_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491067.1|468168_468426_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491066.1|468422_468623_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566423.1|469217_470039_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491064.1|470028_470436_-	thioredoxin family protein	NA	NA	NA	NA	NA
WP_012491063.1|470432_471077_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491062.1|471092_472103_-	C40 family peptidase	NA	A0A1X9SGZ2	Bradyrhizobium_phage	37.9	1.2e-14
WP_012491061.1|472104_474033_-	type IV secretory pathway, VirB4 protein	NA	NA	NA	NA	NA
WP_014566422.1|474013_474610_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003582234.1|474593_474929_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491059.1|474934_476992_-	hypothetical protein	NA	NA	NA	NA	NA
476610:476625	attL	CCGACGCCAGCAACGA	NA	NA	NA	NA
WP_012491058.1|476988_479448_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_012491057.1|479474_480053_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491056.1|480061_480481_-	single-stranded DNA-binding protein	NA	NA	NA	NA	NA
WP_126139138.1|480490_482041_-	DUF5011 domain-containing protein	NA	NA	NA	NA	NA
WP_010493190.1|482018_483260_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003572360.1|483302_483530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003572358.1|483531_483708_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003572355.1|483726_483993_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010493185.1|484004_484283_-	hypothetical protein	NA	NA	NA	NA	NA
WP_016364094.1|485012_485876_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	30.5	3.1e-24
WP_014951815.1|485921_486863_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	28.2	3.1e-17
WP_003582147.1|486796_487525_-	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	40.1	7.6e-32
WP_076626284.1|487554_487887_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_010493173.1|488006_488342_-	ribonucleoside-diphosphate reductase	NA	A0A0N7IRA2	Lactobacillus_phage	90.6	6.8e-52
WP_003573729.1|489874_490093_+	CsbD family protein	NA	NA	NA	NA	NA
WP_012491050.1|490288_491287_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	3.9e-55
WP_003572221.1|491537_492191_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010493154.1|492704_493148_-	autolysin regulatory protein arpU	NA	A0A0P0IZI6	Lactobacillus_phage	97.3	1.2e-77
WP_010493151.1|493662_493995_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010493149.1|494064_494352_-	hypothetical protein	NA	Q8LTA8	Lactobacillus_phage	76.8	1.6e-38
WP_003572217.1|494363_495101_-	hypothetical protein	NA	A0A097BY87	Enterococcus_phage	43.0	1.3e-47
WP_003564822.1|495102_495525_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003574016.1|495571_496090_-	exonuclease domain-containing protein	NA	NA	NA	NA	NA
WP_012491048.1|496089_496914_-	ATP-binding protein	NA	A0A0P0I3L9	Lactobacillus_phage	74.7	9.6e-116
WP_003589923.1|496928_497675_-	DnaD domain protein	NA	A0A0N7IRA7	Lactobacillus_phage	56.1	5.8e-35
WP_010493132.1|497667_497982_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003586921.1|498162_498708_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003572201.1|498690_498894_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003572199.1|498978_499335_-	DUF771 domain-containing protein	NA	U5U4L9	Lactobacillus_phage	98.3	2.0e-62
WP_003572196.1|499400_499652_+	DUF1883 domain-containing protein	NA	NA	NA	NA	NA
WP_003572193.1|499644_499824_-	hypothetical protein	NA	NA	NA	NA	NA
WP_010493122.1|499824_500583_-	ORF6C domain-containing protein	NA	A0A1B0YEA7	Lactobacillus_phage	49.4	1.9e-41
WP_003572188.1|500643_501477_+	TIGR02391 family protein	NA	A0A1S5SBU1	Streptococcus_phage	37.8	2.8e-46
WP_003572187.1|501447_501648_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003574003.1|501689_501938_-	hypothetical protein	NA	A0A0P0ID24	Lactobacillus_phage	97.5	2.7e-37
WP_003572184.1|502181_502535_+	helix-turn-helix transcriptional regulator	NA	A0A141E1M3	Streptococcus_phage	40.9	7.7e-14
WP_003572182.1|502527_502950_+	ImmA/IrrE family metallo-endopeptidase	NA	A0A0P0IJN5	Lactobacillus_phage	39.1	7.8e-21
WP_003589919.1|503108_503816_+	zinc ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_012491047.1|504008_504245_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003589914.1|504228_504849_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003573997.1|504938_505199_+	hypothetical protein	NA	B4XYT0	Lactobacillus_phage	40.7	2.5e-09
WP_003569067.1|505311_506481_+|integrase	site-specific integrase	integrase	Q6J1W6	Lactobacillus_phage	98.2	6.6e-219
WP_012491046.1|506801_507347_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003577893.1|507540_508470_-	cysteine synthase A	NA	A0A1X9I5F1	Streptococcus_phage	63.7	5.9e-106
507935:507950	attR	CCGACGCCAGCAACGA	NA	NA	NA	NA
>prophage 27
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	514791	521060	3035735		Lactobacillus_phage(50.0%)	4	NA	NA
WP_012491038.1|514791_515685_+	LysR family transcriptional regulator	NA	A0A2P0ZL89	Lactobacillus_phage	23.2	1.8e-06
WP_012491037.1|515863_516367_+	DUF1440 domain-containing protein	NA	NA	NA	NA	NA
WP_003577866.1|516476_517919_-	amino acid permease	NA	NA	NA	NA	NA
WP_012491036.1|518525_521060_-	M1 family metallopeptidase	NA	A0A0P0IY26	Acinetobacter_phage	27.7	6.0e-68
>prophage 28
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	536137	541552	3035735		Staphylococcus_phage(66.67%)	5	NA	NA
WP_012491031.1|536137_536926_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.4	2.1e-19
WP_014566416.1|537123_538239_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA	NA
WP_012491029.1|538226_538925_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	32.7	7.5e-29
WP_012491028.1|539220_540825_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491027.1|540817_541552_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.7	1.5e-11
>prophage 29
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	547603	548188	3035735		Clostridium_phage(100.0%)	1	NA	NA
WP_012491023.1|547603_548188_+	recombinase family protein	NA	A0A0A8WIK3	Clostridium_phage	43.3	3.8e-34
>prophage 30
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	552392	556989	3035735		Pandoravirus(50.0%)	5	NA	NA
WP_003593085.1|552392_553823_+	glycoside hydrolase family 1 protein	NA	A0A0B5JD41	Pandoravirus	27.3	5.7e-39
WP_012491020.1|553822_554425_+	membrane protein	NA	NA	NA	NA	NA
WP_012491019.1|554488_554833_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012491018.1|554978_556001_+	zinc-binding alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_012491017.1|556122_556989_-	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	30.9	4.2e-29
>prophage 31
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	562963	566804	3035735		Streptococcus_phage(33.33%)	3	NA	NA
WP_012491014.1|562963_563713_-	class I SAM-dependent methyltransferase	NA	A0A1X9I6N4	Streptococcus_phage	55.9	9.1e-73
WP_012491013.1|563971_564985_+	serine hydrolase	NA	X2KYU1	Mycobacterium_phage	26.1	9.6e-17
WP_003577806.1|565070_566804_-	pyruvate oxidase	NA	G8DDL3	Micromonas_pusilla_virus	23.9	7.9e-27
>prophage 32
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	579590	580607	3035735		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_003583296.1|579590_580607_-	linear amide C-N hydrolase	NA	M1H9I8	Acanthocystis_turfacea_Chlorella_virus	29.2	5.8e-22
>prophage 33
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	585886	587596	3035735		Bacillus_phage(100.0%)	1	NA	NA
WP_012491002.1|585886_587596_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.5	8.0e-40
>prophage 34
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	599294	602386	3035735		Erysipelothrix_phage(50.0%)	4	NA	NA
WP_012490994.1|599294_600665_+	FAD-dependent oxidoreductase	NA	A0A2K5B2C5	Erysipelothrix_phage	27.0	4.8e-11
WP_012490993.1|600955_601324_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA	NA
WP_003583264.1|601323_601584_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012490992.1|601696_602386_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	37.9	4.8e-28
>prophage 35
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	606229	612955	3035735		Lactobacillus_phage(33.33%)	8	NA	NA
WP_014566409.1|606229_606994_-	LysM peptidoglycan-binding domain-containing protein	NA	A0A2P1CCE6	Lactobacillus_phage	51.3	1.1e-46
WP_003563363.1|607003_607156_-	YvrJ family protein	NA	NA	NA	NA	NA
WP_012490988.1|607323_607854_-	DNA-directed RNA polymerase subunit sigma-24	NA	NA	NA	NA	NA
WP_012490987.1|608255_609524_+	MFS transporter	NA	Q6JIH2	Burkholderia_virus	29.5	1.1e-46
WP_012490986.1|609951_610638_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003563355.1|610634_611303_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003563353.1|611317_612196_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012490985.1|612205_612955_+	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.5	2.4e-25
>prophage 36
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	629991	631692	3035735		Tupanvirus(100.0%)	1	NA	NA
WP_012490973.1|629991_631692_-	ABC transporter ATP-binding protein	NA	A0A2K9L0W2	Tupanvirus	25.0	5.7e-22
>prophage 37
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	652122	652923	3035735		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_012490959.1|652122_652923_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.1	9.6e-12
>prophage 38
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	665626	726550	3035735	protease,transposase	Staphylococcus_phage(50.0%)	58	NA	NA
WP_012490951.1|665626_666625_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.4	2.5e-49
WP_012490950.1|666784_668251_-	xylulokinase	NA	NA	NA	NA	NA
WP_012490949.1|668369_669056_-	D-lyxose/D-mannose family sugar isomerase	NA	NA	NA	NA	NA
WP_012490948.1|669062_670037_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_014566402.1|670059_671145_-	PTS fructose transporter subunit IIC	NA	NA	NA	NA	NA
WP_003586737.1|671160_671478_-	PTS fructose transporter subunit IIB	NA	NA	NA	NA	NA
WP_012490946.1|671474_671948_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_012490945.1|671977_672919_-	ketose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_012490944.1|672920_673391_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_012490943.1|673392_674850_-	PRD domain-containing protein	NA	NA	NA	NA	NA
WP_014951596.1|675259_676555_-	RNA polymerase factor sigma-54	NA	NA	NA	NA	NA
WP_012490941.1|676596_679335_-	sigma 54-interacting transcriptional regulator	NA	NA	NA	NA	NA
WP_003586723.1|679629_680037_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003586720.1|680064_680574_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_012490940.1|680599_681367_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_003586715.1|681370_682213_+	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_012490939.1|682223_683021_+	protein SipE	NA	NA	NA	NA	NA
WP_012490938.1|683165_683906_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012490937.1|683948_684446_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012490936.1|684461_685868_-	C4-dicarboxylate transporter DcuC	NA	NA	NA	NA	NA
WP_003604304.1|685879_686815_-	nucleoside hydrolase	NA	NA	NA	NA	NA
WP_014566730.1|687162_688287_-	SPASM domain-containing protein	NA	NA	NA	NA	NA
WP_012490934.1|688299_689079_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_012490933.1|689081_689936_-	formylglycine-generating enzyme family protein	NA	A0A075BSL8	Microcystis_phage	29.2	8.4e-14
WP_003601683.1|690659_691658_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
WP_012490930.1|692655_693393_-	PTS system mannose/fructose/sorbose family transporter subunit IID	NA	NA	NA	NA	NA
WP_003586701.1|693379_694204_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_003586699.1|694562_695546_+	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA	NA
WP_012490929.1|695629_695860_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016364816.1|695859_696339_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003563280.1|696435_697278_-	serine hydrolase	NA	NA	NA	NA	NA
WP_003563277.1|699290_699662_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003563273.1|699774_700173_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA	NA
WP_080513750.1|701784_703224_-	bacterial Ig-like domain-containing protein	NA	NA	NA	NA	NA
WP_012490924.1|703365_704247_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003601683.1|704305_705304_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
WP_012490923.1|705210_705945_-	KxYKxGKxW signal peptide domain-containing protein	NA	NA	NA	NA	NA
WP_003563261.1|707198_707978_-	alpha/beta hydrolase	NA	A0A291AV30	Mycobacterium_phage	25.4	1.0e-05
WP_012490922.1|708532_709528_-	ornithine cyclodeaminase family protein	NA	NA	NA	NA	NA
WP_003563257.1|709567_710437_-	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_003563255.1|710429_711260_-	transcriptional regulator	NA	NA	NA	NA	NA
WP_012490921.1|711546_712188_-	zeta toxin family protein	NA	NA	NA	NA	NA
WP_003563251.1|712300_713161_-	class II fructose-bisphosphate aldolase	NA	NA	NA	NA	NA
WP_003604285.1|713182_713605_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012490920.1|713621_714908_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_003573439.1|715049_715361_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_012490919.1|715361_716330_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_012490918.1|716322_717444_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012490917.1|717714_719241_-	flavocytochrome c	NA	A0A2P0ZL82	Lactobacillus_phage	31.3	7.4e-53
WP_012490915.1|719691_720480_+	membrane protein	NA	NA	NA	NA	NA
WP_003577587.1|720469_721150_+	hypothetical protein	NA	NA	NA	NA	NA
WP_016363600.1|721149_721875_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012490773.1|722300_723716_-|transposase	IS5-like element ISLca2 family transposase	transposase	NA	NA	NA	NA
WP_014566391.1|723823_724093_+	AAA family ATPase	NA	NA	NA	NA	NA
WP_003577580.1|724082_724607_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012490911.1|724638_725028_+	YxeA family protein	NA	NA	NA	NA	NA
WP_024109404.1|725110_725797_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
WP_014566389.1|725860_726550_-|protease	rhomboid family intramembrane serine protease	protease	NA	NA	NA	NA
>prophage 39
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	735598	737101	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003563207.1|735598_737101_-	sugar ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.6	4.3e-21
>prophage 40
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	745722	747066	3035735		Planktothrix_phage(100.0%)	1	NA	NA
WP_012490897.1|745722_747066_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.2	6.3e-16
>prophage 41
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	780316	780997	3035735		Bacillus_phage(100.0%)	1	NA	NA
WP_012490878.1|780316_780997_+	hypothetical protein	NA	A0A217ERD3	Bacillus_phage	35.2	3.2e-16
>prophage 42
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	785620	787105	3035735		Streptomyces_phage(100.0%)	1	NA	NA
WP_012490875.1|785620_787105_-	C40 family peptidase	NA	A0A1J0GW44	Streptomyces_phage	50.5	2.1e-20
>prophage 43
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	793460	794952	3035735		Staphylococcus_phage(50.0%)	2	NA	NA
WP_014566374.1|793460_794174_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.3	1.0e-12
WP_003573329.1|794166_794952_-	ABC transporter ATP-binding protein	NA	A0A2R8FG22	Brazilian_cedratvirus	27.4	6.1e-11
>prophage 44
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	799953	800268	3035735		Streptomyces_phage(100.0%)	1	NA	NA
WP_003568841.1|799953_800268_-	thioredoxin family protein	NA	A0A1J0GW78	Streptomyces_phage	36.0	5.4e-11
>prophage 45
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	806535	808083	3035735		Tupanvirus(100.0%)	1	NA	NA
WP_003573180.1|806535_808083_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	26.1	1.1e-43
>prophage 46
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	811566	814323	3035735		Chrysochromulina_ericina_virus(50.0%)	3	NA	NA
WP_003563028.1|811566_812349_-	glycosyltransferase family 2 protein	NA	A0A0N9R0I0	Chrysochromulina_ericina_virus	29.6	3.8e-05
WP_003563026.1|812433_813192_-	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA	NA
WP_012490867.1|813636_814323_+	hydrolase	NA	C1KFL4	Lactobacillus_virus	65.5	3.6e-23
>prophage 47
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	819613	822925	3035735		Staphylococcus_phage(50.0%)	4	NA	NA
WP_012490866.1|819613_820495_+	NAD(P)-dependent oxidoreductase	NA	D2K0C8	Staphylococcus_phage	32.2	3.5e-07
WP_003597217.1|820491_821340_+	metallophosphoesterase family protein	NA	NA	NA	NA	NA
WP_012490865.1|821411_822209_-	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_012490864.1|822205_822925_-	ATP-binding cassette domain-containing protein	NA	A0A1V0SKJ1	Klosneuvirus	25.0	7.1e-14
>prophage 48
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	827101	830886	3035735		Bacillus_phage(50.0%)	2	NA	NA
WP_012490861.1|827101_829867_-	SH3-like domain-containing protein	NA	A0A141HSE6	Bacillus_phage	28.6	8.4e-15
WP_003573153.1|830112_830886_-	mannosyltransferase	NA	A0A1B1ISM5	uncultured_Mediterranean_phage	30.6	8.4e-05
>prophage 49
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	838299	839205	3035735		Cyanophage(100.0%)	1	NA	NA
WP_012490857.1|838299_839205_-	decarboxylating 6-phosphogluconate dehydrogenase	NA	H6WFR9	Cyanophage	36.5	1.7e-49
>prophage 50
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	853341	854202	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_012490853.1|853341_854202_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	43.1	1.7e-59
>prophage 51
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	858757	867387	3035735		Bacillus_phage(40.0%)	9	NA	NA
WP_003562959.1|858757_859948_-	HAMP domain-containing histidine kinase	NA	W8CYF6	Bacillus_phage	28.9	3.3e-24
WP_003562957.1|859953_860640_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	37.9	2.1e-36
WP_003600950.1|860794_861475_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003562953.1|861556_863044_-	IMP dehydrogenase	NA	A0A1V0SHK8	Klosneuvirus	40.7	2.6e-95
WP_012490849.1|863419_864241_-	DUF1129 domain-containing protein	NA	NA	NA	NA	NA
WP_003562949.1|864272_865379_-	redox-regulated ATPase YchF	NA	NA	NA	NA	NA
WP_003562948.1|865410_865593_-	DUF951 domain-containing protein	NA	NA	NA	NA	NA
WP_003562946.1|865757_866630_-	ParB/RepB/Spo0J family partition protein	NA	I3NLC2	Bifidobacterium_phage	31.0	3.7e-17
WP_003562943.1|866619_867387_-	ParA family protein	NA	Q8JL10	Natrialba_phage	32.3	9.2e-28
>prophage 52
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	876926	877889	3035735		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_003562906.1|876926_877889_+	NAD(P)-binding domain-containing protein	NA	Q89388	Paramecium_bursaria_Chlorella_virus	29.9	3.8e-23
>prophage 53
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	901591	905111	3035735		Listeria_phage(50.0%)	3	NA	NA
WP_012490832.1|901591_902416_+	serine/threonine protein phosphatase	NA	A8AT52	Listeria_phage	29.5	1.2e-12
WP_012490831.1|902516_903707_-	acetate kinase	NA	NA	NA	NA	NA
WP_004559702.1|903764_905111_-	replication-associated recombination protein A	NA	G3MBE0	Bacillus_virus	43.6	2.3e-90
>prophage 54
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	916862	919788	3035735	transposase	Staphylococcus_phage(50.0%)	2	NA	NA
WP_012490819.1|916862_917861_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.7	8.5e-50
WP_003562776.1|918330_919788_-	NCS2 family permease	NA	A0A0R6PHV4	Moraxella_phage	28.9	4.4e-39
>prophage 55
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	922971	924531	3035735		Paramecium_bursaria_Chlorella_virus(50.0%)	2	NA	NA
WP_003573025.1|922971_923973_-	D-2-hydroxyacid dehydrogenase	NA	M1HMI7	Paramecium_bursaria_Chlorella_virus	34.5	1.8e-47
WP_003573023.1|924039_924531_-	methylated-DNA--[protein]-cysteine S-methyltransferase	NA	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	38.2	1.5e-15
>prophage 56
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	937463	953892	3035735		Streptococcus_phage(28.57%)	12	NA	NA
WP_012490813.1|937463_939647_-	anaerobic ribonucleoside-triphosphate reductase	NA	A0A0C5KKX3	Enterococcus_phage	59.7	6.2e-255
WP_003562730.1|939960_940722_-	ABC transporter permease subunit	NA	NA	NA	NA	NA
WP_003573002.1|940718_941648_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	37.3	3.6e-34
WP_003562727.1|941644_941860_-	PLDc N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003573000.1|941926_943048_-	helix-turn-helix transcriptional regulator	NA	Q6J1N3	Burkholderia_virus	43.8	5.0e-06
WP_012490812.1|943495_944374_-	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012490811.1|944618_947039_+	plasma-membrane proton-efflux P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	24.4	1.2e-41
WP_003562714.1|947125_947476_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012490810.1|947570_949430_-	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	34.8	3.9e-88
WP_003572993.1|949738_951034_-	adenylosuccinate synthase	NA	L7Y4J5	Megavirus	34.4	1.5e-62
WP_003572991.1|951274_952438_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003562690.1|952503_953892_-	replicative DNA helicase	NA	A0A1P8VVQ6	Streptococcus_phage	52.6	1.6e-126
>prophage 57
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	975781	976468	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_012490794.1|975781_976468_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.0	1.0e-25
>prophage 58
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	988184	989989	3035735		Acinetobacter_phage(100.0%)	2	NA	NA
WP_012490786.1|988184_989210_+	anthranilate phosphoribosyltransferase	NA	A0A0N7IRD9	Acinetobacter_phage	38.3	6.0e-59
WP_012490785.1|989206_989989_+	indole-3-glycerol phosphate synthase TrpC	NA	A0A0P0IR83	Acinetobacter_phage	39.5	7.6e-38
>prophage 59
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	995008	1043839	3035735	bacteriocin,protease,transposase,holin	Streptococcus_phage(40.0%)	49	NA	NA
WP_012490781.1|995008_996865_-	heavy metal translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	33.0	2.2e-67
WP_014566715.1|996901_997087_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566714.1|997210_997432_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003577283.1|997497_998151_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_012490780.1|998783_1000037_+|holin	betaine/proline/choline family ABC transporter ATP-binding protein	holin	Q6GZ03	Mycoplasma_phage	43.0	1.5e-14
WP_003568628.1|1000039_1000669_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003562594.1|1000680_1001610_+	osmoprotectant ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003562592.1|1001609_1002272_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003572931.1|1002484_1002745_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003572929.1|1002995_1003598_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012490777.1|1003594_1006906_+	MMPL family transporter	NA	NA	NA	NA	NA
WP_011673959.1|1007086_1007410_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012490776.1|1007587_1008961_+	MFS transporter	NA	NA	NA	NA	NA
WP_012490775.1|1009298_1010891_-	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	28.5	1.1e-11
WP_012490774.1|1010983_1011859_+	Rgg/GadR/MutR family transcriptional regulator	NA	A0A1X9I6E0	Streptococcus_phage	26.6	1.0e-11
WP_003562576.1|1012047_1012368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003562575.1|1013066_1013759_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012490773.1|1014140_1015556_+|transposase	IS5-like element ISLca2 family transposase	transposase	NA	NA	NA	NA
WP_012490772.1|1015724_1016375_+	bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase	NA	NA	NA	NA	NA
WP_012490771.1|1016720_1017596_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_012490770.1|1017942_1018158_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003592450.1|1019038_1019368_-	AzlD domain-containing protein	NA	NA	NA	NA	NA
WP_012490769.1|1019354_1020065_-	AzlC family ABC transporter permease	NA	NA	NA	NA	NA
WP_003568611.1|1020398_1020737_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003659032.1|1020888_1021362_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003577243.1|1021719_1022331_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003577242.1|1022462_1022651_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003577240.1|1022819_1023131_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003577239.1|1023180_1023816_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012490768.1|1024010_1025453_-	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_003562540.1|1025693_1026053_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012490767.1|1026128_1026473_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003568512.1|1026695_1028072_-	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_012490766.1|1028300_1028939_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003568507.1|1028987_1029881_+	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_014951491.1|1030004_1030610_-	DUF1211 domain-containing protein	NA	NA	NA	NA	NA
WP_012490764.1|1030791_1031679_+	sulfite exporter TauE/SafE family protein	NA	NA	NA	NA	NA
WP_012490763.1|1031747_1033898_+	DUF1906 domain-containing protein	NA	NA	NA	NA	NA
WP_012490762.1|1033917_1034421_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566351.1|1034353_1035034_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003584076.1|1035259_1035580_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003584074.1|1035584_1036391_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_012490761.1|1036434_1036986_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003568488.1|1037265_1037967_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	40.5	3.9e-33
WP_012490760.1|1037979_1040553_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003572828.1|1040756_1041992_+	CHAP domain-containing protein	NA	NA	NA	NA	NA
WP_012490759.1|1042489_1042669_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003568482.1|1042719_1042902_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003568480.1|1042981_1043839_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
>prophage 60
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1052001	1062565	3035735		Lactobacillus_phage(20.0%)	9	NA	NA
WP_012490752.1|1052001_1052598_-	single-stranded DNA-binding protein	NA	A0A2D1GPB7	Lactobacillus_phage	57.6	3.5e-51
WP_003568460.1|1052628_1052925_-	30S ribosomal protein S6	NA	NA	NA	NA	NA
WP_003568458.1|1053052_1053484_-	single-stranded DNA-binding protein	NA	A0A2I2MUI5	uncultured_Caudovirales_phage	46.9	1.3e-26
WP_003568456.1|1053666_1054371_+	deoxyribose-phosphate aldolase	NA	NA	NA	NA	NA
WP_003584054.1|1054475_1057097_-	DNA gyrase subunit A	NA	A0A172JHV7	Bacillus_phage	33.5	4.9e-113
WP_003568453.1|1057158_1059120_-	DNA topoisomerase (ATP-hydrolyzing) subunit B	NA	G3M9Z3	Bacillus_virus	46.6	4.3e-146
WP_003572804.1|1059248_1060364_-	DNA replication/repair protein RecF	NA	NA	NA	NA	NA
WP_003568449.1|1060360_1060573_-	S4 domain-containing protein YaaA	NA	NA	NA	NA	NA
WP_003568447.1|1061425_1062565_-	DNA polymerase III subunit beta	NA	D0R7I4	Paenibacillus_phage	33.1	5.0e-14
>prophage 61
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1067923	1110475	3035735	portal,tRNA,head,terminase,tail,capsid	uncultured_Caudovirales_phage(30.0%)	43	NA	NA
WP_003568424.1|1067923_1069312_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE	tRNA	NA	NA	NA	NA
WP_003572790.1|1069353_1071255_+|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	tRNA	NA	NA	NA	NA
WP_012492233.1|1071517_1071727_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003568534.1|1071888_1072653_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_003568415.1|1072654_1073143_+	threonine/serine exporter family protein	NA	NA	NA	NA	NA
WP_012492232.1|1073139_1074339_+	amidohydrolase	NA	NA	NA	NA	NA
WP_012492231.1|1074482_1075568_-	iron-containing alcohol dehydrogenase family protein	NA	NA	NA	NA	NA
WP_014566708.1|1076209_1080127_+	leucine-rich repeat protein	NA	NA	NA	NA	NA
WP_012492229.1|1080151_1082170_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_003571997.1|1082326_1083517_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003568404.1|1083503_1084193_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.3	2.6e-37
WP_012492227.1|1084185_1085250_-	transporter	NA	NA	NA	NA	NA
WP_003577160.1|1085820_1085997_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012492225.1|1086007_1086268_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003568396.1|1086610_1087396_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003571992.1|1087693_1088404_-	glucosamine-6-phosphate deaminase	NA	NA	NA	NA	NA
WP_003568392.1|1088805_1090632_+	PTS mannitol transporter subunit IICBA	NA	NA	NA	NA	NA
WP_014566838.1|1090668_1092726_+	HTH domain-containing protein	NA	NA	NA	NA	NA
WP_003658978.1|1092730_1093174_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA	NA
WP_003568386.1|1093177_1094332_+	mannitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA	NA
WP_003600254.1|1094449_1095406_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_003568382.1|1095503_1096433_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012492221.1|1096632_1097553_+	ribose-phosphate pyrophosphokinase	NA	A0A1V0SHF7	Hokovirus	32.9	1.2e-42
WP_003568375.1|1098244_1098493_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA	NA
WP_003568371.1|1098508_1098649_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003574397.1|1099106_1099400_-|head,tail	phage gp6-like head-tail connector protein	head,tail	NA	NA	NA	NA
WP_012492220.1|1099454_1101011_-|capsid	phage major capsid protein	capsid	A0A2H4J9X8	uncultured_Caudovirales_phage	32.0	4.6e-34
WP_010489222.1|1100997_1102179_-|portal	phage portal protein	portal	A0A2H4JB06	uncultured_Caudovirales_phage	35.5	2.8e-60
WP_014952496.1|1102183_1102363_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012492218.1|1102328_1104032_-|terminase	terminase	terminase	A0A2H4JBN3	uncultured_Caudovirales_phage	42.1	2.3e-116
WP_010489224.1|1104028_1104499_-|terminase	phage terminase small subunit P27 family	terminase	M1PKP2	Streptococcus_phage	26.5	4.6e-06
WP_014952495.1|1104615_1105038_-	HNH endonuclease	NA	A0A1J0MFT4	Staphylococcus_phage	45.4	1.2e-21
WP_012492217.1|1105034_1105220_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012492216.1|1105224_1105560_-|head	phage head closure protein	head	NA	NA	NA	NA
WP_012492215.1|1105885_1107472_-	primase	NA	A0A1B1P7L5	Bacillus_phage	27.9	4.0e-25
WP_014566705.1|1107484_1108297_-	bifunctional DNA primase/polymerase	NA	Q854C1	Mycobacterium_phage	34.2	6.7e-13
WP_014566704.1|1108280_1108469_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012492212.1|1108465_1108756_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012492211.1|1108802_1108994_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012492210.1|1108974_1109112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012492209.1|1109104_1109326_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003594046.1|1109393_1109669_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012492208.1|1109836_1110475_+	helix-turn-helix domain-containing protein	NA	L0P7E1	Lactobacillus_phage	27.6	2.4e-05
>prophage 62
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1119346	1120672	3035735		Dickeya_phage(100.0%)	1	NA	NA
WP_003581587.1|1119346_1120672_+	2-hydroxycarboxylate transporter family protein	NA	A0A140XAH4	Dickeya_phage	52.4	2.4e-15
>prophage 63
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1137774	1138515	3035735		Planktothrix_phage(100.0%)	1	NA	NA
WP_003568275.1|1137774_1138515_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	5.9e-32
>prophage 64
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1146270	1147017	3035735		Planktothrix_phage(100.0%)	1	NA	NA
WP_012492183.1|1146270_1147017_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.8	8.1e-29
>prophage 65
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1174922	1186373	3035735		Bacillus_phage(40.0%)	9	NA	NA
WP_003658889.1|1174922_1175636_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	39.0	5.1e-41
WP_014566699.1|1175651_1177562_+	cell wall metabolism sensor histidine kinase WalK	NA	W8CYF6	Bacillus_phage	32.9	5.6e-34
WP_012492170.1|1177551_1178979_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003568189.1|1179033_1179831_+	two-component system regulatory protein YycI	NA	NA	NA	NA	NA
WP_003568187.1|1179900_1180719_+	MBL fold metallo-hydrolase	NA	A0A0C5AFC1	Paenibacillus_phage	37.8	2.8e-35
WP_003571864.1|1181217_1182546_+	trypsin-like peptidase domain-containing protein	NA	A0A1B1IT49	uncultured_Mediterranean_phage	32.1	2.5e-20
WP_003568183.1|1183157_1183562_+	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA	NA
WP_012492169.1|1183721_1184159_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA	NA
WP_012492168.1|1184525_1186373_+	cadmium-translocating P-type ATPase	NA	E4ZFI9	Streptococcus_phage	28.9	1.7e-59
>prophage 66
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1195097	1200761	3035735	transposase	Staphylococcus_phage(33.33%)	7	NA	NA
WP_012492161.1|1195097_1195781_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.3	1.8e-59
WP_014566832.1|1195890_1197120_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012492159.1|1197373_1197835_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014566697.1|1197876_1198377_+	GNAT family N-acetyltransferase	NA	A0A1X9I6I8	Streptococcus_phage	36.4	1.3e-19
WP_012492157.1|1198467_1198989_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012492156.1|1198985_1199741_+	tyrosine-protein phosphatase	NA	NA	NA	NA	NA
WP_012492155.1|1199723_1200761_-	NADP-dependent oxidoreductase	NA	A0A0G2Y405	Acanthamoeba_polyphaga_mimivirus	28.5	1.2e-06
>prophage 67
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1216557	1219963	3035735		Bacillus_virus(66.67%)	3	NA	NA
WP_003576835.1|1216557_1217118_+	cysteine hydrolase	NA	G3MA16	Bacillus_virus	41.8	1.6e-29
WP_012492140.1|1217151_1218588_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	44.4	4.4e-100
WP_003581443.1|1218844_1219963_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	40.4	4.0e-16
>prophage 68
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1223236	1229636	3035735		Staphylococcus_phage(33.33%)	7	NA	NA
WP_012492138.1|1223236_1223650_+	arsenate reductase (thioredoxin)	NA	A0A2H4PQT9	Staphylococcus_phage	48.9	8.1e-31
WP_012492136.1|1225153_1225711_+	helix-turn-helix transcriptional regulator	NA	A0A1B1P888	Bacillus_phage	44.1	3.4e-08
WP_012492135.1|1225734_1225953_+	DUF3923 family protein	NA	NA	NA	NA	NA
WP_012492134.1|1226171_1226489_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012492133.1|1226701_1227205_-	isochorismatase family protein	NA	NA	NA	NA	NA
WP_012492132.1|1227318_1227822_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_012492131.1|1228061_1229636_-	MFS transporter	NA	A0A0M3UL24	Mycobacterium_phage	27.5	1.2e-26
>prophage 69
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1238281	1239280	3035735	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_003601683.1|1238281_1239280_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
>prophage 70
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1243607	1244651	3035735		Tupanvirus(100.0%)	1	NA	NA
WP_012492121.1|1243607_1244651_+	zinc-binding dehydrogenase	NA	A0A2K9L7I1	Tupanvirus	25.9	2.6e-09
>prophage 71
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1280735	1281407	3035735		Synechococcus_phage(100.0%)	1	NA	NA
WP_003568020.1|1280735_1281407_+	transaldolase	NA	C7BV14	Synechococcus_phage	23.6	7.8e-15
>prophage 72
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1294420	1296024	3035735	transposase	Lactobacillus_phage(50.0%)	2	NA	NA
WP_014951815.1|1294420_1295362_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	28.2	3.1e-17
WP_003582147.1|1295295_1296024_-	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	40.1	7.6e-32
>prophage 73
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1299866	1300865	3035735	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_003601683.1|1299866_1300865_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
>prophage 74
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1310084	1314663	3035735		Bacillus_phage(33.33%)	5	NA	NA
WP_012492091.1|1310084_1310786_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.4	2.1e-34
WP_003567961.1|1310801_1312193_+	HAMP domain-containing histidine kinase	NA	Q6XLV6	Feldmannia_irregularis_virus	21.9	1.5e-07
WP_012492090.1|1312402_1313059_+	VTT domain-containing protein	NA	NA	NA	NA	NA
WP_003606139.1|1313048_1313720_+	phosphatase PAP2 family protein	NA	NA	NA	NA	NA
WP_012492089.1|1313721_1314663_+	glycosyltransferase family 2 protein	NA	F1C5B0	Cronobacter_phage	38.9	1.4e-49
>prophage 75
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1320089	1320914	3035735		Trichoplusia_ni_ascovirus(100.0%)	1	NA	NA
WP_003567943.1|1320089_1320914_-	2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase KduD	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.7	3.0e-16
>prophage 76
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1367261	1374253	3035735		Bacillus_phage(33.33%)	6	NA	NA
WP_012492055.1|1367261_1368455_+	recombinase RecA	NA	A0A0S2MVG1	Bacillus_phage	59.8	1.9e-104
WP_012492054.1|1368569_1369145_-	TetR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012492053.1|1369303_1371166_+	MFS transporter	NA	NA	NA	NA	NA
WP_012492052.1|1371410_1372613_-	PLP-dependent aminotransferase family protein	NA	A0A1X9I5H2	Streptococcus_phage	27.9	5.6e-24
WP_012492051.1|1372862_1373765_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003600063.1|1373770_1374253_-	ribonuclease HI	NA	A0A0H3UZB5	Geobacillus_virus	38.1	3.1e-21
>prophage 77
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1380024	1383984	3035735		uncultured_Mediterranean_phage(50.0%)	3	NA	NA
WP_012492045.1|1380024_1382553_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	32.9	3.5e-108
WP_012492044.1|1382765_1383182_-	MarR family transcriptional regulator	NA	NA	NA	NA	NA
WP_014566675.1|1383309_1383984_+	HD domain-containing protein	NA	S4W232	Pandoravirus	30.9	3.0e-14
>prophage 78
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1392029	1395895	3035735		Bacillus_virus(50.0%)	4	NA	NA
WP_003567800.1|1392029_1392989_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	32.9	8.8e-28
WP_014566673.1|1392994_1394320_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA	NA
WP_012492037.1|1394471_1394624_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566671.1|1394911_1395895_+	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	31.4	3.2e-25
>prophage 79
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1404206	1405139	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003567783.1|1404206_1405139_-	aldo/keto reductase	NA	A0A2H4PQR8	Staphylococcus_phage	24.3	8.9e-09
>prophage 80
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1418775	1424602	3035735	tRNA	Organic_Lake_phycodnavirus(66.67%)	3	NA	NA
WP_012492026.1|1418775_1420758_+|tRNA	methionine--tRNA ligase	tRNA	A0A1V0SHR2	Klosneuvirus	37.1	1.5e-93
WP_012492025.1|1420875_1422792_-	ABC transporter ATP-binding protein	NA	F2Y2R6	Organic_Lake_phycodnavirus	27.1	3.0e-19
WP_012492024.1|1422778_1424602_-	ABC transporter ATP-binding protein	NA	F2Y302	Organic_Lake_phycodnavirus	34.2	2.9e-19
>prophage 81
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1434748	1440271	3035735		Tupanvirus(50.0%)	5	NA	NA
WP_012492016.1|1434748_1435399_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	33.5	4.7e-17
WP_003567724.1|1435632_1436481_+	pur operon repressor	NA	A0A1V0SKE5	Klosneuvirus	26.4	1.1e-05
WP_003581115.1|1436477_1437671_+	RDD family protein	NA	NA	NA	NA	NA
WP_003581112.1|1437810_1439199_+	bifunctional UDP-N-acetylglucosamine diphosphorylase/glucosamine-1-phosphate N-acetyltransferase GlmU	NA	A0A2K9L821	Tupanvirus	33.6	2.8e-27
WP_003567718.1|1439296_1440271_+	ribose-phosphate diphosphokinase	NA	A0A2K9L8D8	Tupanvirus	36.4	6.8e-44
>prophage 82
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1444129	1445482	3035735		uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_003576490.1|1444129_1445482_-	HD domain-containing protein	NA	A0A1B1ISR1	uncultured_Mediterranean_phage	32.8	1.6e-30
>prophage 83
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1449208	1450813	3035735		Only_Syngen_Nebraska_virus(100.0%)	1	NA	NA
WP_003567691.1|1449208_1450813_+	CTP synthase	NA	A0A1J0FA14	Only_Syngen_Nebraska_virus	48.9	4.1e-139
>prophage 84
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1457807	1462397	3035735		Diachasmimorpha_longicaudata_entomopoxvirus(25.0%)	6	NA	NA
WP_003567670.1|1457807_1459316_+	DEAD/DEAH box helicase	NA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	39.3	4.1e-72
WP_003567669.1|1459485_1459860_+	holo-ACP synthase	NA	NA	NA	NA	NA
WP_003576478.1|1459846_1460983_+	alanine racemase	NA	A0A0P0YM39	Yellowstone_lake_mimivirus	31.8	1.4e-35
WP_014566665.1|1461050_1461299_+	antitoxin	NA	NA	NA	NA	NA
WP_003567661.1|1461318_1461702_+	type II toxin-antitoxin system PemK/MazF family toxin	NA	A0A2K9V2U7	Faecalibacterium_phage	36.1	1.2e-09
WP_012492007.1|1461875_1462397_+	QueT transporter family protein	NA	E7DN70	Pneumococcus_phage	32.3	4.6e-07
>prophage 85
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1484413	1488475	3035735	tRNA	Chrysochromulina_ericina_virus(33.33%)	3	NA	NA
WP_012491998.1|1484413_1485724_+|tRNA	tRNA lysidine(34) synthetase TilS	tRNA	A0A0N7G7K4	Chrysochromulina_ericina_virus	25.9	3.4e-06
WP_012491997.1|1485720_1486266_+	hypoxanthine phosphoribosyltransferase	NA	A0A218MMB5	uncultured_virus	32.8	1.1e-11
WP_003567624.1|1486327_1488475_+	ATP-dependent metallopeptidase FtsH/Yme1/Tma family protein	NA	A9YVR1	Ostreococcus_tauri_virus	50.3	1.2e-109
>prophage 86
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1496952	1498452	3035735	tRNA	Tupanvirus(100.0%)	1	NA	NA
WP_003567617.1|1496952_1498452_+|tRNA	lysine--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	38.4	9.7e-90
>prophage 87
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1505513	1515625	3035735	protease	Enterobacteria_phage(33.33%)	3	NA	NA
WP_012491991.1|1505513_1508021_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	H6X3M6	Enterobacteria_phage	35.0	1.4e-125
WP_003567588.1|1508350_1511950_+	DNA-directed RNA polymerase subunit beta	NA	A0A1B1ISA9	uncultured_Mediterranean_phage	24.0	5.6e-51
WP_012491989.1|1511962_1515625_+	DNA-directed RNA polymerase subunit beta'	NA	R4TQM7	Phaeocystis_globosa_virus	24.2	1.9e-62
>prophage 88
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1526774	1528877	3035735		Streptococcus_phage(100.0%)	1	NA	NA
WP_003567574.1|1526774_1528877_+	elongation factor G	NA	E4ZFJ7	Streptococcus_phage	27.8	4.1e-62
>prophage 89
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1547073	1548752	3035735		Planktothrix_phage(50.0%)	2	NA	NA
WP_003580999.1|1547073_1547910_+	energy-coupling factor ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	32.9	3.3e-23
WP_014566656.1|1547885_1548752_+	energy-coupling factor ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	31.2	2.9e-14
>prophage 90
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1551820	1552531	3035735		Planktothrix_phage(100.0%)	1	NA	NA
WP_012491979.1|1551820_1552531_-	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.9	1.7e-31
>prophage 91
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1562039	1616607	3035735	bacteriocin,protease,transposase	unidentified_phage(22.22%)	56	NA	NA
WP_014566652.1|1562039_1562741_+	ATP-binding cassette domain-containing protein	NA	G3M9Y6	Bacillus_virus	39.8	1.6e-31
WP_012491969.1|1562737_1563970_+	acyltransferase	NA	NA	NA	NA	NA
WP_012491968.1|1563926_1565459_+	AMP-binding protein	NA	Q75ZG1	Hepacivirus	30.1	2.0e-29
WP_012491967.1|1565448_1566423_+	aliphatic sulfonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003599410.1|1566803_1567733_+|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_003606005.1|1567848_1568652_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_003567451.1|1568648_1569431_-	phosphonate ABC transporter, permease protein PhnE	NA	NA	NA	NA	NA
WP_003567449.1|1569430_1570204_-	phosphonate ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	38.3	1.6e-24
WP_003567447.1|1570263_1571211_-	phosphate/phosphite/phosphonate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012491966.1|1571592_1571853_-	2-phosphoglycerate dehydratase	NA	W6LP63	Streptococcus_phage	61.8	5.0e-10
WP_014566651.1|1572027_1572315_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003567441.1|1572904_1573315_+	CrcB family protein	NA	NA	NA	NA	NA
WP_012491964.1|1573308_1573662_+	CrcB family protein	NA	NA	NA	NA	NA
WP_014566650.1|1573828_1575670_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_126139151.1|1575904_1577089_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491961.1|1577263_1579657_+	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA	NA
WP_003567431.1|1580261_1580411_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003585593.1|1580654_1581557_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012491960.1|1581707_1583543_-	membrane protein	NA	NA	NA	NA	NA
WP_003599857.1|1583805_1584330_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491959.1|1584486_1585119_+	NUDIX hydrolase N-terminal domain-containing protein	NA	NA	NA	NA	NA
WP_003567422.1|1585236_1585878_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_003576335.1|1586117_1587035_-	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003567418.1|1587235_1587355_+	putative metal homeostasis protein	NA	NA	NA	NA	NA
WP_003599410.1|1587393_1588323_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_012491958.1|1588490_1588760_+	30S ribosomal protein S14	NA	NA	NA	NA	NA
WP_012491957.1|1588960_1590427_+	aldehyde dehydrogenase	NA	NA	NA	NA	NA
WP_003567413.1|1590702_1591446_+	metal ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	25.9	1.1e-12
WP_012491956.1|1591442_1592339_+	metal ABC transporter permease	NA	NA	NA	NA	NA
WP_003567408.1|1592335_1593277_+	zinc ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003567405.1|1593397_1593730_-	winged helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003567403.1|1593750_1594389_-	cation transporter	NA	NA	NA	NA	NA
WP_003567401.1|1594517_1594709_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491954.1|1594954_1596484_+	multicopper oxidase domain-containing protein	NA	NA	NA	NA	NA
WP_003585579.1|1596523_1597897_+	MFS transporter	NA	NA	NA	NA	NA
WP_003580900.1|1598050_1598416_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003596096.1|1598715_1601433_-	HAD-IC family P-type ATPase	NA	M1HJQ2	Paramecium_bursaria_Chlorella_virus	29.1	1.2e-61
WP_014566645.1|1601820_1603428_+	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_012491953.1|1603719_1604478_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491952.1|1604610_1605987_+	class II fumarate hydratase	NA	NA	NA	NA	NA
WP_012491951.1|1606497_1607661_-	NADH-dependent flavin oxidoreductase	NA	NA	NA	NA	NA
WP_003580891.1|1607686_1608421_-	SDR family oxidoreductase	NA	NA	NA	NA	NA
WP_014566644.1|1608625_1609579_+	aldo/keto reductase	NA	A0A1V0SDE7	Indivirus	24.6	4.8e-10
WP_003567376.1|1609850_1610084_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003567374.1|1610080_1610296_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491950.1|1610431_1610740_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003580888.1|1611010_1611607_+	sugar O-acetyltransferase	NA	NA	NA	NA	NA
WP_003580886.1|1611725_1612061_+|bacteriocin	bacteriocin immunity protein	bacteriocin	NA	NA	NA	NA
WP_003588837.1|1612379_1612571_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566643.1|1612551_1613220_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_003599808.1|1613475_1613808_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491948.1|1613923_1614082_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491947.1|1614370_1615171_+|protease	CPBP family intramembrane metalloprotease	protease	NA	NA	NA	NA
WP_014566641.1|1615408_1615573_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491945.1|1615887_1616112_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003591780.1|1616433_1616607_+|bacteriocin	ComC/BlpC family leader-containing pheromone/bacteriocin	bacteriocin	NA	NA	NA	NA
>prophage 92
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1630802	1631432	3035735		Bacillus_phage(100.0%)	1	NA	NA
WP_012491936.1|1630802_1631432_-	helix-turn-helix transcriptional regulator	NA	A0A0S2MVM8	Bacillus_phage	37.5	1.2e-06
>prophage 93
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1645115	1647294	3035735		Streptococcus_phage(100.0%)	2	NA	NA
WP_012491929.1|1645115_1645949_+	glutamate 5-kinase	NA	A0A1X9I5D0	Streptococcus_phage	42.4	9.6e-47
WP_003576247.1|1646037_1647294_+	glutamate-5-semialdehyde dehydrogenase	NA	A0A1X9I5D4	Streptococcus_phage	56.8	7.3e-99
>prophage 94
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1661579	1674659	3035735		Vibrio_phage(16.67%)	10	NA	NA
WP_012491920.1|1661579_1664210_+	pyruvate, phosphate dikinase	NA	H8YJB7	Vibrio_phage	40.2	8.4e-89
WP_014566629.1|1664366_1666421_-	KUP/HAK/KT family potassium transporter	NA	M1IAJ4	Acanthocystis_turfacea_Chlorella_virus	33.3	1.2e-63
WP_003576231.1|1666582_1667461_-	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.4	1.2e-12
WP_012491919.1|1667523_1668720_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491918.1|1668716_1669817_-	ABC transporter	NA	NA	NA	NA	NA
WP_003576225.1|1670044_1671391_-	C1 family peptidase	NA	A0A2H4UTL8	Bodo_saltans_virus	29.8	6.9e-47
WP_012491917.1|1671547_1672867_-	C1 family peptidase	NA	R4TV59	Phaeocystis_globosa_virus	34.5	9.2e-60
WP_003567260.1|1673111_1673489_+	DUF805 domain-containing protein	NA	NA	NA	NA	NA
WP_003567258.1|1673605_1673896_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_003567256.1|1674116_1674659_+	dUTP diphosphatase	NA	J9PV85	Bacillus_phage	48.6	8.1e-39
>prophage 95
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1678359	1679247	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_012491915.1|1678359_1679247_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	40.0	4.4e-34
>prophage 96
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1683377	1685271	3035735		Staphylococcus_phage(50.0%)	2	NA	NA
WP_012491910.1|1683377_1684172_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	34.5	6.6e-21
WP_012491909.1|1684308_1685271_+	winged helix-turn-helix transcriptional regulator	NA	A0A218MNF3	uncultured_virus	36.2	6.1e-05
>prophage 97
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1695538	1696945	3035735	tRNA	Catovirus(100.0%)	1	NA	NA
WP_003659543.1|1695538_1696945_+|tRNA	cysteine--tRNA ligase	tRNA	A0A1V0SAQ2	Catovirus	30.4	5.7e-52
>prophage 98
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1702555	1703533	3035735		Indivirus(100.0%)	1	NA	NA
WP_012491898.1|1702555_1703533_-	polyprenyl synthetase family protein	NA	A0A1V0SE37	Indivirus	23.7	6.2e-05
>prophage 99
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1711584	1715913	3035735		Bacillus_virus(33.33%)	4	NA	NA
WP_003567176.1|1711584_1712139_+	transcription termination/antitermination protein NusG	NA	G3MAW2	Bacillus_virus	27.1	2.9e-07
WP_003571354.1|1712148_1712994_+	alpha/beta fold hydrolase	NA	NA	NA	NA	NA
WP_003580735.1|1713031_1713475_+	nucleoside 2-deoxyribosyltransferase	NA	K4I206	Lactobacillus_phage	28.1	1.9e-09
WP_012491896.1|1713666_1715913_+	ribonucleoside-triphosphate reductase, adenosylcobalamin-dependent	NA	A0A2K9VI66	Mycobacterium_phage	33.3	3.3e-86
>prophage 100
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1719585	1722216	3035735		Acanthocystis_turfacea_Chlorella_virus(100.0%)	1	NA	NA
WP_003607178.1|1719585_1722216_+	magnesium-translocating P-type ATPase	NA	M1IAU8	Acanthocystis_turfacea_Chlorella_virus	25.6	1.3e-44
>prophage 101
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1744574	1751557	3035735		Streptococcus_phage(80.0%)	9	NA	NA
WP_012491889.1|1744574_1746272_+	DNA polymerase III subunit gamma/tau	NA	A0A1U9WR94	Streptococcus_virus	44.4	3.0e-55
WP_003607168.1|1746288_1746597_+	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA	NA
WP_003567101.1|1746912_1747512_+	recombination protein RecR	NA	NA	NA	NA	NA
WP_003567100.1|1747511_1747775_+	YaaL family protein	NA	NA	NA	NA	NA
WP_003580656.1|1748369_1749014_+	dTMP kinase	NA	M1PSC7	Streptococcus_phage	53.1	4.0e-53
WP_003567098.1|1749048_1749378_+	cyclic-di-AMP receptor	NA	NA	NA	NA	NA
WP_003588621.1|1749377_1750355_+	DNA polymerase III subunit delta'	NA	M1NSC1	Streptococcus_phage	27.8	1.1e-25
WP_003567092.1|1750359_1750698_+	DNA replication initiation control protein YabA	NA	M1PFV3	Streptococcus_phage	38.9	4.6e-16
WP_003588618.1|1750699_1751557_+	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	NA	M1PLC5	Streptococcus_phage	55.4	5.5e-74
>prophage 102
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1757314	1760997	3035735	tRNA	Moraxella_phage(50.0%)	3	NA	NA
WP_003567073.1|1757314_1758340_+|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	tRNA	A0A0R6PI74	Moraxella_phage	42.0	5.4e-60
WP_003567071.1|1758435_1758771_+	PTS sugar transporter subunit IIB	NA	NA	NA	NA	NA
WP_003576137.1|1759044_1760997_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	30.8	7.4e-58
>prophage 103
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1766284	1768237	3035735		uncultured_virus(100.0%)	2	NA	NA
WP_003567052.1|1766284_1766566_+	co-chaperone GroES	NA	A0A221S322	uncultured_virus	39.6	2.7e-14
WP_003567042.1|1766602_1768237_+	chaperonin GroEL	NA	A0A219YK78	uncultured_virus	55.9	2.1e-154
>prophage 104
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1771387	1775921	3035735		Indivirus(50.0%)	2	NA	NA
WP_012491883.1|1771387_1773961_+	DNA mismatch repair protein MutS	NA	A0A1V0SDQ0	Indivirus	24.3	1.5e-37
WP_003606620.1|1773965_1775921_+	DNA mismatch repair endonuclease MutL	NA	A0A1B2LRQ5	Wolbachia_phage	31.5	1.7e-62
>prophage 105
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1782197	1783232	3035735		Lactobacillus_virus(100.0%)	1	NA	NA
WP_003576121.1|1782197_1783232_+	hydrolase	NA	C1KFL4	Lactobacillus_virus	62.5	9.2e-23
>prophage 106
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1788508	1789507	3035735	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_012491878.1|1788508_1789507_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	38.4	3.2e-49
>prophage 107
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1798123	1805548	3035735		Bacillus_phage(66.67%)	5	NA	NA
WP_012491876.1|1798123_1799428_+	pyrimidine-nucleoside phosphorylase	NA	A0A0H3UZD4	Geobacillus_virus	50.5	5.8e-115
WP_003576111.1|1799666_1801091_+	cytochrome ubiquinol oxidase subunit I	NA	NA	NA	NA	NA
WP_003571229.1|1801087_1802101_+	cytochrome d ubiquinol oxidase subunit II	NA	NA	NA	NA	NA
WP_014566618.1|1802097_1803840_+	thiol reductant ABC exporter subunit CydD	NA	W8CYL7	Bacillus_phage	22.4	4.5e-22
WP_003588557.1|1803820_1805548_+	thiol reductant ABC exporter subunit CydC	NA	W8CYL7	Bacillus_phage	22.4	7.6e-22
>prophage 108
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1816590	1822055	3035735	transposase	Lactobacillus_phage(66.67%)	5	NA	NA
WP_012491868.1|1816590_1817433_-|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	98.9	3.9e-157
WP_002816285.1|1817486_1817738_-|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	96.4	9.2e-38
WP_003605793.1|1818113_1818539_+	NusG domain II-containing protein	NA	NA	NA	NA	NA
WP_003605791.1|1818735_1820427_+	ATP-binding cassette domain-containing protein	NA	NA	NA	NA	NA
WP_003605790.1|1820423_1822055_+	ABC transporter ATP-binding protein	NA	F2Y165	Organic_Lake_phycodnavirus	30.9	1.4e-17
>prophage 109
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1837752	1842709	3035735		Staphylococcus_phage(66.67%)	6	NA	NA
WP_003605773.1|1837752_1838538_+	SDR family oxidoreductase	NA	A0A0M4JSW6	Mollivirus	27.5	1.0e-13
WP_003599588.1|1838645_1839290_-	ABC-2 transporter permease	NA	NA	NA	NA	NA
WP_126139148.1|1839282_1840149_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.5	3.7e-17
WP_003566897.1|1840138_1840534_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003605763.1|1840547_1841819_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003566893.1|1841821_1842709_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	28.2	6.7e-22
>prophage 110
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1851854	1854243	3035735		Organic_Lake_phycodnavirus(50.0%)	2	NA	NA
WP_003566883.1|1851854_1853759_+	asparagine synthase (glutamine-hydrolyzing)	NA	F2Y1H0	Organic_Lake_phycodnavirus	29.0	1.1e-26
WP_003605759.1|1853862_1854243_+	HIT family protein	NA	D7NW73	Streptomyces_phage	41.0	1.8e-13
>prophage 111
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1857411	1861689	3035735		Only_Syngen_Nebraska_virus(50.0%)	4	NA	NA
WP_003605746.1|1857411_1858404_+	D-2-hydroxyacid dehydrogenase	NA	A0A1J0F959	Only_Syngen_Nebraska_virus	35.4	5.0e-42
WP_014566616.1|1858420_1859464_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA	NA
WP_012491852.1|1859751_1860132_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003605741.1|1860171_1861689_+	flotillin family protein	NA	L7RD16	Acanthamoeba_polyphaga_moumouvirus	28.7	2.5e-05
>prophage 112
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1869979	1871203	3035735		Bacillus_virus(100.0%)	1	NA	NA
WP_003571116.1|1869979_1871203_+	glycine betaine/L-proline ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	37.0	1.3e-28
>prophage 113
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1882799	1885212	3035735		Paenibacillus_phage(50.0%)	2	NA	NA
WP_003605730.1|1882799_1883267_+	NUDIX hydrolase	NA	D0R7J3	Paenibacillus_phage	34.9	6.2e-19
WP_012491847.1|1883436_1885212_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	41.0	8.7e-106
>prophage 114
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1890847	1891846	3035735	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_003601683.1|1890847_1891846_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
>prophage 115
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1899140	1899869	3035735		Bacillus_phage(100.0%)	1	NA	NA
WP_012491843.1|1899140_1899869_+	3-oxoacyl-ACP reductase FabG	NA	W8CYX9	Bacillus_phage	31.0	3.4e-08
>prophage 116
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1905607	1906789	3035735		Orpheovirus(100.0%)	1	NA	NA
WP_003580332.1|1905607_1906789_+	class I SAM-dependent methyltransferase	NA	A0A2I2L5L3	Orpheovirus	31.3	9.1e-43
>prophage 117
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1925415	1926342	3035735	integrase	Listeria_phage(100.0%)	1	1924833:1924854	1928269:1928290
1924833:1924854	attL	ACGCTTGGGAAAAGCGTAAGTT	NA	NA	NA	NA
WP_014566609.1|1925415_1926342_-|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.3	4.0e-78
WP_014566609.1|1925415_1926342_-|integrase	site-specific integrase	integrase	A8ATM2	Listeria_phage	48.3	4.0e-78
1928269:1928290	attR	AACTTACGCTTTTCCCAAGCGT	NA	NA	NA	NA
>prophage 118
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1939407	1941864	3035735		Bacillus_phage(100.0%)	1	NA	NA
WP_014566602.1|1939407_1941864_+	AAA family ATPase	NA	U5J9B0	Bacillus_phage	26.4	6.1e-49
>prophage 119
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1956778	1957777	3035735	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_003601683.1|1956778_1957777_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
>prophage 120
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1963959	1968018	3035735		Planktothrix_phage(33.33%)	5	NA	NA
WP_003566704.1|1963959_1965012_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	33.0	4.3e-20
WP_003566702.1|1965013_1965991_+	ATP-binding cassette domain-containing protein	NA	Q6GZ03	Mycoplasma_phage	34.1	5.8e-11
WP_012491812.1|1966299_1966938_+	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_003566698.1|1967197_1967509_+	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_003566696.1|1967793_1968018_+	DUF2829 domain-containing protein	NA	A8AT88	Listeria_phage	34.4	1.0e-08
>prophage 121
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1982098	1985503	3035735		Escherichia_phage(50.0%)	4	NA	NA
WP_012491798.1|1982098_1982971_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	58.9	1.1e-98
WP_003575756.1|1982982_1983555_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	43.0	3.2e-33
WP_012491797.1|1983557_1984583_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	44.0	4.0e-71
WP_012491796.1|1984657_1985503_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.5	5.5e-34
>prophage 122
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1993108	1995259	3035735	protease	Klebsiella_phage(100.0%)	1	NA	NA
WP_012491789.1|1993108_1995259_+|protease	ATP-dependent Clp protease ATP-binding subunit	protease	A0A0A8J958	Klebsiella_phage	36.7	1.8e-121
>prophage 123
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	1999124	1999955	3035735		Streptococcus_phage(100.0%)	1	NA	NA
WP_003585277.1|1999124_1999955_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	26.9	8.4e-19
>prophage 124
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2008948	2011357	3035735		Iris_mild_mosaic_virus(100.0%)	1	NA	NA
WP_003566615.1|2008948_2011357_+	glycogen/starch/alpha-glucan phosphorylase	NA	Q8B3H5	Iris_mild_mosaic_virus	42.0	1.2e-12
>prophage 125
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2016924	2080048	3035735	holin,integrase,transposase,tRNA	Bacillus_phage(12.5%)	60	2052762:2052777	2069333:2069348
WP_003570829.1|2016924_2018199_+|tRNA	tyrosine--tRNA ligase	tRNA	A0A1L2CUL7	Pectobacterium_phage	43.1	2.7e-85
WP_012491782.1|2018506_2019724_+	C40 family peptidase	NA	D2KRB9	Lactobacillus_phage	37.0	6.6e-12
WP_012491781.1|2019830_2020238_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003585182.1|2020354_2020957_+	guanylate kinase	NA	U5J9X2	Bacillus_phage	31.0	3.6e-11
WP_003566579.1|2021026_2021140_-	putative metal homeostasis protein	NA	NA	NA	NA	NA
WP_003566577.1|2021248_2021695_+	transcriptional repressor	NA	NA	NA	NA	NA
WP_003580085.1|2021986_2022427_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491780.1|2022447_2023434_+	hypothetical protein	NA	NA	NA	NA	NA
WP_004561979.1|2023856_2024588_+	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	41.3	2.7e-37
WP_012491779.1|2024715_2025540_+	glutamate ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003566566.1|2025541_2026186_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_014566588.1|2026201_2026864_+	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003575764.1|2027007_2027958_+	NAD-dependent epimerase/dehydratase family protein	NA	A0A1V0SKV4	Klosneuvirus	32.6	3.3e-35
WP_003575762.1|2028114_2029515_+	sugar transferase	NA	NA	NA	NA	NA
WP_012491776.1|2029654_2030509_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491775.1|2030938_2031811_+	glucose-1-phosphate thymidylyltransferase RfbA	NA	K7QKA7	Escherichia_phage	58.9	2.5e-98
WP_003575756.1|2031822_2032395_+	dTDP-4-dehydrorhamnose 3,5-epimerase	NA	I7HJC4	Enterobacteria_phage	43.0	3.2e-33
WP_014566587.1|2032397_2033423_+	dTDP-glucose 4,6-dehydratase	NA	I7HTA3	Enterobacteria_phage	43.4	9.0e-71
WP_003575752.1|2033497_2034340_+	dTDP-4-dehydrorhamnose reductase	NA	A0A291LA50	Escherichia_phage	39.5	5.5e-34
WP_003575749.1|2034664_2035723_+	C39 family peptidase	NA	NA	NA	NA	NA
WP_012491774.1|2036087_2036603_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003575745.1|2036599_2037994_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491773.1|2038257_2039790_-	glucosyltransferase domain-containing protein	NA	NA	NA	NA	NA
WP_003575742.1|2040170_2041169_+	polysaccharide deacetylase	NA	NA	NA	NA	NA
WP_012491772.1|2041306_2042602_-	GTPase HflX	NA	NA	NA	NA	NA
WP_003575738.1|2042739_2043621_-	diacylglycerol kinase family lipid kinase	NA	NA	NA	NA	NA
WP_012491770.1|2043756_2045412_-	amino acid permease	NA	NA	NA	NA	NA
WP_003566323.1|2045712_2046471_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	39.1	1.9e-33
WP_012491769.1|2046483_2048292_+	FtsX-like permease family protein	NA	NA	NA	NA	NA
WP_003566320.1|2048642_2049302_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_012491768.1|2049459_2050425_+	ferrochelatase	NA	NA	NA	NA	NA
WP_012491767.1|2050411_2051764_+	Nramp family divalent metal transporter	NA	NA	NA	NA	NA
WP_012491766.1|2051875_2052337_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003566310.1|2052394_2053300_-	proline-specific peptidase family protein	NA	NA	NA	NA	NA
2052762:2052777	attL	TCCACATATTTCTGAT	NA	NA	NA	NA
WP_012491765.1|2053355_2055185_-	monovalent cation:proton antiporter family protein	NA	NA	NA	NA	NA
WP_003602825.1|2055256_2055451_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491764.1|2055661_2057953_+	ATP-binding domain-containing protein	NA	NA	NA	NA	NA
WP_012491763.1|2057957_2058434_+	acyl-CoA thioesterase	NA	NA	NA	NA	NA
WP_003570749.1|2058766_2060176_+	C69 family dipeptidase	NA	NA	NA	NA	NA
WP_003575717.1|2060239_2060530_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003575714.1|2060576_2060939_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003566294.1|2061094_2062021_+	type I pantothenate kinase	NA	A0A1B1ISL9	uncultured_Mediterranean_phage	32.9	4.1e-30
WP_003566292.1|2062193_2063747_+	glutamine-hydrolyzing GMP synthase	NA	A0A1V0SH76	Hokovirus	28.4	1.8e-14
WP_012491762.1|2063811_2065005_-|integrase	site-specific integrase	integrase	A0A0S2MV79	Bacillus_phage	32.2	1.6e-39
WP_014566586.1|2065008_2065257_-	DUF3173 family protein	NA	NA	NA	NA	NA
WP_004559579.1|2065612_2065864_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA	NA
WP_004559580.1|2065884_2066283_-	sigma-70 family RNA polymerase sigma factor	NA	NA	NA	NA	NA
WP_016366370.1|2066525_2066729_-	hypothetical protein	NA	NA	NA	NA	NA
WP_021353390.1|2067277_2067367_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_014566585.1|2067552_2067753_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002816607.1|2067812_2068496_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.8	2.1e-60
WP_012491760.1|2068767_2070387_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
2069333:2069348	attR	ATCAGAAATATGTGGA	NA	NA	NA	NA
WP_012491759.1|2070415_2071501_+	M42 family peptidase	NA	NA	NA	NA	NA
WP_014566584.1|2071500_2072358_+	M55 family metallopeptidase	NA	NA	NA	NA	NA
WP_012491757.1|2072361_2073258_+	proline iminopeptidase-family hydrolase	NA	NA	NA	NA	NA
WP_003599410.1|2073371_2074301_+|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_003595460.1|2074584_2075493_-	magnesium transporter CorA family protein	NA	NA	NA	NA	NA
WP_101869771.1|2076751_2077869_-|transposase	IS3 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	32.6	1.0e-27
WP_012491754.1|2078041_2078563_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123796558.1|2079260_2080048_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
>prophage 126
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2087793	2089652	3035735	protease,transposase	unidentified_phage(50.0%)	2	NA	NA
WP_003599410.1|2087793_2088723_-|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
WP_012491745.1|2088890_2089652_-|protease	matrixin family metalloprotease	protease	G9I094	Helicoverpa_zea_nudivirus	53.1	1.7e-05
>prophage 127
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2094961	2098208	3035735		Staphylococcus_phage(50.0%)	2	NA	NA
WP_012491742.1|2094961_2096563_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	26.4	2.6e-08
WP_012491741.1|2096552_2098208_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	21.2	4.0e-12
>prophage 128
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2104606	2112037	3035735		Planktothrix_phage(33.33%)	9	NA	NA
WP_003573219.1|2104606_2105695_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.1	8.7e-16
WP_012491738.1|2105691_2106570_+	ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_012491737.1|2106592_2107144_+	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_014566578.1|2107211_2107952_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003573229.1|2107944_2108661_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	24.3	2.1e-10
WP_012491735.1|2108650_2109028_-	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003573233.1|2109203_2110061_+	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012491734.1|2110145_2111180_-	helix-turn-helix transcriptional regulator	NA	NA	NA	NA	NA
WP_012491733.1|2111299_2112037_-	sulfite exporter TauE/SafE family protein	NA	Q6EVM7	Oenoccocus_phage	43.2	1.4e-46
>prophage 129
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2115934	2116852	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_012491730.1|2115934_2116852_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	27.5	7.6e-21
>prophage 130
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2120596	2121163	3035735		Bacillus_virus(100.0%)	1	NA	NA
WP_003566199.1|2120596_2121163_+	RNA 2'-phosphotransferase	NA	G3MA21	Bacillus_virus	36.0	2.0e-19
>prophage 131
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2132755	2136690	3035735		Leuconostoc_phage(50.0%)	5	NA	NA
WP_003566163.1|2132755_2133181_-	hypothetical protein	NA	E3W8I0	Leuconostoc_phage	35.8	1.4e-06
WP_012491721.1|2133404_2133986_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003566159.1|2134137_2134947_-	alpha/beta hydrolase	NA	NA	NA	NA	NA
WP_012491720.1|2135087_2135951_+	RluA family pseudouridine synthase	NA	NA	NA	NA	NA
WP_012491719.1|2136072_2136690_-	superoxide dismutase	NA	Q56AR7	Bacillus_thuringiensis_phage	53.5	4.0e-58
>prophage 132
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2149332	2150616	3035735	tRNA	uncultured_Mediterranean_phage(100.0%)	1	NA	NA
WP_012491713.1|2149332_2150616_+|tRNA	serine--tRNA ligase	tRNA	A0A1B1IVT2	uncultured_Mediterranean_phage	48.0	1.8e-84
>prophage 133
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2169764	2173901	3035735		Planktothrix_phage(50.0%)	2	NA	NA
WP_126139146.1|2169764_2172083_+	ABC transporter ATP-binding protein/permease	NA	G9BWD6	Planktothrix_phage	40.1	2.8e-35
WP_003566109.1|2172434_2173901_+	peptide MFS transporter	NA	A0A0P0IY73	Acinetobacter_phage	35.9	8.9e-72
>prophage 134
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2177107	2191989	3035735		Bacillus_virus(33.33%)	11	NA	NA
WP_003566103.1|2177107_2177905_+	pyrroline-5-carboxylate reductase	NA	A0A1X9I6T5	Streptococcus_phage	38.3	6.2e-35
WP_126139145.1|2178011_2179157_+	N-acetylglucosamine-6-phosphate deacetylase	NA	NA	NA	NA	NA
WP_003566099.1|2179181_2179883_+	GntR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003605399.1|2180412_2181876_+	nicotinate phosphoribosyltransferase	NA	G3MA18	Bacillus_virus	42.7	2.0e-100
WP_012491706.1|2181879_2183073_+	serine hydrolase	NA	A0A2R4AS58	Mycobacterium_phage	27.0	9.3e-11
WP_003566083.1|2183075_2183903_+	ammonia-dependent NAD(+) synthetase	NA	G3MA24	Bacillus_virus	53.6	2.7e-70
WP_004559617.1|2184168_2185326_+	serine hydrolase	NA	NA	NA	NA	NA
WP_014566570.1|2185634_2188295_+	cation-translocating P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	29.8	1.4e-75
WP_012491705.1|2188431_2188869_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003575502.1|2190344_2191244_+	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003579766.1|2191236_2191989_+	ATP-binding cassette domain-containing protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	27.4	1.9e-09
>prophage 135
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2202626	2204381	3035735		Ostreococcus_lucimarinus_virus(100.0%)	1	NA	NA
WP_003566048.1|2202626_2204381_+	pyruvate oxidase	NA	A0A0P0CDR3	Ostreococcus_lucimarinus_virus	27.5	1.1e-39
>prophage 136
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2209700	2211826	3035735		Lactococcus_phage(50.0%)	2	NA	NA
WP_012491694.1|2209700_2210174_-	nucleoside 2-deoxyribosyltransferase	NA	A0A1W6JL37	Lactococcus_phage	56.2	3.5e-38
WP_012491693.1|2210458_2211826_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	D0R096	Streptococcus_phage	34.2	8.8e-74
>prophage 138
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2252198	2258000	3035735	tRNA	Paramecium_bursaria_Chlorella_virus(33.33%)	5	NA	NA
WP_012491677.1|2252198_2254013_-	glycerophosphoryl diester phosphodiesterase membrane domain-containing protein	NA	M1HTS7	Paramecium_bursaria_Chlorella_virus	28.1	1.3e-08
WP_003579616.1|2254009_2254948_-	dihydroorotate oxidase	NA	A0A1V0SH91	Hokovirus	41.7	4.4e-56
WP_003599030.1|2255277_2255460_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003565937.1|2255473_2255860_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003565935.1|2256317_2258000_+|tRNA	arginine--tRNA ligase	tRNA	A0A2I2L3K1	Orpheovirus	31.3	1.2e-72
>prophage 139
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2265560	2266289	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003565914.1|2265560_2266289_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.4	4.8e-26
>prophage 140
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2271111	2288031	3035735	tRNA	Mycobacterium_virus(16.67%)	15	NA	NA
WP_003599009.1|2271111_2273571_+	DNA translocase FtsK	NA	G1D482	Mycobacterium_virus	48.7	5.1e-88
WP_012491674.1|2273567_2274878_+	UDP-N-acetylmuramate--L-alanine ligase	NA	NA	NA	NA	NA
WP_003599006.1|2275038_2275749_+	Bax inhibitor-1/YccA family protein	NA	NA	NA	NA	NA
WP_014566560.1|2275911_2278557_+	DNA polymerase I	NA	E7DND5	Pneumococcus_phage	29.4	6.6e-41
WP_003599001.1|2278567_2279416_+	bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase	NA	G3MA33	Bacillus_virus	36.3	4.5e-36
WP_003598999.1|2279412_2280015_+	dephospho-CoA kinase	NA	NA	NA	NA	NA
WP_003565887.1|2280069_2280537_+	transcriptional repressor NrdR	NA	NA	NA	NA	NA
WP_003579580.1|2280616_2281963_+	DnaD domain protein	NA	NA	NA	NA	NA
WP_003570519.1|2281962_2282898_+	primosomal protein DnaI	NA	S5MU12	Brevibacillus_phage	40.1	1.5e-27
WP_014952027.1|2282940_2283372_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003570517.1|2283426_2285400_+|tRNA	threonine--tRNA ligase	tRNA	A0A2K9L6B6	Tupanvirus	33.3	1.0e-94
WP_012491671.1|2285520_2286090_-	histidine phosphatase family protein	NA	NA	NA	NA	NA
WP_003588070.1|2286239_2286629_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566558.1|2286621_2287317_+	enhanced serine sensitivity protein SseB	NA	NA	NA	NA	NA
WP_079321789.1|2287527_2288031_+	translation initiation factor IF-3	NA	A0A2L0UZ54	Agrobacterium_phage	34.8	2.9e-14
>prophage 141
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2300291	2304252	3035735		Ostreococcus_lucimarinus_virus(33.33%)	3	NA	NA
WP_012491667.1|2300291_2301710_+	NADP-dependent phosphogluconate dehydrogenase	NA	A0A0P0C6S9	Ostreococcus_lucimarinus_virus	29.2	1.7e-40
WP_003565833.1|2301979_2302666_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	31.5	3.3e-29
WP_003575392.1|2302665_2304252_+	HAMP domain-containing protein	NA	Q8QNA2	Ectocarpus_siliculosus_virus	34.5	7.2e-11
>prophage 142
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2308657	2309704	3035735	tRNA	Orpheovirus(100.0%)	1	NA	NA
WP_003598969.1|2308657_2309704_+|tRNA	phenylalanine--tRNA ligase subunit alpha	tRNA	A0A2I2L4E3	Orpheovirus	35.3	9.6e-28
>prophage 143
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2313584	2314223	3035735		Catovirus(100.0%)	1	NA	NA
WP_003575382.1|2313584_2314223_+	uridine kinase	NA	A0A1V0SAA3	Catovirus	38.4	5.4e-34
>prophage 144
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2320346	2321345	3035735	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_003601683.1|2320346_2321345_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
>prophage 145
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2342006	2344200	3035735		Enterococcus_phage(50.0%)	2	NA	NA
WP_003575343.1|2342006_2342858_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	NA	A0A249XZQ2	Enterococcus_phage	38.3	8.0e-33
WP_012491654.1|2342850_2344200_+	exodeoxyribonuclease VII large subunit	NA	A0A1V0SIT1	Klosneuvirus	31.6	3.2e-36
>prophage 146
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2349835	2359646	3035735	tRNA	Abalone_herpesvirus(25.0%)	8	NA	NA
WP_003564691.1|2349835_2350462_+	guanylate kinase	NA	K4JYM5	Abalone_herpesvirus	30.3	3.7e-19
WP_003564692.1|2350528_2350777_+	DNA-directed RNA polymerase subunit omega	NA	NA	NA	NA	NA
WP_003594703.1|2350923_2352123_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	NA	Q9HH70	Methanothermobacter_phage	32.3	6.0e-34
WP_003594700.1|2352127_2354545_+	primosomal protein N'	NA	NA	NA	NA	NA
WP_003594697.1|2354612_2355569_+|tRNA	methionyl-tRNA formyltransferase	tRNA	E3SNR5	Prochlorococcus_phage	38.1	2.6e-11
WP_012491648.1|2355555_2356896_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA	NA
WP_012491647.1|2356905_2357649_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA	NA
WP_012491646.1|2357645_2359646_+	Stk1 family PASTA domain-containing Ser/Thr kinase	NA	A0A1V0SDC3	Indivirus	31.0	3.1e-19
>prophage 147
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2368455	2371127	3035735		Prochlorococcus_phage(33.33%)	3	NA	NA
WP_003564726.1|2368455_2368698_+	acyl carrier protein	NA	M4QDG5	Prochlorococcus_phage	61.9	9.0e-06
WP_003564728.1|2369147_2370170_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	29.2	2.3e-18
WP_003660720.1|2370173_2371127_+	ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	33.7	1.3e-20
>prophage 148
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2375217	2375913	3035735		Powai_lake_megavirus(100.0%)	1	NA	NA
WP_014566548.1|2375217_2375913_+	ribonuclease III	NA	A0A167RGU4	Powai_lake_megavirus	29.4	5.6e-24
>prophage 149
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2387180	2390721	3035735		Bacillus_phage(100.0%)	2	NA	NA
WP_003575296.1|2387180_2388938_+	ATP-binding cassette domain-containing protein	NA	W8CYL7	Bacillus_phage	27.5	1.8e-50
WP_011674545.1|2388927_2390721_+	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	25.2	1.1e-39
>prophage 150
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2399020	2415210	3035735	protease,tRNA	Flavobacterium_phage(20.0%)	12	NA	NA
WP_012491639.1|2399020_2399773_+	isoprenyl transferase	NA	R9W0U9	Flavobacterium_phage	41.9	5.6e-22
WP_003565800.1|2399808_2400597_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA	NA
WP_003565798.1|2400613_2401855_+|protease	RIP metalloprotease RseP	protease	NA	NA	NA	NA
WP_011674540.1|2401879_2403607_+|tRNA	proline--tRNA ligase	tRNA	A0A2K9L3R9	Tupanvirus	29.9	1.1e-07
WP_012491637.1|2403673_2408008_+	PolC-type DNA polymerase III	NA	A0A0A7RWA3	Clostridium_phage	36.0	1.5e-18
WP_003565790.1|2408262_2408742_+	ribosome maturation factor RimP	NA	NA	NA	NA	NA
WP_003565788.1|2408758_2410012_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA	NA
WP_003565786.1|2410023_2410317_+	YlxR family protein	NA	NA	NA	NA	NA
WP_003565784.1|2410319_2410619_+	YlxQ-related RNA-binding protein	NA	NA	NA	NA	NA
WP_014566545.1|2410639_2413471_+	translation initiation factor IF-2	NA	A0A2H4UTS4	Bodo_saltans_virus	40.0	5.8e-19
WP_003565780.1|2413531_2413885_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA	NA
WP_003579352.1|2414418_2415210_+	DUF475 domain-containing protein	NA	S5MAL1	Bacillus_phage	45.1	4.7e-35
>prophage 151
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2420232	2430008	3035735		Chrysochromulina_ericina_virus(20.0%)	8	NA	NA
WP_003594633.1|2420232_2422107_+	molecular chaperone DnaK	NA	A0A0N9QXN8	Chrysochromulina_ericina_virus	51.0	2.0e-140
WP_003565745.1|2422219_2423383_+	molecular chaperone DnaJ	NA	A0A1V0SBY2	Catovirus	27.2	1.4e-24
WP_003575274.1|2423559_2425398_+	elongation factor 4	NA	E4ZFJ7	Streptococcus_phage	26.1	3.1e-21
WP_003565739.1|2425504_2425738_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003605231.1|2425743_2426220_-	ASCH domain-containing protein	NA	NA	NA	NA	NA
WP_003565736.1|2426543_2426915_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491633.1|2427189_2429484_+	single-stranded-DNA-specific exonuclease RecJ	NA	A7KV88	Bacillus_phage	31.6	1.9e-73
WP_003565731.1|2429480_2430008_+	adenine phosphoribosyltransferase	NA	A0A1V0SKE5	Klosneuvirus	41.4	6.5e-25
>prophage 152
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2441085	2447602	3035735	tRNA	Salmonella_phage(33.33%)	6	NA	NA
WP_003598823.1|2441085_2443314_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	NA	J9Q7H7	Salmonella_phage	34.3	1.5e-06
WP_012491630.1|2443434_2443881_+|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	tRNA	NA	NA	NA	NA
WP_011674532.1|2443880_2444507_+	HAD family hydrolase	NA	NA	NA	NA	NA
WP_012491629.1|2444579_2445902_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A0N6W8I1	Bacillus_phage	32.2	6.4e-13
WP_003575225.1|2446040_2446481_-	DeoR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003605204.1|2446726_2447602_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	32.5	1.0e-22
>prophage 153
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2453662	2461134	3035735	tRNA	Tupanvirus(33.33%)	8	NA	NA
WP_012491626.1|2453662_2455468_+|tRNA	aspartate--tRNA ligase	tRNA	A0A2K9KZX5	Tupanvirus	54.3	2.3e-05
WP_003598806.1|2455556_2456009_+	peptide-methionine (R)-S-oxide reductase MsrB	NA	NA	NA	NA	NA
WP_003565679.1|2456100_2457021_+	YitT family protein	NA	NA	NA	NA	NA
WP_003598804.1|2457156_2458044_+	deoxyribonuclease IV	NA	A0A2H4UU70	Bodo_saltans_virus	27.7	1.0e-22
WP_003565675.1|2458040_2458871_-	kinase/pyrophosphorylase	NA	NA	NA	NA	NA
WP_003565673.1|2459174_2459351_+	30S ribosomal protein S21	NA	NA	NA	NA	NA
WP_003565671.1|2459379_2459814_+	GatB/YqeY domain-containing protein	NA	NA	NA	NA	NA
WP_003565669.1|2460147_2461134_+	PhoH family protein	NA	H6X2N1	Pseudomonas_phage	46.5	1.9e-49
>prophage 154
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2468876	2471946	3035735		Caulobacter_phage(50.0%)	2	NA	NA
WP_014566538.1|2468876_2470664_+	DNA primase	NA	A0A0K1LMQ9	Caulobacter_phage	34.6	1.2e-54
WP_003565648.1|2470677_2471946_+	RNA polymerase sigma factor RpoD	NA	F4YCU2	Synechococcus_phage	38.9	1.1e-38
>prophage 155
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2484848	2499750	3035735	tRNA	Bacillus_phage(50.0%)	10	NA	NA
WP_012491616.1|2484848_2488553_+	helicase-exonuclease AddAB subunit AddA	NA	S5MMD7	Bacillus_phage	22.7	2.1e-08
WP_012491615.1|2488591_2491378_+	ribonuclease H-like domain-containing protein	NA	A0A1X9I5C8	Streptococcus_phage	28.8	1.6e-42
WP_003565619.1|2491806_2492295_+	DUF5590 domain-containg protein	NA	NA	NA	NA	NA
WP_012491614.1|2492349_2493525_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA	NA
WP_003575160.1|2493555_2494854_+|tRNA	asparagine--tRNA ligase	tRNA	A0A2P1EMB4	Moumouvirus	27.9	1.7e-50
WP_003565613.1|2494908_2495532_+	DnaD domain protein	NA	A0A0N7AE27	Bacillus_phage	42.4	3.4e-12
WP_013245757.1|2495567_2496257_+	endonuclease III	NA	NA	NA	NA	NA
WP_003565609.1|2496253_2496715_+	hypothetical protein	NA	A7KUY9	Bacillus_phage	63.3	1.6e-40
WP_003598776.1|2496824_2499131_-	PBP1A family penicillin-binding protein	NA	NA	NA	NA	NA
WP_003565605.1|2499123_2499750_-	Holliday junction resolvase RecU	NA	A0A2H4J3A4	uncultured_Caudovirales_phage	37.2	2.7e-22
>prophage 156
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2505607	2512218	3035735		Enterococcus_phage(75.0%)	5	NA	NA
WP_003598772.1|2505607_2507512_+	peptidase M13	NA	A0A1V0SHG2	Klosneuvirus	32.0	2.7e-60
WP_003598770.1|2507739_2508624_+	LysR family transcriptional regulator	NA	NA	NA	NA	NA
WP_003565553.1|2508713_2509694_-	class 1b ribonucleoside-diphosphate reductase subunit beta	NA	A0A096XT60	Enterococcus_phage	66.3	4.0e-121
WP_003598767.1|2509746_2511918_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	NA	A8E2R1	Enterococcus_phage	60.3	9.5e-256
WP_003565549.1|2511987_2512218_-	glutaredoxin-like protein NrdH	NA	X2KRY7	Enterococcus_phage	36.0	2.8e-09
>prophage 157
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2517212	2517611	3035735		Vibrio_phage(100.0%)	1	NA	NA
WP_003575133.1|2517212_2517611_-	ribonuclease HI family protein	NA	H6WXD3	Vibrio_phage	41.0	4.3e-05
>prophage 158
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2522029	2526776	3035735		Enterobacteria_phage(33.33%)	4	NA	NA
WP_003565525.1|2522029_2523337_+	xanthine/uracil permease	NA	Q9KX94	Enterobacteria_phage	37.7	8.5e-66
WP_003565523.1|2523323_2524265_+	aspartate carbamoyltransferase catalytic subunit	NA	A0A1J0F9B8	Only_Syngen_Nebraska_virus	35.8	3.2e-30
WP_003598753.1|2524268_2525534_+	dihydroorotase	NA	NA	NA	NA	NA
WP_003570893.1|2525693_2526776_+	carbamoyl phosphate synthase small subunit	NA	R4TGJ8	Halovirus	35.2	5.9e-57
>prophage 159
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2542391	2547397	3035735		Paramecium_bursaria_Chlorella_virus(50.0%)	4	NA	NA
WP_012491606.1|2542391_2544095_-	fibronectin/fibrinogen-binding protein	NA	M1I5P2	Paramecium_bursaria_Chlorella_virus	35.3	2.3e-07
WP_012491605.1|2544248_2545115_+	DegV family protein	NA	NA	NA	NA	NA
WP_012491604.1|2545164_2545731_+	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_012491602.1|2546299_2547397_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	25.1	4.2e-18
>prophage 160
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2554447	2555539	3035735		Pacmanvirus(100.0%)	1	NA	NA
WP_003565460.1|2554447_2555539_+	histidinol-phosphate transaminase	NA	A0A1X6WGT4	Pacmanvirus	24.6	4.6e-17
>prophage 161
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2560799	2561570	3035735		Planktothrix_phage(100.0%)	1	NA	NA
WP_003584392.1|2560799_2561570_+	ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	34.5	7.8e-27
>prophage 162
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2569389	2587494	3035735	protease,tRNA	Bacillus_virus(28.57%)	12	NA	NA
WP_003565434.1|2569389_2571651_-	formate C-acetyltransferase	NA	A0A2P0VNR5	Tetraselmis_virus	40.7	2.2e-162
WP_003565432.1|2571902_2574347_-	DNA topoisomerase IV subunit A	NA	G3M9Z5	Bacillus_virus	31.7	2.9e-99
WP_012491594.1|2574353_2576366_-	DNA topoisomerase IV subunit B	NA	G3M9Z3	Bacillus_virus	41.0	2.2e-121
WP_003565428.1|2576889_2577513_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA	NA
WP_012491593.1|2577594_2578473_-	aldose 1-epimerase family protein	NA	NA	NA	NA	NA
WP_003579113.1|2578508_2579918_-|protease	ATP-dependent protease ATPase subunit HslU	protease	A0A1B2IBU3	Erwinia_phage	28.6	2.1e-38
WP_003565422.1|2579961_2580486_-|protease	ATP-dependent protease subunit HslV	protease	NA	NA	NA	NA
WP_003570336.1|2580733_2581630_-	tyrosine recombinase XerC	NA	A0A0K2CP59	Brevibacillus_phage	28.5	8.8e-30
WP_012491592.1|2581754_2583074_-|tRNA	methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO	tRNA	NA	NA	NA	NA
WP_012491591.1|2583504_2585589_-	type I DNA topoisomerase	NA	A0A1V0SCS0	Indivirus	37.7	3.3e-104
WP_012491589.1|2585858_2586674_-	DNA-protecting protein DprA	NA	NA	NA	NA	NA
WP_012491588.1|2586735_2587494_-	ribonuclease HII	NA	V5LS49	Emiliania_huxleyi_virus	37.1	1.3e-21
>prophage 163
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2598326	2606484	3035735	tRNA	Ralstonia_phage(16.67%)	8	NA	NA
WP_003579093.1|2598326_2598818_-	dihydrofolate reductase	NA	A0A1L7N103	Ralstonia_phage	35.9	5.3e-21
WP_012491579.1|2598945_2599896_-	thymidylate synthase	NA	A0A0N9SH48	Staphylococcus_phage	65.6	2.6e-125
WP_012491578.1|2599924_2601817_-	ABC-F family ATP-binding cassette domain-containing protein	NA	A0A2K9L3Z8	Tupanvirus	28.1	1.5e-50
WP_003565371.1|2601912_2602368_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003570288.1|2602505_2603702_-|tRNA	CCA tRNA nucleotidyltransferase	tRNA	H7BUW3	unidentified_phage	32.3	1.1e-43
WP_003570286.1|2603805_2604684_+	YitT family protein	NA	M1Q1P6	Streptococcus_phage	38.8	3.8e-54
WP_003565365.1|2604694_2605963_-	tetratricopeptide repeat protein	NA	NA	NA	NA	NA
WP_003658248.1|2606208_2606484_-	HU family DNA-binding protein	NA	A0A0H3UZA0	Geobacillus_virus	68.5	2.3e-26
>prophage 164
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2610941	2612351	3035735		Diadromus_pulchellus_ascovirus(100.0%)	1	NA	NA
WP_012491576.1|2610941_2612351_-	ATP-dependent DNA helicase RecQ	NA	F2NZ48	Diadromus_pulchellus_ascovirus	38.3	2.5e-55
>prophage 165
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2615395	2618237	3035735		uncultured_Mediterranean_phage(66.67%)	4	NA	NA
WP_003565342.1|2615395_2616016_-	SMC-Scp complex subunit ScpB	NA	A0A1B1IVT7	uncultured_Mediterranean_phage	54.4	4.2e-15
WP_014566524.1|2616015_2616741_-	segregation/condensation protein A	NA	A0A1B1IVW1	uncultured_Mediterranean_phage	32.7	5.8e-08
WP_003565339.1|2616715_2617102_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003565337.1|2617355_2618237_-	site-specific tyrosine recombinase XerD	NA	A0A0K2CP59	Brevibacillus_phage	29.9	2.4e-32
>prophage 166
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2622724	2626021	3035735		Streptomyces_phage(100.0%)	1	NA	NA
WP_012491570.1|2622724_2626021_-	DNA polymerase III subunit alpha	NA	A0A291AVG1	Streptomyces_phage	33.5	9.7e-151
>prophage 167
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2630200	2637527	3035735		Pectobacterium_phage(33.33%)	5	NA	NA
WP_012491567.1|2630200_2632807_-	ATP-dependent chaperone ClpB	NA	A0A1L2CUT6	Pectobacterium_phage	37.6	4.0e-123
WP_003565311.1|2633163_2633499_-	LapA family protein	NA	NA	NA	NA	NA
WP_003565308.1|2633512_2634298_-	SDR family oxidoreductase	NA	Q06VL0	Trichoplusia_ni_ascovirus	28.9	5.3e-07
WP_003574983.1|2634341_2635304_-	ribonuclease Z	NA	NA	NA	NA	NA
WP_003570229.1|2635532_2637527_-	acetyltransferase	NA	W6MVL2	Pseudomonas_phage	29.6	2.1e-23
>prophage 168
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2645091	2655106	3035735	protease	Planktothrix_phage(20.0%)	9	NA	NA
WP_012491561.1|2645091_2645838_-	amino acid ABC transporter ATP-binding protein	NA	G9BWD6	Planktothrix_phage	36.8	2.8e-29
WP_003565289.1|2645827_2647285_-	ABC transporter substrate-binding protein/permease	NA	NA	NA	NA	NA
WP_003565287.1|2647439_2647601_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003565285.1|2647644_2647935_-	nucleoside triphosphate pyrophosphohydrolase family protein	NA	A0A1S7FYY8	Listeria_phage	46.2	3.2e-18
WP_003565283.1|2647938_2648535_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA	NA
WP_003565281.1|2648752_2650003_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	protease	G3M9Z9	Bacillus_virus	57.7	2.3e-137
WP_003579034.1|2650197_2651535_-	trigger factor	NA	NA	NA	NA	NA
WP_012491560.1|2651725_2653462_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	32.5	2.6e-62
WP_003565275.1|2653915_2655106_-	elongation factor Tu	NA	A0A1V0SGC3	Hokovirus	28.9	1.4e-30
>prophage 169
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2660951	2665509	3035735		Clostridium_botulinum_C_phage(50.0%)	4	NA	NA
WP_012491558.1|2660951_2663156_-	ComEC/Rec2 family competence protein	NA	Q332C0	Clostridium_botulinum_C_phage	33.5	7.7e-27
WP_012491557.1|2663152_2663833_-	helix-hairpin-helix domain-containing protein	NA	NA	NA	NA	NA
WP_012491556.1|2663945_2665028_-	PDZ domain-containing protein	NA	NA	NA	NA	NA
WP_003605072.1|2665005_2665509_-	pantetheine-phosphate adenylyltransferase	NA	A0A1B1IVQ3	uncultured_Mediterranean_phage	34.4	4.9e-22
>prophage 170
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2675561	2676965	3035735		Erysipelothrix_phage(100.0%)	1	NA	NA
WP_012491553.1|2675561_2676965_-	dihydrolipoyl dehydrogenase	NA	A0A2K5B2C5	Erysipelothrix_phage	29.0	8.9e-45
>prophage 171
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2682588	2683143	3035735		Synechococcus_phage(100.0%)	1	NA	NA
WP_003565220.1|2682588_2683143_+	peptide deformylase	NA	E3SLL2	Synechococcus_phage	41.1	1.6e-13
>prophage 172
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2689037	2691506	3035735		Bacillus_phage(100.0%)	1	NA	NA
WP_012491548.1|2689037_2691506_-	ATP-dependent RecD-like DNA helicase	NA	A0A218KCE8	Bacillus_phage	27.5	7.7e-52
>prophage 173
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2695032	2756983	3035735	lysis,transposase,tRNA	Leptospira_phage(22.22%)	60	NA	NA
WP_012491545.1|2695032_2697315_-	excinuclease ABC subunit UvrA	NA	A0A1B1IVR3	uncultured_Mediterranean_phage	30.8	7.7e-123
WP_003570154.1|2697532_2697874_-	DUF1831 domain-containing protein	NA	NA	NA	NA	NA
WP_012491544.1|2698084_2699248_-	cysteine desulfurase	NA	A0A1X7QGF3	Faustovirus	30.4	7.9e-31
WP_003570151.1|2699263_2699974_-	5'-methylthioadenosine/adenosylhomocysteine nucleosidase	NA	NA	NA	NA	NA
WP_003565192.1|2700076_2700337_-	membrane protein	NA	NA	NA	NA	NA
WP_003594381.1|2700448_2700985_-	NUDIX hydrolase	NA	NA	NA	NA	NA
WP_003578969.1|2701286_2701949_+|lysis	5-bromo-4-chloroindolyl phosphate hydrolysis family protein	lysis	NA	NA	NA	NA
WP_003565187.1|2701945_2703157_+	toxic anion resistance protein	NA	A0A291I9K4	Lactobacillus_phage	26.3	1.5e-32
WP_003658327.1|2703253_2704690_-	MFS transporter	NA	NA	NA	NA	NA
WP_003565182.1|2704865_2705771_+	phosphate ABC transporter substrate-binding protein PstS family protein	NA	NA	NA	NA	NA
WP_003570139.1|2705907_2706129_-	cold shock domain-containing protein	NA	NA	NA	NA	NA
WP_012491543.1|2706141_2708928_-|tRNA	isoleucine--tRNA ligase	tRNA	A0A1V0SJ93	Klosneuvirus	27.0	5.4e-86
WP_012491542.1|2709174_2709957_-	DivIVA domain-containing protein	NA	NA	NA	NA	NA
WP_012491541.1|2710014_2710794_-	RNA-binding protein	NA	NA	NA	NA	NA
WP_003565173.1|2710800_2711094_-	YggT family protein	NA	NA	NA	NA	NA
WP_003565171.1|2711105_2711561_-	cell division protein SepF	NA	NA	NA	NA	NA
WP_003574874.1|2711578_2712838_-	cell division protein FtsZ	NA	NA	NA	NA	NA
WP_003565166.1|2712862_2714209_-	cell division protein FtsA	NA	NA	NA	NA	NA
WP_003565163.1|2714318_2715173_-	FtsQ-type POTRA domain-containing protein	NA	NA	NA	NA	NA
WP_003570121.1|2715178_2716270_-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	NA	NA	NA	NA	NA
WP_012491540.1|2716269_2717649_-	UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase	NA	NA	NA	NA	NA
WP_003565157.1|2717679_2718645_-	phospho-N-acetylmuramoyl-pentapeptide- transferase	NA	NA	NA	NA	NA
WP_014566515.1|2718659_2720807_-	penicillin-binding protein	NA	NA	NA	NA	NA
WP_003565154.1|2720803_2721169_-	cell division protein FtsL	NA	NA	NA	NA	NA
WP_003565152.1|2721181_2722123_-	16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH	NA	NA	NA	NA	NA
WP_003565149.1|2722125_2722557_-	division/cell wall cluster transcriptional repressor MraZ	NA	NA	NA	NA	NA
WP_003565147.1|2722732_2723065_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003565145.1|2723415_2723535_+	DUF4044 domain-containing protein	NA	NA	NA	NA	NA
WP_012491536.1|2723619_2725053_-	cardiolipin synthase	NA	NA	NA	NA	NA
WP_003565141.1|2725285_2726098_-	amino acid ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_003565139.1|2726094_2726733_-	amino acid ABC transporter ATP-binding protein	NA	G3M9Y6	Bacillus_virus	39.5	2.6e-28
WP_003565136.1|2726745_2727402_-	amino acid ABC transporter permease	NA	NA	NA	NA	NA
WP_003565134.1|2728067_2728865_-	septum site-determining protein MinD	NA	NA	NA	NA	NA
WP_012491535.1|2728865_2729522_-	cell division inhibitor	NA	NA	NA	NA	NA
WP_003574845.1|2729535_2730066_-	rod shape-determining protein MreD	NA	NA	NA	NA	NA
WP_012491534.1|2730067_2730928_-	rod shape-determining protein MreC	NA	NA	NA	NA	NA
WP_003565127.1|2731016_2732018_-	rod shape-determining protein	NA	NA	NA	NA	NA
WP_003565124.1|2732157_2732826_-	DNA repair protein RadC	NA	NA	NA	NA	NA
WP_003565122.1|2732887_2733532_-	HAD family phosphatase	NA	NA	NA	NA	NA
WP_012491533.1|2733723_2735001_-	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA	NA
WP_014566514.1|2735293_2737936_-|tRNA	valine--tRNA ligase	tRNA	A0A1V0S951	Catovirus	41.4	2.7e-151
WP_003570094.1|2738309_2738963_-	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA	NA
WP_012491532.1|2739268_2740486_-|tRNA	tRNA 4-thiouridine(8) synthase ThiI	tRNA	NA	NA	NA	NA
WP_003574834.1|2740502_2741660_-	cysteine desulfurase	NA	NA	NA	NA	NA
WP_003565110.1|2741968_2743672_-	septation ring formation regulator EzrA	NA	NA	NA	NA	NA
WP_012491531.1|2743848_2744331_+	GAF domain-containing protein	NA	NA	NA	NA	NA
WP_003565106.1|2744506_2745118_+	30S ribosomal protein S4	NA	NA	NA	NA	NA
WP_014951865.1|2745424_2745631_-|transposase	transposase domain-containing protein	transposase	S5VTD3	Leptospira_phage	40.7	2.9e-05
WP_016364311.1|2745627_2746092_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_157847124.1|2745982_2746372_-|transposase	transposase	transposase	S5VLC8	Leptospira_phage	37.1	5.1e-11
WP_012491526.1|2746296_2746905_-|transposase	transposase	transposase	NA	NA	NA	NA
WP_012491525.1|2747019_2747199_-	IS66 family insertion sequence element accessory protein TnpB	NA	NA	NA	NA	NA
WP_012491524.1|2747200_2747389_-	hypothetical protein	NA	NA	NA	NA	NA
WP_012491523.1|2747994_2749749_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491522.1|2749930_2750251_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491521.1|2750319_2751252_+	SIR2 family protein	NA	NA	NA	NA	NA
WP_012491520.1|2751256_2752336_+	DUF87 domain-containing protein	NA	NA	NA	NA	NA
WP_012491519.1|2752431_2753013_+	ATP-binding protein	NA	NA	NA	NA	NA
WP_012491515.1|2754904_2755615_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003599410.1|2756053_2756983_+|transposase	IS30-like element ISLpl1 family transposase	transposase	H7BW61	unidentified_phage	29.9	6.5e-20
>prophage 174
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2765425	2766313	3035735		Anomala_cuprea_entomopoxvirus(100.0%)	1	NA	NA
WP_024109452.1|2765425_2766313_+	ABC transporter ATP-binding protein	NA	W6JKT0	Anomala_cuprea_entomopoxvirus	26.6	1.3e-17
>prophage 175
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2777044	2778926	3035735		Staphylococcus_phage(50.0%)	2	NA	NA
WP_003565060.1|2777044_2777974_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	42.2	5.7e-40
WP_012491499.1|2778248_2778926_+	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	36.2	8.1e-28
>prophage 176
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2783014	2784550	3035735		Lactobacillus_phage(100.0%)	2	NA	NA
WP_003565046.1|2783014_2783743_-	deoxynucleoside kinase	NA	A0A2K9VCW4	Lactobacillus_phage	43.5	4.9e-47
WP_003565044.1|2783818_2784550_-	nicotinamide mononucleotide transporter	NA	A0A0A7NTY4	Lactobacillus_phage	71.0	1.6e-98
>prophage 177
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2792794	2794090	3035735		Bacillus_phage(100.0%)	1	NA	NA
WP_003569990.1|2792794_2794090_+	replication-associated recombination protein A	NA	A0A127AWE7	Bacillus_phage	49.9	3.0e-103
>prophage 178
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2800932	2806224	3035735		Mycobacterium_phage(25.0%)	6	NA	NA
WP_012491488.1|2800932_2801379_-	SUF system NifU family Fe-S cluster assembly protein	NA	V5R992	Mycobacterium_phage	38.5	6.7e-15
WP_014566510.1|2801365_2802562_-	cysteine desulfurase	NA	Q2XUY6	environmental_halophage	43.1	3.7e-84
WP_003565004.1|2802554_2803586_-	SufD family Fe-S cluster assembly protein	NA	NA	NA	NA	NA
WP_003565002.1|2803578_2804346_-	Fe-S cluster assembly ATPase SufC	NA	A0A1M7XV31	Cedratvirus	23.9	1.5e-06
WP_012491486.1|2804477_2805167_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_003564998.1|2805171_2806224_-	ATP-binding cassette domain-containing protein	NA	G9BWD6	Planktothrix_phage	37.3	1.2e-33
>prophage 179
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2812658	2812964	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_003564982.1|2812658_2812964_-	membrane protein insertion efficiency factor YidD	NA	A0A2H4PQM5	Staphylococcus_phage	59.4	6.9e-19
>prophage 180
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2822558	2827750	3035735		Aeromonas_phage(25.0%)	5	NA	NA
WP_011674408.1|2822558_2823791_-	serine hydroxymethyltransferase	NA	A0A240F2Y9	Aeromonas_phage	52.3	3.6e-98
WP_003564954.1|2824060_2825062_-	threonylcarbamoyl-AMP synthase	NA	S4VW33	Pandoravirus	42.3	1.8e-52
WP_003569956.1|2825159_2825990_-	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA	NA
WP_003564946.1|2825982_2827062_-	peptide chain release factor 1	NA	A0A0S4KWG0	Pseudomonas_phage	40.3	9.0e-05
WP_003564944.1|2827159_2827750_-	thymidine kinase	NA	A0A249XZX5	Enterococcus_phage	49.5	1.8e-44
>prophage 181
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2832935	2836552	3035735		Bacillus_phage(100.0%)	2	NA	NA
WP_003564926.1|2832935_2834822_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	33.0	1.4e-61
WP_003569941.1|2834821_2836552_-	ABC transporter ATP-binding protein	NA	W8CYL7	Bacillus_phage	27.0	9.9e-46
>prophage 182
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2841465	2842659	3035735		Staphylococcus_phage(100.0%)	1	NA	NA
WP_012491479.1|2841465_2842659_+	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	34.9	5.2e-54
>prophage 183
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2847938	2848937	3035735	transposase	Staphylococcus_phage(100.0%)	1	NA	NA
WP_003601683.1|2847938_2848937_-|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
>prophage 184
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2856704	2870364	3035735		Streptococcus_phage(16.67%)	14	NA	NA
WP_012491422.1|2856704_2858960_+	LTA synthase family protein	NA	W6LM83	Streptococcus_phage	44.6	4.7e-157
WP_003566502.1|2859045_2859792_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491421.1|2859801_2860371_+	branched-chain amino acid ABC transporter ATP-binding protein	NA	NA	NA	NA	NA
WP_012491420.1|2860492_2861788_-	adenylosuccinate lyase	NA	A0A2H4UUU6	Bodo_saltans_virus	28.5	4.4e-14
WP_003598329.1|2861857_2862967_-	ATP-grasp domain-containing protein	NA	NA	NA	NA	NA
WP_003566511.1|2862987_2864316_-	purine permease	NA	Q9KX94	Enterobacteria_phage	31.7	1.6e-35
WP_003566514.1|2864322_2864901_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA	NA
WP_003661214.1|2865091_2865733_-	glycoside hydrolase family 73 protein	NA	A0A0A7RUS8	Clostridium_phage	47.7	8.5e-27
WP_012491419.1|2865732_2866215_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003566521.1|2866456_2866657_-	cold-shock protein	NA	Q9AZD3	Lactococcus_phage	66.2	1.2e-19
WP_080513729.1|2867340_2867469_-	transcription elongation factor GreAB	NA	NA	NA	NA	NA
WP_012491418.1|2867616_2868582_-	membrane protein	NA	NA	NA	NA	NA
WP_014566504.1|2868709_2869348_+	YkyA family protein	NA	NA	NA	NA	NA
WP_012491416.1|2869434_2870364_+	glycosyltransferase family 2 protein	NA	V5USA4	Oenococcus_phage	47.7	3.9e-73
>prophage 185
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2883453	2889696	3035735	transposase	Staphylococcus_phage(25.0%)	5	NA	NA
WP_003601683.1|2883453_2884452_+|transposase	IS30 family transposase	transposase	W5R8L2	Staphylococcus_phage	39.8	1.8e-55
WP_012491407.1|2884504_2885380_+	NAD-dependent epimerase/dehydratase family protein	NA	NA	NA	NA	NA
WP_003582147.1|2887081_2887810_+	helix-turn-helix domain-containing protein	NA	A0A0C5AJ29	Paenibacillus_phage	40.1	7.6e-32
WP_014951815.1|2887743_2888685_+|transposase	IS3 family transposase	transposase	Q6J1X2	Lactobacillus_phage	28.2	3.1e-17
WP_003564538.1|2888781_2889696_-	UTP--glucose-1-phosphate uridylyltransferase GalU	NA	A0A127AW70	Bacillus_phage	49.0	2.9e-73
>prophage 186
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2900325	2905360	3035735		Tupanvirus(50.0%)	5	NA	NA
WP_003574455.1|2900325_2902104_-	DNA helicase RecQ	NA	A0A2K9L3P7	Tupanvirus	35.4	4.0e-74
WP_012491402.1|2902189_2902912_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003564512.1|2903209_2903632_-	DUF3284 domain-containing protein	NA	NA	NA	NA	NA
WP_003578579.1|2903705_2904074_-	PTS lactose/cellobiose transporter subunit IIA	NA	NA	NA	NA	NA
WP_012491401.1|2904073_2905360_-	DEAD/DEAH box helicase	NA	E3T5E1	Cafeteria_roenbergensis_virus	26.6	1.6e-32
>prophage 187
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2913690	2921789	3035735		Cafeteria_roenbergensis_virus(25.0%)	6	NA	NA
WP_012491397.1|2913690_2915595_-	M13 family metallopeptidase	NA	E3T4I7	Cafeteria_roenbergensis_virus	27.0	1.6e-57
WP_003578566.1|2915753_2916629_+	PPK2 family polyphosphate--nucleotide phosphotransferase	NA	NA	NA	NA	NA
WP_014566496.1|2916708_2917545_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_016370647.1|2917573_2918785_-	MFS transporter	NA	A0A2H4PQR6	Staphylococcus_phage	34.1	2.0e-53
WP_012491395.1|2919388_2920762_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	NA	A0A1X9I6F4	Streptococcus_phage	51.3	6.3e-128
WP_003564476.1|2920754_2921789_-	diacylglycerol kinase	NA	A0A1V0SBJ0	Catovirus	28.1	2.2e-16
>prophage 188
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2926461	2940435	3035735		Bacillus_phage(33.33%)	15	NA	NA
WP_012491394.1|2926461_2928486_-	NAD-dependent DNA ligase LigA	NA	A0A0K2QQN8	Ralstonia_phage	36.9	3.5e-103
WP_012491393.1|2928542_2930798_-	DNA helicase PcrA	NA	A7KV33	Bacillus_phage	41.3	6.0e-136
WP_003564461.1|2931263_2931584_+	DUF898 family protein	NA	S5MNN8	Brevibacillus_phage	71.4	2.4e-14
WP_012491392.1|2931612_2932404_+	SGNH/GDSL hydrolase family protein	NA	NA	NA	NA	NA
WP_012491391.1|2932407_2933604_+	zinc-ribbon domain-containing protein	NA	NA	NA	NA	NA
WP_003564455.1|2933739_2933916_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491390.1|2934050_2935358_+	Y-family DNA polymerase	NA	Q6DMX4	Streptococcus_phage	38.3	3.4e-83
WP_003574405.1|2935350_2935671_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003564448.1|2935751_2936255_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003578545.1|2936279_2936714_-	ACT domain-containing protein	NA	NA	NA	NA	NA
WP_012491388.1|2937161_2937371_+	hypothetical protein	NA	NA	NA	NA	NA
WP_012491387.1|2937432_2937774_-	N-acetyltransferase	NA	NA	NA	NA	NA
WP_012491386.1|2937789_2937966_-	acetyltransferase	NA	NA	NA	NA	NA
WP_003564439.1|2938234_2939710_-	sensor histidine kinase	NA	A0A1X9VNV7	Mimivirus	24.5	4.2e-05
WP_003564436.1|2939706_2940435_-	response regulator transcription factor	NA	W8CYM9	Bacillus_phage	35.7	5.1e-36
>prophage 189
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2958698	2960510	3035735		Paramecium_bursaria_Chlorella_virus(100.0%)	1	NA	NA
WP_003569704.1|2958698_2960510_-	glutamine--fructose-6-phosphate transaminase (isomerizing)	NA	M1GV45	Paramecium_bursaria_Chlorella_virus	37.5	4.4e-89
>prophage 190
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2964413	2974763	3035735		Mycoplasma_phage(50.0%)	10	NA	NA
WP_003574320.1|2964413_2965148_+	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	35.8	2.5e-27
WP_012491373.1|2965137_2966277_+	ABC transporter permease	NA	NA	NA	NA	NA
WP_003574317.1|2966314_2966959_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA	NA
WP_012491372.1|2967062_2969855_+	cation-transporting P-type ATPase	NA	A0A1J0FA34	Only_Syngen_Nebraska_virus	29.1	7.3e-75
WP_012491371.1|2970064_2970259_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003564368.1|2970328_2970523_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003569694.1|2970864_2971938_-	ABC transporter substrate-binding protein	NA	NA	NA	NA	NA
WP_012491370.1|2971921_2972761_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012491369.1|2972750_2973575_-	ABC transporter permease	NA	Q6GZ02	Mycoplasma_phage	25.5	1.4e-10
WP_003564358.1|2973674_2974763_-	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	42.6	9.9e-36
>prophage 191
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2978803	2989135	3035735	tRNA	Cafeteria_roenbergensis_virus(20.0%)	11	NA	NA
WP_003569685.1|2978803_2979562_+	exodeoxyribonuclease III	NA	E3T4M6	Cafeteria_roenbergensis_virus	47.7	6.9e-60
WP_012491367.1|2979573_2980116_+	exonuclease	NA	A0A1S5SFA9	Streptococcus_phage	41.0	4.8e-23
WP_014566488.1|2980241_2981501_-	ABC transporter permease	NA	NA	NA	NA	NA
WP_012491365.1|2981493_2982390_-	ABC transporter ATP-binding protein	NA	A0A2H4PQG7	Staphylococcus_phage	30.1	6.1e-23
WP_012491364.1|2982836_2983298_-|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE	tRNA	NA	NA	NA	NA
WP_012491363.1|2983294_2984272_-	phosphate acetyltransferase	NA	NA	NA	NA	NA
WP_003564334.1|2984393_2985080_-	uracil-DNA glycosylase	NA	A0A0S1TKU8	Elephant_endotheliotropic_herpesvirus	41.7	2.1e-39
WP_003569675.1|2985199_2986093_+	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA	NA
WP_003569673.1|2986305_2986812_+	hypothetical protein	NA	NA	NA	NA	NA
WP_003569672.1|2987122_2987704_-	GNAT family N-acetyltransferase	NA	NA	NA	NA	NA
WP_003593952.1|2988073_2989135_+	ABC transporter ATP-binding protein	NA	Q6GZ03	Mycoplasma_phage	48.9	3.1e-18
>prophage 192
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	2999793	3000924	3035735		Planktothrix_phage(100.0%)	1	NA	NA
WP_014566762.1|2999793_3000924_-	sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC	NA	G9BWD6	Planktothrix_phage	32.4	1.4e-21
>prophage 193
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	3008977	3011852	3035735		Staphylococcus_phage(50.0%)	2	NA	NA
WP_003564285.1|3008977_3009451_-	SsrA-binding protein SmpB	NA	W5RAM5	Staphylococcus_phage	60.5	1.2e-46
WP_014566483.1|3009482_3011852_-	ribonuclease R	NA	Q0GXV6	Lactococcus_phage	38.4	6.6e-93
>prophage 194
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	3015274	3018171	3035735		Streptococcus_phage(100.0%)	2	NA	NA
WP_014566482.1|3015274_3016555_-	MFS transporter	NA	A0A1B0RXG2	Streptococcus_phage	34.9	3.6e-61
WP_012491343.1|3016866_3018171_-	phosphopyruvate hydratase	NA	A0A1X9I5Z8	Streptococcus_phage	67.1	5.7e-163
>prophage 195
NZ_CP041657	Lactobacillus paracasei strain CBA3611 chromosome, complete genome	3035735	3023303	3035062	3035735	tail,holin	Lactobacillus_phage(100.0%)	11	NA	NA
WP_012491342.1|3023303_3024356_-	N-acetylmuramoyl-L-alanine amidase	NA	A0A1B0Y4R9	Lactobacillus_phage	100.0	2.3e-207
WP_012491341.1|3024357_3024819_-|holin	phage holin	holin	A0A1B0Y6C9	Lactobacillus_phage	100.0	1.2e-70
WP_004562059.1|3024815_3025022_-	hypothetical protein	NA	A0A1B0YE97	Lactobacillus_phage	100.0	1.4e-12
WP_012491339.1|3025002_3025389_-	hypothetical protein	NA	A0A1B0YC31	Lactobacillus_phage	100.0	5.6e-66
WP_012491338.1|3025436_3025706_-	hypothetical protein	NA	A0A1B0Y3N0	Lactobacillus_phage	100.0	1.3e-40
WP_012491263.1|3025708_3026134_-	DUF1617 family protein	NA	A0A1B0Y2S1	Lactobacillus_phage	100.0	8.8e-73
WP_012491337.1|3026162_3030566_-|tail	phage tail protein	tail	A0A1B0Y2S0	Lactobacillus_phage	100.0	0.0e+00
WP_012491336.1|3030562_3031258_-	hypothetical protein	NA	A0A1B0Y2S2	Lactobacillus_phage	100.0	8.3e-129
WP_014566481.1|3031264_3034435_-|tail	phage tail tape measure protein	tail	A0A1B0YA78	Lactobacillus_phage	99.9	0.0e+00
WP_012491334.1|3034454_3034616_-	hypothetical protein	NA	A0A1B0Y4R4	Lactobacillus_phage	100.0	5.7e-25
WP_003595114.1|3034696_3035062_-	hypothetical protein	NA	A0A1B0Y865	Lactobacillus_phage	100.0	4.6e-62
>prophage 1
NZ_CP041658	Lactobacillus paracasei strain CBA3611 plasmid pLP1, complete sequence	66795	1797	48898	66795	transposase,holin	Staphylococcus_phage(30.0%)	47	NA	NA
WP_014566870.1|1797_2049_-|transposase	IS3 family transposase	transposase	Q6J1X3	Lactobacillus_phage	92.8	1.5e-35
WP_172620222.1|2373_10239_-	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA	NA
WP_123796560.1|10716_11878_+|transposase	IS3-like element ISL1 family transposase	transposase	A0A0P0I4A4	Acinetobacter_phage	33.2	5.1e-30
WP_003572740.1|12114_12432_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015338164.1|12625_13009_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566865.1|13005_14298_+	Y-family DNA polymerase	NA	O64031	Bacillus_phage	39.9	1.3e-79
WP_014566897.1|14290_14632_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566863.1|14676_15066_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566862.1|15058_15895_-	ParA family protein	NA	F0PIG8	Enterococcus_phage	36.7	1.1e-37
WP_014566861.1|16285_17341_+	replication initiator protein A	NA	NA	NA	NA	NA
WP_014566860.1|17330_18068_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566859.1|18561_18789_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566858.1|19315_19552_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566857.1|19559_19778_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566856.1|19770_20001_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566855.1|19987_20263_+	hypothetical protein	NA	NA	NA	NA	NA
WP_014566854.1|20481_20730_+	hypothetical protein	NA	NA	NA	NA	NA
WP_002816607.1|20770_21454_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.8	2.1e-60
WP_003568776.1|21813_21933_-|holin	putative holin-like toxin	holin	NA	NA	NA	NA
WP_014566874.1|22300_23692_-	DUF3991 domain-containing protein	NA	NA	NA	NA	NA
WP_015338147.1|23736_25944_-	relaxase/mobilization nuclease domain-containing protein	NA	NA	NA	NA	NA
WP_003592546.1|25915_26122_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA	NA
WP_003600314.1|26558_26834_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566876.1|26921_27896_-	DNA primase	NA	NA	NA	NA	NA
WP_015338150.1|27913_29059_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566878.1|29094_29325_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566879.1|29342_29867_-	hypothetical protein	NA	NA	NA	NA	NA
WP_015338151.1|29880_32358_-	CHAP domain-containing protein	NA	A0A1X9SGZ2	Bradyrhizobium_phage	36.8	9.3e-13
WP_014566881.1|32347_34804_-	ATP-binding protein	NA	NA	NA	NA	NA
WP_016363322.1|34751_35123_-	PrgI family protein	NA	NA	NA	NA	NA
WP_014566882.1|35140_35974_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003571730.1|35993_36200_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566883.1|36217_38113_-	type IV secretory system conjugative DNA transfer family protein	NA	NA	NA	NA	NA
WP_014566884.1|38112_38589_-	PcfB family protein	NA	NA	NA	NA	NA
WP_014566885.1|38607_40131_-	DUF5011 domain-containing protein	NA	NA	NA	NA	NA
WP_014566886.1|40154_40421_-	hypothetical protein	NA	NA	NA	NA	NA
WP_003586951.1|40432_40711_-	hypothetical protein	NA	NA	NA	NA	NA
WP_014566889.1|41090_41279_-	hypothetical protein	NA	NA	NA	NA	NA
WP_002816607.1|41367_42051_+|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.8	2.1e-60
WP_014566890.1|42125_42866_+	nickel pincer cofactor biosynthesis protein LarB	NA	A0A288TYA6	Enterococcus_phage	47.2	4.7e-21
WP_029327658.1|42896_44159_+	nickel pincer cofactor biosynthesis protein LarC	NA	NA	NA	NA	NA
WP_003643656.1|44163_44880_+	aquaporin family protein	NA	M1H4F4	Acanthocystis_turfacea_Chlorella_virus	33.6	4.1e-22
WP_014566892.1|44904_45735_+	ATP-dependent sacrificial sulfur transferase LarE	NA	NA	NA	NA	NA
WP_002816607.1|46071_46755_-|transposase	IS6 family transposase	transposase	A0A0N9RU54	Staphylococcus_phage	51.8	2.1e-60
WP_003582052.1|46844_47738_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA	NA
WP_014566853.1|47743_48103_+	hypothetical protein	NA	NA	NA	NA	NA
WP_123827224.1|48110_48898_-|transposase	IS5 family transposase	transposase	NA	NA	NA	NA
