assembly_id	genome_id	genome_def	crispr_array_locus_merge	crispr_array_location_merge	crispr_locus_id	crispr_pred_method	array_in_prot	prot_within_array_20000	prot_in_genome	crispr_type_by_cas_prot	consensus_repeat	repeat_length	self-targeting_spacer_number	self-targeting_target_number	spacer_location	protospacer_location	repeat_type	spacer_locus_num	spacer_num	correct_crispr_type	genome_cas_prots	unknown_protein_around_crispr	L10	L10_domain	L9	L9_domain	L8	L8_domain	L7	L7_domain	L6	L6_domain	L5	L5_domain	L4	L4_domain	L3	L3_domain	L2	L2_domain	L1	L1_domain	R1	R1_domain	R2	R2_domain	R3	R3_domain	R4	R4_domain	R5	R5_domain	R6	R6_domain	R7	R7_domain	R8	R8_domain	R9	R9_domain	R10	R10_domain
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	1	321750-321964	1	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Orphan	TACGGTCAGCAGCCGGGCCAGCCGGGCGGCTACGGCCAGCAGCC	44	0	0	NA	NA	NA	2	2	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA|63aa|up_6|NZ_CP041695.1_314435_314624_+,NA|103aa|up_5|NZ_CP041695.1_314628_314937_+,NA|103aa|up_4|NZ_CP041695.1_315101_315410_-,NA|153aa|down_3|NZ_CP041695.1_327265_327724_-	NA|466aa|up_9|NZ_CP041695.1_309541_310939_-	pfam13556, HTH_30, PucR C-terminal helix-turn-helix domain	NA|299aa|up_8|NZ_CP041695.1_310959_311856_+	COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]	NA|808aa|up_7|NZ_CP041695.1_311943_314367_+	TIGR01073, ATP-dependent_DNA_helicase_PcrA, ATP-dependent DNA helicase PcrA	NA|63aa|up_6|NZ_CP041695.1_314435_314624_+	NA	NA|103aa|up_5|NZ_CP041695.1_314628_314937_+	NA	NA|103aa|up_4|NZ_CP041695.1_315101_315410_-	NA	NA|329aa|up_3|NZ_CP041695.1_315610_316597_+	cd19080, AKR_AKR9A_9B, AKR9A and AKR9B families of aldo-keto reductase (AKR)	NA|491aa|up_2|NZ_CP041695.1_316708_318181_-	pfam01551, Peptidase_M23, Peptidase family M23	NA|389aa|up_1|NZ_CP041695.1_318733_319900_+	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta	NA|305aa|up_0|NZ_CP041695.1_319915_320830_+	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated	NA|530aa|down_0|NZ_CP041695.1_323231_324821_+	NF012181, MSCRAMM_SdrD, MSCRAMM family adhesin SdrD	NA|211aa|down_1|NZ_CP041695.1_324909_325542_+	PRK05647, purN, phosphoribosylglycinamide formyltransferase; Reviewed	NA|534aa|down_2|NZ_CP041695.1_325553_327155_+	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional	NA|153aa|down_3|NZ_CP041695.1_327265_327724_-	NA	NA|208aa|down_4|NZ_CP041695.1_327867_328491_+	smart00108, B_lectin, Bulb-type mannose-specific lectin	NA|164aa|down_5|NZ_CP041695.1_328583_329075_+	cd07821, PYR_PYL_RCAR_like, Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins	NA|85aa|down_6|NZ_CP041695.1_329260_329515_-	PRK13401, PRK13401, 30S ribosomal protein S18; Provisional	NA|102aa|down_7|NZ_CP041695.1_329548_329854_-	PRK08881, rpsN, 30S ribosomal protein S14; Reviewed	NA|57aa|down_8|NZ_CP041695.1_329855_330026_-	PRK00595, rpmG, 50S ribosomal protein L33; Validated	NA|79aa|down_9|NZ_CP041695.1_330037_330274_-	PRK00359, rpmB, 50S ribosomal protein L28; Reviewed
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	2	839956-840064	2	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Orphan	CGAATGTGCCGGGCACTCAGCCGGA	25	1	3	840023-840039|840023-840039|840023-840039	NZ_CP041695.1_5228046-5228030|NZ_CP041695.1_2312296-2312312|NZ_CP041695.1_3172281-3172297	NA	2	2	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA,NA|219aa|down_8|NZ_CP041695.1_850941_851598_-	NA|147aa|up_9|NZ_CP041695.1_825367_825808_+	PRK12419, PRK12419, 6,7-dimethyl-8-ribityllumazine synthase	NA|459aa|up_8|NZ_CP041695.1_825949_827326_-	PRK01663, PRK01663, C4-dicarboxylate transporter DctA; Reviewed	NA|498aa|up_7|NZ_CP041695.1_827509_829003_+	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]	NA|231aa|up_6|NZ_CP041695.1_829189_829882_+	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]	NA|386aa|up_5|NZ_CP041695.1_830225_831383_+	cd03512, Alkane-hydroxylase, Alkane hydroxylase is a bacterial, integral-membrane di-iron enzyme that shares a requirement for iron and oxygen for activity similar to that of the non-heme integral-membrane acyl coenzyme A (CoA) desaturases and acyl lipid desaturases	NA|697aa|up_4|NZ_CP041695.1_831583_833674_-	PRK02628, nadE, NAD synthetase; Reviewed	NA|485aa|up_3|NZ_CP041695.1_833998_835453_+	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|368aa|up_2|NZ_CP041695.1_835568_836672_-	cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins	NA|216aa|up_1|NZ_CP041695.1_836774_837422_+	PRK07933, PRK07933, dTMP kinase	NA|226aa|up_0|NZ_CP041695.1_837501_838179_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|605aa|down_0|NZ_CP041695.1_840790_842605_+	PRK13616, PRK13616, MtrAB system accessory protein LpqB	NA|215aa|down_1|NZ_CP041695.1_842963_843608_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|213aa|down_2|NZ_CP041695.1_843875_844514_+	TIGR00741, Probable_sigma54_modulation_protein_ORF3_ORF95	NA|431aa|down_3|NZ_CP041695.1_844642_845935_+	PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed	NA|226aa|down_4|NZ_CP041695.1_845947_846625_-	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|418aa|down_5|NZ_CP041695.1_846729_847983_-	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|474aa|down_6|NZ_CP041695.1_848078_849500_-	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|385aa|down_7|NZ_CP041695.1_849605_850760_-	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|219aa|down_8|NZ_CP041695.1_850941_851598_-	NA	NA|474aa|down_9|NZ_CP041695.1_851656_853078_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	3	848139-848216	3	CRISPRCasFinder	no	csa3	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Type I-A	CTCGCGCAGCACTTCCTTCTCCTG	24	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA,NA|219aa|down_1|NZ_CP041695.1_850941_851598_-	NA|485aa|up_9|NZ_CP041695.1_833998_835453_+	pfam05221, AdoHcyase, S-adenosyl-L-homocysteine hydrolase	NA|368aa|up_8|NZ_CP041695.1_835568_836672_-	cd08567, GDPD_SpGDE_like, Glycerophosphodiester phosphodiesterase domain of putative Silicibacter pomeroyi glycerophosphodiester phosphodiesterase and similar proteins	NA|216aa|up_7|NZ_CP041695.1_836774_837422_+	PRK07933, PRK07933, dTMP kinase	NA|226aa|up_6|NZ_CP041695.1_837501_838179_+	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]	NA|605aa|up_5|NZ_CP041695.1_840790_842605_+	PRK13616, PRK13616, MtrAB system accessory protein LpqB	NA|215aa|up_4|NZ_CP041695.1_842963_843608_+	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only]	NA|213aa|up_3|NZ_CP041695.1_843875_844514_+	TIGR00741, Probable_sigma54_modulation_protein_ORF3_ORF95	NA|431aa|up_2|NZ_CP041695.1_844642_845935_+	PRK08963, fadI, 3-ketoacyl-CoA thiolase; Reviewed	NA|226aa|up_1|NZ_CP041695.1_845947_846625_-	cd02145, BluB, 5,6-dimethylbenzimidazole synthase	NA|418aa|up_0|NZ_CP041695.1_846729_847983_-	COG3239, DesA, Fatty acid desaturase [Lipid metabolism]	NA|385aa|down_0|NZ_CP041695.1_849605_850760_-	cd06216, FNR_iron_sulfur_binding_2, Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain	NA|219aa|down_1|NZ_CP041695.1_850941_851598_-	NA	NA|474aa|down_2|NZ_CP041695.1_851656_853078_-	TIGR02946, Putative_diacyglycerol_O-acyltransferase_Mb3115, acyltransferase, WS/DGAT/MGAT	NA|945aa|down_3|NZ_CP041695.1_853519_856354_+	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed	NA|472aa|down_4|NZ_CP041695.1_856549_857965_+	PRK00302, lnt, apolipoprotein N-acyltransferase; Reviewed	NA|403aa|down_5|NZ_CP041695.1_858010_859219_-	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism]	NA|310aa|down_6|NZ_CP041695.1_859318_860248_+	COG0583, LysR, Transcriptional regulator [Transcription]	NA|724aa|down_7|NZ_CP041695.1_860381_862553_-	COG3973, COG3973, Superfamily I DNA and RNA helicases [General function prediction only]	NA|199aa|down_8|NZ_CP041695.1_862722_863319_-	pfam01872, RibD_C, RibD C-terminal domain	csa3|273aa|down_9|NZ_CP041695.1_863315_864134_-	cd07814, SRPBCC_CalC_Aha1-like, Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	4	935750-935846	4	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Orphan	GGCTCACCTGGGTTCGGTACGTCGCTGG	28	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA|92aa|up_6|NZ_CP041695.1_928585_928861_-,NA|161aa|up_2|NZ_CP041695.1_933354_933837_+,NA|101aa|down_2|NZ_CP041695.1_939357_939660_-	NA|227aa|up_9|NZ_CP041695.1_921903_922584_-	COG2180, NarJ, Nitrate reductase delta subunit [Energy production and conversion]	NA|587aa|up_8|NZ_CP041695.1_922580_924341_-	COG1140, NarY, Nitrate reductase beta subunit [Energy production and conversion]	NA|1241aa|up_7|NZ_CP041695.1_924342_928065_-	COG5013, NarG, Nitrate reductase alpha subunit [Energy production and conversion]	NA|92aa|up_6|NZ_CP041695.1_928585_928861_-	NA	NA|585aa|up_5|NZ_CP041695.1_929227_930982_-	cd00887, MoeA, MoeA family	NA|253aa|up_4|NZ_CP041695.1_931386_932145_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|294aa|up_3|NZ_CP041695.1_932188_933070_-	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only]	NA|161aa|up_2|NZ_CP041695.1_933354_933837_+	NA	NA|96aa|up_1|NZ_CP041695.1_934363_934651_+	pfam02467, Whib, Transcription factor WhiB	NA|247aa|up_0|NZ_CP041695.1_934874_935615_-	pfam18029, Glyoxalase_6, Glyoxalase-like domain	NA|192aa|down_0|NZ_CP041695.1_936074_936650_-	pfam07885, Ion_trans_2, Ion channel	NA|826aa|down_1|NZ_CP041695.1_936883_939361_-	COG2909, MalT, ATP-dependent transcriptional regulator [Transcription]	NA|101aa|down_2|NZ_CP041695.1_939357_939660_-	NA	NA|656aa|down_3|NZ_CP041695.1_939781_941749_+	pfam03704, BTAD, Bacterial transcriptional activator domain	NA|273aa|down_4|NZ_CP041695.1_941888_942707_+	pfam17765, MLTR_LBD, MmyB-like transcription regulator ligand binding domain	NA|106aa|down_5|NZ_CP041695.1_942688_943006_-	COG3695, COG3695, Predicted methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair]	NA|262aa|down_6|NZ_CP041695.1_943067_943853_-	TIGR03695, menH_SHCHC, 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase	NA|954aa|down_7|NZ_CP041695.1_944956_947818_+	pfam12705, PDDEXK_1, PD-(D/E)XK nuclease superfamily	NA|1176aa|down_8|NZ_CP041695.1_947817_951345_+	COG0210, UvrD, Superfamily I DNA and RNA helicases [DNA replication, recombination, and repair]	NA|353aa|down_9|NZ_CP041695.1_951396_952455_+	pfam02254, TrkA_N, TrkA-N domain
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	5	2428119-2428219	5	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Orphan	TTCGACGACCGGGTGCTCGCCGC	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA|72aa|up_5|NZ_CP041695.1_2422502_2422718_-,NA|310aa|up_3|NZ_CP041695.1_2423776_2424706_+,NA	NA|664aa|up_9|NZ_CP041695.1_2415049_2417041_-	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated	NA|683aa|up_8|NZ_CP041695.1_2417293_2419342_+	COG2015, COG2015, Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]	NA|282aa|up_7|NZ_CP041695.1_2419417_2420263_-	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated	NA|301aa|up_6|NZ_CP041695.1_2421462_2422365_+	pfam12146, Hydrolase_4, Serine aminopeptidase, S33	NA|72aa|up_5|NZ_CP041695.1_2422502_2422718_-	NA	NA|113aa|up_4|NZ_CP041695.1_2423018_2423357_+	pfam00507, Oxidored_q4, NADH-ubiquinone/plastoquinone oxidoreductase, chain 3	NA|310aa|up_3|NZ_CP041695.1_2423776_2424706_+	NA	NA|308aa|up_2|NZ_CP041695.1_2424698_2425622_+	pfam00146, NADHdh, NADH dehydrogenase	NA|188aa|up_1|NZ_CP041695.1_2425640_2426204_+	pfam00499, Oxidored_q3, NADH-ubiquinone/plastoquinone oxidoreductase chain 6	NA|101aa|up_0|NZ_CP041695.1_2426200_2426503_+	PRK05715, PRK05715, NADH-quinone oxidoreductase subunit NuoK	NA|498aa|down_0|NZ_CP041695.1_2428485_2429979_+	PRK05846, PRK05846, NADH:ubiquinone oxidoreductase subunit M; Reviewed	NA|466aa|down_1|NZ_CP041695.1_2430037_2431435_+	PRK05777, PRK05777, NADH-quinone oxidoreductase subunit NuoN	NA|207aa|down_2|NZ_CP041695.1_2431592_2432213_-	cd02980, TRX_Fd_family, Thioredoxin (TRX)-like [2Fe-2S] Ferredoxin (Fd) family; composed of [2Fe-2S] Fds with a TRX fold (TRX-like Fds) and proteins containing domains similar to TRX-like Fd including formate dehydrogenases, NAD-reducing hydrogenases and the subunit E of NADH:ubiquinone oxidoreductase (NuoE)	NA|268aa|down_3|NZ_CP041695.1_2432209_2433013_-	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]	NA|349aa|down_4|NZ_CP041695.1_2433009_2434056_-	COG4779, FepG, ABC-type enterobactin transport system, permease component [Inorganic ion transport and metabolism]	NA|324aa|down_5|NZ_CP041695.1_2434073_2435045_-	PRK10441, PRK10441, Fe(3+)-siderophore ABC transporter permease	NA|345aa|down_6|NZ_CP041695.1_2435068_2436103_-	cd01148, TroA_a, Metal binding protein TroA_a	NA|297aa|down_7|NZ_CP041695.1_2436564_2437455_+	pfam13649, Methyltransf_25, Methyltransferase domain	NA|345aa|down_8|NZ_CP041695.1_2437463_2438498_-	COG1522, Lrp, Transcriptional regulators [Transcription]	NA|387aa|down_9|NZ_CP041695.1_2438608_2439769_+	cd03332, LMO_FMN, L-Lactate 2-monooxygenase (LMO) FMN-binding domain
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	6	2653172-2653249	6	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Orphan	CCTGCGCCGAATGAGTGCCTGCACCG	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA|300aa|up_8|NZ_CP041695.1_2641629_2642529_-,NA|138aa|down_1|NZ_CP041695.1_2655684_2656098_-	NA|163aa|up_9|NZ_CP041695.1_2641128_2641617_+	cd03392, PAP2_like_2, PAP2_like_2 proteins	NA|300aa|up_8|NZ_CP041695.1_2641629_2642529_-	NA	NA|458aa|up_7|NZ_CP041695.1_2642652_2644026_-	pfam10009, DUF2252, Uncharacterized protein conserved in bacteria (DUF2252)	NA|565aa|up_6|NZ_CP041695.1_2644091_2645786_-	COG2303, BetA, Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]	NA|204aa|up_5|NZ_CP041695.1_2645942_2646554_+	COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]	NA|133aa|up_4|NZ_CP041695.1_2646613_2647012_+	PRK01202, PRK01202, glycine cleavage system protein GcvH	NA|155aa|up_3|NZ_CP041695.1_2647203_2647668_+	COG1716, COG1716, FOG: FHA domain [Signal transduction mechanisms]	NA|254aa|up_2|NZ_CP041695.1_2647712_2648474_+	cd00592, HTH_MerR-like, Helix-Turn-Helix DNA binding domain of MerR-like transcription regulators	NA|158aa|up_1|NZ_CP041695.1_2648780_2649254_+	pfam02577, DNase-RNase, Bifunctional nuclease	NA|188aa|up_0|NZ_CP041695.1_2649437_2650001_+	cd01105, HTH_GlnR-like, Helix-Turn-Helix DNA binding domain of GlnR-like transcription regulators	NA|735aa|down_0|NZ_CP041695.1_2653328_2655533_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins	NA|138aa|down_1|NZ_CP041695.1_2655684_2656098_-	NA	NA|539aa|down_2|NZ_CP041695.1_2656155_2657772_-	cd01456, vWA_ywmD_type, VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)	NA|89aa|down_3|NZ_CP041695.1_2658014_2658281_-	pfam02467, Whib, Transcription factor WhiB	NA|186aa|down_4|NZ_CP041695.1_2658315_2658873_-	COG1403, McrA, Restriction endonuclease [Defense mechanisms]	NA|500aa|down_5|NZ_CP041695.1_2658859_2660359_+	PRK13693, PRK13693, (3R)-hydroxyacyl-ACP dehydratase subunit HadB; Provisional	NA|240aa|down_6|NZ_CP041695.1_2660596_2661316_-	pfam10099, RskA, Anti-sigma-K factor rskA	NA|219aa|down_7|NZ_CP041695.1_2661308_2661965_-	PRK09646, PRK09646, ECF RNA polymerase sigma factor SigK	NA|730aa|down_8|NZ_CP041695.1_2662354_2664544_-	PRK02999, PRK02999, malate synthase G; Provisional	NA|249aa|down_9|NZ_CP041695.1_2664726_2665473_+	PRK05557, fabG, 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	7	4491265-4491352	7	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Orphan	CGAACGGCGCGAAGCAGTCACGCTCAC	27	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA,NA|273aa|down_0|NZ_CP041695.1_4491419_4492238_-,NA|384aa|down_7|NZ_CP041695.1_4496909_4498061_-	NA|296aa|up_9|NZ_CP041695.1_4479901_4480789_-	TIGR04025, hypothetical_protein, PPOX class probable FMN-dependent enzyme, DR_2398 family	NA|154aa|up_8|NZ_CP041695.1_4480857_4481319_-	cd06587, VOC, vicinal oxygen chelate (VOC) family	NA|172aa|up_7|NZ_CP041695.1_4481472_4481988_+	pfam11706, zf-CGNR, CGNR zinc finger	NA|64aa|up_6|NZ_CP041695.1_4481998_4482190_-	pfam11248, DUF3046, Protein of unknown function (DUF3046)	NA|389aa|up_5|NZ_CP041695.1_4482527_4483694_-	COG1819, COG1819, Glycosyl transferases, related to UDP-glucuronosyltransferase [Carbohydrate transport and metabolism / Signal transduction mechanisms]	NA|237aa|up_4|NZ_CP041695.1_4484048_4484759_-	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown]	NA|391aa|up_3|NZ_CP041695.1_4484837_4486010_-	COG1940, NagC, Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]	NA|258aa|up_2|NZ_CP041695.1_4487458_4488232_-	COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]	NA|387aa|up_1|NZ_CP041695.1_4488238_4489399_-	cd19995, PBP1_ABC_xylose_binding-like, periplasmic xylose-like sugar-binding component of the ABC-type transport systems	NA|315aa|up_0|NZ_CP041695.1_4489507_4490452_-	cd05289, MDR_like_2, alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases	NA|273aa|down_0|NZ_CP041695.1_4491419_4492238_-	NA	NA|277aa|down_1|NZ_CP041695.1_4493186_4494017_-	COG1842, PspA, Phage shock protein A (IM30), suppresses sigma54-dependent transcription [Transcription / Signal transduction mechanisms]	NA|136aa|down_2|NZ_CP041695.1_4494221_4494629_-	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins	NA|160aa|down_3|NZ_CP041695.1_4494722_4495202_-	pfam02464, CinA, Competence-damaged protein	NA|184aa|down_4|NZ_CP041695.1_4495246_4495798_-	TIGR00560, pgsA, CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA|181aa|down_5|NZ_CP041695.1_4496031_4496574_+	PRK07922, PRK07922, amino-acid N-acetyltransferase	NA|95aa|down_6|NZ_CP041695.1_4496614_4496899_+	PRK12863, PRK12863, YciI-like protein; Reviewed	NA|384aa|down_7|NZ_CP041695.1_4496909_4498061_-	NA	NA|458aa|down_8|NZ_CP041695.1_4498434_4499808_+	pfam00067, p450, Cytochrome P450	NA|325aa|down_9|NZ_CP041695.1_4499894_4500869_+	cd00687, Terpene_cyclase_nonplant_C1, Non-plant Terpene Cyclases, Class 1
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	8	5886885-5887004	8	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Orphan	CGACCATCCCCAGACAACGGACGCAACCGACCC	33	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA|175aa|up_0|NZ_CP041695.1_5884407_5884932_-,NA	NA|347aa|up_9|NZ_CP041695.1_5878270_5879311_-	PRK09685, PRK09685, DNA-binding transcriptional activator FeaR; Provisional	NA|289aa|up_8|NZ_CP041695.1_5879338_5880205_-	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA	NA|170aa|up_7|NZ_CP041695.1_5880262_5880772_-	PRK05591, rplQ, 50S ribosomal protein L17; Validated	NA|353aa|up_6|NZ_CP041695.1_5880826_5881885_-	PRK05182, PRK05182, DNA-directed RNA polymerase subunit alpha; Provisional	NA|202aa|up_5|NZ_CP041695.1_5881985_5882591_-	PRK05327, rpsD, 30S ribosomal protein S4; Validated	NA|138aa|up_4|NZ_CP041695.1_5882611_5883025_-	PRK05309, PRK05309, 30S ribosomal protein S11; Validated	NA|124aa|up_3|NZ_CP041695.1_5883034_5883406_-	PRK05179, rpsM, 30S ribosomal protein S13; Validated	NA|38aa|up_2|NZ_CP041695.1_5883628_5883742_-	PRK00465, rpmJ, 50S ribosomal protein L36; Reviewed	NA|74aa|up_1|NZ_CP041695.1_5883838_5884060_-	PRK00276, infA, translation initiation factor IF-1; Validated	NA|175aa|up_0|NZ_CP041695.1_5884407_5884932_-	NA	NA|168aa|down_0|NZ_CP041695.1_5888877_5889381_-	pfam14063, DUF4254, Protein of unknown function (DUF4254)	NA|280aa|down_1|NZ_CP041695.1_5889555_5890395_+	COG2188, PhnF, Transcriptional regulators [Transcription]	NA|204aa|down_2|NZ_CP041695.1_5890391_5891003_+	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family	NA|1342aa|down_3|NZ_CP041695.1_5891023_5895049_-	TIGR03924, T7SS_EccC_a, type VII secretion protein EccCa	NA|473aa|down_4|NZ_CP041695.1_5895066_5896485_-	TIGR03921, T7SS_mycosin, type VII secretion-associated serine protease mycosin	NA|491aa|down_5|NZ_CP041695.1_5896481_5897954_-	TIGR03920, T7SS_EccD, type VII secretion integral membrane protein EccD	NA|612aa|down_6|NZ_CP041695.1_5898107_5899943_+	TIGR03922, T7SS_EccA, type VII secretion AAA-ATPase EccA	NA|567aa|down_7|NZ_CP041695.1_5900322_5902023_+	TIGR03923, T7SS_EccE, type VII secretion protein EccE	NA|137aa|down_8|NZ_CP041695.1_5902044_5902455_-	pfam12158, DUF3592, Protein of unknown function (DUF3592)	NA|636aa|down_9|NZ_CP041695.1_5902503_5904411_-	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	9	6569494-6569649	9	CRISPRCasFinder	no	cas3	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Unclear	CTTCTTGGCGGCGGTCTTCTTCGC	24	1	4	6569566-6569580|6569566-6569580|6569566-6569580|6569566-6569580	NZ_CP041695.1_48555-48569|NZ_CP041695.1_5807026-5807040|NZ_CP041695.1_5832092-5832106|NZ_CP041695.1_6808155-6808169	NA	3	3	Unclear	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA|141aa|up_9|NZ_CP041695.1_6562231_6562654_+,NA|129aa|up_8|NZ_CP041695.1_6562657_6563044_+,NA|126aa|up_7|NZ_CP041695.1_6563050_6563428_+,NA|137aa|up_5|NZ_CP041695.1_6564456_6564867_+,NA|319aa|up_4|NZ_CP041695.1_6564863_6565820_+,NA|78aa|up_3|NZ_CP041695.1_6565842_6566076_+,NA|106aa|down_3|NZ_CP041695.1_6576477_6576795_-	NA|141aa|up_9|NZ_CP041695.1_6562231_6562654_+	NA	NA|129aa|up_8|NZ_CP041695.1_6562657_6563044_+	NA	NA|126aa|up_7|NZ_CP041695.1_6563050_6563428_+	NA	NA|328aa|up_6|NZ_CP041695.1_6563434_6564418_+	PRK07078, PRK07078, hypothetical protein; Validated	NA|137aa|up_5|NZ_CP041695.1_6564456_6564867_+	NA	NA|319aa|up_4|NZ_CP041695.1_6564863_6565820_+	NA	NA|78aa|up_3|NZ_CP041695.1_6565842_6566076_+	NA	NA|440aa|up_2|NZ_CP041695.1_6566078_6567398_+	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons	NA|404aa|up_1|NZ_CP041695.1_6567616_6568828_-	PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated	NA|168aa|up_0|NZ_CP041695.1_6568886_6569390_-	pfam04978, DUF664, Protein of unknown function (DUF664)	NA|68aa|down_0|NZ_CP041695.1_6572668_6572872_-	COG1278, CspC, Cold shock proteins [Transcription]	cas3|794aa|down_1|NZ_CP041695.1_6573307_6575689_+	TIGR03817, DECH_helic, helicase/secretion neighborhood putative DEAH-box helicase	NA|126aa|down_2|NZ_CP041695.1_6576103_6576481_-	TIGR03816, tadE_like_DECH, helicase/secretion neighborhood TadE-like protein	NA|106aa|down_3|NZ_CP041695.1_6576477_6576795_-	NA	NA|72aa|down_4|NZ_CP041695.1_6576860_6577076_-	pfam14029, DUF4244, Protein of unknown function (DUF4244)	NA|199aa|down_5|NZ_CP041695.1_6577133_6577730_-	pfam00482, T2SSF, Type II secretion system (T2SS), protein F	NA|271aa|down_6|NZ_CP041695.1_6577755_6578568_-	COG4965, TadB, Flp pilus assembly protein TadB [Intracellular trafficking and secretion]	NA|396aa|down_7|NZ_CP041695.1_6578649_6579837_-	TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase	NA|412aa|down_8|NZ_CP041695.1_6579833_6581069_-	TIGR03815, CpaE_hom_Actino, helicase/secretion neighborhood CpaE-like protein	NA|306aa|down_9|NZ_CP041695.1_6581311_6582229_+	TIGR01490, Uncharacterized_protein_Rv3661/MT3761, HAD-superfamily subfamily IB hydrolase, TIGR01490
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	10	6648496-6648581	10	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Orphan	GACCCGTCCACGAGGGGTGTCGGGTC	26	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA,NA|371aa|down_1|NZ_CP041695.1_6649780_6650893_+	NA|134aa|up_9|NZ_CP041695.1_6637368_6637770_+	cd07235, MRD, Mitomycin C resistance protein (MRD)	NA|248aa|up_8|NZ_CP041695.1_6637748_6638492_-	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription]	NA|220aa|up_7|NZ_CP041695.1_6638531_6639191_-	pfam13578, Methyltransf_24, Methyltransferase domain	NA|188aa|up_6|NZ_CP041695.1_6639329_6639893_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|452aa|up_5|NZ_CP041695.1_6640011_6641367_+	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|163aa|up_4|NZ_CP041695.1_6641430_6641919_-	COG0386, BtuE, Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]	NA|411aa|up_3|NZ_CP041695.1_6641965_6643198_-	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]	NA|548aa|up_2|NZ_CP041695.1_6643525_6645169_+	PRK02106, PRK02106, choline dehydrogenase; Validated	NA|341aa|up_1|NZ_CP041695.1_6645295_6646318_+	TIGR03617, F420_MSMEG_2256, probable F420-dependent oxidoreductase, MSMEG_2256 family	NA|630aa|up_0|NZ_CP041695.1_6646304_6648194_-	smart00089, PKD, Repeats in polycystic kidney disease 1 (PKD1) and other proteins	NA|206aa|down_0|NZ_CP041695.1_6649040_6649658_-	pfam16859, TetR_C_11, Bacterial transcriptional repressor C-terminal	NA|371aa|down_1|NZ_CP041695.1_6649780_6650893_+	NA	NA|324aa|down_2|NZ_CP041695.1_6650951_6651923_+	cd05154, ACAD10_11_N-like, N-terminal domain of Acyl-CoA dehydrogenase (ACAD) 10 and 11, and similar proteins	NA|173aa|down_3|NZ_CP041695.1_6651860_6652379_-	pfam08592, DUF1772, Domain of unknown function (DUF1772)	NA|194aa|down_4|NZ_CP041695.1_6652864_6653446_+	pfam00440, TetR_N, Bacterial regulatory proteins, tetR family	NA|522aa|down_5|NZ_CP041695.1_6653504_6655070_-	PRK14995, PRK14995, SmvA family efflux MFS transporter	NA|244aa|down_6|NZ_CP041695.1_6655227_6655959_+	pfam02909, TetR_C, Tetracyclin repressor, C-terminal all-alpha domain	NA|488aa|down_7|NZ_CP041695.1_6656025_6657489_-	cd08156, catalase_clade_3, Clade 3 of the heme-binding enzyme catalase	NA|140aa|down_8|NZ_CP041695.1_6657531_6657951_-	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]	NA|414aa|down_9|NZ_CP041695.1_6658391_6659633_+	TIGR00909, putative_amino_acid_transporter, amino acid transporter
GCF_007362295.1_ASM736229v1	NZ_CP041695	Nocardia otitidiscaviarum strain NEB252 chromosome, complete genome	11	7554051-7554125	11	CRISPRCasFinder	no		WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	Orphan	GCGTTGCCTTGTCGGGTGGGCCG	23	0	0	NA	NA	NA	1	1	Orphan	WYL,cas3,csa3,DEDDh,c2c9_V-U4,Cas14u_CAS-V,cas4,DinG	NA,NA|135aa|down_0|NZ_CP041695.1_7554326_7554731_+,NA|135aa|down_9|NZ_CP041695.1_7563927_7564332_+	NA|231aa|up_9|NZ_CP041695.1_7542397_7543090_-	TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE	NA|274aa|up_8|NZ_CP041695.1_7543089_7543911_-	TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD	NA|397aa|up_7|NZ_CP041695.1_7543907_7545098_-	TIGR03408, urea_trans_UrtC, urea ABC transporter, permease protein UrtC	NA|295aa|up_6|NZ_CP041695.1_7545094_7545979_-	TIGR03409, urea_trans_UrtB, urea ABC transporter, permease protein UrtB	NA|427aa|up_5|NZ_CP041695.1_7546054_7547335_-	TIGR03407, urea_ABC_UrtA, urea ABC transporter, urea binding protein	NA|470aa|up_4|NZ_CP041695.1_7547554_7548964_-	COG3800, COG3800, Predicted transcriptional regulator [General function prediction only]	NA|522aa|up_3|NZ_CP041695.1_7549057_7550623_+	PRK03180, ligB, ATP-dependent DNA ligase; Reviewed	NA|147aa|up_2|NZ_CP041695.1_7550914_7551355_-	pfam14063, DUF4254, Protein of unknown function (DUF4254)	NA|415aa|up_1|NZ_CP041695.1_7551741_7552986_+	cd00854, NagA, N-acetylglucosamine-6-phosphate deacetylase, NagA, catalyzes the hydrolysis of the N-acetyl group of N-acetyl-glucosamine-6-phosphate (GlcNAc-6-P) to glucosamine 6-phosphate and acetate	NA|308aa|up_0|NZ_CP041695.1_7553092_7554016_+	TIGR03828, pfkB, 1-phosphofructokinase	NA|135aa|down_0|NZ_CP041695.1_7554326_7554731_+	NA	NA|269aa|down_1|NZ_CP041695.1_7554810_7555617_+	cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters	NA|254aa|down_2|NZ_CP041695.1_7555613_7556375_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|284aa|down_3|NZ_CP041695.1_7556371_7557223_+	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism]	NA|353aa|down_4|NZ_CP041695.1_7557331_7558390_+	pfam09084, NMT1, NMT1/THI5 like	NA|351aa|down_5|NZ_CP041695.1_7558382_7559435_-	COG1975, XdhC, Xanthine and CO dehydrogenases maturation factor, XdhC/CoxF family [Posttranslational modification, protein turnover, chaperones]	NA|230aa|down_6|NZ_CP041695.1_7559434_7560124_-	cd04182, GT_2_like_f, GT_2_like_f is a subfamily of the glycosyltransferase family 2 (GT-2) with unknown function	NA|278aa|down_7|NZ_CP041695.1_7560203_7561037_+	PRK13798, PRK13798, putative OHCU decarboxylase; Provisional	NA|878aa|down_8|NZ_CP041695.1_7561076_7563710_-	pfam00931, NB-ARC, NB-ARC domain	NA|135aa|down_9|NZ_CP041695.1_7563927_7564332_+	NA
